AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035773.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035773.01.T02 MTR_6g088680 96.800 375 11 1 1 375 1 374 0.0 748
MsG0680035773.01.T02 MTR_6g088680 95.946 296 11 1 1 296 1 295 0.0 587
MsG0680035773.01.T02 MTR_8g102510 68.766 381 107 7 1 375 1 375 0.0 508
MsG0680035773.01.T02 MTR_8g102510 68.196 327 94 6 1 323 1 321 2.13e-151 430
MsG0680035773.01.T02 MTR_8g102510 66.333 300 91 6 1 296 1 294 4.39e-133 382
MsG0680035773.01.T02 MTR_6g088685 60.870 230 65 6 17 243 9 216 1.76e-82 251
MsG0680035773.01.T02 MTR_5g022450 33.588 393 182 8 24 360 62 431 7.20e-62 206
MsG0680035773.01.T02 MTR_4g073530 32.687 361 208 7 32 373 54 398 4.13e-59 197
MsG0680035773.01.T02 MTR_8g075350 33.666 401 180 8 27 360 71 452 1.18e-58 197
MsG0680035773.01.T02 MTR_5g022450 32.570 393 180 9 24 360 62 425 8.27e-56 189
MsG0680035773.01.T02 MTR_4g073530 28.829 333 204 6 8 323 33 349 2.97e-42 151
MsG0680035773.01.T02 MTR_8g466670 64.286 56 20 0 45 100 37 92 2.89e-18 82.0
MsG0680035773.01.T02 MTR_8g096220 64.706 51 18 0 45 95 5 55 6.00e-16 74.3
MsG0680035773.01.T01 MTR_6g088680 96.800 375 11 1 1 375 1 374 0.0 748
MsG0680035773.01.T01 MTR_6g088680 95.946 296 11 1 1 296 1 295 0.0 587
MsG0680035773.01.T01 MTR_8g102510 68.766 381 107 7 1 375 1 375 0.0 508
MsG0680035773.01.T01 MTR_8g102510 68.196 327 94 6 1 323 1 321 2.13e-151 430
MsG0680035773.01.T01 MTR_8g102510 66.333 300 91 6 1 296 1 294 4.39e-133 382
MsG0680035773.01.T01 MTR_6g088685 60.870 230 65 6 17 243 9 216 1.76e-82 251
MsG0680035773.01.T01 MTR_5g022450 33.588 393 182 8 24 360 62 431 7.20e-62 206
MsG0680035773.01.T01 MTR_4g073530 32.687 361 208 7 32 373 54 398 4.13e-59 197
MsG0680035773.01.T01 MTR_8g075350 33.666 401 180 8 27 360 71 452 1.18e-58 197
MsG0680035773.01.T01 MTR_5g022450 32.570 393 180 9 24 360 62 425 8.27e-56 189
MsG0680035773.01.T01 MTR_4g073530 28.829 333 204 6 8 323 33 349 2.97e-42 151
MsG0680035773.01.T01 MTR_8g466670 64.286 56 20 0 45 100 37 92 2.89e-18 82.0
MsG0680035773.01.T01 MTR_8g096220 64.706 51 18 0 45 95 5 55 6.00e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035773.01.T02 AT4G15450 53.889 360 137 7 29 370 32 380 3.78e-132 383
MsG0680035773.01.T02 AT4G15450 52.778 360 135 8 29 370 32 374 1.37e-126 369
MsG0680035773.01.T02 AT3G21600 53.186 361 154 5 18 370 20 373 5.94e-125 365
MsG0680035773.01.T02 AT3G21600 54.545 341 142 4 18 352 20 353 1.37e-121 356
MsG0680035773.01.T02 AT3G21600 46.491 228 109 4 18 239 20 240 2.49e-65 209
MsG0680035773.01.T02 AT4G35985 32.771 415 201 9 17 374 55 448 5.33e-63 208
MsG0680035773.01.T02 AT3G51250 30.691 391 192 6 27 358 70 440 4.51e-59 198
MsG0680035773.01.T02 AT2G17840 32.593 405 191 12 11 360 54 431 8.18e-58 195
MsG0680035773.01.T02 AT4G35985 31.339 351 176 8 17 323 55 384 6.39e-48 167
MsG0680035773.01.T02 AT2G17840 30.163 368 175 12 11 323 54 394 9.97e-44 156
MsG0680035773.01.T02 AT3G51250 27.660 329 159 6 27 296 70 378 7.73e-39 142
MsG0680035773.01.T02 AT3G21590 43.210 162 74 4 168 323 69 218 4.95e-28 110
MsG0680035773.01.T02 AT4G35985 30.455 220 112 5 17 196 55 273 2.04e-26 108
MsG0680035773.01.T02 AT3G21590 39.130 138 66 4 168 299 69 194 9.18e-19 84.0
MsG0680035773.01.T02 AT3G21590 38.571 140 68 4 168 301 69 196 5.00e-18 82.4
MsG0680035773.01.T01 AT4G15450 53.889 360 137 7 29 370 32 380 3.78e-132 383
MsG0680035773.01.T01 AT4G15450 52.778 360 135 8 29 370 32 374 1.37e-126 369
MsG0680035773.01.T01 AT3G21600 53.186 361 154 5 18 370 20 373 5.94e-125 365
MsG0680035773.01.T01 AT3G21600 54.545 341 142 4 18 352 20 353 1.37e-121 356
MsG0680035773.01.T01 AT3G21600 46.491 228 109 4 18 239 20 240 2.49e-65 209
MsG0680035773.01.T01 AT4G35985 32.771 415 201 9 17 374 55 448 5.33e-63 208
