AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023553.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023553.01.T01 MTR_8g096180 82.870 216 31 1 4 213 2 217 9.04e-130 365
MsG0480023553.01.T01 MTR_8g096180 79.204 226 31 2 4 213 2 227 3.42e-126 357
MsG0480023553.01.T01 MTR_8g096170 77.885 208 40 1 12 213 13 220 4.51e-119 338
MsG0480023553.01.T01 MTR_3g098530 62.319 207 78 0 7 213 31 237 8.34e-97 283
MsG0480023553.01.T01 MTR_1g032580 43.429 175 93 3 43 212 29 202 3.74e-44 148
MsG0480023553.01.T01 MTR_1g032580 43.226 155 82 3 63 212 1 154 5.84e-38 130
MsG0480023553.01.T01 MTR_1g022185 35.263 190 116 5 26 213 28 212 8.34e-30 112
MsG0480023553.01.T01 MTR_4g105460 29.878 164 113 2 41 203 69 231 5.83e-25 99.0
MsG0480023553.01.T01 MTR_4g105450 28.750 160 112 2 41 199 67 225 2.58e-23 94.4
MsG0480023553.01.T01 MTR_5g062310 29.570 186 125 4 29 213 34 214 1.19e-20 88.6
MsG0480023553.01.T01 MTR_3g074050 29.651 172 116 4 43 213 49 216 2.63e-20 87.4
MsG0480023553.01.T01 MTR_3g074050 29.070 172 118 4 43 213 49 217 7.77e-20 86.3
MsG0480023553.01.T01 MTR_8g077700 31.746 189 122 5 27 213 29 212 1.08e-19 85.1
MsG0480023553.01.T01 MTR_7g087500 29.651 172 117 3 43 213 44 212 1.23e-19 85.5
MsG0480023553.01.T01 MTR_8g077700 31.746 189 122 5 27 213 57 240 3.18e-19 84.3
MsG0480023553.01.T01 MTR_1g104540 27.222 180 127 3 36 212 30 208 2.35e-18 82.8
MsG0480023553.01.T01 MTR_4g105460 31.159 138 92 3 41 177 69 204 6.86e-16 73.6
MsG0480023553.01.T01 MTR_7g070480 26.961 204 132 5 22 210 75 276 6.99e-16 75.9
MsG0480023553.01.T01 MTR_3g097350 28.108 185 119 5 43 213 247 431 2.68e-15 74.3
MsG0480023553.01.T01 MTR_4g013300 29.508 183 111 6 43 210 123 302 1.80e-14 71.6
MsG0480023553.01.T01 MTR_5g062310 27.632 152 106 3 63 213 1 149 3.34e-14 69.7
MsG0480023553.01.T01 MTR_4g033435 30.000 190 114 7 40 213 266 452 3.47e-14 70.9
MsG0480023553.01.T01 MTR_4g033435 30.000 190 114 7 40 213 266 452 3.79e-14 70.9
MsG0480023553.01.T01 MTR_3g074050 27.632 152 106 4 63 213 1 149 4.59e-14 69.3
MsG0480023553.01.T01 MTR_3g117090 29.412 204 119 5 33 211 78 281 3.11e-13 68.2
MsG0480023553.01.T01 MTR_3g117090 29.412 204 119 5 33 211 78 281 3.67e-13 68.2
MsG0480023553.01.T01 MTR_4g070720 27.451 204 123 7 33 211 77 280 7.66e-13 67.0
MsG0480023553.01.T01 MTR_3g112150 27.941 204 122 7 33 211 74 277 6.89e-12 64.3
MsG0480023553.01.T01 MTR_4g070810 28.780 205 119 8 33 211 88 291 6.83e-11 61.6
MsG0480023553.01.T01 MTR_3g060670 25.521 192 106 7 45 211 33 212 7.78e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023553.01.T01 AT1G01630 53.182 220 96 2 1 213 1 220 1.81e-84 251
MsG0480023553.01.T01 AT1G14820 41.270 189 103 4 31 212 1 188 6.64e-39 134
MsG0480023553.01.T01 AT1G14820 41.270 189 103 4 31 212 1 188 6.64e-39 134
MsG0480023553.01.T01 AT1G14820 42.373 177 96 3 42 213 27 202 7.03e-39 134
MsG0480023553.01.T01 AT4G08690 31.183 186 122 4 29 213 31 211 1.07e-26 104
MsG0480023553.01.T01 AT4G08690 31.183 186 122 4 29 213 31 211 1.07e-26 104
MsG0480023553.01.T01 AT4G08690 31.183 186 122 4 29 213 31 211 1.07e-26 104
MsG0480023553.01.T01 AT4G36640 33.333 204 123 6 18 213 12 210 2.32e-26 103
