AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011581.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011581.01.T01 MTR_3g006790 95.610 205 8 1 9 213 1 204 3.41e-144 400
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011581.01.T01 AT5G04910 69.231 182 56 0 32 213 41 222 5.21e-83 246

Find 53 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGAAGATTTGGAATT+TGG 0.083112 3:-1781977 MsG0380011581.01.T01:CDS
GATTGTAATGGATGGTTATT+TGG 0.208831 3:-1778888 MsG0380011581.01.T01:three_prime_UTR
GCAAGTAATTTATATTAAAA+TGG 0.247695 3:-1778965 MsG0380011581.01.T01:three_prime_UTR
ACGAAGCAAAACAGCGATTT+TGG 0.256682 3:+1781904 None:intergenic
CGGAGTGATGGAAGAAGATT+TGG 0.282022 3:-1781984 MsG0380011581.01.T01:CDS
AAGGAGATCACTGAAGCTTC+TGG 0.308239 3:-1779239 MsG0380011581.01.T01:CDS
CATGACTTCTGGAGGGGAAT+TGG 0.328109 3:-1780650 MsG0380011581.01.T01:CDS
TGGAAGAAGATTTGGAATTT+GGG 0.347258 3:-1781976 MsG0380011581.01.T01:CDS
TGCTCAGTGCTAACAGATAT+TGG 0.350928 3:-1779053 MsG0380011581.01.T01:three_prime_UTR
CCTGTTCTTGAACAGCTCTA+AGG 0.384342 3:+1780398 None:intergenic
AGATCAATGCGGCTATAGTC+AGG 0.401278 3:+1780430 None:intergenic
GTGAAATGGAGTCGCTGTTT+CGG 0.408334 3:-1780456 MsG0380011581.01.T01:CDS
TTGGCTTATCAGCAGCTTTG+TGG 0.423590 3:-1780631 MsG0380011581.01.T01:CDS
TTGTAAATTTGCAATTATCA+TGG 0.426145 3:+1779291 None:intergenic
CCTTAGAGCTGTTCAAGAAC+AGG 0.429245 3:-1780398 MsG0380011581.01.T01:CDS
ACCTCATTACTTGATTGTAA+TGG 0.429499 3:-1778900 MsG0380011581.01.T01:three_prime_UTR
AGATTTGGAATTTGGGAAGA+AGG 0.436083 3:-1781969 MsG0380011581.01.T01:CDS
AAGCTTATTCCAAACTCAAA+AGG 0.441845 3:-1781850 MsG0380011581.01.T01:intron
GCATGAGTGTGTCCATGTTA+AGG 0.447012 3:-1779258 MsG0380011581.01.T01:CDS
CCGCTTTCTTTAACAGCTGA+AGG 0.459259 3:+1779339 None:intergenic
ATCATGGCTTACCAGTCGTT+CGG 0.468178 3:+1779307 None:intergenic
TGAAGCTATTAGAGGTGTCC+AGG 0.497762 3:-1779171 MsG0380011581.01.T01:CDS
TGGACACACTCATGCTCTGT+TGG 0.499630 3:+1779266 None:intergenic
TTTAGCATAGGTCCGTGAAA+TGG 0.500168 3:-1780470 MsG0380011581.01.T01:intron
AGGAGATCACTGAAGCTTCT+GGG 0.504065 3:-1779238 MsG0380011581.01.T01:CDS
GGAAAAGCAGAAACTGCATC+TGG 0.521529 3:-1780377 MsG0380011581.01.T01:intron
TGCGCCTATGTACATTCCAC+TGG 0.526781 3:+1779017 None:intergenic
CATTACTTGATTGTAATGGA+TGG 0.528848 3:-1778896 MsG0380011581.01.T01:three_prime_UTR
CAGTGCTAACAGATATTGGC+AGG 0.530419 3:-1779049 MsG0380011581.01.T01:three_prime_UTR
GAAACAGCGACTCCATTTCA+CGG 0.536570 3:+1780458 None:intergenic
