AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033049.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033049.01.T01 MTR_6g047640 77.344 512 71 8 1 497 1 482 0.0 717
MsG0680033049.01.T01 MTR_6g047640 73.828 512 70 9 1 497 1 463 0.0 691
MsG0680033049.01.T01 MTR_6g047610 66.602 512 125 9 1 497 1 481 0.0 636
MsG0680033049.01.T01 MTR_6g047590 65.594 497 147 7 1 493 1 477 0.0 611
MsG0680033049.01.T01 MTR_1g100180 50.270 370 184 0 14 383 26 395 4.17e-129 385
MsG0680033049.01.T01 MTR_1g021740 41.131 389 226 2 1 386 3 391 3.35e-97 303
MsG0680033049.01.T01 MTR_8g069470 39.733 375 224 2 10 382 28 402 8.42e-93 292
MsG0680033049.01.T01 MTR_5g032720 40.934 364 214 1 23 385 28 391 4.47e-90 284
MsG0680033049.01.T01 MTR_5g033100 43.182 352 199 1 32 382 57 408 2.28e-88 281
MsG0680033049.01.T01 MTR_3g099700 44.134 358 199 1 29 385 44 401 2.74e-87 277
MsG0680033049.01.T01 MTR_7g087410 39.554 359 216 1 29 386 29 387 3.72e-85 271
MsG0680033049.01.T01 MTR_6g027200 37.766 376 232 2 12 386 18 392 5.37e-81 261
MsG0680033049.01.T01 MTR_7g087400 37.673 361 225 0 20 380 19 379 4.12e-79 256
MsG0680033049.01.T01 MTR_5g032750 38.547 358 219 1 29 385 34 391 6.25e-77 250
MsG0680033049.01.T01 MTR_7g087410 41.946 298 172 1 90 386 1 298 4.24e-76 245
MsG0680033049.01.T01 MTR_6g027190 37.666 377 231 2 14 386 4 380 6.97e-76 247
MsG0680033049.01.T01 MTR_3g099720 37.360 356 222 1 32 386 42 397 3.61e-74 243
MsG0680033049.01.T01 MTR_4g048000 36.456 395 235 3 4 382 23 417 3.42e-73 241
MsG0680033049.01.T01 MTR_2g022980 36.193 373 234 2 13 383 32 402 9.96e-73 239
MsG0680033049.01.T01 MTR_2g088400 37.360 356 221 1 30 383 51 406 2.77e-70 232
MsG0680033049.01.T01 MTR_2g088400 37.360 356 221 1 30 383 51 406 4.18e-70 233
MsG0680033049.01.T01 MTR_7g087430 39.597 298 179 1 90 386 1 298 4.86e-69 227
MsG0680033049.01.T01 MTR_5g090290 36.364 330 208 1 59 386 74 403 1.86e-62 214
MsG0680033049.01.T01 MTR_7g087370 33.245 376 216 2 11 386 16 356 1.86e-60 206
MsG0680033049.01.T01 MTR_8g063590 35.952 331 209 2 59 386 81 411 2.81e-60 207
MsG0680033049.01.T01 MTR_6g081410 32.308 390 252 3 1 386 3 384 6.19e-53 186
MsG0680033049.01.T01 MTR_6g066380 34.821 336 209 3 59 390 55 384 1.03e-52 186
MsG0680033049.01.T01 MTR_5g087930 34.122 296 186 3 59 352 54 342 3.03e-49 176
MsG0680033049.01.T01 MTR_6g081780 34.627 335 207 4 59 385 53 383 8.84e-49 175
MsG0680033049.01.T01 MTR_1g108810 30.077 389 265 3 1 383 1 388 7.72e-48 172
MsG0680033049.01.T01 MTR_8g106670 29.146 398 263 5 22 417 11 391 1.15e-47 172
MsG0680033049.01.T01 MTR_7g082810 29.353 402 261 6 24 417 13 399 7.78e-47 170
MsG0680033049.01.T01 MTR_6g081240 33.246 382 243 5 31 409 10 382 2.51e-46 167
MsG0680033049.01.T01 MTR_2g078930 31.980 394 255 6 2 386 11 400 3.38e-46 168
MsG0680033049.01.T01 MTR_6g081300 32.824 393 245 5 31 417 10 389 3.38e-46 168
MsG0680033049.01.T01 MTR_2g079020 30.380 395 260 4 6 386 1 394 6.67e-46 167
MsG0680033049.01.T01 MTR_1g108840 32.653 392 249 6 1 385 8 391 1.97e-45 166
MsG0680033049.01.T01 MTR_6g081390 31.638 354 227 5 23 371 12 355 3.06e-44 162
MsG0680033049.01.T01 MTR_6g081400 30.682 352 233 3 23 371 15 358 1.11e-42 158
MsG0680033049.01.T01 MTR_6g081810 29.592 392 236 7 1 390 3 356 4.48e-42 156
MsG0680033049.01.T01 MTR_1g108990 29.176 425 281 6 28 447 22 431 8.85e-40 150
MsG0680033049.01.T01 MTR_2g078960 32.787 366 236 4 30 386 26 390 1.67e-39 149
MsG0680033049.01.T01 MTR_2g078970 30.857 350 238 2 40 386 40 388 2.50e-39 149
MsG0680033049.01.T01 MTR_5g090280 31.288 326 195 3 90 386 1 326 5.36e-38 144
MsG0680033049.01.T01 MTR_6g081310 31.148 366 228 6 59 409 24 380 7.80e-37 142
MsG0680033049.01.T01 MTR_1g109060 27.928 444 296 7 13 447 2 430 1.25e-36 141
MsG0680033049.01.T01 MTR_1g109060 27.928 444 296 7 13 447 2 430 1.94e-36 141
MsG0680033049.01.T01 MTR_6g004220 26.613 372 260 6 20 383 19 385 8.24e-36 139
MsG0680033049.01.T01 MTR_6g004220 26.613 372 260 6 20 383 19 385 1.78e-35 139
MsG0680033049.01.T01 MTR_6g004220 26.702 382 265 7 12 383 2 378 3.90e-35 137
MsG0680033049.01.T01 MTR_5g010830 29.730 370 238 6 1 365 41 393 9.81e-35 137
MsG0680033049.01.T01 MTR_1g101500 27.344 384 275 2 4 385 39 420 1.03e-33 134
MsG0680033049.01.T01 MTR_6g043810 25.779 353 249 4 31 372 23 373 8.39e-32 128
MsG0680033049.01.T01 MTR_6g043810 25.779 353 249 4 31 372 33 383 8.94e-32 128
MsG0680033049.01.T01 MTR_0039s0080 27.941 340 241 3 38 374 45 383 9.74e-32 128
MsG0680033049.01.T01 MTR_7g082800 31.000 300 197 5 90 383 1 296 7.44e-31 124
MsG0680033049.01.T01 MTR_3g111020 26.113 337 245 2 38 371 58 393 9.48e-29 120
MsG0680033049.01.T01 MTR_6g004220 27.451 306 217 3 20 321 19 323 8.58e-28 114
MsG0680033049.01.T01 MTR_5g067460 24.277 346 260 1 31 374 55 400 1.66e-27 116
MsG0680033049.01.T01 MTR_6g088805 25.414 362 261 4 14 371 10 366 7.65e-27 114
MsG0680033049.01.T01 MTR_8g102430 25.075 335 239 3 1 333 1 325 3.17e-21 96.7
MsG0680033049.01.T01 MTR_5g011540 26.108 406 278 5 26 423 38 429 3.73e-20 94.0
MsG0680033049.01.T01 MTR_2g078990 28.899 218 151 2 172 386 1 217 3.43e-19 89.0
MsG0680033049.01.T01 MTR_4g027920 22.454 383 287 4 5 382 134 511 1.20e-18 89.7
MsG0680033049.01.T01 MTR_2g435930 20.556 360 266 3 31 371 19 377 4.74e-14 74.7
MsG0680033049.01.T01 MTR_4g131290 45.763 59 32 0 103 161 13 71 2.16e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033049.01.T01 AT4G25640 52.493 381 181 0 3 383 5 385 2.21e-135 400
MsG0680033049.01.T01 AT4G25640 52.493 381 181 0 3 383 5 385 3.24e-135 399
MsG0680033049.01.T01 AT4G25640 52.493 381 181 0 3 383 5 385 4.96e-135 401
MsG0680033049.01.T01 AT4G00350 50.000 378 189 0 6 383 62 439 9.96e-135 401
MsG0680033049.01.T01 AT1G47530 41.176 357 209 1 31 386 34 390 7.48e-95 296
MsG0680033049.01.T01 AT1G12950 40.107 374 222 2 9 380 43 416 1.25e-92 292
MsG0680033049.01.T01 AT3G26590 41.333 375 219 1 10 383 23 397 2.73e-92 290
MsG0680033049.01.T01 AT5G38030 39.687 383 228 2 2 383 17 397 2.97e-92 290
MsG0680033049.01.T01 AT1G23300 41.019 373 219 1 12 383 24 396 2.74e-91 288
MsG0680033049.01.T01 AT1G47530 43.960 298 166 1 90 386 1 298 3.92e-82 261
MsG0680033049.01.T01 AT5G65380 39.378 386 227 3 2 386 13 392 2.05e-81 261
MsG0680033049.01.T01 AT5G44050 39.665 358 215 1 24 380 32 389 1.29e-78 254
MsG0680033049.01.T01 AT3G26590 44.068 295 164 1 90 383 1 295 2.98e-78 251
MsG0680033049.01.T01 AT1G33110 38.601 386 233 3 1 385 8 390 1.75e-77 249
MsG0680033049.01.T01 AT1G33110 38.601 386 233 3 1 385 8 390 1.91e-76 249
MsG0680033049.01.T01 AT1G33080 39.118 363 220 1 25 386 29 391 2.86e-76 248
MsG0680033049.01.T01 AT1G33080 39.011 364 221 1 24 386 28 391 7.85e-76 247
MsG0680033049.01.T01 AT1G33100 36.693 387 238 2 1 386 8 388 1.15e-75 247
MsG0680033049.01.T01 AT1G61890 36.390 349 220 1 37 383 52 400 8.26e-73 239
MsG0680033049.01.T01 AT1G61890 36.390 349 220 1 37 383 52 400 1.34e-72 239
MsG0680033049.01.T01 AT1G61890 36.390 349 220 1 37 383 52 400 3.51e-72 238
MsG0680033049.01.T01 AT1G33090 36.410 390 238 3 1 386 8 391 4.01e-72 238
MsG0680033049.01.T01 AT5G10420 38.398 362 222 1 25 385 31 392 3.46e-71 235
MsG0680033049.01.T01 AT1G11670 34.860 393 245 3 1 383 12 403 4.78e-71 235
MsG0680033049.01.T01 AT3G21690 36.441 354 223 1 32 383 52 405 6.64e-70 232
MsG0680033049.01.T01 AT4G21910 37.822 349 214 2 37 383 62 409 4.39e-68 227
MsG0680033049.01.T01 AT4G21910 37.822 349 214 2 37 383 62 409 4.39e-68 227
MsG0680033049.01.T01 AT4G21910 37.536 349 215 2 37 383 60 407 6.52e-68 227
MsG0680033049.01.T01 AT4G21910 37.536 349 215 2 37 383 60 407 6.52e-68 227
MsG0680033049.01.T01 AT4G21903 38.462 338 205 2 48 383 69 405 4.98e-66 222
MsG0680033049.01.T01 AT4G21903 38.462 338 205 2 48 383 69 405 9.09e-66 221