MsG0680035773.01.T01 AT3G51250 30.691 391 192 6 27 358 70 440 4.51e-59 198
MsG0680035773.01.T01 AT2G17840 32.593 405 191 12 11 360 54 431 8.18e-58 195
MsG0680035773.01.T01 AT4G35985 31.339 351 176 8 17 323 55 384 6.39e-48 167
MsG0680035773.01.T01 AT2G17840 30.163 368 175 12 11 323 54 394 9.97e-44 156
MsG0680035773.01.T01 AT3G51250 27.660 329 159 6 27 296 70 378 7.73e-39 142
MsG0680035773.01.T01 AT3G21590 43.210 162 74 4 168 323 69 218 4.95e-28 110
MsG0680035773.01.T01 AT4G35985 30.455 220 112 5 17 196 55 273 2.04e-26 108
MsG0680035773.01.T01 AT3G21590 39.130 138 66 4 168 299 69 194 9.18e-19 84.0
MsG0680035773.01.T01 AT3G21590 38.571 140 68 4 168 301 69 196 5.00e-18 82.4

Find 38 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTCAATTATTAAGCTTT+TGG 0.203669 6:-112065393 MsG0680035773.01.T01:intron
TTTGGTGGTGTAAAGCAAAT+TGG 0.245112 6:-112065349 MsG0680035773.01.T01:intron
ATATAAAACTTATTTCCTTT+TGG 0.275535 6:-112065367 MsG0680035773.01.T01:intron
CCAAAACCCTTGGTTGTGCC+TGG 0.290137 6:-112065294 MsG0680035773.01.T01:intron
AACATCGACCCTATCATTTC+CGG 0.334455 6:-112065424 MsG0680035773.01.T01:intron
CTCTTTGCCCCGGAAATGAT+AGG 0.359023 6:+112065415 None:intergenic
AAAGATGGATCAAAATCTTA+TGG 0.372864 6:-112065489 MsG0680035773.01.T01:three_prime_UTR
CCAGGCACAACCAAGGGTTT+TGG 0.379409 6:+112065294 None:intergenic
TATAGGTATGGGGAAGAAGC+AGG 0.403987 6:-112065783 MsG0680035773.01.T01:intron
TCTCTGACACACCTTATGTT+GGG 0.406355 6:-112065211 MsG0680035773.01.T01:intron
CTCTCTGACACACCTTATGT+TGG 0.413117 6:-112065212 MsG0680035773.01.T01:intron
TGCAGTAGAAGCTGGATTGA+TGG 0.416271 6:+112065683 None:intergenic
ACATCGACCCTATCATTTCC+GGG 0.429013 6:-112065423 MsG0680035773.01.T01:intron
CACCAATCGTGAAACTGATA+AGG 0.447363 6:+112065317 None:intergenic
AATCAGCTTATTGAGAAAGA+TGG 0.453599 6:-112065504 MsG0680035773.01.T01:three_prime_UTR
CTCTGACACACCTTATGTTG+GGG 0.458139 6:-112065210 MsG0680035773.01.T01:intron
TCCCTTATCAGTTTCACGAT+TGG 0.459278 6:-112065319 MsG0680035773.01.T01:intron
TTTGTATTTAACATAGATGA+AGG 0.459289 6:-112065595 MsG0680035773.01.T01:three_prime_UTR
TTGGTGGTGTAAAGCAAATT+GGG 0.471006 6:-112065348 MsG0680035773.01.T01:intron
AGTGTAGCTGCAGTAGAAGC+TGG 0.473361 6:+112065675 None:intergenic
ACGATTGGTGCCAAAACCCT+TGG 0.479451 6:-112065304 MsG0680035773.01.T01:intron
ATAGGTATGGGGAAGAAGCA+GGG 0.484548 6:-112065782 MsG0680035773.01.T01:intron
ACCAATCGTGAAACTGATAA+GGG 0.496397 6:+112065318 None:intergenic
CAAAACCCTTGGTTGTGCCT+GGG 0.501449 6:-112065293 MsG0680035773.01.T01:intron
ATTTGCTTTACACCACCAAA+AGG 0.503183 6:+112065352 None:intergenic
TAGGTATGGGGAAGAAGCAG+GGG 0.514222 6:-112065781 MsG0680035773.01.T01:CDS
GACATGCTGCTAATACTGCT+TGG 0.519819 6:-112065728 MsG0680035773.01.T01:CDS
TCTTTGCCCCGGAAATGATA+GGG 0.535931 6:+112065416 None:intergenic
AAATACTTGTATAATTCTGA+AGG 0.573146 6:+112065559 None:intergenic
TAATTGAGTTCTCTTTGCCC+CGG 0.588680 6:+112065405 None:intergenic
TACCACCCAGGCACAACCAA+GGG 0.605419 6:+112065288 None:intergenic
GTCTTGGTTATATAGGTATG+GGG 0.612475 6:-112065793 MsG0680035773.01.T01:intron
AACCCTTGGTTGTGCCTGGG+TGG 0.615783 6:-112065290 MsG0680035773.01.T01:intron
GAGCATGTATTTGCAACTGC+AGG 0.617638 6:-112065750 MsG0680035773.01.T01:CDS
ATTTAACATAGATGAAGGCG+TGG 0.656200 6:-112065590 MsG0680035773.01.T01:three_prime_UTR
GTACCACCCAGGCACAACCA+AGG 0.658804 6:+112065287 None:intergenic
TCTGACACACCTTATGTTGG+GGG 0.658830 6:-112065209 MsG0680035773.01.T01:intron
CATCGACCCTATCATTTCCG+GGG 0.661176 6:-112065422 MsG0680035773.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAAAATAGATTTGTT+TGG - Chr6:112067651-112067670 MsG0680035773.01.T01:intron 10.0%
!!! TTTTTCAATTAAAATAATGA+GGG + Chr6:112067792-112067811 None:intergenic 10.0%
!! ACTAATTAATTGATTGATAT+TGG + Chr6:112067222-112067241 None:intergenic 15.0%