MsG0480023553.01.T01 AT4G36640 33.333 204 123 6 18 213 12 210 2.32e-26 103
MsG0480023553.01.T01 AT1G75170 34.104 173 109 4 43 213 44 213 1.20e-25 101
MsG0480023553.01.T01 AT1G75170 34.104 173 109 4 43 213 44 213 1.20e-25 101
MsG0480023553.01.T01 AT5G63060 31.928 166 107 3 41 203 70 232 8.63e-23 93.2
MsG0480023553.01.T01 AT5G63060 30.488 164 112 2 41 203 35 197 9.21e-23 92.4
MsG0480023553.01.T01 AT1G22180 30.645 186 123 4 29 213 34 214 4.74e-21 89.4
MsG0480023553.01.T01 AT1G22180 30.645 186 123 4 29 213 34 214 4.74e-21 89.4
MsG0480023553.01.T01 AT4G36640 30.719 153 101 4 63 213 1 150 9.98e-17 76.3
MsG0480023553.01.T01 AT3G22410 25.405 185 134 3 29 212 19 200 1.29e-15 75.1
MsG0480023553.01.T01 AT1G75170 33.621 116 74 2 99 213 17 130 3.00e-15 72.0
MsG0480023553.01.T01 AT1G05370 26.257 179 129 2 36 212 33 210 3.25e-15 73.9
MsG0480023553.01.T01 AT1G22180 28.947 152 104 3 63 213 1 149 3.77e-15 72.4
MsG0480023553.01.T01 AT1G22180 28.947 152 104 3 63 213 1 149 3.77e-15 72.4
MsG0480023553.01.T01 AT4G09160 27.358 212 129 8 18 213 319 521 2.68e-14 71.6
MsG0480023553.01.T01 AT4G09160 27.358 212 129 8 18 213 294 496 2.78e-14 71.6
MsG0480023553.01.T01 AT4G09160 27.358 212 129 8 18 213 294 496 3.33e-14 71.2
MsG0480023553.01.T01 AT5G47730 26.966 178 116 3 48 211 41 218 4.74e-13 67.4
MsG0480023553.01.T01 AT5G47730 26.966 178 116 3 48 211 41 218 4.74e-13 67.4
MsG0480023553.01.T01 AT3G51670 27.072 181 117 4 43 210 82 260 1.43e-12 66.2
MsG0480023553.01.T01 AT5G47510 26.293 232 146 6 5 211 4 235 2.90e-11 62.4
MsG0480023553.01.T01 AT5G47510 26.293 232 146 6 5 211 4 235 3.89e-11 62.0
MsG0480023553.01.T01 AT5G47510 26.293 232 146 6 5 211 3 234 4.14e-11 62.0

Find 43 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTCCCCAATCTTTC+AGG 0.132673 4:-86810235 None:intergenic
CGACCAATACTTCTTGTCTT+TGG 0.277733 4:+86809265 MsG0480023553.01.T01:CDS
CTTCAGGAGCACTATTCTTC+AGG 0.284520 4:+86807768 MsG0480023553.01.T01:CDS
CTTCTGGACCTCTTGTCTTC+AGG 0.312293 4:+86807752 MsG0480023553.01.T01:CDS
TTGTCTTGTGCAATTTGATT+AGG 0.316642 4:-86809211 None:intergenic
GCTTCTGATAATGTGGCTTC+TGG 0.333569 4:+86807736 MsG0480023553.01.T01:CDS
ATAACGATATACCTGCAAAA+TGG 0.361491 4:-86810122 None:intergenic
GACCAATCTTGTCATGTCCT+TGG 0.383685 4:-86809243 None:intergenic
GGATTACTACCCTGAAAGAT+TGG 0.396743 4:+86810225 MsG0480023553.01.T01:intron
TGTTCCTCAAGTACTTGAAA+TGG 0.405903 4:+86809143 MsG0480023553.01.T01:CDS
TCTGATGATGCAGCTTCTGC+AGG 0.416094 4:+86807694 MsG0480023553.01.T01:CDS
AGACATTCATTTGTTCCAAA+TGG 0.425215 4:+86809166 MsG0480023553.01.T01:CDS
GATTACTACCCTGAAAGATT+GGG 0.426754 4:+86810226 MsG0480023553.01.T01:CDS
GATAGAGATATGGAACCATT+TGG 0.426836 4:-86809181 None:intergenic
ACCAATCTTGTCATGTCCTT+GGG 0.434729 4:-86809242 None:intergenic
CCAATACTTCTTGTCTTTGG+TGG 0.439235 4:+86809268 MsG0480023553.01.T01:CDS
AGGAACCTGTGATAGAGATA+TGG 0.459166 4:-86809191 None:intergenic
ACAACTTCCCCAATCTTTCA+GGG 0.493166 4:-86810234 None:intergenic
CTTGTCATGTCCTTGGGCGA+AGG 0.521048 4:-86809236 None:intergenic
AGCGATTTGCGTGGATACAT+TGG 0.523132 4:+86810091 MsG0480023553.01.T01:CDS
CCACCAAAGACAAGAAGTAT+TGG 0.525066 4:-86809268 None:intergenic
GCCCAAGGACATGACAAGAT+TGG 0.525216 4:+86809241 MsG0480023553.01.T01:CDS