MsG0680033049.01.T01 AT3G59030 34.251 327 213 1 59 383 78 404 2.99e-63 212
MsG0680033049.01.T01 AT3G03620 34.349 361 232 3 29 386 34 392 5.71e-63 214
MsG0680033049.01.T01 AT3G03620 34.349 361 232 3 29 386 34 392 5.71e-63 214
MsG0680033049.01.T01 AT3G59030 34.251 327 213 1 59 383 78 404 2.46e-62 212
MsG0680033049.01.T01 AT5G17700 33.846 390 246 3 1 386 8 389 4.28e-61 206
MsG0680033049.01.T01 AT5G17700 33.846 390 246 3 1 386 8 389 3.47e-60 206
MsG0680033049.01.T01 AT5G17700 33.846 390 246 3 1 386 8 389 3.47e-60 206
MsG0680033049.01.T01 AT4G21903 39.189 296 178 1 90 383 1 296 1.24e-58 199
MsG0680033049.01.T01 AT1G73700 32.267 375 240 3 4 376 8 370 3.38e-51 181
MsG0680033049.01.T01 AT2G04040 31.638 354 240 1 32 383 27 380 2.96e-49 176
MsG0680033049.01.T01 AT2G04070 31.356 354 241 1 32 383 27 380 1.28e-48 174
MsG0680033049.01.T01 AT2G04080 30.791 354 243 1 32 383 27 380 9.64e-48 172
MsG0680033049.01.T01 AT2G04080 30.791 354 243 1 32 383 27 380 9.73e-48 172
MsG0680033049.01.T01 AT1G71140 30.077 389 250 4 11 386 3 382 9.12e-46 167
MsG0680033049.01.T01 AT5G52450 34.030 335 207 3 23 351 25 351 4.20e-45 165
MsG0680033049.01.T01 AT2G04050 31.429 385 257 3 1 383 1 380 6.32e-45 164
MsG0680033049.01.T01 AT2G04090 30.155 388 261 3 1 383 1 383 6.44e-43 159
MsG0680033049.01.T01 AT1G15150 29.268 369 251 4 20 383 21 384 1.69e-41 155
MsG0680033049.01.T01 AT2G04100 28.941 387 267 3 1 383 1 383 2.35e-41 155
MsG0680033049.01.T01 AT2G04100 28.941 387 267 3 1 383 1 383 3.28e-41 154
MsG0680033049.01.T01 AT3G23560 29.971 347 236 3 25 366 31 375 1.19e-40 151
MsG0680033049.01.T01 AT1G15170 29.948 384 255 4 11 383 7 387 3.85e-40 151
MsG0680033049.01.T01 AT1G66760 27.665 394 261 5 1 385 5 383 4.06e-40 149
MsG0680033049.01.T01 AT1G15160 28.997 369 252 4 20 383 21 384 4.27e-40 151
MsG0680033049.01.T01 AT3G23560 29.971 347 236 3 25 366 31 375 5.54e-40 151
MsG0680033049.01.T01 AT1G66760 27.665 394 261 5 1 385 5 383 1.25e-39 150
MsG0680033049.01.T01 AT2G34360 31.063 367 241 7 18 379 12 371 1.71e-39 150
MsG0680033049.01.T01 AT1G66760 27.665 394 261 5 1 385 5 383 2.83e-39 149
MsG0680033049.01.T01 AT3G23550 29.363 361 248 3 25 380 23 381 3.38e-39 149
MsG0680033049.01.T01 AT1G15180 28.906 384 265 2 8 383 5 388 4.71e-39 148
MsG0680033049.01.T01 AT1G66780 26.098 387 273 5 5 383 7 388 4.03e-37 143
MsG0680033049.01.T01 AT1G64820 25.606 371 264 6 20 383 17 382 7.68e-33 131
MsG0680033049.01.T01 AT1G15170 32.258 248 166 1 138 383 21 268 3.65e-30 121
MsG0680033049.01.T01 AT1G15150 29.839 248 172 1 138 383 21 268 1.71e-28 117
MsG0680033049.01.T01 AT2G34360 26.776 366 216 4 18 379 12 329 4.43e-28 117
MsG0680033049.01.T01 AT1G15180 29.885 261 181 1 125 383 8 268 1.01e-27 115
MsG0680033049.01.T01 AT5G19700 25.575 348 251 3 29 371 33 377 1.38e-27 116
MsG0680033049.01.T01 AT4G29140 25.291 344 253 2 31 371 55 397 1.39e-27 116
MsG0680033049.01.T01 AT2G38510 24.189 339 248 4 38 370 12 347 4.10e-26 111
MsG0680033049.01.T01 AT1G71870 22.980 396 262 8 1 369 1 380 5.08e-24 105
MsG0680033049.01.T01 AT1G58340 23.823 361 259 4 19 374 53 402 8.72e-24 105
MsG0680033049.01.T01 AT5G52050 22.992 361 270 1 19 371 22 382 8.37e-23 102
MsG0680033049.01.T01 AT1G66760 28.000 250 178 1 138 385 6 255 1.40e-21 96.3
MsG0680033049.01.T01 AT4G22790 26.629 353 226 8 38 370 32 371 1.88e-19 91.7
MsG0680033049.01.T01 AT5G49130 24.299 321 219 6 31 331 25 341 2.79e-17 85.1
MsG0680033049.01.T01 AT4G23030 26.875 320 229 3 59 374 59 377 3.41e-16 81.6

Find 111 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATCTATTTCTCTATTT+TGG 0.115781 6:-55507394 MsG0680033049.01.T01:intron
GATTGTCTTGGATGGCATTT+AGG 0.156838 6:-55506126 MsG0680033049.01.T01:CDS
CTTGGTTTCAACCAGCATTT+AGG 0.184697 6:-55504586 MsG0680033049.01.T01:CDS
GGATGGCATTTAGGGAATTA+TGG 0.195593 6:-55506117 MsG0680033049.01.T01:CDS
TATGGTTGGGTACATAAATT+TGG 0.198732 6:-55504647 MsG0680033049.01.T01:CDS
TGTCCGTTCTTCAACTTAAA+TGG 0.219075 6:-55499746 MsG0680033049.01.T01:three_prime_UTR
TGCCACCAAGAAAGAGTATT+TGG 0.220778 6:+55505013 None:intergenic
TTGCAGAAGGTGTTTGAAAA+AGG 0.223368 6:+55499785 None:intergenic
TCGTTACTCTGGTAAAATAA+AGG 0.240622 6:+55504746 None:intergenic
ACTCTAATCTTAAAACTTCT+TGG 0.251742 6:-55506448 MsG0680033049.01.T01:CDS
CGGCTAATCGCATGAGAATT+TGG 0.262057 6:-55499941 MsG0680033049.01.T01:CDS
CGTTACTCTGGTAAAATAAA+GGG 0.262145 6:+55504747 None:intergenic
ATTTATATAGGTGTGGTAAT+TGG 0.266990 6:-55504685 MsG0680033049.01.T01:CDS
ATAAGAAAGCGGAGTCTTAT+TGG 0.271788 6:-55507687 MsG0680033049.01.T01:five_prime_UTR
TACATTGTTGGACTCCATAT+TGG 0.278155 6:-55504616 MsG0680033049.01.T01:CDS
ATCAAACATAATTACCTCTT+TGG 0.279611 6:+55500557 None:intergenic
CACTGGTTCTTCATTTCAAA+TGG 0.284449 6:-55499698 MsG0680033049.01.T01:three_prime_UTR
GCTTGCATTATCCTTCTTGC+TGG 0.308510 6:-55506034 MsG0680033049.01.T01:CDS
TCCATCTATGCTGGTCATAT+TGG 0.310648 6:-55507462 MsG0680033049.01.T01:CDS
AGCATCCAAATACTCTTTCT+TGG 0.312229 6:-55505018 MsG0680033049.01.T01:CDS
TGGAACATGATGCTGCTTCT+TGG 0.318875 6:-55505645 MsG0680033049.01.T01:CDS
CTTCATCAGTGTATTTGATT+GGG 0.322121 6:-55506248 MsG0680033049.01.T01:CDS
GATGGCATTTAGGGAATTAT+GGG 0.335429 6:-55506116 MsG0680033049.01.T01:CDS
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6:-55506249 MsG0680033049.01.T01:CDS
CTTTACCAATAGTGATGATA+TGG 0.342078 6:-55504916 MsG0680033049.01.T01:CDS
TGTTCCAACCCTGAATATTA+AGG 0.345929 6:+55505661 None:intergenic
ACCAATATGACCAGCATAGA+TGG 0.347961 6:+55507461 None:intergenic
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6:-55506125 MsG0680033049.01.T01:CDS
AGAGTTGCATATAGATGAAT+TGG 0.356907 6:+55506466 None:intergenic
AGTGAATTAGCATACCTTCT+TGG 0.357398 6:-55504882 MsG0680033049.01.T01:intron
AACTTCTTGGACATTTATAT+AGG 0.367129 6:-55504697 MsG0680033049.01.T01:CDS
ACACTATGTGGCCAAGCTTA+TGG 0.367252 6:-55506568 MsG0680033049.01.T01:CDS
GAATTTACTAAGCTAAGTTT+TGG 0.370077 6:-55506094 MsG0680033049.01.T01:CDS
TTGGTTTCAACCAGCATTTA+GGG 0.380303 6:-55504585 MsG0680033049.01.T01:CDS
AACCAAGGAAAATTCCAATA+TGG 0.382866 6:+55504602 None:intergenic
AAAGTAGAATCTCACTCATA+TGG 0.385219 6:-55507652 MsG0680033049.01.T01:exon
TTGGCATGCTATTACATTGT+TGG 0.389393 6:-55504628 MsG0680033049.01.T01:CDS
AAAGAGTATTTGGATGCTCT+TGG 0.420399 6:+55505023 None:intergenic
AAAGAGATAGCCGATCTTGC+CGG 0.440212 6:-55506418 MsG0680033049.01.T01:CDS
TCATTATTTACAAGACCAAC+TGG 0.443175 6:-55500581 MsG0680033049.01.T01:CDS
GTATTTGATTGGGGAATGAT+TGG 0.446046 6:-55506238 MsG0680033049.01.T01:CDS
ACTGGTTCTTCATTTCAAAT+GGG 0.448301 6:-55499697 MsG0680033049.01.T01:three_prime_UTR
ATGTACCATATCATCACTAT+TGG 0.457968 6:+55504911 None:intergenic
GATAATCCTGTCATTGCTGT+TGG 0.465528 6:-55506004 MsG0680033049.01.T01:CDS
GCAGGAAAATTTCAAAATGC+TGG 0.468904 6:-55506544 MsG0680033049.01.T01:CDS
GTATTTATCTTCAAAGGTCA+TGG 0.471386 6:-55506522 MsG0680033049.01.T01:CDS
ATCACTATTGGTAAAGATGA+AGG 0.476018 6:+55504923 None:intergenic
CGGAGTCTTATTGGTATATG+TGG 0.477331 6:-55507678 MsG0680033049.01.T01:five_prime_UTR
ATGTCTCAGTCTCTTCTCAT+TGG 0.479393 6:-55504990 MsG0680033049.01.T01:CDS
TTATTCTTACCAAATTGAAA+AGG 0.488312 6:+55505979 None:intergenic
ATGCTGGTATTTATCTTCAA+AGG 0.493117 6:-55506528 MsG0680033049.01.T01:CDS
TTGGCTTAGGGTCTGTGGGG+AGG 0.498398 6:-55500645 MsG0680033049.01.T01:intron
TTGGAATAAGTTCAGCAGTA+AGG 0.499155 6:-55505626 MsG0680033049.01.T01:intron
TGGATGTGGATGGCAAGTTA+TGG 0.499825 6:-55504665 MsG0680033049.01.T01:CDS
CAACCAGCATTTAGGGGTCA+AGG 0.506365 6:-55504578 MsG0680033049.01.T01:intron
TAATGATTTGTTTAGAACAA+TGG 0.510219 6:-55506063 MsG0680033049.01.T01:CDS