!!! ACTTAATTTTTTGTTTTTTG+TGG - Chr6:112068633-112068652 MsG0680035773.01.T01:CDS 15.0%
!!! ATATAAAACTTATTTCCTTT+TGG - Chr6:112068532-112068551 MsG0680035773.01.T01:CDS 15.0%
!!! ATTACTTTTCAAACAAAAAT+AGG + Chr6:112066250-112066269 None:intergenic 15.0%
!!! CTCATTATTTTAATTGAAAA+AGG - Chr6:112067791-112067810 MsG0680035773.01.T01:intron 15.0%
!!! CTTTTTCAATTAAAATAATG+AGG + Chr6:112067793-112067812 None:intergenic 15.0%
!!! TAATTTTGACAACATTATAA+TGG + Chr6:112067182-112067201 None:intergenic 15.0%
!!! TATCTTATATTTTTAACAAG+TGG - Chr6:112067252-112067271 MsG0680035773.01.T01:intron 15.0%
!!! TTCACTCTTTTTTATTTATT+TGG + Chr6:112068029-112068048 None:intergenic 15.0%
!!! TTTTTATGTGTTTTGATTTA+TGG + Chr6:112065102-112065121 None:intergenic 15.0%
!!! TTTTTTTGAAGAAATCAAAA+TGG + Chr6:112068740-112068759 None:intergenic 15.0%
!! AAACACATAAAAAACAAACA+TGG - Chr6:112065109-112065128 MsG0680035773.01.T01:three_prime_UTR 20.0%
!! AAATACTTGTATAATTCTGA+AGG + Chr6:112068343-112068362 None:intergenic 20.0%
!! AACAATTAAAATTTCCTTTG+TGG + Chr6:112067476-112067495 None:intergenic 20.0%
!! AACACATAAAAAACAAACAT+GGG - Chr6:112065110-112065129 MsG0680035773.01.T01:three_prime_UTR 20.0%
!! GAAGAAAAAATGTATATGTA+AGG + Chr6:112067548-112067567 None:intergenic 20.0%
!! GCTATTTGGTATAAAATTTA+GGG + Chr6:112066051-112066070 None:intergenic 20.0%
!! GTTAAAAATATAAGATAGAG+TGG + Chr6:112067249-112067268 None:intergenic 20.0%
!! TAGTATTTCCTTAAAACTTA+TGG + Chr6:112065873-112065892 None:intergenic 20.0%
!! TATTTATGCTAATAATGTAG+TGG + Chr6:112067443-112067462 None:intergenic 20.0%
!! TTACAATTTCAACTACTAAA+AGG - Chr6:112067146-112067165 MsG0680035773.01.T01:CDS 20.0%
!! TTAGAACTTTATATGAAAAC+AGG + Chr6:112065799-112065818 None:intergenic 20.0%
!! TTTGTATTTAACATAGATGA+AGG - Chr6:112068304-112068323 MsG0680035773.01.T01:CDS 20.0%
!!! AAAACAAGAAAGTTTTAAGT+TGG + Chr6:112065993-112066012 None:intergenic 20.0%
!!! ATTTTTCTTAAGTCATCTTA+TGG + Chr6:112068378-112068397 None:intergenic 20.0%
!!! CTCTTTTTTATTTATTTGGT+TGG + Chr6:112068025-112068044 None:intergenic 20.0%
!!! GTTGTTTTCATTAGATATTT+TGG - Chr6:112065819-112065838 MsG0680035773.01.T01:intron 20.0%
!!! TGATTATAATTTTCAACACT+TGG + Chr6:112065602-112065621 None:intergenic 20.0%
!!! TTAAAAGTTGTTTTGAAATC+AGG - Chr6:112066290-112066309 MsG0680035773.01.T01:intron 20.0%
!!! TTAAGGGTAAAATTGTTATT+TGG + Chr6:112067519-112067538 None:intergenic 20.0%
!!! TTATAATCATTTTCTTGCTA+AGG - Chr6:112065613-112065632 MsG0680035773.01.T01:three_prime_UTR 20.0%
!!! TTTTAGATTGAGCTAAAAAA+TGG - Chr6:112066075-112066094 MsG0680035773.01.T01:intron 20.0%
! AAAGATGGATCAAAATCTTA+TGG - Chr6:112068410-112068429 MsG0680035773.01.T01:CDS 25.0%
! AATAATGAGGGTAAAAAATG+AGG + Chr6:112067780-112067799 None:intergenic 25.0%
! AATATATAGTTAGACCACAA+AGG - Chr6:112067459-112067478 MsG0680035773.01.T01:intron 25.0%
! AATTAAAGTACGTCAATCAA+AGG - Chr6:112067106-112067125 MsG0680035773.01.T01:CDS 25.0%
! ACTATATTTGCTTCTTTAAC+CGG + Chr6:112065914-112065933 None:intergenic 25.0%
! ACTTATATGTTATCCACTAT+AGG - Chr6:112067932-112067951 MsG0680035773.01.T01:intron 25.0%
! AGATAGATATGATTAAAGTC+AGG + Chr6:112066518-112066537 None:intergenic 25.0%
! ATAATGAGGGTAAAAAATGA+GGG + Chr6:112067779-112067798 None:intergenic 25.0%
! ATATGTAAGGCAATCATTAA+GGG + Chr6:112067535-112067554 None:intergenic 25.0%
! CAAATATAGTAGTATTGTGT+TGG - Chr6:112065924-112065943 MsG0680035773.01.T01:intron 25.0%
! GAAATTCTTATACAAATTCC+AGG - Chr6:112065224-112065243 MsG0680035773.01.T01:intron 25.0%
! GGCTATTTGGTATAAAATTT+AGG + Chr6:112066052-112066071 None:intergenic 25.0%
! GTAGTTGAAATTGTAAAAGT+CGG + Chr6:112067142-112067161 None:intergenic 25.0%
! TATAAGTTCATGAGAGAATA+TGG + Chr6:112067680-112067699 None:intergenic 25.0%