TGACAACAAAACTAAGAAGA+AGG 0.549893 4:+86810315 MsG0480023553.01.T01:CDS
GTCTCCATTTCAAGTACTTG+AGG 0.552376 4:-86809147 None:intergenic
TGATGTATCAGCATGCCACC+TGG 0.557220 4:+86810016 MsG0480023553.01.T01:intron
TGGTTCCATATCTCTATCAC+AGG 0.560409 4:+86809186 MsG0480023553.01.T01:CDS
CAAGACAAGGCCTTCGCCCA+AGG 0.561144 4:+86809226 MsG0480023553.01.T01:CDS
TATAGCAGAACTCAAAGGAT+GGG 0.572999 4:+86810057 MsG0480023553.01.T01:CDS
GTATAGCAGAACTCAAAGGA+TGG 0.600715 4:+86810056 MsG0480023553.01.T01:CDS
GATGTATCAGCATGCCACCT+GGG 0.601615 4:+86810017 MsG0480023553.01.T01:intron
TAATCAAATTGCACAAGACA+AGG 0.608427 4:+86809213 MsG0480023553.01.T01:CDS
TCGTGATTTAGATGTAGAGA+AGG 0.617213 4:+86809111 MsG0480023553.01.T01:CDS
ATAGTGCTCCTGAAGACAAG+AGG 0.620594 4:-86807760 None:intergenic
GTTGGTATAGCAGAACTCAA+AGG 0.623693 4:+86810052 MsG0480023553.01.T01:CDS
TTCTTGATAAACTATGTGCA+AGG 0.626670 4:+86809923 MsG0480023553.01.T01:CDS
TACTCAAATAGCGATTTGCG+TGG 0.626951 4:+86810082 MsG0480023553.01.T01:CDS
ATTACTACCCTGAAAGATTG+GGG 0.630792 4:+86810227 MsG0480023553.01.T01:CDS
ATGTATCAGCATGCCACCTG+GGG 0.634138 4:+86810018 MsG0480023553.01.T01:intron
ATAGCAGAACTCAAAGGATG+GGG 0.636851 4:+86810058 MsG0480023553.01.T01:CDS
TGGTGAAATGACTTCTGATG+AGG 0.640298 4:+86807666 None:intergenic
TGATGCAGCTTCTGATAATG+TGG 0.644924 4:+86807729 MsG0480023553.01.T01:CDS
ATATACCTGCAAAATGGAGA+GGG 0.661917 4:-86810116 None:intergenic
GATATACCTGCAAAATGGAG+AGG 0.677136 4:-86810117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATATAAAATTATTTGT+AGG + Chr4:86808762-86808781 MsG0480023553.01.T01:intron 10.0%
!! TTATGTTAAAAAAAAGTAAA+TGG - Chr4:86809675-86809694 None:intergenic 10.0%
!!! ATATATATATATATTTTGTG+TGG + Chr4:86808966-86808985 MsG0480023553.01.T01:intron 10.0%
!!! CTACTAATTTTTTTTTTTTT+GGG + Chr4:86808352-86808371 MsG0480023553.01.T01:intron 10.0%
!!! TAATCAACAATTAAATTTTT+AGG - Chr4:86808620-86808639 None:intergenic 10.0%
!!! TCTACTAATTTTTTTTTTTT+TGG + Chr4:86808351-86808370 MsG0480023553.01.T01:intron 10.0%
!!! TTTAATTGTTGATTATAATA+AGG + Chr4:86808625-86808644 MsG0480023553.01.T01:intron 10.0%
!! AGGTATTAAAAATTGTAAAT+TGG - Chr4:86807970-86807989 None:intergenic 15.0%
!! ATAAAATTAATTTAAACACC+TGG + Chr4:86808871-86808890 MsG0480023553.01.T01:intron 15.0%
!! ATTATTATACTTAAATTTGC+TGG + Chr4:86809002-86809021 MsG0480023553.01.T01:intron 15.0%
!! ATTTAATGTTAACTAGATAT+AGG - Chr4:86809383-86809402 None:intergenic 15.0%
!! CTCAAAAGAAATTATTAAAT+AGG - Chr4:86808789-86808808 None:intergenic 15.0%
!! TAAAAAGTTACATCATTAAT+TGG - Chr4:86807910-86807929 None:intergenic 15.0%
!! TTTAATGTTAACTAGATATA+GGG - Chr4:86809382-86809401 None:intergenic 15.0%
!!! AATTTTTTTTTTTTTGGGTT+AGG + Chr4:86808357-86808376 MsG0480023553.01.T01:intron 15.0%
!!! CTATTTAATAATTTCTTTTG+AGG + Chr4:86808787-86808806 MsG0480023553.01.T01:intron 15.0%
!! ATTATGTAATGTTTAATTCC+TGG + Chr4:86809784-86809803 MsG0480023553.01.T01:intron 20.0%
!! GATTATGATTGTTAATTTCT+TGG + Chr4:86810197-86810216 MsG0480023553.01.T01:intron 20.0%
!! TATTTAGCACCATATTAAAT+AGG + Chr4:86808427-86808446 MsG0480023553.01.T01:intron 20.0%