TGTGGATGGCAAGTTATGGT+TGG 0.510563 6:-55504661 MsG0680033049.01.T01:CDS
AATTACCTCTTTGGTCCAGT+TGG 0.521889 6:+55500566 None:intergenic
AAGGATGGAATGGATTGTCT+TGG 0.523770 6:-55506138 MsG0680033049.01.T01:CDS
TGTTATTATGTACATAGCAA+TGG 0.525747 6:-55506305 MsG0680033049.01.T01:CDS
TGTGGCCAAGCTTATGGTGC+AGG 0.527728 6:-55506562 MsG0680033049.01.T01:CDS
GCAATGGCAAGTAATATCTC+AGG 0.528753 6:-55506211 MsG0680033049.01.T01:CDS
ATAATTGCAGGTAGAGCAAA+CGG 0.529073 6:-55499961 MsG0680033049.01.T01:intron
CATGTAGGGAATTAGTAGAA+TGG 0.533759 6:+55506387 None:intergenic
TTCATCAGTGTATTTGATTG+GGG 0.536727 6:-55506247 MsG0680033049.01.T01:CDS
TCTTCAAATTCCATCTATGC+TGG 0.537679 6:-55507471 MsG0680033049.01.T01:CDS
CTGGTTCTTCATTTCAAATG+GGG 0.537782 6:-55499696 MsG0680033049.01.T01:three_prime_UTR
TAACCATTGTTATACCAAGA+AGG 0.539016 6:+55504868 None:intergenic
ATCCAAATACTCTTTCTTGG+TGG 0.540364 6:-55505015 MsG0680033049.01.T01:CDS
GTGGATGGCAAGTTATGGTT+GGG 0.548930 6:-55504660 MsG0680033049.01.T01:CDS
ATAGGTGTGGTAATTGGATG+TGG 0.550106 6:-55504679 MsG0680033049.01.T01:CDS
CTTGGACATTTATATAGGTG+TGG 0.554080 6:-55504692 MsG0680033049.01.T01:CDS
GGGAATGATTGGTTTAGCAA+TGG 0.557339 6:-55506227 MsG0680033049.01.T01:CDS
GCCATTGGTTGGTGTAAAGA+AGG 0.560351 6:-55506157 MsG0680033049.01.T01:CDS
GTTCGTGTCTCTAATACCCT+TGG 0.561196 6:-55505056 MsG0680033049.01.T01:CDS
GTTACTCTGGTAAAATAAAG+GGG 0.561228 6:+55504748 None:intergenic
CTCTTGGATGTGACATGCCA+AGG 0.564469 6:+55505039 None:intergenic
CTTCACAAGAGGCAAATTGA+CGG 0.565151 6:+55506354 None:intergenic
TTAGCCTTAATATTCAGGGT+TGG 0.565916 6:-55505665 MsG0680033049.01.T01:intron
AAGGAACCAACAGCAATGAC+AGG 0.568244 6:+55505998 None:intergenic
AAAAGTAGAGACAAAGCCAC+TGG 0.570960 6:+55507510 None:intergenic
TGGTGTAAAGAAGGATGGAA+TGG 0.573821 6:-55506148 MsG0680033049.01.T01:CDS
CTAAATGCTGGTTGAAACCA+AGG 0.575956 6:+55504587 None:intergenic
TTGGTTGGTGTAAAGAAGGA+TGG 0.577321 6:-55506153 MsG0680033049.01.T01:CDS
GCATTGGTAATATATGCCAT+TGG 0.580938 6:-55506172 MsG0680033049.01.T01:CDS
ATACCTTGACCCCTAAATGC+TGG 0.585343 6:+55504575 None:intergenic
GACGGCGAAGGAAAACATGT+AGG 0.589287 6:+55506372 None:intergenic
TGGAATTTGAAGAGCCAATG+AGG 0.590690 6:+55507481 None:intergenic
GCTTGAAGAAACTTCACAAG+AGG 0.595674 6:+55506343 None:intergenic
ACGGCGAAGGAAAACATGTA+GGG 0.600604 6:+55506373 None:intergenic
TATCAAGATGACCAGCAAGA+AGG 0.603608 6:+55506023 None:intergenic
CATATAGATGAATTGGCAAG+AGG 0.604027 6:+55506473 None:intergenic
AAGAGGCAAATTGACGGCGA+AGG 0.608428 6:+55506360 None:intergenic
TGGTAATATATGCCATTGGT+TGG 0.614924 6:-55506168 MsG0680033049.01.T01:CDS
TCCTTCTTTACACCAACCAA+TGG 0.619153 6:+55506156 None:intergenic
CCGCCATTTAAGTTGAAGAA+CGG 0.620084 6:+55499743 None:intergenic
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6:-55506134 MsG0680033049.01.T01:CDS
CTGTGGGGAGGAACAATGTG+CGG 0.627938 6:-55500633 MsG0680033049.01.T01:CDS
AATGCACTAGCAACACTATG+TGG 0.632641 6:-55506580 MsG0680033049.01.T01:CDS
TGGTTTCAACCAGCATTTAG+GGG 0.633107 6:-55504584 MsG0680033049.01.T01:CDS
GTGTGGTAATTGGATGTGGA+TGG 0.640076 6:-55504675 MsG0680033049.01.T01:CDS
CCGTTCTTCAACTTAAATGG+CGG 0.640234 6:-55499743 MsG0680033049.01.T01:three_prime_UTR
TGTGTTCAGAAACTTGCAGA+AGG 0.640513 6:+55499772 None:intergenic
AACTTAGTACTATAAGAAAG+CGG 0.642198 6:-55507698 MsG0680033049.01.T01:five_prime_UTR
GGAATGAGACATTGAAGACA+TGG 0.645340 6:-55507545 MsG0680033049.01.T01:CDS
CAAGACCAACTGGACCAAAG+AGG 0.651863 6:-55500571 MsG0680033049.01.T01:CDS
TGGCAAGAGGAATATACAAG+TGG 0.656634 6:+55506486 None:intergenic
TGGCAAGTAATATCTCAGGA+TGG 0.670260 6:-55506207 MsG0680033049.01.T01:CDS
TCTTGGATGTGACATGCCAA+GGG 0.694020 6:+55505040 None:intergenic
GCCAAGTTAAAAGAAGAACA+AGG 0.704870 6:+55499817 None:intergenic
ATGGAAGATAGCAATTCCAG+TGG 0.711281 6:-55507526 MsG0680033049.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAATAAATATAAA+TGG - Chr6:55504311-55504330 MsG0680033049.01.T01:intron 0.0%
!! AACAAAAAAAAAACAAAAAT+GGG - Chr6:55506413-55506432 MsG0680033049.01.T01:CDS 10.0%
!! ATAAAAAAAAAAGCTTAATT+TGG + Chr6:55500051-55500070 None:intergenic 10.0%
!! TAAATTGATTAAAATGATAA+CGG - Chr6:55505466-55505485 MsG0680033049.01.T01:intron 10.0%
!! TAGAAAATTGATATATTTAT+AGG + Chr6:55506954-55506973 None:intergenic 10.0%
!!! AAGAAAATTAATTTTTTCTA+AGG + Chr6:55505647-55505666 None:intergenic 10.0%
!!! AATTACCTTTTTTTTTTTTT+GGG - Chr6:55503384-55503403 MsG0680033049.01.T01:intron 10.0%
!!! ATTTGAAATTTAATTTTTAG+AGG - Chr6:55506104-55506123 MsG0680033049.01.T01:CDS 10.0%
!!! TAATTACCTTTTTTTTTTTT+TGG - Chr6:55503383-55503402 MsG0680033049.01.T01:intron 10.0%
!!! TCATTTTCTAAAATTATTAT+CGG - Chr6:55501543-55501562 MsG0680033049.01.T01:intron 10.0%
!!! TTCTTTTTAATTTTCTTTTT+TGG + Chr6:55502228-55502247 None:intergenic 10.0%
!! AAAAACACATAAATTATTGA+TGG + Chr6:55503959-55503978 None:intergenic 15.0%
!! AAAACACATAAATTATTGAT+GGG + Chr6:55503958-55503977 None:intergenic 15.0%
!! AATCAATTTATTCATTATTC+TGG + Chr6:55505456-55505475 None:intergenic 15.0%
!! AATTCAATAATTAGTAATTG+TGG - Chr6:55500112-55500131 MsG0680033049.01.T01:intron 15.0%
!! CAATTACTAATTATTGAATT+TGG + Chr6:55500112-55500131 None:intergenic 15.0%
!! GAACAAAAAAAAAACAAAAA+TGG - Chr6:55506412-55506431 MsG0680033049.01.T01:CDS 15.0%
!! TAATAATAAATTAGTTCAAG+TGG - Chr6:55504376-55504395 MsG0680033049.01.T01:intron 15.0%
!! TTATAGGATTATTCTTTATT+AGG + Chr6:55505114-55505133 None:intergenic 15.0%
!!! ATAAGAACCTTATTTTTTTT+GGG + Chr6:55506609-55506628 None:intergenic 15.0%
!!! ATTATAGCTTTTAGTTTATA+AGG - Chr6:55500404-55500423 MsG0680033049.01.T01:intron 15.0%
!!! ATTTTTTTTGAACAAATTGT+GGG + Chr6:55506180-55506199 None:intergenic 15.0%
!!! TATTTGAATTTTCTAATAAC+AGG + Chr6:55505705-55505724 None:intergenic 15.0%
!!! TATTTTTTTTGAACAAATTG+TGG + Chr6:55506181-55506200 None:intergenic 15.0%
!!! TTACAAATTTACATCTTTTT+TGG - Chr6:55506726-55506745 MsG0680033049.01.T01:intron 15.0%
!!! TTATTAGTATTGATAATTGA+GGG + Chr6:55505802-55505821 None:intergenic 15.0%
!!! TTGTAATAACCTTTATATTT+TGG - Chr6:55507034-55507053 MsG0680033049.01.T01:intron 15.0%
!!! TTTATTTTTATTTTTGCCTT+GGG + Chr6:55507168-55507187 None:intergenic 15.0%
!!! TTTTATTTTTATTTTTGCCT+TGG + Chr6:55507169-55507188 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG - Chr6:55507291-55507310 MsG0680033049.01.T01:intron 15.0%
!! AAACACATAAATTATTGATG+GGG + Chr6:55503957-55503976 None:intergenic 20.0%
!! AACTTATCTACTATTAATGT+GGG - Chr6:55503192-55503211 MsG0680033049.01.T01:intron 20.0%
!! AAGGAAATCATAATATAAGT+TGG + Chr6:55506703-55506722 None:intergenic 20.0%
!! AATATAAAGGTTATTACAAG+TGG + Chr6:55507033-55507052 None:intergenic 20.0%
!! AATTAGAACATAACATTCTT+AGG + Chr6:55506508-55506527 None:intergenic 20.0%
!! AATTCAATGTAATTATGTGT+CGG + Chr6:55501520-55501539 None:intergenic 20.0%
!! ACATAATTTAGTGTAATCAT+AGG - Chr6:55501970-55501989 MsG0680033049.01.T01:intron 20.0%
!! AGATGTAAATTTGTAAGAAA+AGG + Chr6:55506722-55506741 None:intergenic 20.0%
!! AGTCAAAGAAAAAATTTAGA+AGG + Chr6:55506984-55507003 None:intergenic 20.0%
!! ATAAACTCACAATAAAAAGA+TGG + Chr6:55500460-55500479 None:intergenic 20.0%
!! CGTTCATCATATAATAATAA+CGG + Chr6:55500621-55500640 None:intergenic 20.0%
!! GTTCATCATATAATAATAAC+GGG + Chr6:55500620-55500639 None:intergenic 20.0%
!! TAAAAATAAAAAATCACACG+TGG - Chr6:55507178-55507197 MsG0680033049.01.T01:intron 20.0%
!! TAACGTTTGAAAATTATGAA+CGG + Chr6:55505948-55505967 None:intergenic 20.0%
!! TTAAGAATATTCTCACATAA+CGG - Chr6:55504588-55504607 MsG0680033049.01.T01:CDS 20.0%
!! TTATTCTTACCAAATTGAAA+AGG + Chr6:55501414-55501433 None:intergenic 20.0%
!! TTGCAAGTTTAATTACAAAA+GGG + Chr6:55506256-55506275 None:intergenic 20.0%