TGATGACCATGACAGCATCC+TGG 0.539396 3:+1779153 None:intergenic
GGGTCGGCCATCCGAACGAC+TGG 0.546391 3:-1779318 MsG0380011581.01.T01:CDS
TGGCAGGTGTTTACAACCAG+TGG 0.551061 3:-1779033 MsG0380011581.01.T01:three_prime_UTR
GCTTATCAGCAGCTTTGTGG+TGG 0.558650 3:-1780628 MsG0380011581.01.T01:CDS
AGGTGTCCAGGATGCTGTCA+TGG 0.560024 3:-1779159 MsG0380011581.01.T01:CDS
CTTCAGCTGTTAAAGAAAGC+GGG 0.562359 3:-1779338 MsG0380011581.01.T01:CDS
CTTCAGTGATCTCCTTAACA+TGG 0.563538 3:+1779246 None:intergenic
GCTGTGAATGAAGCTATTAG+AGG 0.564398 3:-1779179 MsG0380011581.01.T01:CDS
AGTGAGTGAGTTGAATGAAA+AGG 0.565722 3:-1782015 None:intergenic
TCCATTACAATCAAGTAATG+AGG 0.566753 3:+1778899 None:intergenic
CCTTCAGCTGTTAAAGAAAG+CGG 0.588320 3:-1779339 MsG0380011581.01.T01:CDS
TGGGACTGAAGAAGCAGAAG+CGG 0.588338 3:-1779219 MsG0380011581.01.T01:CDS
ATTCACAGCATTATCATACT+CGG 0.588368 3:+1779193 None:intergenic
CGCTTTCTTTAACAGCTGAA+GGG 0.591750 3:+1779340 None:intergenic
TTCGATAAACGACGACACAA+TGG 0.594243 3:-1781945 MsG0380011581.01.T01:CDS
CTGACTACATGACTTCTGGA+GGG 0.596770 3:-1780657 MsG0380011581.01.T01:CDS
TCTGACTACATGACTTCTGG+AGG 0.598390 3:-1780658 MsG0380011581.01.T01:CDS
TGGCTTACCAGTCGTTCGGA+TGG 0.598843 3:+1779311 None:intergenic
TGACTACATGACTTCTGGAG+GGG 0.607829 3:-1780656 MsG0380011581.01.T01:CDS
ACAACCAGTGGAATGTACAT+AGG 0.618189 3:-1779021 MsG0380011581.01.T01:three_prime_UTR
GATCAATGCGGCTATAGTCA+GGG 0.644027 3:+1780431 None:intergenic
AGCTGTTAAAGAAAGCGGGT+CGG 0.673250 3:-1779334 MsG0380011581.01.T01:CDS
GGATTTGTGCTAGATCAATG+CGG 0.738873 3:+1780419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATACAATGTATTAAT+AGG - Chr3:1780079-1780098 MsG0380011581.01.T01:intron 15.0%
!! ATTCATACAATGTATTAATA+GGG - Chr3:1780080-1780099 MsG0380011581.01.T01:intron 15.0%
!! GCAAGTAATTTATATTAAAA+TGG - Chr3:1781879-1781898 MsG0380011581.01.T01:CDS 15.0%
!! TATAGTTGATTAAATTAAAC+AGG + Chr3:1780787-1780806 None:intergenic 15.0%
!!! TGAATTTTCATAATAGAAAA+AGG + Chr3:1780065-1780084 None:intergenic 15.0%
!!! TTAAATTTCTAGATTTATGT+TGG - Chr3:1779954-1779973 MsG0380011581.01.T01:intron 15.0%
!!! TTGATTTAACTTAAATAAGA+AGG + Chr3:1780977-1780996 None:intergenic 15.0%
!! AATACAAAACACTTGAATTA+AGG + Chr3:1781451-1781470 None:intergenic 20.0%
!! TAAAAGAAAACGATAATGTT+AGG + Chr3:1780290-1780309 None:intergenic 20.0%
!! TTGTAAATTTGCAATTATCA+TGG + Chr3:1781556-1781575 None:intergenic 20.0%
!!! ATTATTGAAGTGTTTTGTTA+AGG - Chr3:1780745-1780764 MsG0380011581.01.T01:intron 20.0%