! TATATGTAAGGCAATCATTA+AGG + Chr6:112067536-112067555 None:intergenic 25.0%
! TTAGCAACAATCATCAAAAT+AGG - Chr6:112065338-112065357 MsG0680035773.01.T01:intron 25.0%
! TTATCCAAATCTTTACTCAA+TGG - Chr6:112066702-112066721 MsG0680035773.01.T01:intron 25.0%
!! ATTTCTTGTCTAAGAGTTTT+TGG + Chr6:112065209-112065228 None:intergenic 25.0%
!! CATAGTAAAACTTTTTACAC+CGG + Chr6:112066576-112066595 None:intergenic 25.0%
!! CTAATATTTGCTTGCATTTT+TGG + Chr6:112068261-112068280 None:intergenic 25.0%
!! GAAAATTGCCATAAGTTTTA+AGG - Chr6:112065862-112065881 MsG0680035773.01.T01:intron 25.0%
!! GAACTCAATTATTAAGCTTT+TGG - Chr6:112068506-112068525 MsG0680035773.01.T01:CDS 25.0%
!! TAAAACTTATTTCCTTTTGG+TGG - Chr6:112068535-112068554 MsG0680035773.01.T01:CDS 25.0%
!! TGATCTTTTGATGTAAACTT+TGG - Chr6:112068658-112068677 MsG0680035773.01.T01:CDS 25.0%
!! TTTGGTTGAATCTTTTCTTA+AGG - Chr6:112065508-112065527 MsG0680035773.01.T01:three_prime_UTR 25.0%
!!! TGTTGAGTTTTTTAAGTGAT+TGG + Chr6:112067888-112067907 None:intergenic 25.0%
!!! TTGAGCACATTTTTTCTTAT+TGG - Chr6:112068786-112068805 MsG0680035773.01.T01:intron 25.0%
!!! TTTGGTTTTGTTGAGAAATT+TGG + Chr6:112065191-112065210 None:intergenic 25.0%
!!! TTTTAGCTCAATCTAAAAGT+TGG + Chr6:112066073-112066092 None:intergenic 25.0%
!!! TTTTGAAATCAGGTTCAAAA+AGG - Chr6:112066300-112066319 MsG0680035773.01.T01:intron 25.0%
AAATAGCCTATATCTGATAG+CGG + Chr6:112067963-112067982 None:intergenic 30.0%
AAATCTTTACTCAATGGTGT+TGG - Chr6:112066708-112066727 MsG0680035773.01.T01:intron 30.0%
AACACCATTGAGTAAAGATT+TGG + Chr6:112066709-112066728 None:intergenic 30.0%
AATCAAATAGAAGACTGAAC+AGG + Chr6:112067066-112067085 None:intergenic 30.0%
AATCAGCTTATTGAGAAAGA+TGG - Chr6:112068395-112068414 MsG0680035773.01.T01:CDS 30.0%
AGATTATCAACTTTCACAAC+TGG + Chr6:112065398-112065417 None:intergenic 30.0%
AGGATGTAAAGTGTATCTAA+TGG - Chr6:112065244-112065263 MsG0680035773.01.T01:intron 30.0%
AGTCCTTCAGATAAGATAAA+TGG - Chr6:112066342-112066361 MsG0680035773.01.T01:intron 30.0%
ATTAGATACACTTTACATCC+TGG + Chr6:112065245-112065264 None:intergenic 30.0%
ATTCATTCTGTTGTTCTTTG+TGG + Chr6:112066418-112066437 None:intergenic 30.0%
CAATCTAAAAGTTGGCTATT+TGG + Chr6:112066065-112066084 None:intergenic 30.0%
CAATTTCAACTACTAAAAGG+TGG - Chr6:112067149-112067168 MsG0680035773.01.T01:CDS 30.0%
CATGAAAAACTAGTTAGAGT+CGG + Chr6:112066637-112066656 None:intergenic 30.0%
GAATGAATGAAAACCTCATA+CGG - Chr6:112066430-112066449 MsG0680035773.01.T01:intron 30.0%
TCTTATCTGAAGGACTATTT+AGG + Chr6:112066338-112066357 None:intergenic 30.0%
TGTCTTGGTTATATAGGTAT+GGG - Chr6:112068105-112068124 MsG0680035773.01.T01:intron 30.0%
TTCTTTAGCCAGTAAAACAT+CGG - Chr6:112066016-112066035 MsG0680035773.01.T01:intron 30.0%
! AAAGTGTATCTAATGGATGA+AGG - Chr6:112065251-112065270 MsG0680035773.01.T01:intron 30.0%
! ACTTTTCCACATGAATTTTC+TGG - Chr6:112065476-112065495 MsG0680035773.01.T01:three_prime_UTR 30.0%
! ATCTTTTAATGTCACAGACA+AGG - Chr6:112067299-112067318 MsG0680035773.01.T01:intron 30.0%
!! ACTGGTTCATCTTTTGTTAA+AGG + Chr6:112065380-112065399 None:intergenic 30.0%
!! GTATTTTTGAATACCGTATG+AGG + Chr6:112066446-112066465 None:intergenic 30.0%
!! TACTCTAAGATCTTCAACTT+TGG + Chr6:112066865-112066884 None:intergenic 30.0%
!! TGGTTGGTAAATAATTAACG+TGG + Chr6:112068009-112068028 None:intergenic 30.0%
!!! AACCACGATTTGTTTTAAGT+CGG - Chr6:112067004-112067023 MsG0680035773.01.T01:intron 30.0%
!!! ATAGGAATGGTTTTTTCCAT+TGG + Chr6:112065161-112065180 None:intergenic 30.0%
AAAAGTCATGCAGTTTCATG+CGG + Chr6:112066222-112066241 None:intergenic 35.0%
AAAGTAACACCATAGCTTAG+AGG + Chr6:112065461-112065480 None:intergenic 35.0%
ACCAATCGTGAAACTGATAA+GGG + Chr6:112068584-112068603 None:intergenic 35.0%
AGAAGAAGAGTGATCTTGAT+TGG - Chr6:112065564-112065583 MsG0680035773.01.T01:three_prime_UTR 35.0%