!!! AAAAAAATTTCTCGTTTTGA+AGG + Chr6:55507486-55507505 None:intergenic 20.0%
!!! AATATTTTACTGAGGTTTAT+AGG + Chr6:55504032-55504051 None:intergenic 20.0%
!!! AATTGTTTTTAGTTTTTCAC+TGG - Chr6:55507675-55507694 MsG0680033049.01.T01:five_prime_UTR 20.0%
!!! ATATCAATTTTTTCGATGAT+AGG + Chr6:55507518-55507537 None:intergenic 20.0%
!!! ATTTTTAGCCTTAATATTCA+GGG - Chr6:55501721-55501740 MsG0680033049.01.T01:intron 20.0%
!!! CATAAGAACCTTATTTTTTT+TGG + Chr6:55506610-55506629 None:intergenic 20.0%
!!! CTACTATTTGTTAAATTAAC+AGG + Chr6:55506038-55506057 None:intergenic 20.0%
!!! CTTCTCAATCTTTTTTTTAT+AGG + Chr6:55505130-55505149 None:intergenic 20.0%
!!! GGTTATAATTTATTTGCTTT+TGG - Chr6:55502571-55502590 MsG0680033049.01.T01:intron 20.0%
!!! GTAACATTAATTTTGAACTA+GGG + Chr6:55507547-55507566 None:intergenic 20.0%
!!! GTTATTAGTATTGATAATTG+AGG + Chr6:55505803-55505822 None:intergenic 20.0%
!!! GTTCATTTTTGCAATTATTA+TGG + Chr6:55505416-55505435 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTCTTA+GGG + Chr6:55507109-55507128 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG - Chr6:55507290-55507309 MsG0680033049.01.T01:intron 20.0%
!!! TAACATTAATTTTGAACTAG+GGG + Chr6:55507546-55507565 None:intergenic 20.0%
!!! TAAGTTCATGTTTGAAATAA+TGG - Chr6:55500147-55500166 MsG0680033049.01.T01:intron 20.0%
!!! TAATATATAAGCTAGTTTCT+TGG + Chr6:55500388-55500407 None:intergenic 20.0%
!!! TAATGATTTGTTTAGAACAA+TGG - Chr6:55501327-55501346 MsG0680033049.01.T01:intron 20.0%
!!! TACACATTTTATTCTTGTAT+TGG + Chr6:55504349-55504368 None:intergenic 20.0%
!!! TACTATCTATTTCTCTATTT+TGG - Chr6:55499996-55500015 MsG0680033049.01.T01:intron 20.0%
!!! TATCAATTTTTTCGATGATA+GGG + Chr6:55507517-55507536 None:intergenic 20.0%
!!! TATTTTTAGCCTTAATATTC+AGG - Chr6:55501720-55501739 MsG0680033049.01.T01:intron 20.0%
!!! TGGTGATTTGAAATTTTATA+AGG + Chr6:55507013-55507032 None:intergenic 20.0%
!!! TGTAACATTAATTTTGAACT+AGG + Chr6:55507548-55507567 None:intergenic 20.0%
!!! TTATTTTTATTTTTGCCTTG+GGG + Chr6:55507167-55507186 None:intergenic 20.0%
!!! TTCTCGTTTTAAAAAAACAA+CGG - Chr6:55506910-55506929 MsG0680033049.01.T01:intron 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + Chr6:55507108-55507127 None:intergenic 20.0%
!!! TTTTTCTTGAAATTGATTGA+GGG - Chr6:55503974-55503993 MsG0680033049.01.T01:intron 20.0%
! AAATCTCTTTCAGCTTAAAT+AGG - Chr6:55503301-55503320 MsG0680033049.01.T01:intron 25.0%
! AACTTAGTACTATAAGAAAG+CGG - Chr6:55499692-55499711 MsG0680033049.01.T01:three_prime_UTR 25.0%
! AACTTCTTGGACATTTATAT+AGG - Chr6:55502693-55502712 MsG0680033049.01.T01:intron 25.0%
! AAGTAAAATTTCATTCGTTG+TGG + Chr6:55505308-55505327 None:intergenic 25.0%
! ACTCTAATCTTAAAACTTCT+TGG - Chr6:55500942-55500961 MsG0680033049.01.T01:intron 25.0%
! ACTCTTACTACATGTTTAAA+GGG + Chr6:55504416-55504435 None:intergenic 25.0%
! AGTATTTCACAAACTATATC+AGG - Chr6:55502550-55502569 MsG0680033049.01.T01:intron 25.0%
! ATCAAAAGCAATTTAAGCTT+TGG - Chr6:55500353-55500372 MsG0680033049.01.T01:intron 25.0%
! ATCAAACATAATTACCTCTT+TGG + Chr6:55506836-55506855 None:intergenic 25.0%
! ATGAGTTCAAAATCACAATT+TGG + Chr6:55503117-55503136 None:intergenic 25.0%
! ATTAGAAGTTCATAGAAGAT+TGG - Chr6:55505178-55505197 MsG0680033049.01.T01:intron 25.0%
! ATTTATATAGGTGTGGTAAT+TGG - Chr6:55502705-55502724 MsG0680033049.01.T01:intron 25.0%
! GAACTTATCTACTATTAATG+TGG - Chr6:55503191-55503210 MsG0680033049.01.T01:intron 25.0%
! GACACTCTTTACATTATAAA+CGG + Chr6:55502951-55502970 None:intergenic 25.0%
! GCAATTAAGCCAAAATATAA+AGG + Chr6:55507046-55507065 None:intergenic 25.0%
! GGTTCAGTAATTAATTAGAT+TGG + Chr6:55503848-55503867 None:intergenic 25.0%
! GTTGCAAGTTTAATTACAAA+AGG + Chr6:55506257-55506276 None:intergenic 25.0%
! TATATATTTGACTCTATGTG+AGG - Chr6:55501839-55501858 MsG0680033049.01.T01:intron 25.0%
! TATCAATGACAATCTTAGTA+AGG + Chr6:55504621-55504640 None:intergenic 25.0%
! TATTATGGCTTCTTTGTATT+TGG + Chr6:55505401-55505420 None:intergenic 25.0%
! TCACATAGAGTCAAATATAT+AGG + Chr6:55501840-55501859 None:intergenic 25.0%
! TCTCAAATTATTATCAGTGT+CGG + Chr6:55501945-55501964 None:intergenic 25.0%
! TCTTTCCTTTCCAAATTATA+AGG - Chr6:55503491-55503510 MsG0680033049.01.T01:intron 25.0%
! TGACTCCCAAAAAAAAAAAA+AGG + Chr6:55503392-55503411 None:intergenic 25.0%
! TGCTTACATGTCTATTTATT+AGG - Chr6:55502891-55502910 MsG0680033049.01.T01:intron 25.0%
! TGTTATTATGTACATAGCAA+TGG - Chr6:55501085-55501104 MsG0680033049.01.T01:intron 25.0%
! TTACCTACCCAAAAAAAATA+AGG - Chr6:55506599-55506618 MsG0680033049.01.T01:intron 25.0%
!! AACTTTTGTCAAAATCACAT+TGG - Chr6:55500222-55500241 MsG0680033049.01.T01:intron 25.0%
!! AAGATGTGAAATATGTTTTG+TGG - Chr6:55499824-55499843 MsG0680033049.01.T01:three_prime_UTR 25.0%
!! AATGTAATTTCATGTTGACT+AGG + Chr6:55505071-55505090 None:intergenic 25.0%
!! ATGGATATTTTCTATTGCAT+TGG - Chr6:55501202-55501221 MsG0680033049.01.T01:intron 25.0%
!! CATAAAATGAAAGTTAGTCT+TGG - Chr6:55504799-55504818 MsG0680033049.01.T01:intron 25.0%
!! GAATTTACTAAGCTAAGTTT+TGG - Chr6:55501296-55501315 MsG0680033049.01.T01:intron 25.0%
!! GTAAAGCTTTTAATCAACAA+TGG + Chr6:55499769-55499788 None:intergenic 25.0%
!! GTGTTATTGATTATAATTGC+AGG - Chr6:55507417-55507436 MsG0680033049.01.T01:CDS 25.0%
!! GTTTTTCTTGAAATTGATTG+AGG - Chr6:55503973-55503992 MsG0680033049.01.T01:intron 25.0%
!! TTCGACTTGTCAAAAATATA+AGG + Chr6:55507367-55507386 None:intergenic 25.0%
!!! AAGAAGTTCGATTTTGAAAA+CGG + Chr6:55502681-55502700 None:intergenic 25.0%
!!! ACATCTTTCAAGTTTTTCAA+AGG + Chr6:55499811-55499830 None:intergenic 25.0%
!!! ATCAATTTTTTCGATGATAG+GGG + Chr6:55507516-55507535 None:intergenic 25.0%
!!! ATTTACATCTTTTTTGGCTT+AGG - Chr6:55506732-55506751 MsG0680033049.01.T01:intron 25.0%
!!! ATTTTTCAATGGCATTTTCA+TGG - Chr6:55507395-55507414 MsG0680033049.01.T01:CDS 25.0%
!!! GGTTTTGTAGTTTTTTTCTT+AGG + Chr6:55507110-55507129 None:intergenic 25.0%
!!! TAGAGGTGTTTAATGAAATT+TGG - Chr6:55506121-55506140 MsG0680033049.01.T01:CDS 25.0%
!!! TATTTTTATTTTTGCCTTGG+GGG + Chr6:55507166-55507185 None:intergenic 25.0%
!!! TCTCGTTTTAAAAAAACAAC+GGG - Chr6:55506911-55506930 MsG0680033049.01.T01:intron 25.0%
!!! TCTTTTTAACTCTTTTGAGT+TGG - Chr6:55505755-55505774 MsG0680033049.01.T01:intron 25.0%
!!! TTCTAAAATTATTATCGGTG+TGG - Chr6:55501548-55501567 MsG0680033049.01.T01:intron 25.0%
!!! TTTACATCTTTTTTGGCTTA+GGG - Chr6:55506733-55506752 MsG0680033049.01.T01:intron 25.0%
!!! TTTGTAGTTTTTTTCTTAGG+GGG + Chr6:55507107-55507126 None:intergenic 25.0%
!!! TTTTAACTGTCTTTGTTTCT+TGG - Chr6:55501675-55501694 MsG0680033049.01.T01:intron 25.0%
!!! TTTTATATCGTTTGTCGTTT+GGG + Chr6:55504930-55504949 None:intergenic 25.0%
!!! TTTTGGCTGAATAAAAGTTT+AGG + Chr6:55502211-55502230 None:intergenic 25.0%
AAACCGAATGAAATTGTGAA+AGG - Chr6:55503804-55503823 MsG0680033049.01.T01:intron 30.0%
AAAGTAGAATCTCACTCATA+TGG - Chr6:55499738-55499757 MsG0680033049.01.T01:three_prime_UTR 30.0%
AACCAAGGAAAATTCCAATA+TGG + Chr6:55502791-55502810 None:intergenic 30.0%
AACCGAATGAAATTGTGAAA+GGG - Chr6:55503805-55503824 MsG0680033049.01.T01:intron 30.0%
AACTAACTTTCGTTGTAAAC+GGG + Chr6:55503919-55503938 None:intergenic 30.0%
ACTGACCTTATAATTTGGAA+AGG + Chr6:55503499-55503518 None:intergenic 30.0%
AGACAGTGAATCTCAAATTT+GGG - Chr6:55503711-55503730 MsG0680033049.01.T01:intron 30.0%
AGAGTTGCATATAGATGAAT+TGG + Chr6:55500927-55500946 None:intergenic 30.0%
AGGTAATTAAACATCTCCTA+CGG + Chr6:55503372-55503391 None:intergenic 30.0%
ATACCTTCTTGGTATAACAA+TGG - Chr6:55502519-55502538 MsG0680033049.01.T01:intron 30.0%
ATCACTATTGGTAAAGATGA+AGG + Chr6:55502470-55502489 None:intergenic 30.0%
ATCGGTGAAATATGTGTTAT+TGG + Chr6:55505002-55505021 None:intergenic 30.0%