!!! TATGTTGGTTGTTTTTTAAA+AGG - Chr3:1779969-1779988 MsG0380011581.01.T01:intron 20.0%
!!! TCTTTTTATATCTTCTATCT+GGG - Chr3:1780600-1780619 MsG0380011581.01.T01:CDS 20.0%
!!! TTCTTTTTATATCTTCTATC+TGG - Chr3:1780599-1780618 MsG0380011581.01.T01:CDS 20.0%
! AATTAAATATACCGTAACAC+CGG + Chr3:1779673-1779692 None:intergenic 25.0%
! CAATGTCATTATGAAACATT+TGG + Chr3:1780141-1780160 None:intergenic 25.0%
! CTATTTGACCATTAAATCTT+CGG - Chr3:1780704-1780723 MsG0380011581.01.T01:intron 25.0%
! GTAAGTTAACTTCAATCTTA+GGG - Chr3:1780015-1780034 MsG0380011581.01.T01:intron 25.0%
! GTTTAATGATTGCTCAAAAA+AGG - Chr3:1780251-1780270 MsG0380011581.01.T01:intron 25.0%
! TAACTTAAACTATGTGTGTT+TGG - Chr3:1779303-1779322 MsG0380011581.01.T01:CDS 25.0%
! TCAAAATTCCAAAAACATTC+TGG + Chr3:1779746-1779765 None:intergenic 25.0%
! TTGAACAAACATGGAATTAA+AGG + Chr3:1780891-1780910 None:intergenic 25.0%
!! ATTTTGTTGAATCACTTGAA+TGG - Chr3:1781260-1781279 MsG0380011581.01.T01:intron 25.0%
!! TATCTTTTCTGATTTAGCAT+AGG - Chr3:1780362-1780381 MsG0380011581.01.T01:intron 25.0%
!! TGATGTTTTATGTGCATTAT+TGG - Chr3:1780666-1780685 MsG0380011581.01.T01:CDS 25.0%
!! TTAGTAGTTATGTTAGTTTC+CGG - Chr3:1779199-1779218 MsG0380011581.01.T01:CDS 25.0%
!!! ATTCTGCTTACTTTTAATTG+TGG - Chr3:1781387-1781406 MsG0380011581.01.T01:intron 25.0%
AAGAAATGTCCTTAAACTAG+GGG + Chr3:1780497-1780516 None:intergenic 30.0%
AAGAATTGCCGAAGATTTAA+TGG + Chr3:1780715-1780734 None:intergenic 30.0%
AAGCTTATTCCAAACTCAAA+AGG - Chr3:1778994-1779013 MsG0380011581.01.T01:three_prime_UTR 30.0%
AAGTAAGCAGAATAACTAAC+TGG + Chr3:1781380-1781399 None:intergenic 30.0%
AATTAAAGGAACATCCTTGA+GGG + Chr3:1780877-1780896 None:intergenic 30.0%
ACCTCATTACTTGATTGTAA+TGG - Chr3:1781944-1781963 MsG0380011581.01.T01:CDS 30.0%
AGAAGAAATGTCCTTAAACT+AGG + Chr3:1780499-1780518 None:intergenic 30.0%
ATAGCCTATGTTTAGTATCA+CGG + Chr3:1779438-1779457 None:intergenic 30.0%
ATTCACAGCATTATCATACT+CGG + Chr3:1781654-1781673 None:intergenic 30.0%
ATTTGACTAAACATTCCAAC+AGG + Chr3:1780838-1780857 None:intergenic 30.0%
CAATGTATTAATAGGGCTAT+TGG - Chr3:1780087-1780106 MsG0380011581.01.T01:intron 30.0%
CATTCATACAGAATGATCAT+AGG + Chr3:1780562-1780581 None:intergenic 30.0%
CGTAAGTTAACTTCAATCTT+AGG - Chr3:1780014-1780033 MsG0380011581.01.T01:intron 30.0%
GAAGAAATGTCCTTAAACTA+GGG + Chr3:1780498-1780517 None:intergenic 30.0%
GTTAAAATATTAGCTCAACC+TGG - Chr3:1780934-1780953 MsG0380011581.01.T01:intron 30.0%