AGTGTGTGTCTTGGTTATAT+AGG - Chr6:112068099-112068118 MsG0680035773.01.T01:intron 35.0%
ATGCTACCAGAAAATTCATG+TGG + Chr6:112065485-112065504 None:intergenic 35.0%
ATTTAACATAGATGAAGGCG+TGG - Chr6:112068309-112068328 MsG0680035773.01.T01:CDS 35.0%
ATTTGCTTTACACCACCAAA+AGG + Chr6:112068550-112068569 None:intergenic 35.0%
ATTTGGAGAAGCTATAGGAA+TGG + Chr6:112065174-112065193 None:intergenic 35.0%
CAAAAAATTAAGTACCACCC+AGG + Chr6:112068626-112068645 None:intergenic 35.0%
CAACAAGAATGGTTTCTAAC+AGG - Chr6:112067379-112067398 MsG0680035773.01.T01:intron 35.0%
CCACCATTTATCTTATCTGA+AGG + Chr6:112066348-112066367 None:intergenic 35.0%
CCTTCAGATAAGATAAATGG+TGG - Chr6:112066345-112066364 MsG0680035773.01.T01:intron 35.0%
CTGAAAAGACATACGAATGA+TGG - Chr6:112066536-112066555 MsG0680035773.01.T01:CDS 35.0%
GAAGAAGAGTGATCTTGATT+GGG - Chr6:112065565-112065584 MsG0680035773.01.T01:three_prime_UTR 35.0%
GACACACACTCTTGTTAATT+AGG + Chr6:112068089-112068108 None:intergenic 35.0%
GAGAAATTTGGAGAAGCTAT+AGG + Chr6:112065179-112065198 None:intergenic 35.0%
GATAAGATAAATGGTGGCAA+TGG - Chr6:112066351-112066370 MsG0680035773.01.T01:intron 35.0%
GTCTTGGTTATATAGGTATG+GGG - Chr6:112068106-112068125 MsG0680035773.01.T01:intron 35.0%
GTGCTCAATAGACAATGATA+GGG + Chr6:112068774-112068793 None:intergenic 35.0%
GTGTCTTGGTTATATAGGTA+TGG - Chr6:112068104-112068123 MsG0680035773.01.T01:intron 35.0%
GTTGTATATCCAAACCTGAT+TGG + Chr6:112065699-112065718 None:intergenic 35.0%
TAGTAATGCTTACACCAATC+AGG - Chr6:112065682-112065701 MsG0680035773.01.T01:CDS 35.0%
TGAAATCAGGTTCAAAAAGG+AGG - Chr6:112066303-112066322 MsG0680035773.01.T01:intron 35.0%
TGAGACAGTGTAAAATAGTC+AGG + Chr6:112066468-112066487 None:intergenic 35.0%
TGTGCTCAATAGACAATGAT+AGG + Chr6:112068775-112068794 None:intergenic 35.0%
! ATTAACAAGAGTGTGTGTCT+TGG - Chr6:112068090-112068109 MsG0680035773.01.T01:intron 35.0%
! GATGGTTTGTAAATGATTGC+CGG - Chr6:112066554-112066573 MsG0680035773.01.T01:CDS 35.0%
! TATGCTAACCGATGTTTTAC+TGG + Chr6:112066027-112066046 None:intergenic 35.0%
! TTACTTACTGACTGCATCAA+GGG + Chr6:112066826-112066845 None:intergenic 35.0%
! TTTACTTACTGACTGCATCA+AGG + Chr6:112066827-112066846 None:intergenic 35.0%
! TTTTCATTGCCTGTGAAAGA+TGG - Chr6:112065428-112065447 MsG0680035773.01.T01:intron 35.0%
!! ACATGAATTTTCTGGTAGCA+TGG - Chr6:112065484-112065503 MsG0680035773.01.T01:three_prime_UTR 35.0%
!! GATGTTTTACTGGCTAAAGA+AGG + Chr6:112066017-112066036 None:intergenic 35.0%
!! TTGGTGGTGTAAAGCAAATT+GGG - Chr6:112068551-112068570 MsG0680035773.01.T01:CDS 35.0%
!! TTTGGTGGTGTAAAGCAAAT+TGG - Chr6:112068550-112068569 MsG0680035773.01.T01:CDS 35.0%
!!! GTTTTGATTTATGGACCGTT+TGG + Chr6:112065093-112065112 None:intergenic 35.0%
!!! TTGTTTTAAGTCGGTGACAA+CGG - Chr6:112067013-112067032 MsG0680035773.01.T01:intron 35.0%
AAACCATTCTTGTTGCAGCT+TGG + Chr6:112067374-112067393 None:intergenic 40.0%
AACATCGACCCTATCATTTC+CGG - Chr6:112068475-112068494 MsG0680035773.01.T01:CDS 40.0%
AACCATTCTTGTTGCAGCTT+GGG + Chr6:112067373-112067392 None:intergenic 40.0%
ACAAACTATCCCCCAACATA+AGG + Chr6:112068702-112068721 None:intergenic 40.0%
ATGCTTACACCAATCAGGTT+TGG - Chr6:112065687-112065706 MsG0680035773.01.T01:CDS 40.0%
CACCAATCGTGAAACTGATA+AGG + Chr6:112068585-112068604 None:intergenic 40.0%
CTGTGCTTAAATCTCAACCA+GGG - Chr6:112066757-112066776 MsG0680035773.01.T01:intron 40.0%
CTTTCACAGGCAATGAAAAG+AGG + Chr6:112065427-112065446 None:intergenic 40.0%
GAAGCACATGAACTTACACA+AGG - Chr6:112065275-112065294 MsG0680035773.01.T01:intron 40.0%
GGAACTGGTCAGATTGTTAA+GGG - Chr6:112065647-112065666 MsG0680035773.01.T01:CDS 40.0%
TAATTGAGTTCTCTTTGCCC+CGG + Chr6:112068497-112068516 None:intergenic 40.0%
TAGTGTTTACAGAACCTGAC+CGG - Chr6:112066936-112066955 MsG0680035773.01.T01:intron 40.0%