ATGCTGGTATTTATCTTCAA+AGG - Chr6:55500862-55500881 MsG0680033049.01.T01:intron 30.0%
ATGTACCATATCATCACTAT+TGG + Chr6:55502482-55502501 None:intergenic 30.0%
CAAGTTTAATTACAAAAGGG+TGG + Chr6:55506253-55506272 None:intergenic 30.0%
CCAAATTATAAGGTCAGTTT+GGG - Chr6:55503501-55503520 MsG0680033049.01.T01:intron 30.0%
CCCAATAAAATCCAAACAAA+GGG + Chr6:55503869-55503888 None:intergenic 30.0%
CGTTACTCTGGTAAAATAAA+GGG + Chr6:55502646-55502665 None:intergenic 30.0%
CTTCATCAGTGTATTTGATT+GGG - Chr6:55501142-55501161 MsG0680033049.01.T01:intron 30.0%
CTTTACCAATAGTGATGATA+TGG - Chr6:55502474-55502493 MsG0680033049.01.T01:intron 30.0%
GAACTAACTTTCGTTGTAAA+CGG + Chr6:55503920-55503939 None:intergenic 30.0%
GACTCTTACTACATGTTTAA+AGG + Chr6:55504417-55504436 None:intergenic 30.0%
GTAGGTAAATCGTACAAAAT+AGG + Chr6:55506587-55506606 None:intergenic 30.0%
GTATTTATCTTCAAAGGTCA+TGG - Chr6:55500868-55500887 MsG0680033049.01.T01:intron 30.0%
GTTACTCTGGTAAAATAAAG+GGG + Chr6:55502645-55502664 None:intergenic 30.0%
TAAAATTATTATCGGTGTGG+TGG - Chr6:55501551-55501570 MsG0680033049.01.T01:intron 30.0%
TAAAATTTCATTCGTTGTGG+TGG + Chr6:55505305-55505324 None:intergenic 30.0%
TAACCATTGTTATACCAAGA+AGG + Chr6:55502525-55502544 None:intergenic 30.0%
TAATTACTGAACCCTTTGTT+TGG - Chr6:55503855-55503874 MsG0680033049.01.T01:intron 30.0%
TATGGTTGGGTACATAAATT+TGG - Chr6:55502743-55502762 MsG0680033049.01.T01:intron 30.0%
TATTGTAACTAGCGAAAAGA+CGG + Chr6:55506003-55506022 None:intergenic 30.0%
TCACATGTAAAATTGCAGTA+TGG - Chr6:55500780-55500799 MsG0680033049.01.T01:intron 30.0%
TCATTATTTACAAGACCAAC+TGG - Chr6:55506809-55506828 MsG0680033049.01.T01:intron 30.0%
TCCAAATTATAAGGTCAGTT+TGG - Chr6:55503500-55503519 MsG0680033049.01.T01:intron 30.0%
TCCCAATAAAATCCAAACAA+AGG + Chr6:55503870-55503889 None:intergenic 30.0%
TCGTTACTCTGGTAAAATAA+AGG + Chr6:55502647-55502666 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG - Chr6:55501141-55501160 MsG0680033049.01.T01:intron 30.0%
TGTAATCATAGGTATCATGT+CGG - Chr6:55501981-55502000 MsG0680033049.01.T01:intron 30.0%
TGTGTCATATAAGAGACTTT+AGG - Chr6:55500577-55500596 MsG0680033049.01.T01:CDS 30.0%
TTAGATATTCAAGGATCAGT+AGG - Chr6:55506321-55506340 MsG0680033049.01.T01:CDS 30.0%
TTCATCAGTGTATTTGATTG+GGG - Chr6:55501143-55501162 MsG0680033049.01.T01:intron 30.0%
TTCCCTTTCACAATTTCATT+CGG + Chr6:55503810-55503829 None:intergenic 30.0%
TTGAGCTGTTTAGATATTCA+AGG - Chr6:55506312-55506331 MsG0680033049.01.T01:CDS 30.0%
TTTATTAGGCAATTTCCAGT+CGG + Chr6:55505100-55505119 None:intergenic 30.0%
! AAGCATTCACTGCAAAATTT+TGG + Chr6:55506868-55506887 None:intergenic 30.0%
! AATTTGTTTAGTGAGCGTAA+GGG - Chr6:55500524-55500543 MsG0680033049.01.T01:intron 30.0%
! ACTGGTTCTTCATTTCAAAT+GGG - Chr6:55507693-55507712 MsG0680033049.01.T01:five_prime_UTR 30.0%
! AGCAACTTCATTGATGATTT+AGG + Chr6:55502875-55502894 None:intergenic 30.0%
! ATATTGACTACTATGAAGCA+AGG + Chr6:55502060-55502079 None:intergenic 30.0%
! ATTTTCCTTTTCCTTTGTCT+GGG + Chr6:55503637-55503656 None:intergenic 30.0%
! CATTCTACATATATTTTGCC+TGG - Chr6:55506656-55506675 MsG0680033049.01.T01:intron 30.0%
! GCAACTTCATTGATGATTTA+GGG + Chr6:55502874-55502893 None:intergenic 30.0%
! GTACATGCAATATTTTACTG+AGG + Chr6:55504040-55504059 None:intergenic 30.0%
! GTTTTATATCGTTTGTCGTT+TGG + Chr6:55504931-55504950 None:intergenic 30.0%
! GTTTTCAAAATCGAACTTCT+TGG - Chr6:55502680-55502699 MsG0680033049.01.T01:intron 30.0%
! TAATTACAAAAGGGTGGTTT+TGG + Chr6:55506247-55506266 None:intergenic 30.0%
! TAGTAGAATGGCATATTTTC+CGG + Chr6:55500994-55501013 None:intergenic 30.0%
! TATTTTCCTTTTCCTTTGTC+TGG + Chr6:55503638-55503657 None:intergenic 30.0%
! TGTTTGGATTTTATTGGGAA+AGG - Chr6:55503871-55503890 MsG0680033049.01.T01:intron 30.0%
! TGTTTTGTGAGAAACTTCTT+AGG + Chr6:55504861-55504880 None:intergenic 30.0%
! TTCAGCTTAAATAGGAGTAT+TGG - Chr6:55503309-55503328 MsG0680033049.01.T01:intron 30.0%
!! AACAAAACCACTTTTGTGTA+CGG + Chr6:55505273-55505292 None:intergenic 30.0%
!! ACCCTTTGTTTGGATTTTAT+TGG - Chr6:55503865-55503884 MsG0680033049.01.T01:intron 30.0%
!! ATGTTGACTAGGTTTTTGAA+GGG + Chr6:55505060-55505079 None:intergenic 30.0%
!! CACAAAACAGAAGTCATTTT+TGG - Chr6:55504872-55504891 MsG0680033049.01.T01:intron 30.0%
!! CCCTTTGTTTGGATTTTATT+GGG - Chr6:55503866-55503885 MsG0680033049.01.T01:intron 30.0%
!! CTAATCTCTAAGATTCTGAT+CGG + Chr6:55505020-55505039 None:intergenic 30.0%
!! GAATCAGTCGAATTTTTCAA+TGG - Chr6:55507384-55507403 MsG0680033049.01.T01:intron 30.0%
!! GGTTCATTCTTAGTTCTATT+TGG + Chr6:55504981-55505000 None:intergenic 30.0%
!! GTAGTACTGTTCTAAAGAAA+AGG + Chr6:55506288-55506307 None:intergenic 30.0%
!! TCAGCTTAAATAGGAGTATT+GGG - Chr6:55503310-55503329 MsG0680033049.01.T01:intron 30.0%
!! TCCTTGTTCTTCTTTTAACT+TGG - Chr6:55507572-55507591 MsG0680033049.01.T01:CDS 30.0%
!! TTTTTGAAGGGATAGTTTGT+TGG + Chr6:55505048-55505067 None:intergenic 30.0%
!!! AGTCTTTTTAAAACAGTGTC+AGG + Chr6:55500493-55500512 None:intergenic 30.0%
!!! GAACCTTATTTTTTTTGGGT+AGG + Chr6:55506605-55506624 None:intergenic 30.0%
!!! TAATCTTGTTTTTGAGACTC+AGG - Chr6:55503544-55503563 MsG0680033049.01.T01:intron 30.0%
!!! TTGTAGTTTTTTTCTTAGGG+GGG + Chr6:55507106-55507125 None:intergenic 30.0%
!!! TTTTAGTTTATAAGGTCGTC+TGG - Chr6:55500412-55500431 MsG0680033049.01.T01:intron 30.0%
!!! TTTTTTTTTTTGGGAGTCAC+AGG - Chr6:55503393-55503412 MsG0680033049.01.T01:intron 30.0%
AAATTGTGAAAGGGAAGAAG+TGG - Chr6:55503814-55503833 MsG0680033049.01.T01:intron 35.0%
ACTAACTTTCGTTGTAAACG+GGG + Chr6:55503918-55503937 None:intergenic 35.0%
AGCATCCAAATACTCTTTCT+TGG - Chr6:55502372-55502391 MsG0680033049.01.T01:intron 35.0%
AGTGAATTAGCATACCTTCT+TGG - Chr6:55502508-55502527 MsG0680033049.01.T01:intron 35.0%
ATAATTGCAGGTAGAGCAAA+CGG - Chr6:55507429-55507448 MsG0680033049.01.T01:CDS 35.0%
ATAGGCTTGCGTGATTAATA+TGG - Chr6:55503062-55503081 MsG0680033049.01.T01:intron 35.0%
ATCCAAATACTCTTTCTTGG+TGG - Chr6:55502375-55502394 MsG0680033049.01.T01:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG - Chr6:55501265-55501284 MsG0680033049.01.T01:intron 35.0%
CAAGATAAATATTCGACACC+AGG + Chr6:55501479-55501498 None:intergenic 35.0%
CACTGTCTCTTCAAATCTTT+GGG + Chr6:55503699-55503718 None:intergenic 35.0%
CATATAGATGAATTGGCAAG+AGG + Chr6:55500920-55500939 None:intergenic 35.0%
CATGTAGGGAATTAGTAGAA+TGG + Chr6:55501006-55501025 None:intergenic 35.0%
CCCAAACTGACCTTATAATT+TGG + Chr6:55503504-55503523 None:intergenic 35.0%
CGATGAAGTTATGAACAAGA+AGG + Chr6:55503599-55503618 None:intergenic 35.0%
CTATGTGAGGAATTGAAATC+TGG - Chr6:55501852-55501871 MsG0680033049.01.T01:intron 35.0%
CTTGGACATTTATATAGGTG+TGG - Chr6:55502698-55502717 MsG0680033049.01.T01:intron 35.0%
GAGACAGTGAATCTCAAATT+TGG - Chr6:55503710-55503729 MsG0680033049.01.T01:intron 35.0%
GATGGCATTTAGGGAATTAT+GGG - Chr6:55501274-55501293 MsG0680033049.01.T01:intron 35.0%
GCAGGAAAATTTCAAAATGC+TGG - Chr6:55500846-55500865 MsG0680033049.01.T01:intron 35.0%
GCCAAGTTAAAAGAAGAACA+AGG + Chr6:55507576-55507595 None:intergenic 35.0%
GTATTTGATTGGGGAATGAT+TGG - Chr6:55501152-55501171 MsG0680033049.01.T01:intron 35.0%
GTGTTGTCATCAACGTTATT+GGG + Chr6:55503739-55503758 None:intergenic 35.0%
TACATTGTTGGACTCCATAT+TGG - Chr6:55502774-55502793 MsG0680033049.01.T01:intron 35.0%
TATGTTTGGGAATGAATGGA+TGG + Chr6:55506369-55506388 None:intergenic 35.0%
TCACTGTCTCTTCAAATCTT+TGG + Chr6:55503700-55503719 None:intergenic 35.0%
TCATTCCCAAACATATCCAA+TGG - Chr6:55506374-55506393 MsG0680033049.01.T01:CDS 35.0%
TCTTAACTGTTTCAACGTGA+TGG - Chr6:55502994-55503013 MsG0680033049.01.T01:intron 35.0%