!!! CATATTAAATGTGTTGTTTT+AGG + Chr4:86808305-86808324 MsG0480023553.01.T01:intron 20.0%
!!! TTTTCTGAAACAATTATATC+TGG + Chr4:86808250-86808269 MsG0480023553.01.T01:intron 20.0%
! ATATATTATACTCCACAATG+AGG - Chr4:86808457-86808476 None:intergenic 25.0%
! ATCTCTATTTGAGTATTAGA+GGG + Chr4:86809607-86809626 MsG0480023553.01.T01:intron 25.0%
! ATGAAAAATAAAGAGAGAGA+GGG - Chr4:86808696-86808715 None:intergenic 25.0%
! ATTGGTTAAGAATATGTACT+TGG + Chr4:86809433-86809452 MsG0480023553.01.T01:intron 25.0%
! CACACTTTCATAAAAATGTA+CGG - Chr4:86810274-86810293 None:intergenic 25.0%
! CATTAGTAAATGGTAATAAG+GGG + Chr4:86809025-86809044 MsG0480023553.01.T01:intron 25.0%
! GAATTTGTGCAATAATCATT+TGG + Chr4:86809579-86809598 MsG0480023553.01.T01:intron 25.0%
! GCATTAGTAAATGGTAATAA+GGG + Chr4:86809024-86809043 MsG0480023553.01.T01:intron 25.0%
! TAATATTTGTTCAAGTGTAC+AGG - Chr4:86807941-86807960 None:intergenic 25.0%
! TAATTTAAACACCTGGTTTA+AGG + Chr4:86808878-86808897 MsG0480023553.01.T01:intron 25.0%
! TATATTATACTCCACAATGA+GGG - Chr4:86808456-86808475 None:intergenic 25.0%
! TTGAGAAAATTGTTAATGAG+TGG - Chr4:86809861-86809880 None:intergenic 25.0%
!! TTAATTTCACTATTGGTTAC+AGG + Chr4:86809051-86809070 MsG0480023553.01.T01:intron 25.0%
!! TTGTTGATTATAATAAGGAC+CGG + Chr4:86808630-86808649 MsG0480023553.01.T01:intron 25.0%
!!! AAAGAGTTTTGATGATAACA+AGG - Chr4:86807990-86808009 None:intergenic 25.0%
!!! AATTGACTTTTTAGGTTCAT+TGG + Chr4:86808539-86808558 MsG0480023553.01.T01:intron 25.0%
!!! AGTTTTATAGTACTGGAATA+AGG - Chr4:86809958-86809977 None:intergenic 25.0%
!!! ATGATGTAACTTTTTAACTG+TGG + Chr4:86807914-86807933 MsG0480023553.01.T01:intron 25.0%
!!! ATTTCACAGTTTTATAGTAC+TGG - Chr4:86809965-86809984 None:intergenic 25.0%
!!! TAAATGTGTTGTTTTAGGTT+AGG + Chr4:86808310-86808329 MsG0480023553.01.T01:intron 25.0%
!!! TAGTATGTAATATTGGTTTG+TGG + Chr4:86809810-86809829 MsG0480023553.01.T01:intron 25.0%
!!! TTAGTTTTGTTGTCAATGAA+CGG - Chr4:86810310-86810329 None:intergenic 25.0%
AATCGTAGTACTTTGTAAGT+TGG - Chr4:86808145-86808164 None:intergenic 30.0%
AGACATTCATTTGTTCCAAA+TGG + Chr4:86809166-86809185 MsG0480023553.01.T01:CDS 30.0%
AGTATAATATATACTCCCTC+CGG + Chr4:86808465-86808484 MsG0480023553.01.T01:intron 30.0%
ATAACGATATACCTGCAAAA+TGG - Chr4:86810125-86810144 None:intergenic 30.0%
ATATTATACTCCACAATGAG+GGG - Chr4:86808455-86808474 None:intergenic 30.0%
ATTACTTAGACCATCCATAA+TGG + Chr4:86808391-86808410 MsG0480023553.01.T01:intron 30.0%
ATTGTTAATTTCTTGGATGC+AGG + Chr4:86810204-86810223 MsG0480023553.01.T01:intron 30.0%
ATTTGATACTCTACGTATAC+CGG - Chr4:86808487-86808506 None:intergenic 30.0%
CATGAAAAATAAAGAGAGAG+AGG - Chr4:86808697-86808716 None:intergenic 30.0%
GATCTCTATTTGAGTATTAG+AGG + Chr4:86809606-86809625 MsG0480023553.01.T01:intron 30.0%
GGCATTAGTAAATGGTAATA+AGG + Chr4:86809023-86809042 MsG0480023553.01.T01:intron 30.0%
GGGGAAATTAATTTCACTAT+TGG + Chr4:86809044-86809063 MsG0480023553.01.T01:intron 30.0%
GTACTACAAGGTAATTATGT+TGG - Chr4:86808040-86808059 None:intergenic 30.0%
GTTATCATCAAAACTCTTTG+AGG + Chr4:86807991-86808010 MsG0480023553.01.T01:intron 30.0%
TAATCAAATTGCACAAGACA+AGG + Chr4:86809213-86809232 MsG0480023553.01.T01:CDS 30.0%