TAATACAAAAACTTCAGTCC+TGG - Chr3:1781148-1781167 MsG0380011581.01.T01:intron 30.0%
TAATGTGTTAAGTCTGATCA+AGG + Chr3:1781194-1781213 None:intergenic 30.0%
TAGCTTCTGTAAAATCACAA+TGG + Chr3:1779361-1779380 None:intergenic 30.0%
TATATCAATGTTGTCAACAG+TGG - Chr3:1779455-1779474 MsG0380011581.01.T01:intron 30.0%
TCCATTACAATCAAGTAATG+AGG + Chr3:1781948-1781967 None:intergenic 30.0%
TGACATTGAAATTTGACACT+TGG - Chr3:1780153-1780172 MsG0380011581.01.T01:intron 30.0%
! AAATCTTGCCAGAATGTTTT+TGG - Chr3:1779735-1779754 MsG0380011581.01.T01:intron 30.0%
! ATCTTTTGATCTGTAACCTA+TGG - Chr3:1779120-1779139 MsG0380011581.01.T01:CDS 30.0%
! ATGGAAGAAGATTTGGAATT+TGG - Chr3:1778867-1778886 MsG0380011581.01.T01:three_prime_UTR 30.0%
! CATTACTTGATTGTAATGGA+TGG - Chr3:1781948-1781967 MsG0380011581.01.T01:CDS 30.0%
! TGAATTTTTGTGCAATTTCG+CGG + Chr3:1779041-1779060 None:intergenic 30.0%
! TGGAAGAAGATTTGGAATTT+GGG - Chr3:1778868-1778887 MsG0380011581.01.T01:three_prime_UTR 30.0%
! TTATCCGTGCAAAATTTTCA+AGG + Chr3:1781343-1781362 None:intergenic 30.0%
! TTGACCTTGAAAATTTTGCA+CGG - Chr3:1781336-1781355 MsG0380011581.01.T01:intron 30.0%
!! AAGCTAAAAAGTGTAGCTTT+TGG - Chr3:1779375-1779394 MsG0380011581.01.T01:intron 30.0%
!! ACTGTTTTTCTTAGTGTGAT+CGG + Chr3:1781236-1781255 None:intergenic 30.0%
!! AGCTTTTGGAAAATCACAAT+AGG - Chr3:1779389-1779408 MsG0380011581.01.T01:intron 30.0%
!! ATTGAAGTGTTTTGTTAAGG+TGG - Chr3:1780748-1780767 MsG0380011581.01.T01:intron 30.0%
!! GATTGTAATGGATGGTTATT+TGG - Chr3:1781956-1781975 MsG0380011581.01.T01:CDS 30.0%
AACTATGTGTGTTTGGTATC+AGG - Chr3:1779310-1779329 MsG0380011581.01.T01:CDS 35.0%
ACATAGTAACTTGATCCTGT+TGG - Chr3:1780820-1780839 MsG0380011581.01.T01:intron 35.0%
ACTATGTGTGTTTGGTATCA+GGG - Chr3:1779311-1779330 MsG0380011581.01.T01:CDS 35.0%
CATGTTTGTTCAACCTGTTA+AGG - Chr3:1780898-1780917 MsG0380011581.01.T01:intron 35.0%
CCTCGTTTATACCAAGATTA+AGG - Chr3:1781015-1781034 MsG0380011581.01.T01:intron 35.0%
CCTTAATCTTGGTATAAACG+AGG + Chr3:1781018-1781037 None:intergenic 35.0%
GAATTAAAGGAACATCCTTG+AGG + Chr3:1780878-1780897 None:intergenic 35.0%
GCATTATTGGTATATCGAGT+GGG - Chr3:1780679-1780698 MsG0380011581.01.T01:intron 35.0%
GCTACATTTAGATATTCACC+AGG + Chr3:1780955-1780974 None:intergenic 35.0%
GGAAGAAAAAGCCTTAATCT+TGG + Chr3:1781029-1781048 None:intergenic 35.0%
TAGTACCACATCTCAGAATT+AGG + Chr3:1779769-1779788 None:intergenic 35.0%
TGAAGCAGCAGTCAAAATAA+TGG + Chr3:1779807-1779826 None:intergenic 35.0%