TCTTCAAATTCCATCTATGC+TGG - Chr6:55499919-55499938 MsG0680033049.01.T01:CDS 35.0%
TGCGTGATTAATATGGTCAT+TGG - Chr6:55503069-55503088 MsG0680033049.01.T01:intron 35.0%
TGCTACAGTTGCAAAACTTA+GGG + Chr6:55507136-55507155 None:intergenic 35.0%
TGGATATGTTTGGGAATGAA+TGG + Chr6:55506373-55506392 None:intergenic 35.0%
TGGTAATATATGCCATTGGT+TGG - Chr6:55501222-55501241 MsG0680033049.01.T01:intron 35.0%
TGGTCCAAAATGATAGGATT+TGG - Chr6:55503089-55503108 MsG0680033049.01.T01:intron 35.0%
TGTCCGTTCTTCAACTTAAA+TGG - Chr6:55507644-55507663 MsG0680033049.01.T01:exon 35.0%
TGTGTTGTCATCAACGTTAT+TGG + Chr6:55503740-55503759 None:intergenic 35.0%
TGTTCCAACCCTGAATATTA+AGG + Chr6:55501732-55501751 None:intergenic 35.0%
TTAAATCCATGATGCTTTCC+AGG + Chr6:55506677-55506696 None:intergenic 35.0%
TTACGAAGATTCTCGCATAA+TGG - Chr6:55504470-55504489 MsG0680033049.01.T01:intron 35.0%
TTGGAATAAGTTCAGCAGTA+AGG - Chr6:55501764-55501783 MsG0680033049.01.T01:intron 35.0%
TTGGCATGCTATTACATTGT+TGG - Chr6:55502762-55502781 MsG0680033049.01.T01:intron 35.0%
TTGGTTTCAACCAGCATTTA+GGG - Chr6:55502805-55502824 MsG0680033049.01.T01:intron 35.0%
TTGTGCTTTATGTTACCTAC+TGG - Chr6:55503418-55503437 MsG0680033049.01.T01:intron 35.0%
TTTATGTTACCTACTGGAGT+AGG - Chr6:55503424-55503443 MsG0680033049.01.T01:intron 35.0%
! ACTTCATTGATGATTTAGGG+AGG + Chr6:55502871-55502890 None:intergenic 35.0%
! AGTGACTATTTTCGTTACTC+TGG + Chr6:55502658-55502677 None:intergenic 35.0%
! ATAAGAAAGCGGAGTCTTAT+TGG - Chr6:55499703-55499722 MsG0680033049.01.T01:three_prime_UTR 35.0%
! ATCGCAACTTTGGAAAAGTT+AGG + Chr6:55507079-55507098 None:intergenic 35.0%
! ATGAACGAACTAGTTCTTGA+AGG - Chr6:55500634-55500653 MsG0680033049.01.T01:CDS 35.0%
! CAATTTGTTTAGTGAGCGTA+AGG - Chr6:55500523-55500542 MsG0680033049.01.T01:intron 35.0%
! CATATAAGAGACTTTAGGAG+AGG - Chr6:55500582-55500601 MsG0680033049.01.T01:CDS 35.0%
! CTCCATATTGGAATTTTCCT+TGG - Chr6:55502786-55502805 MsG0680033049.01.T01:intron 35.0%
! CTGGTTCTTCATTTCAAATG+GGG - Chr6:55507694-55507713 MsG0680033049.01.T01:five_prime_UTR 35.0%
! GCATTGGTAATATATGCCAT+TGG - Chr6:55501218-55501237 MsG0680033049.01.T01:intron 35.0%
! GGTACCAAATCCTATCATTT+TGG + Chr6:55503096-55503115 None:intergenic 35.0%
! GTCATTTCATCTGAAATTCG+AGG + Chr6:55503242-55503261 None:intergenic 35.0%
! GTCTTTTACCTAACTATGAG+TGG - Chr6:55506558-55506577 MsG0680033049.01.T01:CDS 35.0%
! GTTCAAGTGGTAAGAGTTTT+TGG - Chr6:55504389-55504408 MsG0680033049.01.T01:intron 35.0%
! GTTTAGGTTAGTTCAGTCTT+AGG + Chr6:55502195-55502214 None:intergenic 35.0%
! TACATTTTACCTACTCCAGT+AGG + Chr6:55503436-55503455 None:intergenic 35.0%
! TAGGGAGGATACATTTTCTA+GGG + Chr6:55502856-55502875 None:intergenic 35.0%
! TCGCAACTTTGGAAAAGTTA+GGG + Chr6:55507078-55507097 None:intergenic 35.0%
! TTAGGGAGGATACATTTTCT+AGG + Chr6:55502857-55502876 None:intergenic 35.0%
! TTGTCAAAATCACATTGGCT+AGG - Chr6:55500227-55500246 MsG0680033049.01.T01:intron 35.0%
! TTTCATCTGAAATTCGAGGT+AGG + Chr6:55503238-55503257 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - Chr6:55507140-55507159 MsG0680033049.01.T01:intron 35.0%
!! AAAGAGTATTTGGATGCTCT+TGG + Chr6:55502370-55502389 None:intergenic 35.0%
!! ATGCAGAAGGAGTATTAAGA+AGG - Chr6:55500681-55500700 MsG0680033049.01.T01:intron 35.0%
!! CACTGGTTCTTCATTTCAAA+TGG - Chr6:55507692-55507711 MsG0680033049.01.T01:five_prime_UTR 35.0%
!! CATGTTGACTAGGTTTTTGA+AGG + Chr6:55505061-55505080 None:intergenic 35.0%
!! GAATTGTCTCTAAAATTCCC+AGG + Chr6:55506225-55506244 None:intergenic 35.0%
!! TGCAGAAGGTGTTTGAAAAA+GGG + Chr6:55507607-55507626 None:intergenic 35.0%
!! TTAGCCTTAATATTCAGGGT+TGG - Chr6:55501725-55501744 MsG0680033049.01.T01:intron 35.0%
!! TTGCAGAAGGTGTTTGAAAA+AGG + Chr6:55507608-55507627 None:intergenic 35.0%
!!! CTACTTTTTCAGAACCTCAT+TGG - Chr6:55499895-55499914 MsG0680033049.01.T01:CDS 35.0%
!!! CTGTTGGTTCCTTTTCAATT+TGG - Chr6:55501402-55501421 MsG0680033049.01.T01:intron 35.0%
!!! GTACACAAAAGTGGTTTTGT+TGG - Chr6:55505272-55505291 MsG0680033049.01.T01:intron 35.0%
AAAAGTAGAGACAAAGCCAC+TGG + Chr6:55499883-55499902 None:intergenic 40.0%
AAACACATACTCCTCGGATT+AGG - Chr6:55501448-55501467 MsG0680033049.01.T01:intron 40.0%
AATACGACTAGGTGTGAGTA+GGG + Chr6:55503042-55503061 None:intergenic 40.0%
AATGCACTAGCAACACTATG+TGG - Chr6:55500810-55500829 MsG0680033049.01.T01:intron 40.0%
AATTACATTTGTCTGCCGAC+TGG - Chr6:55505082-55505101 MsG0680033049.01.T01:intron 40.0%
AATTACCTCTTTGGTCCAGT+TGG + Chr6:55506827-55506846 None:intergenic 40.0%
ACCAATATGACCAGCATAGA+TGG + Chr6:55499932-55499951 None:intergenic 40.0%
ACTAACATGAAAACCTGTGC+TGG + Chr6:55502107-55502126 None:intergenic 40.0%
AGCAGCCATTGGATATGTTT+GGG + Chr6:55506382-55506401 None:intergenic 40.0%
AGCGTAGACTGAGTCAATAT+TGG - Chr6:55507224-55507243 MsG0680033049.01.T01:intron 40.0%
AGGACTCATTCTCAATACTC+CGG + Chr6:55506488-55506507 None:intergenic 40.0%
ATAGAAGATTGACCCTCTGA+AGG - Chr6:55505225-55505244 MsG0680033049.01.T01:intron 40.0%
ATAGGCAACCACTCATAGTT+AGG + Chr6:55506569-55506588 None:intergenic 40.0%
ATAGGTGTGGTAATTGGATG+TGG - Chr6:55502711-55502730 MsG0680033049.01.T01:intron 40.0%
ATGAACCCAGACAAAGGAAA+AGG - Chr6:55503629-55503648 MsG0680033049.01.T01:intron 40.0%
ATGAAGCACAAACACAGACA+CGG - Chr6:55501888-55501907 MsG0680033049.01.T01:intron 40.0%
ATGGAAGATAGCAATTCCAG+TGG - Chr6:55499864-55499883 MsG0680033049.01.T01:exon 40.0%
ATGGCTTCTTTGTATTTGGC+TGG + Chr6:55505397-55505416 None:intergenic 40.0%
ATGTACGTAAAGATCGAGTC+GGG - Chr6:55504054-55504073 MsG0680033049.01.T01:intron 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG - Chr6:55502400-55502419 MsG0680033049.01.T01:intron 40.0%
CATGTACGTAAAGATCGAGT+CGG - Chr6:55504053-55504072 MsG0680033049.01.T01:intron 40.0%
CCAAAATGTTTAGCAGCCAT+TGG + Chr6:55506393-55506412 None:intergenic 40.0%
CCGTTCTTCAACTTAAATGG+CGG - Chr6:55507647-55507666 MsG0680033049.01.T01:exon 40.0%
CGTGCTCACAAACTTATACT+CGG + Chr6:55504236-55504255 None:intergenic 40.0%
CGTTAACGCGATAAAAAGAG+CGG - Chr6:55505963-55505982 MsG0680033049.01.T01:intron 40.0%
CTCACACCTAGTCGTATTAT+AGG - Chr6:55503044-55503063 MsG0680033049.01.T01:intron 40.0%
CTGCTACAGTTGCAAAACTT+AGG + Chr6:55507137-55507156 None:intergenic 40.0%
CTTCACAAGAGGCAAATTGA+CGG + Chr6:55501039-55501058 None:intergenic 40.0%
CTTGGTTTCAACCAGCATTT+AGG - Chr6:55502804-55502823 MsG0680033049.01.T01:intron 40.0%
GATAATCCTGTCATTGCTGT+TGG - Chr6:55501386-55501405 MsG0680033049.01.T01:intron 40.0%
GATTGTCTTGGATGGCATTT+AGG - Chr6:55501264-55501283 MsG0680033049.01.T01:intron 40.0%
GCAATGGCAAGTAATATCTC+AGG - Chr6:55501179-55501198 MsG0680033049.01.T01:intron 40.0%
GCTACAGTTGCAAAACTTAG+GGG + Chr6:55507135-55507154 None:intergenic 40.0%
GCTTGAAGAAACTTCACAAG+AGG + Chr6:55501050-55501069 None:intergenic 40.0%
GGAATGAGACATTGAAGACA+TGG - Chr6:55499845-55499864 MsG0680033049.01.T01:three_prime_UTR 40.0%
GGATGGCATTTAGGGAATTA+TGG - Chr6:55501273-55501292 MsG0680033049.01.T01:intron 40.0%
GGGAAAGGAGAGAATGAAAT+AGG - Chr6:55503886-55503905 MsG0680033049.01.T01:intron 40.0%
GGTCATTGGTCCAAAATGAT+AGG - Chr6:55503083-55503102 MsG0680033049.01.T01:intron 40.0%
GTGCTCACAAACTTATACTC+GGG + Chr6:55504235-55504254 None:intergenic 40.0%
GTTAGTACCGTACACAAAAG+TGG - Chr6:55505263-55505282 MsG0680033049.01.T01:intron 40.0%
GTTCATATGAACCCAGACAA+AGG - Chr6:55503623-55503642 MsG0680033049.01.T01:intron 40.0%
TAATACGACTAGGTGTGAGT+AGG + Chr6:55503043-55503062 None:intergenic 40.0%
TAGAAGATTGACCCTCTGAA+GGG - Chr6:55505226-55505245 MsG0680033049.01.T01:intron 40.0%
TAGCAGCCATTGGATATGTT+TGG + Chr6:55506383-55506402 None:intergenic 40.0%
TATCAAGATGACCAGCAAGA+AGG + Chr6:55501370-55501389 None:intergenic 40.0%
TCCATCTATGCTGGTCATAT+TGG - Chr6:55499928-55499947 MsG0680033049.01.T01:CDS 40.0%
TCCTTCATTGTCACGTCTTT+GGG + Chr6:55505551-55505570 None:intergenic 40.0%
TCCTTCTTTACACCAACCAA+TGG + Chr6:55501237-55501256 None:intergenic 40.0%
TGATGGGGATATAAAGCTCT+AGG + Chr6:55503942-55503961 None:intergenic 40.0%
TGCCACAGTTGCAAAACATA+GGG - Chr6:55507263-55507282 MsG0680033049.01.T01:intron 40.0%
TGCTCACAAACTTATACTCG+GGG + Chr6:55504234-55504253 None:intergenic 40.0%
TGGAATTTGAAGAGCCAATG+AGG + Chr6:55499912-55499931 None:intergenic 40.0%
TGGCAAGAGGAATATACAAG+TGG + Chr6:55500907-55500926 None:intergenic 40.0%
TGGCAAGTAATATCTCAGGA+TGG - Chr6:55501183-55501202 MsG0680033049.01.T01:intron 40.0%
TGGTGTAAAGAAGGATGGAA+TGG - Chr6:55501242-55501261 MsG0680033049.01.T01:intron 40.0%
TGGTTTCAACCAGCATTTAG+GGG - Chr6:55502806-55502825 MsG0680033049.01.T01:intron 40.0%
TGTGTTCAGAAACTTGCAGA+AGG + Chr6:55507621-55507640 None:intergenic 40.0%
TTCCTTCATTGTCACGTCTT+TGG + Chr6:55505552-55505571 None:intergenic 40.0%
TTCTTTGTATTTGGCTGGTG+TGG + Chr6:55505392-55505411 None:intergenic 40.0%
TTGGGAATGAATGGATGGTT+GGG + Chr6:55506364-55506383 None:intergenic 40.0%
TTGTGTACGGTACTAACAGT+TGG + Chr6:55505260-55505279 None:intergenic 40.0%
TTTGGGAATGAATGGATGGT+TGG + Chr6:55506365-55506384 None:intergenic 40.0%
TTTGTTCTATACACCAGCAC+AGG - Chr6:55502091-55502110 MsG0680033049.01.T01:intron 40.0%
! AAGGACATTCCACTGATTAG+GGG + Chr6:55502041-55502060 None:intergenic 40.0%
! ATTTTCCTGCACCATAAGCT+TGG + Chr6:55500836-55500855 None:intergenic 40.0%
! CAAGGACATTCCACTGATTA+GGG + Chr6:55502042-55502061 None:intergenic 40.0%
! CCAATGGCTGCTAAACATTT+TGG - Chr6:55506390-55506409 MsG0680033049.01.T01:CDS 40.0%
! CGCAACTTTGGAAAAGTTAG+GGG + Chr6:55507077-55507096 None:intergenic 40.0%
! CGCAACTTTGGGAAAGTTAA+GGG - Chr6:55507323-55507342 MsG0680033049.01.T01:intron 40.0%
! CTAAATGCTGGTTGAAACCA+AGG + Chr6:55502806-55502825 None:intergenic 40.0%
! CTTTCCCAAAGTTGCGATTT+TGG + Chr6:55507319-55507338 None:intergenic 40.0%
! GCAACTTTGGGAAAGTTAAG+GGG - Chr6:55507324-55507343 MsG0680033049.01.T01:intron 40.0%
! TCGCAACTTTGGGAAAGTTA+AGG - Chr6:55507322-55507341 MsG0680033049.01.T01:intron 40.0%
! TGTATGAGTTGAGATGCAGA+AGG - Chr6:55500668-55500687 MsG0680033049.01.T01:intron 40.0%
! TTGGTTGGTGTAAAGAAGGA+TGG - Chr6:55501237-55501256 MsG0680033049.01.T01:intron 40.0%
!! AAGGATGGAATGGATTGTCT+TGG - Chr6:55501252-55501271 MsG0680033049.01.T01:intron 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG - Chr6:55501256-55501275 MsG0680033049.01.T01:intron 40.0%
!! CAGAAGGAGTATTAAGAAGG+AGG - Chr6:55500684-55500703 MsG0680033049.01.T01:intron 40.0%
!! CCGCCATTTAAGTTGAAGAA+CGG + Chr6:55507650-55507669 None:intergenic 40.0%
!! CGGAGTCTTATTGGTATATG+TGG - Chr6:55499712-55499731 MsG0680033049.01.T01:three_prime_UTR 40.0%
!! GGGAATGATTGGTTTAGCAA+TGG - Chr6:55501163-55501182 MsG0680033049.01.T01:intron 40.0%
!! TGAGTCAATATTGGCCTTGA+GGG - Chr6:55507233-55507252 MsG0680033049.01.T01:intron 40.0%
!! TGCCACCAAGAAAGAGTATT+TGG + Chr6:55502380-55502399 None:intergenic 40.0%
!!! ATTTTGCCTGGAAAGCATCA+TGG - Chr6:55506668-55506687 MsG0680033049.01.T01:intron 40.0%
!!! TTTTTTGGCTTAGGGTCTGT+GGG - Chr6:55506741-55506760 MsG0680033049.01.T01:intron 40.0%
AAAGAGATAGCCGATCTTGC+CGG - Chr6:55500972-55500991 MsG0680033049.01.T01:intron 45.0%
AAGGAACCAACAGCAATGAC+AGG + Chr6:55501395-55501414 None:intergenic 45.0%
AATCAGTGAGTGTCTGGATG+CGG + Chr6:55505600-55505619 None:intergenic 45.0%
ACAAACACAGACACGGACAT+CGG - Chr6:55501895-55501914 MsG0680033049.01.T01:intron 45.0%
ACACTATGTGGCCAAGCTTA+TGG - Chr6:55500822-55500841 MsG0680033049.01.T01:intron 45.0%
ACCCAAAGACGTGACAATGA+AGG - Chr6:55505547-55505566 MsG0680033049.01.T01:intron 45.0%
ACGGCGAAGGAAAACATGTA+GGG + Chr6:55501020-55501039 None:intergenic 45.0%
ATACCTTGACCCCTAAATGC+TGG + Chr6:55502818-55502837 None:intergenic 45.0%
ATACGACTAGGTGTGAGTAG+GGG + Chr6:55503041-55503060 None:intergenic 45.0%
ATCCCACAAGTTAACGTTCC+TGG - Chr6:55506204-55506223 MsG0680033049.01.T01:CDS 45.0%
CAAAAATGGGCAGTCTCTCA+CGG - Chr6:55506426-55506445 MsG0680033049.01.T01:CDS 45.0%
CAGCATATCAGGTCTTGGAT+TGG + Chr6:55505519-55505538 None:intergenic 45.0%
CAGTTGCAAAACTTAGGGGA+CGG + Chr6:55507131-55507150 None:intergenic 45.0%
CATAGGTATCATGTCGGTGT+TGG - Chr6:55501987-55502006 MsG0680033049.01.T01:intron 45.0%
CCACAGTTGCAAAACATAGG+GGG - Chr6:55507265-55507284 MsG0680033049.01.T01:intron 45.0%
CGCAAGCCTATAATACGACT+AGG + Chr6:55503053-55503072 None:intergenic 45.0%
CGGCTAATCGCATGAGAATT+TGG - Chr6:55507449-55507468 MsG0680033049.01.T01:CDS 45.0%
CGTTTGGGTGAGTTTCTGAA+AGG + Chr6:55504915-55504934 None:intergenic 45.0%
CTGCCACAGTTGCAAAACAT+AGG - Chr6:55507262-55507281 MsG0680033049.01.T01:intron 45.0%
GAATGGATGGTTGGGATCTT+TGG + Chr6:55506356-55506375 None:intergenic 45.0%
GCCACAGTTGCAAAACATAG+GGG - Chr6:55507264-55507283 MsG0680033049.01.T01:intron 45.0%
GCTACGAAACACATACTCCT+CGG - Chr6:55501442-55501461 MsG0680033049.01.T01:intron 45.0%
GCTCACAAACTTATACTCGG+GGG + Chr6:55504233-55504252 None:intergenic 45.0%
GCTTGCATTATCCTTCTTGC+TGG - Chr6:55501356-55501375 MsG0680033049.01.T01:intron 45.0%
GGTGCCAAAATCGCAACTTT+GGG - Chr6:55507312-55507331 MsG0680033049.01.T01:intron 45.0%
GGTTGGGATCTTTGGTGAAT+GGG + Chr6:55506348-55506367 None:intergenic 45.0%
GTGGATGGCAAGTTATGGTT+GGG - Chr6:55502730-55502749 MsG0680033049.01.T01:intron 45.0%
GTGTGGTAATTGGATGTGGA+TGG - Chr6:55502715-55502734 MsG0680033049.01.T01:intron 45.0%
GTTCGTGTCTCTAATACCCT+TGG - Chr6:55502334-55502353 MsG0680033049.01.T01:intron 45.0%
TAGAACCCATTTGCAGAGTG+CGG - Chr6:55504092-55504111 MsG0680033049.01.T01:intron 45.0%
TAGAGACACGAACACTTGCA+AGG + Chr6:55502327-55502346 None:intergenic 45.0%
TCACGGTAAGAGACCTATGA+TGG - Chr6:55506443-55506462 MsG0680033049.01.T01:CDS 45.0%
TCCCACAAGTTAACGTTCCT+GGG - Chr6:55506205-55506224 MsG0680033049.01.T01:CDS 45.0%
TCTTGGATGTGACATGCCAA+GGG + Chr6:55502353-55502372 None:intergenic 45.0%
TGGATGTGGATGGCAAGTTA+TGG - Chr6:55502725-55502744 MsG0680033049.01.T01:intron 45.0%
TGGTTGGGATCTTTGGTGAA+TGG + Chr6:55506349-55506368 None:intergenic 45.0%
TGTACGGTACTAACAGTTGG+TGG + Chr6:55505257-55505276 None:intergenic 45.0%
TGTGAAAGGGAAGAAGTGGA+AGG - Chr6:55503818-55503837 MsG0680033049.01.T01:intron 45.0%
TGTGGATGGCAAGTTATGGT+TGG - Chr6:55502729-55502748 MsG0680033049.01.T01:intron 45.0%
TTTGGCAGCATATCAGGTCT+TGG + Chr6:55505524-55505543 None:intergenic 45.0%
! GCAAGGACATTCCACTGATT+AGG + Chr6:55502043-55502062 None:intergenic 45.0%
! GCCATTGGTTGGTGTAAAGA+AGG - Chr6:55501233-55501252 MsG0680033049.01.T01:intron 45.0%
! GGCATATTTTCCGGCAAGAT+CGG + Chr6:55500985-55501004 None:intergenic 45.0%
! TGCAAATGGGTTCTACAACC+CGG + Chr6:55504087-55504106 None:intergenic 45.0%
! TGGAACATGATGCTGCTTCT+TGG - Chr6:55501745-55501764 MsG0680033049.01.T01:intron 45.0%
! TGGACTTGTTTGTGTCGTGT+CGG - Chr6:55501571-55501590 MsG0680033049.01.T01:intron 45.0%
! TTCCCAGGAACGTTAACTTG+TGG + Chr6:55506210-55506229 None:intergenic 45.0%
!! ATTATGTGTCGGTGTCGTGT+CGG + Chr6:55501509-55501528 None:intergenic 45.0%
!! CTGAGTCAATATTGGCCTTG+AGG - Chr6:55507232-55507251 MsG0680033049.01.T01:intron 45.0%
!! TCCCAGGAACGTTAACTTGT+GGG + Chr6:55506209-55506228 None:intergenic 45.0%
!!! CTTTTTTGGCTTAGGGTCTG+TGG - Chr6:55506740-55506759 MsG0680033049.01.T01:intron 45.0%
!!! TTTTTGGCTTAGGGTCTGTG+GGG - Chr6:55506742-55506761 MsG0680033049.01.T01:intron 45.0%
AAGAGGCAAATTGACGGCGA+AGG + Chr6:55501033-55501052 None:intergenic 50.0%
ACTGGAACACCCCTAATCAG+TGG - Chr6:55502029-55502048 MsG0680033049.01.T01:intron 50.0%
AGAACCCATTTGCAGAGTGC+GGG - Chr6:55504093-55504112 MsG0680033049.01.T01:intron 50.0%
CAACCAGCATTTAGGGGTCA+AGG - Chr6:55502812-55502831 MsG0680033049.01.T01:intron 50.0%
CAAGACCAACTGGACCAAAG+AGG - Chr6:55506819-55506838 MsG0680033049.01.T01:intron 50.0%
CAGTTGCAAAACATAGGGGG+CGG - Chr6:55507268-55507287 MsG0680033049.01.T01:intron 50.0%
CCAGACAATCAGTGAGTGTC+TGG + Chr6:55505606-55505625 None:intergenic 50.0%
CTCTTGGATGTGACATGCCA+AGG + Chr6:55502354-55502373 None:intergenic 50.0%
GACCTATGATGGTTGCCTAC+CGG - Chr6:55506454-55506473 MsG0680033049.01.T01:CDS 50.0%
GACGGCGAAGGAAAACATGT+AGG + Chr6:55501021-55501040 None:intergenic 50.0%
GGGTGCCAAAATCGCAACTT+TGG - Chr6:55507311-55507330 MsG0680033049.01.T01:intron 50.0%
GGTCTCTTTGGCAGCATATC+AGG + Chr6:55505530-55505549 None:intergenic 50.0%
GTCACGTCTTTGGGTCTCTT+TGG + Chr6:55505542-55505561 None:intergenic 50.0%
TGGTGGTTGAACCCTTCAGA+GGG + Chr6:55505240-55505259 None:intergenic 50.0%
! CAATACTCCGGCTTTGTCTC+CGG + Chr6:55506476-55506495 None:intergenic 50.0%
! CCAGACACTCACTGATTGTC+TGG - Chr6:55505603-55505622 MsG0680033049.01.T01:intron 50.0%
! CCCCCTATGTTTTGCAACTG+TGG + Chr6:55507268-55507287 None:intergenic 50.0%
! TCTAAGGCACGACAATGCTC+AGG + Chr6:55505631-55505650 None:intergenic 50.0%
! TTGGTGGTTGAACCCTTCAG+AGG + Chr6:55505241-55505260 None:intergenic 50.0%
!! TGTGGCAGTTTTGACCCTCA+AGG + Chr6:55507250-55507269 None:intergenic 50.0%
CACACGTGGCACCTCACTTA+GGG - Chr6:55507192-55507211 MsG0680033049.01.T01:intron 55.0%
CTCCGGTAGGCAACCATCAT+AGG + Chr6:55506459-55506478 None:intergenic 55.0%
CTGTGGGGAGGAACAATGTG+CGG - Chr6:55506757-55506776 MsG0680033049.01.T01:intron 55.0%
GGGGGGCAAAATCGCAACTT+TGG + Chr6:55507089-55507108 None:intergenic 55.0%
TCACACGTGGCACCTCACTT+AGG - Chr6:55507191-55507210 MsG0680033049.01.T01:intron 55.0%
TGACTCAGTCTACGCTGACG+TGG + Chr6:55507220-55507239 None:intergenic 55.0%
TGTGGCCAAGCTTATGGTGC+AGG - Chr6:55500828-55500847 MsG0680033049.01.T01:intron 55.0%
TTCCAGTGTCAGACACGCGT+CGG + Chr6:55502016-55502035 None:intergenic 55.0%
TTCGCCCGCACTCTGCAAAT+GGG + Chr6:55504100-55504119 None:intergenic 55.0%
TTGCCTACCGGAGACAAAGC+CGG - Chr6:55506466-55506485 MsG0680033049.01.T01:CDS 55.0%
!! TGTAGCAGTTTTGGCCCCCA+AGG - Chr6:55507149-55507168 MsG0680033049.01.T01:intron 55.0%
ACCAGGACACGCCTAATCCG+AGG + Chr6:55501462-55501481 None:intergenic 60.0%
ATCGAGTCGGGTCGCAATCC+GGG - Chr6:55504066-55504085 MsG0680033049.01.T01:intron 60.0%
CAGAGTGCGGGCGAAGAAGA+TGG - Chr6:55504105-55504124 MsG0680033049.01.T01:intron 60.0%
CTCCTACGGTACGTGACCCA+TGG + Chr6:55503358-55503377 None:intergenic 60.0%
CTCTGGTACGCGATGGCCAT+GGG - Chr6:55503339-55503358 MsG0680033049.01.T01:intron 60.0%
CTGACGTGGCACCCTAAGTG+AGG + Chr6:55507206-55507225 None:intergenic 60.0%
CTTCGCCCGCACTCTGCAAA+TGG + Chr6:55504101-55504120 None:intergenic 60.0%
GATCGAGTCGGGTCGCAATC+CGG - Chr6:55504065-55504084 MsG0680033049.01.T01:intron 60.0%
TCTCTGGTACGCGATGGCCA+TGG - Chr6:55503338-55503357 MsG0680033049.01.T01:intron 60.0%
TGGCCATCGCGTACCAGAGA+CGG + Chr6:55503338-55503357 None:intergenic 60.0%
TTGGCTTAGGGTCTGTGGGG+AGG - Chr6:55506745-55506764 MsG0680033049.01.T01:intron 60.0%
! ACTCCGGCTTTGTCTCCGGT+AGG + Chr6:55506472-55506491 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG - Chr6:55501458-55501477 MsG0680033049.01.T01:intron 60.0%
CACCGACGCGTGTCTGACAC+TGG - Chr6:55502011-55502030 MsG0680033049.01.T01:intron 65.0%
GGCCATGGGTCACGTACCGT+AGG - Chr6:55503353-55503372 MsG0680033049.01.T01:intron 65.0%
!! GGAGTATTGGGCGCCGTCTC+TGG - Chr6:55503322-55503341 MsG0680033049.01.T01:intron 65.0%
GCGCCGTCTCTGGTACGCGA+TGG - Chr6:55503332-55503351 MsG0680033049.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 55499673 55507739 55499673 ID=MsG0680033049.01;Name=MsG0680033049.01
Chr6 mRNA 55499673 55507739 55499673 ID=MsG0680033049.01.T01;Parent=MsG0680033049.01;Name=MsG0680033049.01.T01;_AED=0.44;_eAED=0.44;_QI=84|0.66|0.57|1|0.5|0.42|7|205|509
Chr6 exon 55507395 55507739 55507395 ID=MsG0680033049.01.T01:exon:8923;Parent=MsG0680033049.01.T01
Chr6 exon 55505989 55506614 55505989 ID=MsG0680033049.01.T01:exon:8924;Parent=MsG0680033049.01.T01
Chr6 exon 55505627 55505683 55505627 ID=MsG0680033049.01.T01:exon:8925;Parent=MsG0680033049.01.T01
Chr6 exon 55504883 55505079 55504883 ID=MsG0680033049.01.T01:exon:8926;Parent=MsG0680033049.01.T01
Chr6 exon 55504579 55504776 55504579 ID=MsG0680033049.01.T01:exon:8927;Parent=MsG0680033049.01.T01
Chr6 exon 55500564 55500658 55500564 ID=MsG0680033049.01.T01:exon:8928;Parent=MsG0680033049.01.T01
Chr6 exon 55499673 55499973 55499673 ID=MsG0680033049.01.T01:exon:8929;Parent=MsG0680033049.01.T01
Chr6 five_prime_UTR 55507656 55507739 55507656 ID=MsG0680033049.01.T01:five_prime_utr;Parent=MsG0680033049.01.T01
Chr6 CDS 55507395 55507655 55507395 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55505989 55506614 55505989 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55505627 55505683 55505627 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55504883 55505079 55504883 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55504579 55504776 55504579 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55500564 55500658 55500564 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 CDS 55499878 55499973 55499878 ID=MsG0680033049.01.T01:cds;Parent=MsG0680033049.01.T01
Chr6 three_prime_UTR 55499673 55499877 55499673 ID=MsG0680033049.01.T01:three_prime_utr;Parent=MsG0680033049.01.T01
Gene Sequence

>MsG0680033049.01.T01

ATGGAAGCACCATTGTTGATTAAAAGCTTTACTTCAGAAAATGATTACTTACCTTTGAAAAACTTGAAAGATGTGAAATATGTTTTGTGGAATGAGACATTGAAGACATGGAAGATAGCAATTCCAGTGGCTTTGTCTCTACTTTTTCAGAACCTCATTGGCTCTTCAAATTCCATCTATGCTGGTCATATTGGTGATATTCAGCTCTCTTCTTACTCTGTGTATCAAAGTGTCATCACTACTATCTATTTCTCTATTTTGTATGGTATGTCAAATGCACTAGCAACACTATGTGGCCAAGCTTATGGTGCAGGAAAATTTCAAAATGCTGGTATTTATCTTCAAAGGTCATGGATAGTACTCTTCACCACTTGTATATTCCTCTTGCCAATTCATCTATATGCAACTCTAATCTTAAAACTTCTTGGTCAAGAAAAAGAGATAGCCGATCTTGCCGGAAAATATGCCATTCTACTAATTCCCTACATGTTTTCCTTCGCCGTCAATTTGCCTCTTGTGAAGTTTCTTCAAGCACAAAGCAAAGTTAATGTTATTATGTACATAGCAATGGTTACATTACTCATTCAAAATGTTCTACTTTACATCTTCATCAGTGTATTTGATTGGGGAATGATTGGTTTAGCAATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATATATGCCATTGGTTGGTGTAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACTAAGCTAAGTTTTGGTTCATCTGTAATGATTTGTTTAGAACAATGGTATACTGCTTGCATTATCCTTCTTGCTGGTCATCTTGATAATCCTGTCATTGCTGTTGGTTCCTTTTCAATTTGCCTTAATATTCAGGGTTGGAACATGATGCTGCTTCTTGGAATAAGTTCAGCAGTAAGTGTTCGTGTCTCTAATACCCTTGGCATGTCACATCCAAGAGCATCCAAATACTCTTTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTGCTTCAGTAAAGAAAAATTTGCCTTCATCTTTACCAATAGTGATGATATGGTACATGCTGCTAGTGAATTAGCATACCTTCTTGTTTTGACCCCTTTATTTTACCAGAGTAACGAAAATAGTCACTCCGTTTTCAAAATCGAACTTCTTGGACATTTATATAGGTGTGGTAATTGGATGTGGATGGCAAGTTATGGTTGGGTACATAAATTTGGCATGCTATTACATTGTTGGACTCCATATTGGAATTTTCCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGTCTGTGGGGAGGAACAATGTGCGGCAATATTCTTCAGATTTTAGTGCTCATAGTCATTATTTACAAGACCAACTGGACCAAAGAGGTAATTATGTAGAGCAAACGGCTAATCGCATGAGAATTTGGAGCTCTAACAACCTTCAAAACGAGAAATTTTTTTTCTTCTGCCCCTATCATCGAAAAAATTGA

Protein sequence

>MsG0680033049.01.T01

MEAPLLIKSFTSENDYLPLKNLKDVKYVLWNETLKTWKIAIPVALSLLFQNLIGSSNSIYAGHIGDIQLSSYSVYQSVITTIYFSILYGMSNALATLCGQAYGAGKFQNAGIYLQRSWIVLFTTCIFLLPIHLYATLILKLLGQEKEIADLAGKYAILLIPYMFSFAVNLPLVKFLQAQSKVNVIMYIAMVTLLIQNVLLYIFISVFDWGMIGLAMASNISGWIFSIALVIYAIGWCKEGWNGLSWMAFRELWEFTKLSFGSSVMICLEQWYTACIILLAGHLDNPVIAVGSFSICLNIQGWNMMLLLGISSAVSVRVSNTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVICFSKEKFAFIFTNSDDMVHAASELAYLLVLTPLFYQSNENSHSVFKIELLGHLYRCGNWMWMASYGWVHKFGMLLHCWTPYWNFPWFQPAFRGQGSVGRNNVRQYSSDFSAHSHYLQDQLDQRGNYVEQTANRMRIWSSNNLQNEKFFFFCPYHRKN*