TGAAGCTTAGATGATTCTAA+AGG - Chr4:86807855-86807874 None:intergenic 30.0%
TGACAACAAAACTAAGAAGA+AGG + Chr4:86810315-86810334 MsG0480023553.01.T01:CDS 30.0%
TGTTAACTAGATATAGGGAT+AGG - Chr4:86809377-86809396 None:intergenic 30.0%
TTCTTGATAAACTATGTGCA+AGG + Chr4:86809923-86809942 MsG0480023553.01.T01:CDS 30.0%
TTGTCTTGTGCAATTTGATT+AGG - Chr4:86809214-86809233 None:intergenic 30.0%
! AAAAAAGTAAATGGTAGCGA+AGG - Chr4:86809666-86809685 None:intergenic 30.0%
! AAAAAGTAAATGGTAGCGAA+GGG - Chr4:86809665-86809684 None:intergenic 30.0%
! AGACATTTTCAAAAGAAGGA+TGG + Chr4:86809292-86809311 MsG0480023553.01.T01:CDS 30.0%
! AGCAATTTTCTTTGTGATAC+AGG + Chr4:86809886-86809905 MsG0480023553.01.T01:intron 30.0%
! CGTACATTTTTATGAAAGTG+TGG + Chr4:86810272-86810291 MsG0480023553.01.T01:CDS 30.0%
! GCAATTTTCTTTGTGATACA+GGG + Chr4:86809887-86809906 MsG0480023553.01.T01:intron 30.0%
! GTCAATTGTTGCTTGTAATA+AGG - Chr4:86808526-86808545 None:intergenic 30.0%
! TGGAAGACATTTTCAAAAGA+AGG + Chr4:86809288-86809307 MsG0480023553.01.T01:CDS 30.0%
!! AATTTGCTGGCATTAGTAAA+TGG + Chr4:86809015-86809034 MsG0480023553.01.T01:intron 30.0%
!! CAAGCAACAATTGACTTTTT+AGG + Chr4:86808531-86808550 MsG0480023553.01.T01:intron 30.0%
!! GCTTTGATTGATTTTGTGAA+TGG + Chr4:86808114-86808133 MsG0480023553.01.T01:intron 30.0%
!! TGAGAGATTTTAGCCATTAT+GGG - Chr4:86809481-86809500 None:intergenic 30.0%
!!! AATAATTTCTTTTGAGGTGC+TGG + Chr4:86808793-86808812 MsG0480023553.01.T01:intron 30.0%
!!! ATAATTTCTTTTGAGGTGCT+GGG + Chr4:86808794-86808813 MsG0480023553.01.T01:intron 30.0%
!!! CATTTTTTGATAGAAAGCTG+TGG + Chr4:86808092-86808111 MsG0480023553.01.T01:intron 30.0%
!!! CTCTCTCTCTTTATTTTTCA+TGG + Chr4:86808695-86808714 MsG0480023553.01.T01:intron 30.0%
!!! TAGTTTTGTTGTCAATGAAC+GGG - Chr4:86810309-86810328 None:intergenic 30.0%
AAAAGGCAACAAGTACTACA+AGG - Chr4:86808052-86808071 None:intergenic 35.0%
ATATACCTGCAAAATGGAGA+GGG - Chr4:86810119-86810138 None:intergenic 35.0%
ATTACTACCCTGAAAGATTG+GGG + Chr4:86810227-86810246 MsG0480023553.01.T01:CDS 35.0%
CAATATTACATACTAGCACC+AGG - Chr4:86809805-86809824 None:intergenic 35.0%
GATAGAGATATGGAACCATT+TGG - Chr4:86809184-86809203 None:intergenic 35.0%
GATTACTACCCTGAAAGATT+GGG + Chr4:86810226-86810245 MsG0480023553.01.T01:CDS 35.0%
TATAGCAGAACTCAAAGGAT+GGG + Chr4:86810057-86810076 MsG0480023553.01.T01:CDS 35.0%
TATCAAATGCATACTCCATC+CGG + Chr4:86808499-86808518 MsG0480023553.01.T01:intron 35.0%
TCATAATCCTTCGTTTCGAT+CGG - Chr4:86809729-86809748 None:intergenic 35.0%
TCGTGATTTAGATGTAGAGA+AGG + Chr4:86809111-86809130 MsG0480023553.01.T01:CDS 35.0%
TGATTATAATAAGGACCGGA+GGG + Chr4:86808634-86808653 MsG0480023553.01.T01:intron 35.0%
TGTGTGAATTGTGAAGTAGT+TGG + Chr4:86810158-86810177 MsG0480023553.01.T01:intron 35.0%
TGTTCCTCAAGTACTTGAAA+TGG + Chr4:86809143-86809162 MsG0480023553.01.T01:CDS 35.0%
TTACCGTAAAATGAGTGATG+TGG + Chr4:86808844-86808863 MsG0480023553.01.T01:intron 35.0%
TTGATTATAATAAGGACCGG+AGG + Chr4:86808633-86808652 MsG0480023553.01.T01:intron 35.0%
! AACTAGTCTCTTAATGCCAA+GGG - Chr4:86809524-86809543 None:intergenic 35.0%
! CTGGTGCTAGTATGTAATAT+TGG + Chr4:86809803-86809822 MsG0480023553.01.T01:intron 35.0%
! TGTCCACATCACTCATTTTA+CGG - Chr4:86808850-86808869 None:intergenic 35.0%
! TTAGAGGGTTAGTATACCAT+TGG + Chr4:86809622-86809641 MsG0480023553.01.T01:intron 35.0%
! TTGTTGCTTGTAATAAGGAC+CGG - Chr4:86808521-86808540 None:intergenic 35.0%
!! AGAGATTTTAGCCATTATGG+GGG - Chr4:86809479-86809498 None:intergenic 35.0%
!! CTGAGAGATTTTAGCCATTA+TGG - Chr4:86809482-86809501 None:intergenic 35.0%
!! GAGAGATTTTAGCCATTATG+GGG - Chr4:86809480-86809499 None:intergenic 35.0%
!! TTGTAGTACTTGTTGCCTTT+TGG + Chr4:86808051-86808070 MsG0480023553.01.T01:intron 35.0%
AACAACTTCCCCAATCTTTC+AGG - Chr4:86810238-86810257 None:intergenic 40.0%
AATCTCTCAGCATTTCTGCT+CGG + Chr4:86809492-86809511 MsG0480023553.01.T01:intron 40.0%
AATTCAAAGCCACAGCCAAA+AGG - Chr4:86808069-86808088 None:intergenic 40.0%
ACAACTTCCCCAATCTTTCA+GGG - Chr4:86810237-86810256 None:intergenic 40.0%
ACCAATCTTGTCATGTCCTT+GGG - Chr4:86809245-86809264 None:intergenic 40.0%
ACTTAGACCATCCATAATGG+TGG + Chr4:86808394-86808413 MsG0480023553.01.T01:intron 40.0%
AGGAACCTGTGATAGAGATA+TGG - Chr4:86809194-86809213 None:intergenic 40.0%
ATAGCAGAACTCAAAGGATG+GGG + Chr4:86810058-86810077 MsG0480023553.01.T01:CDS 40.0%
CCAACAGAAGTTAGCACAAT+TGG + Chr4:86809415-86809434 MsG0480023553.01.T01:intron 40.0%
CCAATACTTCTTGTCTTTGG+TGG + Chr4:86809268-86809287 MsG0480023553.01.T01:CDS 40.0%
CCAATTGTGCTAACTTCTGT+TGG - Chr4:86809418-86809437 None:intergenic 40.0%
CCTGGGGAAGAAAAATTTGT+TGG + Chr4:86810034-86810053 MsG0480023553.01.T01:CDS 40.0%
CGACCAATACTTCTTGTCTT+TGG + Chr4:86809265-86809284 MsG0480023553.01.T01:CDS 40.0%
CTTAGACCATCCATAATGGT+GGG + Chr4:86808395-86808414 MsG0480023553.01.T01:intron 40.0%
GATATACCTGCAAAATGGAG+AGG - Chr4:86810120-86810139 None:intergenic 40.0%
GGATTACTACCCTGAAAGAT+TGG + Chr4:86810225-86810244 MsG0480023553.01.T01:intron 40.0%
GTATAGCAGAACTCAAAGGA+TGG + Chr4:86810056-86810075 MsG0480023553.01.T01:CDS 40.0%
GTTGGTATAGCAGAACTCAA+AGG + Chr4:86810052-86810071 MsG0480023553.01.T01:CDS 40.0%
TACTCAAATAGCGATTTGCG+TGG + Chr4:86810082-86810101 MsG0480023553.01.T01:CDS 40.0%
TCATAAAAATGTACGGTGCG+TGG - Chr4:86810267-86810286 None:intergenic 40.0%
TGGTTCCATATCTCTATCAC+AGG + Chr4:86809186-86809205 MsG0480023553.01.T01:CDS 40.0%
! ACAAATTTTTCTTCCCCAGG+TGG - Chr4:86810034-86810053 None:intergenic 40.0%
! CAACTAGTCTCTTAATGCCA+AGG - Chr4:86809525-86809544 None:intergenic 40.0%
! CCAACAAATTTTTCTTCCCC+AGG - Chr4:86810037-86810056 None:intergenic 40.0%
! CCACCAAAGACAAGAAGTAT+TGG - Chr4:86809271-86809290 None:intergenic 40.0%
! GTCTCCATTTCAAGTACTTG+AGG - Chr4:86809150-86809169 None:intergenic 40.0%
! TGATGCAGCTTCTGATAATG+TGG + Chr4:86807729-86807748 MsG0480023553.01.T01:CDS 40.0%
! TTAAGGTGCTCTGTTGTAGA+TGG + Chr4:86808895-86808914 MsG0480023553.01.T01:intron 40.0%
! TTCAGGTGCACTATTTCTTC+AGG + Chr4:86807785-86807804 MsG0480023553.01.T01:intron 40.0%
!! TGAGGGGTGCCTATTTAATA+TGG - Chr4:86808439-86808458 None:intergenic 40.0%
AGCGATTTGCGTGGATACAT+TGG + Chr4:86810091-86810110 MsG0480023553.01.T01:CDS 45.0%
AGTTGGAAGCTTAGCACTCA+GGG + Chr4:86810175-86810194 MsG0480023553.01.T01:intron 45.0%
ATAGTGCTCCTGAAGACAAG+AGG - Chr4:86807763-86807782 None:intergenic 45.0%
ATCTCTCAGCATTTCTGCTC+GGG + Chr4:86809493-86809512 MsG0480023553.01.T01:intron 45.0%
GACCAATCTTGTCATGTCCT+TGG - Chr4:86809246-86809265 None:intergenic 45.0%
GATACTCTACGTATACCGGA+GGG - Chr4:86808483-86808502 None:intergenic 45.0%
GCTCTGTTGTAGATGGTCTT+AGG + Chr4:86808902-86808921 MsG0480023553.01.T01:intron 45.0%
TAAATAGGCACCCCTCATTG+TGG + Chr4:86808442-86808461 MsG0480023553.01.T01:intron 45.0%
TAGTTGGAAGCTTAGCACTC+AGG + Chr4:86810174-86810193 MsG0480023553.01.T01:intron 45.0%
TGATACTCTACGTATACCGG+AGG - Chr4:86808484-86808503 None:intergenic 45.0%
TGATCAACCGATCGAAACGA+AGG + Chr4:86809719-86809738 MsG0480023553.01.T01:intron 45.0%
TGCTTGTAATAAGGACCGGA+TGG - Chr4:86808517-86808536 None:intergenic 45.0%
! ACAACAGAGCACCTTAAACC+AGG - Chr4:86808892-86808911 None:intergenic 45.0%
! AGATGAAGCACCCACCATTA+TGG - Chr4:86808408-86808427 None:intergenic 45.0%
! CTGTTGTAGATGGTCTTAGG+TGG + Chr4:86808905-86808924 MsG0480023553.01.T01:intron 45.0%
! GCTTCTGATAATGTGGCTTC+TGG + Chr4:86807736-86807755 MsG0480023553.01.T01:CDS 45.0%
!! CTTCAGGAGCACTATTCTTC+AGG + Chr4:86807768-86807787 MsG0480023553.01.T01:CDS 45.0%
!! TACTTGTTGCCTTTTGGCTG+TGG + Chr4:86808057-86808076 MsG0480023553.01.T01:intron 45.0%
!!! TCAGGAGCGCTTTTACTTTC+AGG + Chr4:86807820-86807839 MsG0480023553.01.T01:intron 45.0%
!!! TTTCTTTTGAGGTGCTGGGT+TGG + Chr4:86808798-86808817 MsG0480023553.01.T01:intron 45.0%
AGCCATTATGGGGGATTCAC+AGG - Chr4:86809470-86809489 None:intergenic 50.0%
ATGTATCAGCATGCCACCTG+GGG + Chr4:86810018-86810037 MsG0480023553.01.T01:intron 50.0%
CTGAATTCCAGCATCTGCTG+CGG - Chr4:86808227-86808246 None:intergenic 50.0%
CTTCTGGACCTCTTGTCTTC+AGG + Chr4:86807752-86807771 MsG0480023553.01.T01:CDS 50.0%
GAGTAGGTGGCTATGGAGAA+GGG + Chr4:86808656-86808675 MsG0480023553.01.T01:intron 50.0%
GATGTATCAGCATGCCACCT+GGG + Chr4:86810017-86810036 MsG0480023553.01.T01:intron 50.0%
GCCATTATGGGGGATTCACA+GGG - Chr4:86809469-86809488 None:intergenic 50.0%
GCCCAAGGACATGACAAGAT+TGG + Chr4:86809241-86809260 MsG0480023553.01.T01:CDS 50.0%
TAATAAGGACCGGAGGGAGT+AGG + Chr4:86808640-86808659 MsG0480023553.01.T01:intron 50.0%
TCTCTCAGCATTTCTGCTCG+GGG + Chr4:86809494-86809513 MsG0480023553.01.T01:intron 50.0%
TGATGTATCAGCATGCCACC+TGG + Chr4:86810016-86810035 MsG0480023553.01.T01:intron 50.0%
TTCAGGAGCAGCTTGACTTC+AGG + Chr4:86807802-86807821 MsG0480023553.01.T01:intron 50.0%
! GAAGCACCCACCATTATGGA+TGG - Chr4:86808404-86808423 None:intergenic 50.0%
! GGTGCTGGGTTGGAGAAAAT+TGG + Chr4:86808808-86808827 MsG0480023553.01.T01:intron 50.0%
! TATACCATTGGTGCCCCACT+CGG + Chr4:86809634-86809653 MsG0480023553.01.T01:intron 50.0%
! TCTGATGATGCAGCTTCTGC+AGG + Chr4:86807694-86807713 MsG0480023553.01.T01:CDS 50.0%
ATGGGGGATTCACAGGGCAT+TGG - Chr4:86809463-86809482 None:intergenic 55.0%
CTTGTCATGTCCTTGGGCGA+AGG - Chr4:86809239-86809258 None:intergenic 55.0%
GCCCTGTGAATCCCCCATAA+TGG + Chr4:86809465-86809484 MsG0480023553.01.T01:intron 55.0%
GCTATGGAGAAGGGTGGCTA+TGG + Chr4:86808665-86808684 MsG0480023553.01.T01:intron 55.0%
GGAGTAGGTGGCTATGGAGA+AGG + Chr4:86808655-86808674 MsG0480023553.01.T01:intron 55.0%
TAGGTGGCTATGGAGAAGGG+TGG + Chr4:86808659-86808678 MsG0480023553.01.T01:intron 55.0%
! ATACCATTGGTGCCCCACTC+GGG + Chr4:86809635-86809654 MsG0480023553.01.T01:intron 55.0%
! TGGTGCCCTCTCCATTTTGC+AGG + Chr4:86810111-86810130 MsG0480023553.01.T01:CDS 55.0%
CAAGACAAGGCCTTCGCCCA+AGG + Chr4:86809226-86809245 MsG0480023553.01.T01:CDS 60.0%
CCATAGCCACCTACTCCCTC+CGG - Chr4:86808652-86808671 None:intergenic 60.0%
TAAGGACCGGAGGGAGTAGG+TGG + Chr4:86808643-86808662 MsG0480023553.01.T01:intron 60.0%
TACTGTGCCGCAGCAGATGC+TGG + Chr4:86808217-86808236 MsG0480023553.01.T01:intron 60.0%
TTCTGCTCGGGGAGATCCCT+TGG + Chr4:86809505-86809524 MsG0480023553.01.T01:intron 60.0%
CCGGAGGGAGTAGGTGGCTA+TGG + Chr4:86808649-86808668 MsG0480023553.01.T01:intron 65.0%
!! AGCGAAGGGAGCACCCGAGT+GGG - Chr4:86809651-86809670 None:intergenic 65.0%
!! TAGCGAAGGGAGCACCCGAG+TGG - Chr4:86809652-86809671 None:intergenic 65.0%
! GCACCCGAGTGGGGCACCAA+TGG - Chr4:86809641-86809660 None:intergenic 70.0%
!! GCGAAGGGAGCACCCGAGTG+GGG - Chr4:86809650-86809669 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 86807673 86810348 86807673 ID=MsG0480023553.01;Name=MsG0480023553.01
Chr4 mRNA 86807673 86810348 86807673 ID=MsG0480023553.01.T01;Parent=MsG0480023553.01;Name=MsG0480023553.01.T01;_AED=0.49;_eAED=0.59;_QI=0|0.75|0.4|1|1|0.8|5|0|213
Chr4 exon 86807673 86807789 86807673 ID=MsG0480023553.01.T01:exon:6065;Parent=MsG0480023553.01.T01
Chr4 exon 86809073 86809331 86809073 ID=MsG0480023553.01.T01:exon:6066;Parent=MsG0480023553.01.T01
Chr4 exon 86809908 86809944 86809908 ID=MsG0480023553.01.T01:exon:6067;Parent=MsG0480023553.01.T01
Chr4 exon 86810027 86810132 86810027 ID=MsG0480023553.01.T01:exon:6068;Parent=MsG0480023553.01.T01
Chr4 exon 86810226 86810348 86810226 ID=MsG0480023553.01.T01:exon:6069;Parent=MsG0480023553.01.T01
Chr4 CDS 86807673 86807789 86807673 ID=MsG0480023553.01.T01:cds;Parent=MsG0480023553.01.T01
Chr4 CDS 86809073 86809331 86809073 ID=MsG0480023553.01.T01:cds;Parent=MsG0480023553.01.T01
Chr4 CDS 86809908 86809944 86809908 ID=MsG0480023553.01.T01:cds;Parent=MsG0480023553.01.T01
Chr4 CDS 86810027 86810132 86810027 ID=MsG0480023553.01.T01:cds;Parent=MsG0480023553.01.T01
Chr4 CDS 86810226 86810348 86810226 ID=MsG0480023553.01.T01:cds;Parent=MsG0480023553.01.T01
Gene Sequence

>MsG0480023553.01.T01

ATGACTTCTGATGAGGCAGCTTCTGATGATGCAGCTTCTGCAGGTGCAGCTTCTGATGATGCAGCTTCTGATAATGTGGCTTCTGGACCTCTTGTCTTCAGGAGCACTATTCTTCAGGAAGAAGATGATTTGATGATCAGAAGATTTCTACGTGCTCGTGATTTAGATGTAGAGAAGGCTTCAGCAATGTTCCTCAAGTACTTGAAATGGAGACATTCATTTGTTCCAAATGGTTCCATATCTCTATCACAGGTTCCTAATCAAATTGCACAAGACAAGGCCTTCGCCCAAGGACATGACAAGATTGGTCGACCAATACTTCTTGTCTTTGGTGGAAGACATTTTCAAAAGAAGGATGGTCTAGATGAATTCAAACGGTTTGCAGTTTATATTCTTGATAAACTATGTGCAAGCATGCCACCTGGGGAAGAAAAATTTGTTGGTATAGCAGAACTCAAAGGATGGGGTTACTCAAATAGCGATTTGCGTGGATACATTGGTGCCCTCTCCATTTTGCAGGATTACTACCCTGAAAGATTGGGGAAGTTGTTTATTCTCCACGCACCGTACATTTTTATGAAAGTGTGGAAAATAGTTTACCCGTTCATTGACAACAAAACTAAGAAGAAGGTGATGTTTTAA

Protein sequence

>MsG0480023553.01.T01

MTSDEAASDDAASAGAASDDAASDNVASGPLVFRSTILQEEDDLMIRRFLRARDLDVEKASAMFLKYLKWRHSFVPNGSISLSQVPNQIAQDKAFAQGHDKIGRPILLVFGGRHFQKKDGLDEFKRFAVYILDKLCASMPPGEEKFVGIAELKGWGYSNSDLRGYIGALSILQDYYPERLGKLFILHAPYIFMKVWKIVYPFIDNKTKKKVMF*