TCCCTTATCAGTTTCACGAT+TGG - Chr6:112068580-112068599 MsG0680035773.01.T01:CDS 40.0%
TCTCTGACACACCTTATGTT+GGG - Chr6:112068688-112068707 MsG0680035773.01.T01:CDS 40.0%
TGGAACTGGTCAGATTGTTA+AGG - Chr6:112065646-112065665 MsG0680035773.01.T01:CDS 40.0%
TTTCTTGCTAAGGCTATTGC+TGG - Chr6:112065623-112065642 MsG0680035773.01.T01:exon 40.0%
! AATGGTGTTGGAATAGTGAG+TGG - Chr6:112066720-112066739 MsG0680035773.01.T01:intron 40.0%
! TATGTTGGGGGATAGTTTGT+TGG - Chr6:112068702-112068721 MsG0680035773.01.T01:CDS 40.0%
! TGGTCGGTTCAATTAGGAAT+CGG - Chr6:112066961-112066980 MsG0680035773.01.T01:intron 40.0%
!! ATTTTCTGGTAGCATGGCTT+TGG - Chr6:112065490-112065509 MsG0680035773.01.T01:three_prime_UTR 40.0%
!! CACCGACTTAAAACAAATCG+TGG + Chr6:112067009-112067028 None:intergenic 40.0%
!! TCATTTTGATCAAGCGATCG+TGG + Chr6:112066118-112066137 None:intergenic 40.0%
!!! GGAATGGTTTTTTCCATTGG+TGG + Chr6:112065158-112065177 None:intergenic 40.0%
!!! GGTTTTTTCCATTGGTGGTA+GGG + Chr6:112065153-112065172 None:intergenic 40.0%
!!! TGGTTTTTTCCATTGGTGGT+AGG + Chr6:112065154-112065173 None:intergenic 40.0%
AAATACTAACCAATGCCCGC+AGG - Chr6:112065885-112065904 MsG0680035773.01.T01:intron 45.0%
AATACTAACCAATGCCCGCA+GGG - Chr6:112065886-112065905 MsG0680035773.01.T01:intron 45.0%
ACATCGACCCTATCATTTCC+GGG - Chr6:112068476-112068495 MsG0680035773.01.T01:CDS 45.0%
ATAGGTATGGGGAAGAAGCA+GGG - Chr6:112068117-112068136 MsG0680035773.01.T01:intron 45.0%
CCTGGTTGAGATTTAAGCAC+AGG + Chr6:112066759-112066778 None:intergenic 45.0%
CCTGTGCTTAAATCTCAACC+AGG - Chr6:112066756-112066775 MsG0680035773.01.T01:intron 45.0%
CTCTCTGACACACCTTATGT+TGG - Chr6:112068687-112068706 MsG0680035773.01.T01:CDS 45.0%
CTCTGACACACCTTATGTTG+GGG - Chr6:112068689-112068708 MsG0680035773.01.T01:CDS 45.0%
GAACAGCGATTCAACCTAGA+TGG - Chr6:112067035-112067054 MsG0680035773.01.T01:intron 45.0%
GACATGCTGCTAATACTGCT+TGG - Chr6:112068171-112068190 MsG0680035773.01.T01:intron 45.0%
GAGCATGTATTTGCAACTGC+AGG - Chr6:112068149-112068168 MsG0680035773.01.T01:intron 45.0%
GATAAATGGTGGCAATGGCA+TGG - Chr6:112066356-112066375 MsG0680035773.01.T01:intron 45.0%
TATAGGTATGGGGAAGAAGC+AGG - Chr6:112068116-112068135 MsG0680035773.01.T01:intron 45.0%
TCTGACACACCTTATGTTGG+GGG - Chr6:112068690-112068709 MsG0680035773.01.T01:CDS 45.0%
TCTTTGCCCCGGAAATGATA+GGG + Chr6:112068486-112068505 None:intergenic 45.0%
TGCAGTAGAAGCTGGATTGA+TGG + Chr6:112068219-112068238 None:intergenic 45.0%
! CTGAACAGGTTGAACCATCT+AGG + Chr6:112067052-112067071 None:intergenic 45.0%
!! TTCCATTGGTGGTAGGGTTT+TGG + Chr6:112065147-112065166 None:intergenic 45.0%
!!! CAAGGTTTTTGAAGCAGCAG+AGG - Chr6:112067317-112067336 MsG0680035773.01.T01:intron 45.0%
AAGCCAACAAGACCTCTCCT+GGG + Chr6:112066803-112066822 None:intergenic 50.0%
AAGGCTATTGCTGGTGGAAC+TGG - Chr6:112065632-112065651 MsG0680035773.01.T01:exon 50.0%
AGTGTAGCTGCAGTAGAAGC+TGG + Chr6:112068227-112068246 None:intergenic 50.0%
ATCTTAAGGAATGCCTGCCC+TGG + Chr6:112066777-112066796 None:intergenic 50.0%
CAAAACCCTTGGTTGTGCCT+GGG - Chr6:112068606-112068625 MsG0680035773.01.T01:CDS 50.0%
CATCGACCCTATCATTTCCG+GGG - Chr6:112068477-112068496 MsG0680035773.01.T01:CDS 50.0%
CATTCTTGTTGCAGCTTGGG+AGG + Chr6:112067370-112067389 None:intergenic 50.0%
CCTAATTGAACCGACCAGTC+CGG + Chr6:112066958-112066977 None:intergenic 50.0%
CTCCAAAACCCTACCACCAA+TGG - Chr6:112065142-112065161 MsG0680035773.01.T01:intron 50.0%
CTCCCAAGCTGCAACAAGAA+TGG - Chr6:112067368-112067387 MsG0680035773.01.T01:intron 50.0%
CTCTTTGCCCCGGAAATGAT+AGG + Chr6:112068487-112068506 None:intergenic 50.0%
CTTGCTAAGGCTATTGCTGG+TGG - Chr6:112065626-112065645 MsG0680035773.01.T01:exon 50.0%
GCACGTCCGCTATCAGATAT+AGG - Chr6:112067954-112067973 MsG0680035773.01.T01:intron 50.0%
GCATTCCTTAAGATGCTCCC+AGG - Chr6:112066783-112066802 MsG0680035773.01.T01:intron 50.0%