TGCATTATTGGTATATCGAG+TGG - Chr3:1780678-1780697 MsG0380011581.01.T01:intron 35.0%
TTGCACGGATAACATGATAA+TGG - Chr3:1781351-1781370 MsG0380011581.01.T01:intron 35.0%
! AAGTTTTCTGATTTTGCACC+AGG + Chr3:1781169-1781188 None:intergenic 35.0%
! AGATTTGGAATTTGGGAAGA+AGG - Chr3:1778875-1778894 MsG0380011581.01.T01:three_prime_UTR 35.0%
! CTTAACAGGTTGAACAAACA+TGG + Chr3:1780900-1780919 None:intergenic 35.0%
! TTTTCTGACTACATGACTTC+TGG - Chr3:1780183-1780202 MsG0380011581.01.T01:intron 35.0%
!! TACCTCAAATCAGCTGTTTT+CGG - Chr3:1781064-1781083 MsG0380011581.01.T01:intron 35.0%
!! TTTGACCTAATTCTGAGATG+TGG - Chr3:1779761-1779780 MsG0380011581.01.T01:intron 35.0%
!!! ACTGAGTCATTTTTAGCCAT+AGG + Chr3:1779139-1779158 None:intergenic 35.0%
!!! AGTAACGAACCTTTTGAGTT+TGG + Chr3:1779006-1779025 None:intergenic 35.0%
AAACTACCCTAATCCAACCA+AGG + Chr3:1781120-1781139 None:intergenic 40.0%
AACTACCCTAATCCAACCAA+GGG + Chr3:1781119-1781138 None:intergenic 40.0%
ACAACCAGTGGAATGTACAT+AGG - Chr3:1781823-1781842 MsG0380011581.01.T01:intron 40.0%
ACTGTATAAAAGTCCCGTGT+AGG + Chr3:1779278-1779297 None:intergenic 40.0%
ATAACAGTCATCTTGCTCTC+TGG + Chr3:1779170-1779189 None:intergenic 40.0%
CAAACAAAGAGAGCCTTAAC+AGG + Chr3:1780914-1780933 None:intergenic 40.0%
CCTTCAGCTGTTAAAGAAAG+CGG - Chr3:1781505-1781524 MsG0380011581.01.T01:intron 40.0%
CGCTTTCTTTAACAGCTGAA+GGG + Chr3:1781507-1781526 None:intergenic 40.0%
CTGGCAAGATTTACACGTTT+GGG + Chr3:1779727-1779746 None:intergenic 40.0%
CTGTTAAGGCTCTCTTTGTT+TGG - Chr3:1780912-1780931 MsG0380011581.01.T01:intron 40.0%
CTTCAGCTGTTAAAGAAAGC+GGG - Chr3:1781506-1781525 MsG0380011581.01.T01:intron 40.0%
CTTCAGTGATCTCCTTAACA+TGG + Chr3:1781601-1781620 None:intergenic 40.0%
GAACAGAGTAAATCAGTCTG+TGG + Chr3:1779873-1779892 None:intergenic 40.0%
GAGGTAGCATGTCATATAGA+AGG + Chr3:1781050-1781069 None:intergenic 40.0%
GCTGTGAATGAAGCTATTAG+AGG - Chr3:1781665-1781684 MsG0380011581.01.T01:intron 40.0%
GGATTTGTGCTAGATCAATG+CGG + Chr3:1780428-1780447 None:intergenic 40.0%
TAACACCCTTGGTTGGATTA+GGG - Chr3:1781111-1781130 MsG0380011581.01.T01:intron 40.0%
TAACAGTCATCTTGCTCTCT+GGG + Chr3:1779169-1779188 None:intergenic 40.0%
TATGAACTGTGTAACACCCT+TGG - Chr3:1781100-1781119 MsG0380011581.01.T01:intron 40.0%
TCTGGCAAGATTTACACGTT+TGG + Chr3:1779728-1779747 None:intergenic 40.0%
TGAAATTTGACACTTGGCAG+TGG - Chr3:1780159-1780178 MsG0380011581.01.T01:intron 40.0%
TGCTCAGTGCTAACAGATAT+TGG - Chr3:1781791-1781810 MsG0380011581.01.T01:intron 40.0%