GCTTAAATCTCAACCAGGGC+AGG - Chr6:112066761-112066780 MsG0680035773.01.T01:intron 50.0%
GGCTCATGACCATCTTTCAC+AGG + Chr6:112065440-112065459 None:intergenic 50.0%
GGTCATGAGCCTCTAAGCTA+TGG - Chr6:112065449-112065468 MsG0680035773.01.T01:three_prime_UTR 50.0%
TAGGTATGGGGAAGAAGCAG+GGG - Chr6:112068118-112068137 MsG0680035773.01.T01:intron 50.0%
TTTACAGAACCTGACCGGAC+TGG - Chr6:112066941-112066960 MsG0680035773.01.T01:intron 50.0%
!! ACGATTGGTGCCAAAACCCT+TGG - Chr6:112068595-112068614 MsG0680035773.01.T01:CDS 50.0%
CCAAAACCCTTGGTTGTGCC+TGG - Chr6:112068605-112068624 MsG0680035773.01.T01:CDS 55.0%
CCTTAAGATGCTCCCAGGAG+AGG - Chr6:112066788-112066807 MsG0680035773.01.T01:intron 55.0%
CTTCTTTAACCGGTGCCCTG+CGG + Chr6:112065904-112065923 None:intergenic 55.0%
GAAGCCAACAAGACCTCTCC+TGG + Chr6:112066804-112066823 None:intergenic 55.0%
TACCACCCAGGCACAACCAA+GGG + Chr6:112068614-112068633 None:intergenic 55.0%
TCTTGTTGCAGCTTGGGAGG+TGG + Chr6:112067367-112067386 None:intergenic 55.0%
TTCTTTAACCGGTGCCCTGC+GGG + Chr6:112065903-112065922 None:intergenic 55.0%
! CCAGGCACAACCAAGGGTTT+TGG + Chr6:112068608-112068627 None:intergenic 55.0%
!! CCGGACTGGTCGGTTCAATT+AGG - Chr6:112066955-112066974 MsG0680035773.01.T01:intron 55.0%
!! CCTCTCCTGGGAGCATCTTA+AGG + Chr6:112066791-112066810 None:intergenic 55.0%
!! GATAGCGGACGTGCCTATAG+TGG + Chr6:112067948-112067967 None:intergenic 55.0%
AACCCTTGGTTGTGCCTGGG+TGG - Chr6:112068609-112068628 MsG0680035773.01.T01:CDS 60.0%
GTACCACCCAGGCACAACCA+AGG + Chr6:112068615-112068634 None:intergenic 60.0%
TTGAACCGACCAGTCCGGTC+AGG + Chr6:112066953-112066972 None:intergenic 60.0%
! GCTCCCAGGAGAGGTCTTGT+TGG - Chr6:112066797-112066816 MsG0680035773.01.T01:intron 60.0%
!! CAGAACCTGACCGGACTGGT+CGG - Chr6:112066945-112066964 MsG0680035773.01.T01:intron 60.0%
AACCAATGCCCGCAGGGCAC+CGG - Chr6:112065892-112065911 MsG0680035773.01.T01:intron 65.0%
AACCGGTGCCCTGCGGGCAT+TGG + Chr6:112065897-112065916 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 112065085 112068836 112065085 ID=MsG0680035773.01;Name=MsG0680035773.01
Chr6 mRNA 112065085 112068836 112065085 ID=MsG0680035773.01.T01;Parent=MsG0680035773.01;Name=MsG0680035773.01.T01;_AED=0.31;_eAED=0.31;_QI=43|1|1|1|0.8|0.66|6|268|375
Chr6 exon 112065085 112065141 112065085 ID=MsG0680035773.01.T01:exon:9448;Parent=MsG0680035773.01.T01
Chr6 exon 112065430 112065800 112065430 ID=MsG0680035773.01.T01:exon:9447;Parent=MsG0680035773.01.T01
Chr6 five_prime_UTR 112068794 112068836 112068794 ID=MsG0680035773.01.T01:five_prime_utr;Parent=MsG0680035773.01.T01
Chr6 CDS 112068218 112068793 112068218 ID=MsG0680035773.01.T01:cds;Parent=MsG0680035773.01.T01
Chr6 CDS 112067470 112067609 112067470 ID=MsG0680035773.01.T01:cds;Parent=MsG0680035773.01.T01
Chr6 CDS 112067084 112067250 112067084 ID=MsG0680035773.01.T01:cds;Parent=MsG0680035773.01.T01
Chr6 CDS 112066521 112066605 112066521 ID=MsG0680035773.01.T01:cds;Parent=MsG0680035773.01.T01
Chr6 CDS 112065641 112065800 112065641 ID=MsG0680035773.01.T01:cds;Parent=MsG0680035773.01.T01
Chr6 three_prime_UTR 112065430 112065640 112065430 ID=MsG0680035773.01.T01:three_prime_utr;Parent=MsG0680035773.01.T01
Chr6 three_prime_UTR 112065085 112065141 112065085 ID=MsG0680035773.01.T01:three_prime_utr;Parent=MsG0680035773.01.T01
Chr6 mRNA 112065170 112068836 112065170 ID=MsG0680035773.01.T02;Parent=MsG0680035773.01;Name=MsG0680035773.01.T02;_AED=0.28;_eAED=0.28;_QI=43|1|1|1|1|1|5|471|375
Chr6 exon 112065170 112065800 112065170 ID=MsG0680035773.01.T02:exon:9449;Parent=MsG0680035773.01.T02
Chr6 five_prime_UTR 112068794 112068836 112068794 ID=MsG0680035773.01.T02:five_prime_utr;Parent=MsG0680035773.01.T02
Chr6 CDS 112068218 112068793 112068218 ID=MsG0680035773.01.T02:cds;Parent=MsG0680035773.01.T02