TTCGATAAACGACGACACAA+TGG - Chr3:1778899-1778918 MsG0380011581.01.T01:three_prime_UTR 40.0%
TTTAGCATAGGTCCGTGAAA+TGG - Chr3:1780374-1780393 MsG0380011581.01.T01:intron 40.0%
! AAGCAAAACAGCGATTTTGG+TGG + Chr3:1778940-1778959 None:intergenic 40.0%
! AATATACCGTAACACCGGTT+AGG + Chr3:1779668-1779687 None:intergenic 40.0%
! ACGAAGCAAAACAGCGATTT+TGG + Chr3:1778943-1778962 None:intergenic 40.0%
! TAGTTTGTACAAGCGTGTTG+CGG - Chr3:1779499-1779518 MsG0380011581.01.T01:intron 40.0%
! TCTGAGATGTGGTACTATAG+CGG - Chr3:1779772-1779791 MsG0380011581.01.T01:intron 40.0%
!! TTCCGAAAACAGCTGATTTG+AGG + Chr3:1781069-1781088 None:intergenic 40.0%
AACTGTGTAACACCCTTGGT+TGG - Chr3:1781104-1781123 MsG0380011581.01.T01:intron 45.0%
AAGGAGATCACTGAAGCTTC+TGG - Chr3:1781605-1781624 MsG0380011581.01.T01:intron 45.0%
AAGGCGAAAAATCGGAGTGA+TGG - Chr3:1778848-1778867 MsG0380011581.01.T01:three_prime_UTR 45.0%
ACATTAAACGAGGAGGTCTC+GGG + Chr3:1779232-1779251 None:intergenic 45.0%
AGATCAATGCGGCTATAGTC+AGG + Chr3:1780417-1780436 None:intergenic 45.0%
AGCTGTTAAAGAAAGCGGGT+CGG - Chr3:1781510-1781529 MsG0380011581.01.T01:intron 45.0%
AGGAGATCACTGAAGCTTCT+GGG - Chr3:1781606-1781625 MsG0380011581.01.T01:intron 45.0%
ATCATGGCTTACCAGTCGTT+CGG + Chr3:1781540-1781559 None:intergenic 45.0%
ATCGAAGTTTCGTACCCTCA+AGG - Chr3:1780860-1780879 MsG0380011581.01.T01:intron 45.0%
ATGTGGTACTATAGCGGTTG+CGG - Chr3:1779778-1779797 MsG0380011581.01.T01:intron 45.0%
ATGTGTGTTTGGTATCAGGG+TGG - Chr3:1779314-1779333 MsG0380011581.01.T01:CDS 45.0%
CAGTGCTAACAGATATTGGC+AGG - Chr3:1781795-1781814 MsG0380011581.01.T01:intron 45.0%
CCGCTTTCTTTAACAGCTGA+AGG + Chr3:1781508-1781527 None:intergenic 45.0%
CCTGTTCTTGAACAGCTCTA+AGG + Chr3:1780449-1780468 None:intergenic 45.0%
CCTTAGAGCTGTTCAAGAAC+AGG - Chr3:1780446-1780465 MsG0380011581.01.T01:CDS 45.0%
CTAAGCGACATTAAACGAGG+AGG + Chr3:1779239-1779258 None:intergenic 45.0%
CTCGCCGTGATACTAAACAT+AGG - Chr3:1779431-1779450 MsG0380011581.01.T01:intron 45.0%
CTGACTACATGACTTCTGGA+GGG - Chr3:1780187-1780206 MsG0380011581.01.T01:intron 45.0%
GAAACAGCGACTCCATTTCA+CGG + Chr3:1780389-1780408 None:intergenic 45.0%
GACATTAAACGAGGAGGTCT+CGG + Chr3:1779233-1779252 None:intergenic 45.0%
GAGCTAAGCGACATTAAACG+AGG + Chr3:1779242-1779261 None:intergenic 45.0%
GATCAATGCGGCTATAGTCA+GGG + Chr3:1780416-1780435 None:intergenic 45.0%
GCATGAGTGTGTCCATGTTA+AGG - Chr3:1781586-1781605 MsG0380011581.01.T01:intron 45.0%
GGAAAAGCAGAAACTGCATC+TGG - Chr3:1780467-1780486 MsG0380011581.01.T01:intron 45.0%
GGCAGAACCATCTAGTATAG+CGG + Chr3:1779831-1779850 None:intergenic 45.0%
GTAACACCCTTGGTTGGATT+AGG - Chr3:1781110-1781129 MsG0380011581.01.T01:intron 45.0%
GTGAAATGGAGTCGCTGTTT+CGG - Chr3:1780388-1780407 MsG0380011581.01.T01:CDS 45.0%
TCTGACTACATGACTTCTGG+AGG - Chr3:1780186-1780205 MsG0380011581.01.T01:intron 45.0%
TCTGGTAAGCCCCTAGTTTA+AGG - Chr3:1780485-1780504 MsG0380011581.01.T01:intron 45.0%
TGTGTGTTTGGTATCAGGGT+GGG - Chr3:1779315-1779334 MsG0380011581.01.T01:CDS 45.0%
TTGGCTTATCAGCAGCTTTG+TGG - Chr3:1780213-1780232 MsG0380011581.01.T01:intron 45.0%
! CACGTTTGGGCTTTTCAGTT+CGG + Chr3:1779714-1779733 None:intergenic 45.0%
! CGGAGTGATGGAAGAAGATT+TGG - Chr3:1778860-1778879 MsG0380011581.01.T01:three_prime_UTR 45.0%
! TGACTACATGACTTCTGGAG+GGG - Chr3:1780188-1780207 MsG0380011581.01.T01:intron 45.0%
!! TGAAGCTATTAGAGGTGTCC+AGG - Chr3:1781673-1781692 MsG0380011581.01.T01:intron 45.0%
!!! GCTTTTCAGTTCGGTGTTTC+AGG + Chr3:1779705-1779724 None:intergenic 45.0%
AAAGTCCCGTGTAGGTAGCT+CGG + Chr3:1779270-1779289 None:intergenic 50.0%
ACTGCAAGCAACGTCACTTG+AGG + Chr3:1781313-1781332 None:intergenic 50.0%
ATCAGTCTGTGGCGTCTACA+TGG + Chr3:1779862-1779881 None:intergenic 50.0%
CAAGTGACGTTGCTTGCAGT+TGG - Chr3:1781313-1781332 MsG0380011581.01.T01:intron 50.0%
GCTTCAGCCGCTATACTAGA+TGG - Chr3:1779821-1779840 MsG0380011581.01.T01:intron 50.0%
GGGTGGGTATGTCAGAATCA+CGG - Chr3:1779331-1779350 MsG0380011581.01.T01:CDS 50.0%
TGATGACCATGACAGCATCC+TGG + Chr3:1781694-1781713 None:intergenic 50.0%
TGCGCCTATGTACATTCCAC+TGG + Chr3:1781830-1781849 None:intergenic 50.0%
TGGACACACTCATGCTCTGT+TGG + Chr3:1781581-1781600 None:intergenic 50.0%
TGGCAGGTGTTTACAACCAG+TGG - Chr3:1781811-1781830 MsG0380011581.01.T01:intron 50.0%
TGGGACTGAAGAAGCAGAAG+CGG - Chr3:1781625-1781644 MsG0380011581.01.T01:intron 50.0%
! CATGACTTCTGGAGGGGAAT+TGG - Chr3:1780194-1780213 MsG0380011581.01.T01:intron 50.0%
! GAGAAGCCTAACCGGTGTTA+CGG - Chr3:1779659-1779678 MsG0380011581.01.T01:intron 50.0%
! GCTTATCAGCAGCTTTGTGG+TGG - Chr3:1780216-1780235 MsG0380011581.01.T01:intron 50.0%
ACCAACCGAGCTACCTACAC+GGG - Chr3:1779262-1779281 MsG0380011581.01.T01:CDS 55.0%
AGGTGTCCAGGATGCTGTCA+TGG - Chr3:1781685-1781704 MsG0380011581.01.T01:intron 55.0%
CACCAACCGAGCTACCTACA+CGG - Chr3:1779261-1779280 MsG0380011581.01.T01:CDS 55.0%
GACAGCGAGAGAAGCCTAAC+CGG - Chr3:1779651-1779670 MsG0380011581.01.T01:intron 55.0%
GGAGGTCTCGGGTTTATCTC+CGG + Chr3:1779221-1779240 None:intergenic 55.0%
GGCGTCTACATGGCACACAA+TGG + Chr3:1779852-1779871 None:intergenic 55.0%
TGGCTTACCAGTCGTTCGGA+TGG + Chr3:1781536-1781555 None:intergenic 55.0%
TCCCGTGTAGGTAGCTCGGT+TGG + Chr3:1779266-1779285 None:intergenic 60.0%
GGGTCGGCCATCCGAACGAC+TGG - Chr3:1781526-1781545 MsG0380011581.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 1778843 1782023 1778843 ID=MsG0380011581.01;Name=MsG0380011581.01
Chr3 mRNA 1778843 1782023 1778843 ID=MsG0380011581.01.T01;Parent=MsG0380011581.01;Name=MsG0380011581.01.T01;_AED=0.37;_eAED=0.38;_QI=0|1|0.75|1|1|1|4|257|213
Chr3 exon 1778843 1779369 1778843 ID=MsG0380011581.01.T01:exon:1343;Parent=MsG0380011581.01.T01
Chr3 exon 1780378 1780482 1780378 ID=MsG0380011581.01.T01:exon:1342;Parent=MsG0380011581.01.T01
Chr3 exon 1780594 1780687 1780594 ID=MsG0380011581.01.T01:exon:1341;Parent=MsG0380011581.01.T01
Chr3 exon 1781851 1782023 1781851 ID=MsG0380011581.01.T01:exon:1340;Parent=MsG0380011581.01.T01
Chr3 CDS 1781851 1782023 1781851 ID=MsG0380011581.01.T01:cds;Parent=MsG0380011581.01.T01
Chr3 CDS 1780594 1780687 1780594 ID=MsG0380011581.01.T01:cds;Parent=MsG0380011581.01.T01
Chr3 CDS 1780378 1780482 1780378 ID=MsG0380011581.01.T01:cds;Parent=MsG0380011581.01.T01
Chr3 CDS 1779100 1779369 1779100 ID=MsG0380011581.01.T01:cds;Parent=MsG0380011581.01.T01
Chr3 three_prime_UTR 1778843 1779099 1778843 ID=MsG0380011581.01.T01:three_prime_utr;Parent=MsG0380011581.01.T01
Gene Sequence

>MsG0380011581.01.T01

ATGAAAAGGCGAAAAATCGGAGTGATGGAAGAAGATTTGGAATTTGGGAAGAAGGTTTCGATAAACGACGACACAATGGAAGTAGTAGTTGATTCCACCAAAATCGCTGTTTTGCTTCGTAGTTTTCTCGATATTCAACAACGCAGAGCTCAAGCTTATTCCAAACTCAAAAGTGGATTTTCTGACTACATGACTTCTGGAGGGGAATTGGCTTATCAGCAGCTTTGTGGTGGAATCACTTCAGAGTTTAATGATTGCTCAAAAAAGGTCCGTGAAATGGAGTCGCTGTTTCGGAGCCCTGACTATAGCCGCATTGATCTAGCACAAATCCTTAGAGCTGTTCAAGAACAGGAAAAGCAGAAACTGCATCTGACAGCTACCCTTCAGCTGTTAAAGAAAGCGGGTCGGCCATCCGAACGACTGGTAAGCCATGATAATTGCAAATTTACAAAGCCAACAGAGCATGAGTGTGTCCATGTTAAGGAGATCACTGAAGCTTCTGGGACTGAAGAAGCAGAAGCGGATGCCGAGTATGATAATGCTGTGAATGAAGCTATTAGAGGTGTCCAGGATGCTGTCATGGTCATCAATGAACATCTAGAAGAAGTCAGATATGAGATTGAAGCACTTGAAGCAGAGTGA

Protein sequence

>MsG0380011581.01.T01

MKRRKIGVMEEDLEFGKKVSINDDTMEVVVDSTKIAVLLRSFLDIQQRRAQAYSKLKSGFSDYMTSGGELAYQQLCGGITSEFNDCSKKVREMESLFRSPDYSRIDLAQILRAVQEQEKQKLHLTATLQLLKKAGRPSERLVSHDNCKFTKPTEHECVHVKEITEASGTEEAEADAEYDNAVNEAIRGVQDAVMVINEHLEEVRYEIEALEAE*