Chr6 CDS 112067470 112067609 112067470 ID=MsG0680035773.01.T02:cds;Parent=MsG0680035773.01.T02
Chr6 CDS 112067084 112067250 112067084 ID=MsG0680035773.01.T02:cds;Parent=MsG0680035773.01.T02
Chr6 CDS 112066521 112066605 112066521 ID=MsG0680035773.01.T02:cds;Parent=MsG0680035773.01.T02
Chr6 CDS 112065641 112065800 112065641 ID=MsG0680035773.01.T02:cds;Parent=MsG0680035773.01.T02
Chr6 three_prime_UTR 112065170 112065640 112065170 ID=MsG0680035773.01.T02:three_prime_utr;Parent=MsG0680035773.01.T02
Gene Sequence

>MsG0680035773.01.T02

ATGGGTTGTACTGACTCCAAAACCCTACCACCAATGGAAAAAACCATTCCTATAGCTTCTCCAAATTTCTCAACAAAACCAAAAACTCTTAGACAAGAAATTCTTATACAAATTCCAGGATGTAAAGTGTATCTAATGGATGAAGGAGAAGCACATGAACTTACACAAGGACAATTCATGATCATAAAAATAGTTGATGAAAATGTTTCTTTAGCAACAATCATCAAAATAGGAAACAATGTTCAATTTCCTTTAACAAAAGATGAACCAGTTGTGAAAGTTGATAATCTTCATTACCTCTTTTCATTGCCTGTGAAAGATGGTCATGAGCCTCTAAGCTATGGTGTTACTTTTCCACATGAATTTTCTGGTAGCATGGCTTTGGTTGAATCTTTTCTTAAGGAACACTCTTGCTTTTCTGATTTGAAATTGAGTAAGAAGAAGAGTGATCTTGATTGGGAAGAGTTTGCTCCAAGTGTTGAAAATTATAATCATTTTCTTGCTAAGGCTATTGCTGGTGGAACTGGTCAGATTGTTAAGGGTATCTTTATGTGTAGTAATGCTTACACCAATCAGGTTCAAAAAGGAGGACAAAATATCCTAAATAGTCCTTCAGATAAGATAAATGGTGGCAATGGCATGGTCAAACAAAGTACTATGAACAACAAAACTGCTGCTGCCACAAAGAACAACAGAATGAATGAAAACCTCATACGTGTGAGAAAGCTTACAAATATGACAGAACACTTATCCAAATCTTTACTCAATGGTGTTGGAATAGTGAGTGGATCATTGATGACTCCTGTGCTTAAATCTCAACCAGGGCAGGCATTCCTTAAGATGCTCCCAGGAGAGGTCTTGTTGGCTTCCCTTGATGCAGTCAACAAGGTTTTTGAAGCAGCAGAGGCAGCTGAAAAACAAACTCTATCTGCCACCTCCCAAGCTGCAACAAGAATGGTTTCTAACAGGTATGGGGAAGAAGCAGGGGAAGCAACTGAGCATGTATTTGCAACTGCAGGACATGCTGCTAATACTGCTTGGAATGTTTCTAAGATAAGAAAAGCCATCAATCCAGCTTCTACTGCAGCTACACTGAGAAATTCTGCCAAAAATGCAAGCAAATATTAG

>MsG0680035773.01.T01

ATGGGTTGTACTGACTCCAAAACCCTACCACCAATGGAAAAAACCATTCCTATAGCTTCTCCAAATTTCTCAACAAAACCAAAAACTCTTAGACAAGAAATTCTTATACAAATTCCAGGATGTAAAGTGTATCTAATGGATGAAGGAGAAGCACATGAACTTACACAAGGACAATTCATGATCATAAAAATAGTTGATGAAAATGTTTCTTTAGCAACAATCATCAAAATAGGAAACAATGTTCAATTTCCTTTAACAAAAGATGAACCAGTTGTGAAAGTTGATAATCTTCATTACCTCTTTTCATTGCCTGTGAAAGATGGTCATGAGCCTCTAAGCTATGGTGTTACTTTTCCACATGAATTTTCTGGTAGCATGGCTTTGGTTGAATCTTTTCTTAAGGAACACTCTTGCTTTTCTGATTTGAAATTGAGTAAGAAGAAGAGTGATCTTGATTGGGAAGAGTTTGCTCCAAGTGTTGAAAATTATAATCATTTTCTTGCTAAGGCTATTGCTGGTGGAACTGGTCAGATTGTTAAGGGTATCTTTATGTGTAGTAATGCTTACACCAATCAGGTTCAAAAAGGAGGACAAAATATCCTAAATAGTCCTTCAGATAAGATAAATGGTGGCAATGGCATGGTCAAACAAAGTACTATGAACAACAAAACTGCTGCTGCCACAAAGAACAACAGAATGAATGAAAACCTCATACGTGTGAGAAAGCTTACAAATATGACAGAACACTTATCCAAATCTTTACTCAATGGTGTTGGAATAGTGAGTGGATCATTGATGACTCCTGTGCTTAAATCTCAACCAGGGCAGGCATTCCTTAAGATGCTCCCAGGAGAGGTCTTGTTGGCTTCCCTTGATGCAGTCAACAAGGTTTTTGAAGCAGCAGAGGCAGCTGAAAAACAAACTCTATCTGCCACCTCCCAAGCTGCAACAAGAATGGTTTCTAACAGGTATGGGGAAGAAGCAGGGGAAGCAACTGAGCATGTATTTGCAACTGCAGGACATGCTGCTAATACTGCTTGGAATGTTTCTAAGATAAGAAAAGCCATCAATCCAGCTTCTACTGCAGCTACACTGAGAAATTCTGCCAAAAATGCAAGCAAATATTAG

Protein sequence

>MsG0680035773.01.T02

MGCTDSKTLPPMEKTIPIASPNFSTKPKTLRQEILIQIPGCKVYLMDEGEAHELTQGQFMIIKIVDENVSLATIIKIGNNVQFPLTKDEPVVKVDNLHYLFSLPVKDGHEPLSYGVTFPHEFSGSMALVESFLKEHSCFSDLKLSKKKSDLDWEEFAPSVENYNHFLAKAIAGGTGQIVKGIFMCSNAYTNQVQKGGQNILNSPSDKINGGNGMVKQSTMNNKTAAATKNNRMNENLIRVRKLTNMTEHLSKSLLNGVGIVSGSLMTPVLKSQPGQAFLKMLPGEVLLASLDAVNKVFEAAEAAEKQTLSATSQAATRMVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRKAINPASTAATLRNSAKNASKY*

>MsG0680035773.01.T01

MGCTDSKTLPPMEKTIPIASPNFSTKPKTLRQEILIQIPGCKVYLMDEGEAHELTQGQFMIIKIVDENVSLATIIKIGNNVQFPLTKDEPVVKVDNLHYLFSLPVKDGHEPLSYGVTFPHEFSGSMALVESFLKEHSCFSDLKLSKKKSDLDWEEFAPSVENYNHFLAKAIAGGTGQIVKGIFMCSNAYTNQVQKGGQNILNSPSDKINGGNGMVKQSTMNNKTAAATKNNRMNENLIRVRKLTNMTEHLSKSLLNGVGIVSGSLMTPVLKSQPGQAFLKMLPGEVLLASLDAVNKVFEAAEAAEKQTLSATSQAATRMVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRKAINPASTAATLRNSAKNASKY*