Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1351590 | AHF50207.1 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 1.68e-121 | 349 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1351590 | sp|Q9FGT8|TIL_ARATH | 76.970 | 165 | 38 | 0 | 4 | 168 | 2 | 166 | 1.17e-91 | 267 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1351590 | W0G592 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 8.04e-122 | 349 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008330 | Msa1351590 | 0.814506 | 1.488450e-51 | -8.615850e-47 |
Msa0012740 | Msa1351590 | 0.818345 | 2.057555e-52 | -8.615850e-47 |
Msa0021980 | Msa1351590 | 0.829427 | 5.180726e-55 | -8.615850e-47 |
Msa0026670 | Msa1351590 | 0.813112 | 3.018686e-51 | -8.615850e-47 |
Msa0039200 | Msa1351590 | 0.802860 | 4.591010e-49 | -8.615850e-47 |
Msa0040190 | Msa1351590 | 0.817760 | 2.790463e-52 | -8.615850e-47 |
Msa0053480 | Msa1351590 | 0.802802 | 4.719895e-49 | -8.615850e-47 |
Msa0074760 | Msa1351590 | 0.804872 | 1.753413e-49 | -8.615850e-47 |
Msa0077330 | Msa1351590 | 0.802826 | 4.666325e-49 | -8.615850e-47 |
Msa0087880 | Msa1351590 | 0.818252 | 2.159964e-52 | -8.615850e-47 |
Msa0117300 | Msa1351590 | 0.806890 | 6.601759e-50 | -8.615850e-47 |
Msa0120310 | Msa1351590 | 0.815656 | 8.266683e-52 | -8.615850e-47 |
Msa1349410 | Msa1351590 | 0.802689 | 4.980209e-49 | -8.615850e-47 |
Msa1351560 | Msa1351590 | 0.817086 | 3.957511e-52 | -8.615850e-47 |
Msa1351590 | Msa1353280 | 0.800592 | 1.340683e-48 | -8.615850e-47 |
Msa1351590 | Msa1353760 | 0.808411 | 3.138049e-50 | -8.615850e-47 |
Msa1351590 | Msa1368660 | 0.823284 | 1.504482e-53 | -8.615850e-47 |
Msa1351590 | Msa1374210 | 0.807447 | 5.033255e-50 | -8.615850e-47 |
Msa1351590 | Msa1381720 | 0.822672 | 2.089637e-53 | -8.615850e-47 |
Msa1351590 | Msa1385940 | 0.806762 | 7.028987e-50 | -8.615850e-47 |
Msa1351590 | Msa1388070 | 0.834317 | 3.214414e-56 | -8.615850e-47 |
Msa1351590 | Msa1388270 | 0.813249 | 2.816379e-51 | -8.615850e-47 |
Msa1351590 | Msa1393600 | 0.857824 | 1.254757e-62 | -8.615850e-47 |
Msa1351590 | Msa1405190 | 0.822476 | 2.321422e-53 | -8.615850e-47 |
Msa1351590 | Msa1413220 | 0.811026 | 8.600385e-51 | -8.615850e-47 |
Msa1351590 | Msa1413880 | 0.806898 | 6.578699e-50 | -8.615850e-47 |
Msa1351590 | Msa1432250 | 0.812511 | 4.086724e-51 | -8.615850e-47 |
Msa1351590 | Msa1440160 | 0.819173 | 1.334279e-52 | -8.615850e-47 |
Msa1351590 | Msa1446220 | 0.820685 | 6.019940e-53 | -8.615850e-47 |
Msa1351590 | Msa1452200 | 0.802613 | 5.163208e-49 | -8.615850e-47 |
Msa1351590 | Msa1454940 | 0.820893 | 5.393039e-53 | -8.615850e-47 |
Msa1351590 | Msa1456410 | 0.821213 | 4.549868e-53 | -8.615850e-47 |
Msa1351590 | Msa1456790 | 0.817560 | 3.095549e-52 | -8.615850e-47 |
Msa0608940 | Msa1351590 | 0.803930 | 2.755269e-49 | -8.615850e-47 |
Msa0610850 | Msa1351590 | 0.813055 | 3.106354e-51 | -8.615850e-47 |
Msa0619480 | Msa1351590 | 0.838844 | 2.258616e-57 | -8.615850e-47 |
Msa0623360 | Msa1351590 | 0.817167 | 3.795277e-52 | -8.615850e-47 |
Msa0635990 | Msa1351590 | 0.803671 | 3.119148e-49 | -8.615850e-47 |
Msa0639640 | Msa1351590 | 0.821772 | 3.380577e-53 | -8.615850e-47 |
Msa0648200 | Msa1351590 | 0.810858 | 9.350600e-51 | -8.615850e-47 |
Msa0649530 | Msa1351590 | 0.805479 | 1.308467e-49 | -8.615850e-47 |
Msa0657860 | Msa1351590 | 0.806824 | 6.817474e-50 | -8.615850e-47 |
Msa0659640 | Msa1351590 | 0.842059 | 3.257354e-58 | -8.615850e-47 |
Msa0665010 | Msa1351590 | 0.805721 | 1.164174e-49 | -8.615850e-47 |
Msa0674200 | Msa1351590 | 0.810334 | 1.214038e-50 | -8.615850e-47 |
Msa0687320 | Msa1351590 | 0.854705 | 1.030020e-61 | -8.615850e-47 |
Msa0691140 | Msa1351590 | 0.809267 | 2.059243e-50 | -8.615850e-47 |
Msa0691740 | Msa1351590 | 0.800557 | 1.362660e-48 | -8.615850e-47 |
Msa0693560 | Msa1351590 | 0.816286 | 5.981865e-52 | -8.615850e-47 |
Msa0702200 | Msa1351590 | 0.812146 | 4.908953e-51 | -8.615850e-47 |
Msa0702310 | Msa1351590 | 0.810333 | 1.214130e-50 | -8.615850e-47 |
Msa0702620 | Msa1351590 | 0.805436 | 1.336105e-49 | -8.615850e-47 |
Msa0714060 | Msa1351590 | 0.817696 | 2.884137e-52 | -8.615850e-47 |
Msa0714200 | Msa1351590 | 0.818288 | 2.119275e-52 | -8.615850e-47 |
Msa0729780 | Msa1351590 | 0.814147 | 1.786387e-51 | -8.615850e-47 |
Msa0736930 | Msa1351590 | 0.807934 | 3.965316e-50 | -8.615850e-47 |
Msa0738600 | Msa1351590 | 0.813355 | 2.669863e-51 | -8.615850e-47 |
Msa0755500 | Msa1351590 | 0.805662 | 1.197972e-49 | -8.615850e-47 |
Msa0755590 | Msa1351590 | 0.801072 | 1.069960e-48 | -8.615850e-47 |
Msa0756440 | Msa1351590 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
Msa0766880 | Msa1351590 | 0.828470 | 8.829289e-55 | -8.615850e-47 |
Msa0770020 | Msa1351590 | 0.841894 | 3.601868e-58 | -8.615850e-47 |
Msa0775420 | Msa1351590 | 0.804573 | 2.024829e-49 | -8.615850e-47 |
Msa0796610 | Msa1351590 | 0.822790 | 1.962349e-53 | -8.615850e-47 |
Msa0797240 | Msa1351590 | 0.808698 | 2.726060e-50 | -8.615850e-47 |
Msa0807980 | Msa1351590 | 0.815456 | 9.157633e-52 | -8.615850e-47 |
Msa0815950 | Msa1351590 | 0.818594 | 1.806671e-52 | -8.615850e-47 |
Msa0818950 | Msa1351590 | 0.812514 | 4.079574e-51 | -8.615850e-47 |
Msa0833910 | Msa1351590 | 0.830649 | 2.607561e-55 | -8.615850e-47 |
Msa0834160 | Msa1351590 | 0.830346 | 3.092090e-55 | -8.615850e-47 |
Msa0835550 | Msa1351590 | 0.824109 | 9.643014e-54 | -8.615850e-47 |
Msa0840570 | Msa1351590 | 0.808813 | 2.575056e-50 | -8.615850e-47 |
Msa0133670 | Msa1351590 | 0.804094 | 2.547594e-49 | -8.615850e-47 |
Msa0133880 | Msa1351590 | 0.801864 | 7.362500e-49 | -8.615850e-47 |
Msa0134550 | Msa1351590 | 0.815658 | 8.259575e-52 | -8.615850e-47 |
Msa0138380 | Msa1351590 | 0.823738 | 1.178101e-53 | -8.615850e-47 |
Msa0156780 | Msa1351590 | 0.816077 | 6.659059e-52 | -8.615850e-47 |
Msa0184120 | Msa1351590 | 0.808270 | 3.363981e-50 | -8.615850e-47 |
Msa0184850 | Msa1351590 | 0.813218 | 2.861546e-51 | -8.615850e-47 |
Msa0188500 | Msa1351590 | 0.805836 | 1.101393e-49 | -8.615850e-47 |
Msa0198140 | Msa1351590 | 0.800617 | 1.325293e-48 | -8.615850e-47 |
Msa0198220 | Msa1351590 | 0.806995 | 6.274461e-50 | -8.615850e-47 |
Msa0221940 | Msa1351590 | 0.827407 | 1.591401e-54 | -8.615850e-47 |
Msa0228360 | Msa1351590 | 0.807739 | 4.363297e-50 | -8.615850e-47 |
Msa0230980 | Msa1351590 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
Msa1230190 | Msa1351590 | 0.812852 | 3.441060e-51 | -8.615850e-47 |
Msa1245300 | Msa1351590 | 0.814181 | 1.755852e-51 | -8.615850e-47 |
Msa1252040 | Msa1351590 | 0.809537 | 1.801740e-50 | -8.615850e-47 |
Msa1262740 | Msa1351590 | 0.809698 | 1.663859e-50 | -8.615850e-47 |
Msa1263610 | Msa1351590 | 0.811845 | 5.708918e-51 | -8.615850e-47 |
Msa1264140 | Msa1351590 | 0.966776 | 2.250093e-126 | -8.615850e-47 |
Msa1264230 | Msa1351590 | 0.806684 | 7.297600e-50 | -8.615850e-47 |
Msa1289340 | Msa1351590 | 0.812683 | 3.748346e-51 | -8.615850e-47 |
Msa1296600 | Msa1351590 | 0.829963 | 3.835125e-55 | -8.615850e-47 |
Msa1301410 | Msa1351590 | 0.806175 | 9.347142e-50 | -8.615850e-47 |
Msa1302780 | Msa1351590 | 0.868732 | 5.247283e-66 | -8.615850e-47 |
Msa1310300 | Msa1351590 | 0.808838 | 2.543476e-50 | -8.615850e-47 |
Msa1323920 | Msa1351590 | 0.806064 | 9.861244e-50 | -8.615850e-47 |
Msa1329010 | Msa1351590 | 0.824711 | 6.959879e-54 | -8.615850e-47 |
Msa1329660 | Msa1351590 | 0.845385 | 4.197985e-59 | -8.615850e-47 |
Msa1329820 | Msa1351590 | 0.800617 | 1.324835e-48 | -8.615850e-47 |
Msa1330910 | Msa1351590 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
Msa1342400 | Msa1351590 | 0.863703 | 2.059325e-64 | -8.615850e-47 |
Msa1343540 | Msa1351590 | 0.822479 | 2.317492e-53 | -8.615850e-47 |
Msa0370510 | Msa1351590 | 0.828184 | 1.035188e-54 | -8.615850e-47 |
Msa0373110 | Msa1351590 | 0.816576 | 5.148917e-52 | -8.615850e-47 |
Msa0379720 | Msa1351590 | 0.804111 | 2.526451e-49 | -8.615850e-47 |
Msa0403720 | Msa1351590 | 0.842748 | 2.139703e-58 | -8.615850e-47 |
Msa0413590 | Msa1351590 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
Msa0417130 | Msa1351590 | 0.800216 | 1.598956e-48 | -8.615850e-47 |
Msa0427050 | Msa1351590 | 0.810956 | 8.908311e-51 | -8.615850e-47 |
Msa0429100 | Msa1351590 | 0.807960 | 3.916268e-50 | -8.615850e-47 |
Msa0431940 | Msa1351590 | 0.824433 | 8.093601e-54 | -8.615850e-47 |
Msa0448400 | Msa1351590 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
Msa0451370 | Msa1351590 | 0.834162 | 3.515820e-56 | -8.615850e-47 |
Msa0456480 | Msa1351590 | 0.806857 | 6.711193e-50 | -8.615850e-47 |
Msa0467480 | Msa1351590 | 0.829947 | 3.870532e-55 | -8.615850e-47 |
Msa0472870 | Msa1351590 | 0.809568 | 1.773960e-50 | -8.615850e-47 |
Msa0475830 | Msa1351590 | 0.843648 | 1.230967e-58 | -8.615850e-47 |
Msa0995660 | Msa1351590 | 0.814967 | 1.176105e-51 | -8.615850e-47 |
Msa0998940 | Msa1351590 | 0.857201 | 1.917499e-62 | -8.615850e-47 |
Msa1029190 | Msa1351590 | 0.811541 | 6.648891e-51 | -8.615850e-47 |
Msa1033230 | Msa1351590 | 0.835432 | 1.684064e-56 | -8.615850e-47 |
Msa1071460 | Msa1351590 | 0.826160 | 3.159913e-54 | -8.615850e-47 |
Msa1072770 | Msa1351590 | 0.841004 | 6.181087e-58 | -8.615850e-47 |
Msa1086830 | Msa1351590 | 0.802044 | 6.760918e-49 | -8.615850e-47 |
Msa1104430 | Msa1351590 | 0.808246 | 3.403713e-50 | -8.615850e-47 |
Msa0240460 | Msa1351590 | 0.824876 | 6.365425e-54 | -8.615850e-47 |
Msa0256170 | Msa1351590 | 0.819354 | 1.214021e-52 | -8.615850e-47 |
Msa0263520 | Msa1351590 | 0.816287 | 5.977987e-52 | -8.615850e-47 |
Msa0268220 | Msa1351590 | 0.809073 | 2.265430e-50 | -8.615850e-47 |
Msa0278340 | Msa1351590 | 0.801399 | 9.171957e-49 | -8.615850e-47 |
Msa0338670 | Msa1351590 | 0.816141 | 6.444852e-52 | -8.615850e-47 |
Msa0343460 | Msa1351590 | 0.801215 | 9.999924e-49 | -8.615850e-47 |
Msa0358720 | Msa1351590 | 0.802625 | 5.134069e-49 | -8.615850e-47 |
Msa1108780 | Msa1351590 | 0.804060 | 2.589932e-49 | -8.615850e-47 |
Msa1122480 | Msa1351590 | 0.833648 | 4.726024e-56 | -8.615850e-47 |
Msa1147600 | Msa1351590 | 0.812847 | 3.449873e-51 | -8.615850e-47 |
Msa1152500 | Msa1351590 | 0.801577 | 8.430736e-49 | -8.615850e-47 |
Msa1154770 | Msa1351590 | 0.809231 | 2.095495e-50 | -8.615850e-47 |
Msa1161120 | Msa1351590 | 0.827455 | 1.549543e-54 | -8.615850e-47 |
Msa1161520 | Msa1351590 | 0.801913 | 7.193599e-49 | -8.615850e-47 |
Msa1173410 | Msa1351590 | 0.801434 | 9.020881e-49 | -8.615850e-47 |
Msa1190820 | Msa1351590 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
Msa1203840 | Msa1351590 | 0.818587 | 1.813870e-52 | -8.615850e-47 |
Msa1203860 | Msa1351590 | 0.811876 | 5.621647e-51 | -8.615850e-47 |
Msa1204110 | Msa1351590 | 0.825866 | 3.710319e-54 | -8.615850e-47 |
Msa1204380 | Msa1351590 | 0.815435 | 9.256867e-52 | -8.615850e-47 |
Msa1211100 | Msa1351590 | 0.822706 | 2.051910e-53 | -8.615850e-47 |
Msa1211120 | Msa1351590 | 0.825032 | 5.845669e-54 | -8.615850e-47 |
Msa1211280 | Msa1351590 | 0.802210 | 6.249681e-49 | -8.615850e-47 |
Msa1211370 | Msa1351590 | 0.808376 | 3.193401e-50 | -8.615850e-47 |
Msa1215660 | Msa1351590 | 0.801663 | 8.095753e-49 | -8.615850e-47 |
Msa1216700 | Msa1351590 | 0.841140 | 5.692127e-58 | -8.615850e-47 |
Msa1216900 | Msa1351590 | 0.821813 | 3.306423e-53 | -8.615850e-47 |
Msa0496460 | Msa1351590 | 0.815890 | 7.331124e-52 | -8.615850e-47 |
Msa0496470 | Msa1351590 | 0.807370 | 5.225671e-50 | -8.615850e-47 |
Msa0498920 | Msa1351590 | 0.802689 | 4.979996e-49 | -8.615850e-47 |
Msa0515400 | Msa1351590 | 0.800638 | 1.312211e-48 | -8.615850e-47 |
Msa0520810 | Msa1351590 | 0.810115 | 1.352911e-50 | -8.615850e-47 |
Msa0546370 | Msa1351590 | 0.800486 | 1.409350e-48 | -8.615850e-47 |
Msa0555510 | Msa1351590 | 0.825935 | 3.572413e-54 | -8.615850e-47 |
Msa0565760 | Msa1351590 | 0.809733 | 1.635611e-50 | -8.615850e-47 |
Msa0566010 | Msa1351590 | 0.814402 | 1.568891e-51 | -8.615850e-47 |
Msa0568490 | Msa1351590 | 0.802853 | 4.605411e-49 | -8.615850e-47 |
Msa0569630 | Msa1351590 | 0.802806 | 4.710984e-49 | -8.615850e-47 |
Msa0578890 | Msa1351590 | 0.817939 | 2.541813e-52 | -8.615850e-47 |
Msa0582090 | Msa1351590 | 0.813148 | 2.963861e-51 | -8.615850e-47 |
Msa0584590 | Msa1351590 | 0.823048 | 1.708625e-53 | -8.615850e-47 |
Msa0587060 | Msa1351590 | 0.802550 | 5.319930e-49 | -8.615850e-47 |
Msa0595240 | Msa1351590 | 0.810821 | 9.524518e-51 | -8.615850e-47 |
Msa0596080 | Msa1351590 | 0.803063 | 4.168771e-49 | -8.615850e-47 |
Msa0848980 | Msa1351590 | 0.806370 | 8.503619e-50 | -8.615850e-47 |
Msa0895860 | Msa1351590 | 0.826641 | 2.426966e-54 | -8.615850e-47 |
Msa0899080 | Msa1351590 | 0.810481 | 1.128412e-50 | -8.615850e-47 |
Msa0924820 | Msa1351590 | 0.805677 | 1.189044e-49 | -8.615850e-47 |
Msa0927890 | Msa1351590 | 0.843005 | 1.828194e-58 | -8.615850e-47 |
Msa0967250 | Msa1351590 | 0.834585 | 2.753235e-56 | -8.615850e-47 |
Msa0967260 | Msa1351590 | 0.855251 | 7.149178e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1351590 | MtrunA17_Chr4g0074351 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 9.96e-122 | 340 |
Msa1351590 | MtrunA17_Chr4g0074361 | 81.761 | 159 | 29 | 0 | 10 | 168 | 32 | 190 | 6.45e-96 | 275 |
Msa1351590 | MtrunA17_Chr4g0074341 | 77.439 | 164 | 37 | 0 | 5 | 168 | 103 | 266 | 2.01e-94 | 275 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1351590 | AT5G58070.1 | 76.970 | 165 | 38 | 0 | 4 | 168 | 2 | 166 | 1.19e-92 | 267 |
Find 82 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTGGCTTCATCACTTT+TGG | 0.137021 | tig0012325:-6794 | Msa1351590:intergenic |
GTTATTGCTTCCTCTATTTC+AGG | 0.192532 | tig0012325:-6525 | Msa1351590:intergenic |
ATTGATTCATATTAGAGTTC+TGG | 0.264894 | tig0012325:-7964 | Msa1351590:intergenic |
TTCCTGCTGTTGGAGATTAC+TGG | 0.269337 | tig0012325:+6854 | Msa1351590:CDS |
CTTATAAGCACTTCCTTCTA+TGG | 0.269670 | tig0012325:-6764 | Msa1351590:intergenic |
TATTTATTTATTTCACAAAA+AGG | 0.269806 | tig0012325:-7865 | Msa1351590:intergenic |
GGCCTACCAATAAATATCTA+TGG | 0.270272 | tig0012325:+6920 | Msa1351590:CDS |
CATAGAAGGAAGTGCTTATA+AGG | 0.280018 | tig0012325:+6765 | Msa1351590:CDS |
GCTTACCCATAGATATTTAT+TGG | 0.283517 | tig0012325:-6926 | Msa1351590:intergenic |
TAATATGAATCAATTTAGTT+TGG | 0.296555 | tig0012325:+7973 | Msa1351590:three_prime_UTR |
AAGATATTCAACAACGAAAA+AGG | 0.302914 | tig0012325:-8152 | Msa1351590:intergenic |
TCTCCAACAGCAGGAATAAT+TGG | 0.308299 | tig0012325:-6847 | Msa1351590:intergenic |
CCTCCACCTGAGTAAGATTA+AGG | 0.321912 | tig0012325:+7824 | Msa1351590:exon |
GTGAAATAAATAAATAGTTA+TGG | 0.373929 | tig0012325:+7872 | Msa1351590:three_prime_UTR |
TGTAGATTGCTTCATCCAAA+TGG | 0.401693 | tig0012325:-7730 | Msa1351590:intergenic |
ATGGCTGATGTGGAAAGATA+TGG | 0.403552 | tig0012325:+8237 | Msa1351590:three_prime_UTR |
ACTATGCAGGCAACCCCATT+TGG | 0.413202 | tig0012325:+7715 | Msa1351590:CDS |
TTTGTTAGCACTTATCAGAT+TGG | 0.413995 | tig0012325:-6468 | Msa1351590:intergenic |
GATCTAGTAGTCGTAGATAA+AGG | 0.424602 | tig0012325:-8205 | Msa1351590:intergenic |
GTAGATTGCTTCATCCAAAT+GGG | 0.436253 | tig0012325:-7729 | Msa1351590:intergenic |
TTTGATACTGAAATTGTGTA+AGG | 0.436553 | tig0012325:+8061 | Msa1351590:three_prime_UTR |
GGTAAAAGAACCTCCATAGA+AGG | 0.443815 | tig0012325:+6751 | Msa1351590:CDS |
GGTTGTGAAGGGTGTAGACT+TGG | 0.444182 | tig0012325:+6591 | Msa1351590:CDS |
ATAGAATTTAACCTTGAGCT+TGG | 0.456530 | tig0012325:-6809 | Msa1351590:intergenic |
GAAGGACAAGGAGGTTGTGA+AGG | 0.458131 | tig0012325:+6579 | Msa1351590:CDS |
GTAAATTGCAATGCGTGTAT+TGG | 0.459376 | tig0012325:+8004 | Msa1351590:three_prime_UTR |
GATTATCAATATGCTCTCAT+TGG | 0.460982 | tig0012325:+6895 | Msa1351590:CDS |
TTGCCAATTATTCCTGCTGT+TGG | 0.461126 | tig0012325:+6844 | Msa1351590:CDS |
AAGGAGTTGTAACTTATTGT+TGG | 0.461791 | tig0012325:+8080 | Msa1351590:three_prime_UTR |
GCAGGAATAATTGGCAAGAA+TGG | 0.465330 | tig0012325:-6838 | Msa1351590:intergenic |
ATGAAGTGTATTATGTAATC+AGG | 0.473308 | tig0012325:+7902 | Msa1351590:three_prime_UTR |
CCTTAGCTTTCTCAACAAGC+TGG | 0.479647 | tig0012325:-7754 | Msa1351590:intergenic |
CACTCTACACATGGCTGATG+TGG | 0.483087 | tig0012325:+8227 | Msa1351590:three_prime_UTR |
TAAACAAACTATAGATAAGT+TGG | 0.483562 | tig0012325:+8036 | Msa1351590:three_prime_UTR |
TTCATGTTCTCAATGAGACT+TGG | 0.488210 | tig0012325:+6722 | Msa1351590:CDS |
GTTGAGAAAGCTAAGGAAGA+AGG | 0.488479 | tig0012325:+7761 | Msa1351590:CDS |
CGTAGATAAAGGATAAATCA+TGG | 0.492460 | tig0012325:-8194 | Msa1351590:intergenic |
TGATATTGTACAGCAAAGAT+TGG | 0.496672 | tig0012325:+8117 | Msa1351590:three_prime_UTR |
TGTAGACTTGGAGAGGTACA+TGG | 0.499697 | tig0012325:+6603 | Msa1351590:CDS |
CAGATTGGAGTAACTTTCCA+AGG | 0.509623 | tig0012325:-6453 | Msa1351590:intergenic |
CATATTGATAATCTTGATCA+AGG | 0.510400 | tig0012325:-6885 | Msa1351590:intergenic |
TGTCTCTCTACCTGAAATAG+AGG | 0.512104 | tig0012325:+6515 | Msa1351590:five_prime_UTR |
ATCCAGTAATCTCCAACAGC+AGG | 0.514048 | tig0012325:-6856 | Msa1351590:intergenic |
TATCAATATGCTCTCATTGG+TGG | 0.520368 | tig0012325:+6898 | Msa1351590:CDS |
ATCAATATGCTCTCATTGGT+GGG | 0.522349 | tig0012325:+6899 | Msa1351590:CDS |
AAGGACAAGGAGGTTGTGAA+GGG | 0.527129 | tig0012325:+6580 | Msa1351590:CDS |
ACCCATAGATATTTATTGGT+AGG | 0.528773 | tig0012325:-6922 | Msa1351590:intergenic |
GCCTACCAATAAATATCTAT+GGG | 0.548969 | tig0012325:+6921 | Msa1351590:CDS |
CAATATAATAGAACAGAACA+AGG | 0.549215 | tig0012325:-6492 | Msa1351590:intergenic |
TTGGTCCCTAGATACTATGC+AGG | 0.558593 | tig0012325:+7702 | Msa1351590:intron |
ACAAAACACAAAGAAAACCT+TGG | 0.558934 | tig0012325:+6436 | None:intergenic |
TGAGGACCTTAATCTTACTC+AGG | 0.562281 | tig0012325:-7830 | Msa1351590:intergenic |
ACATACACTCTCAACAGTGA+TGG | 0.564431 | tig0012325:+6694 | Msa1351590:CDS |
ATAAGCACTTCCTTCTATGG+AGG | 0.564915 | tig0012325:-6761 | Msa1351590:intergenic |
AACCTCCTTGTCCTTCCCTA+CGG | 0.565364 | tig0012325:-6572 | Msa1351590:intergenic |
CCTTAATCTTACTCAGGTGG+AGG | 0.569308 | tig0012325:-7824 | Msa1351590:intergenic |
ATCACTGTTGAGAGTGTATG+TGG | 0.583825 | tig0012325:-6692 | Msa1351590:intergenic |
ATGTGGAAAGATATGGGTAG+GGG | 0.588686 | tig0012325:+8244 | Msa1351590:three_prime_UTR |
GATGTGGAAAGATATGGGTA+GGG | 0.590937 | tig0012325:+8243 | Msa1351590:three_prime_UTR |
GGAATAATTGGCAAGAATGG+AGG | 0.591527 | tig0012325:-6835 | Msa1351590:intergenic |
ATAAATCATGGGATCCCCGC+TGG | 0.593383 | tig0012325:-8182 | Msa1351590:intergenic |
AATGGGAAACACCGTAGGGA+AGG | 0.597163 | tig0012325:+6561 | Msa1351590:exon |
GTAGATAAAGGATAAATCAT+GGG | 0.597389 | tig0012325:-8193 | Msa1351590:intergenic |
AAGTGATGAAGCCAAGCTCA+AGG | 0.599556 | tig0012325:+6798 | Msa1351590:CDS |
CATACACTCTCAACAGTGAT+GGG | 0.600831 | tig0012325:+6695 | Msa1351590:CDS |
GGACCTTAATCTTACTCAGG+TGG | 0.603353 | tig0012325:-7827 | Msa1351590:intergenic |
CTACTAGATCACTCTACACA+TGG | 0.604555 | tig0012325:+8218 | Msa1351590:three_prime_UTR |
TGGCTGATGTGGAAAGATAT+GGG | 0.613888 | tig0012325:+8238 | Msa1351590:three_prime_UTR |
TAGATTGCTTCATCCAAATG+GGG | 0.620741 | tig0012325:-7728 | Msa1351590:intergenic |
TGATGTGGAAAGATATGGGT+AGG | 0.621999 | tig0012325:+8242 | Msa1351590:three_prime_UTR |
ACTTGGAGAGGTACATGGGT+AGG | 0.635238 | tig0012325:+6608 | Msa1351590:CDS |
CCAGCTTGTTGAGAAAGCTA+AGG | 0.636813 | tig0012325:+7754 | Msa1351590:CDS |
CTCAATGAGACTTGGAATGG+TGG | 0.645948 | tig0012325:+6730 | Msa1351590:CDS |
GTAGACTTGGAGAGGTACAT+GGG | 0.653419 | tig0012325:+6604 | Msa1351590:CDS |
TGAAGGGTGTAGACTTGGAG+AGG | 0.655962 | tig0012325:+6596 | Msa1351590:CDS |
TGGAGAGGTACATGGGTAGG+TGG | 0.656685 | tig0012325:+6611 | Msa1351590:CDS |
TGTGGAAAGATATGGGTAGG+GGG | 0.680395 | tig0012325:+8245 | Msa1351590:three_prime_UTR |
TCAGGTGGAGGATCACTCTG+TGG | 0.704206 | tig0012325:-7812 | Msa1351590:intergenic |
CACCGTAGGGAAGGACAAGG+AGG | 0.708944 | tig0012325:+6570 | Msa1351590:CDS |
GTTCTCAATGAGACTTGGAA+TGG | 0.711280 | tig0012325:+6727 | Msa1351590:CDS |
AATATAATAGAACAGAACAA+GGG | 0.719173 | tig0012325:-6491 | Msa1351590:intergenic |
AAACACCGTAGGGAAGGACA+AGG | 0.745653 | tig0012325:+6567 | Msa1351590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTAAAAATTGTTTTATTTA+AGG | + | tig0012325:7316-7335 | Msa1351590:intron | 10.0% |
!!! | TTTTAAGTTTTAATTTTCTT+AGG | + | tig0012325:7568-7587 | Msa1351590:intron | 10.0% |
!! | TATTTATTTATTTCACAAAA+AGG | - | tig0012325:7868-7887 | Msa1351590:intergenic | 10.0% |
!!! | ACTAAAAATTGTTTTATTTA+AGG | + | tig0012325:7316-7335 | Msa1351590:intron | 10.0% |
!!! | TTTTAAGTTTTAATTTTCTT+AGG | + | tig0012325:7568-7587 | Msa1351590:intron | 10.0% |
!! | TATTTATTTATTTCACAAAA+AGG | - | tig0012325:7868-7887 | Msa1351590:intergenic | 10.0% |
!! | GTGAAATAAATAAATAGTTA+TGG | + | tig0012325:7872-7891 | Msa1351590:three_prime_UTR | 15.0% |
!!! | TAATTTCAAGTCAAAAATAA+AGG | + | tig0012325:7937-7956 | Msa1351590:three_prime_UTR | 15.0% |
!! | TAATATGAATCAATTTAGTT+TGG | + | tig0012325:7973-7992 | Msa1351590:three_prime_UTR | 15.0% |
!! | GTGAAATAAATAAATAGTTA+TGG | + | tig0012325:7872-7891 | Msa1351590:three_prime_UTR | 15.0% |
!!! | TAATTTCAAGTCAAAAATAA+AGG | + | tig0012325:7937-7956 | Msa1351590:three_prime_UTR | 15.0% |
!! | TAATATGAATCAATTTAGTT+TGG | + | tig0012325:7973-7992 | Msa1351590:three_prime_UTR | 15.0% |
!! | AATATAATAGAACAGAACAA+GGG | - | tig0012325:6494-6513 | None:intergenic | 20.0% |
!!! | TTGCTTTTTCTTGTTAAATT+AGG | + | tig0012325:6965-6984 | Msa1351590:intron | 20.0% |
!! | AAAATAATCCAAGTTATTGT+AGG | - | tig0012325:7684-7703 | Msa1351590:intergenic | 20.0% |
!!! | TACAATAACTTGGATTATTT+TGG | + | tig0012325:7683-7702 | Msa1351590:intron | 20.0% |
!! | TAAACAAACTATAGATAAGT+TGG | + | tig0012325:8036-8055 | Msa1351590:three_prime_UTR | 20.0% |
!! | AATATAATAGAACAGAACAA+GGG | - | tig0012325:6494-6513 | Msa1351590:intergenic | 20.0% |
!!! | TTGCTTTTTCTTGTTAAATT+AGG | + | tig0012325:6965-6984 | Msa1351590:intron | 20.0% |
!! | AAAATAATCCAAGTTATTGT+AGG | - | tig0012325:7684-7703 | Msa1351590:intergenic | 20.0% |
!!! | TACAATAACTTGGATTATTT+TGG | + | tig0012325:7683-7702 | Msa1351590:intron | 20.0% |
!! | TAAACAAACTATAGATAAGT+TGG | + | tig0012325:8036-8055 | Msa1351590:three_prime_UTR | 20.0% |
! | CAATATAATAGAACAGAACA+AGG | - | tig0012325:6495-6514 | None:intergenic | 25.0% |
! | ATAACATCCACAACAAAAAA+TGG | + | tig0012325:6543-6562 | Msa1351590:exon | 25.0% |
! | TAACATCCACAACAAAAAAT+GGG | + | tig0012325:6544-6563 | Msa1351590:exon | 25.0% |
!! | CATATTGATAATCTTGATCA+AGG | - | tig0012325:6888-6907 | Msa1351590:intergenic | 25.0% |
! | TCAAATATAATCACATGTGT+GGG | - | tig0012325:7013-7032 | Msa1351590:intergenic | 25.0% |
! | ATCAAATATAATCACATGTG+TGG | - | tig0012325:7014-7033 | Msa1351590:intergenic | 25.0% |
!! | TTGACTTCTAAGAAAAATTG+TGG | + | tig0012325:7143-7162 | Msa1351590:intron | 25.0% |
!! | ATTTTTCTTAGACACAATTG+TGG | - | tig0012325:7171-7190 | Msa1351590:intergenic | 25.0% |
! | ATGAAGTGTATTATGTAATC+AGG | + | tig0012325:7902-7921 | Msa1351590:three_prime_UTR | 25.0% |
!! | ATTGATTCATATTAGAGTTC+TGG | - | tig0012325:7967-7986 | Msa1351590:intergenic | 25.0% |
! | TTTGATACTGAAATTGTGTA+AGG | + | tig0012325:8061-8080 | Msa1351590:three_prime_UTR | 25.0% |
! | AAGATATTCAACAACGAAAA+AGG | - | tig0012325:8155-8174 | Msa1351590:intergenic | 25.0% |
! | GTAGATAAAGGATAAATCAT+GGG | - | tig0012325:8196-8215 | Msa1351590:intergenic | 25.0% |
!!! | TTCCATTCATATCATTTTTG+TGG | + | tig0012325:8270-8289 | Msa1351590:three_prime_UTR | 25.0% |
! | TTCCACAAAAATGATATGAA+TGG | - | tig0012325:8275-8294 | Msa1351590:intergenic | 25.0% |
!!! | TTCATATCATTTTTGTGGAA+TGG | + | tig0012325:8275-8294 | Msa1351590:three_prime_UTR | 25.0% |
!! | ATTTTTGTGGAATGGTTTTT+CGG | + | tig0012325:8283-8302 | Msa1351590:three_prime_UTR | 25.0% |
! | CAATATAATAGAACAGAACA+AGG | - | tig0012325:6495-6514 | Msa1351590:intergenic | 25.0% |
! | ATAACATCCACAACAAAAAA+TGG | + | tig0012325:6543-6562 | Msa1351590:exon | 25.0% |
! | TAACATCCACAACAAAAAAT+GGG | + | tig0012325:6544-6563 | Msa1351590:exon | 25.0% |
!! | CATATTGATAATCTTGATCA+AGG | - | tig0012325:6888-6907 | Msa1351590:intergenic | 25.0% |
! | TCAAATATAATCACATGTGT+GGG | - | tig0012325:7013-7032 | Msa1351590:intergenic | 25.0% |
! | ATCAAATATAATCACATGTG+TGG | - | tig0012325:7014-7033 | Msa1351590:intergenic | 25.0% |
!! | TTGACTTCTAAGAAAAATTG+TGG | + | tig0012325:7143-7162 | Msa1351590:intron | 25.0% |
!! | ATTTTTCTTAGACACAATTG+TGG | - | tig0012325:7171-7190 | Msa1351590:intergenic | 25.0% |
! | ATGAAGTGTATTATGTAATC+AGG | + | tig0012325:7902-7921 | Msa1351590:three_prime_UTR | 25.0% |
!! | ATTGATTCATATTAGAGTTC+TGG | - | tig0012325:7967-7986 | Msa1351590:intergenic | 25.0% |
! | TTTGATACTGAAATTGTGTA+AGG | + | tig0012325:8061-8080 | Msa1351590:three_prime_UTR | 25.0% |
! | AAGATATTCAACAACGAAAA+AGG | - | tig0012325:8155-8174 | Msa1351590:intergenic | 25.0% |
! | GTAGATAAAGGATAAATCAT+GGG | - | tig0012325:8196-8215 | Msa1351590:intergenic | 25.0% |
!!! | TTCCATTCATATCATTTTTG+TGG | + | tig0012325:8270-8289 | Msa1351590:three_prime_UTR | 25.0% |
! | TTCCACAAAAATGATATGAA+TGG | - | tig0012325:8275-8294 | Msa1351590:intergenic | 25.0% |
!!! | TTCATATCATTTTTGTGGAA+TGG | + | tig0012325:8275-8294 | Msa1351590:three_prime_UTR | 25.0% |
!! | ATTTTTGTGGAATGGTTTTT+CGG | + | tig0012325:8283-8302 | Msa1351590:three_prime_UTR | 25.0% |
TTTGTTAGCACTTATCAGAT+TGG | - | tig0012325:6471-6490 | None:intergenic | 30.0% | |
ATAGAATTTAACCTTGAGCT+TGG | - | tig0012325:6812-6831 | Msa1351590:intergenic | 30.0% | |
GATTATCAATATGCTCTCAT+TGG | + | tig0012325:6895-6914 | Msa1351590:CDS | 30.0% | |
GCCTACCAATAAATATCTAT+GGG | + | tig0012325:6921-6940 | Msa1351590:CDS | 30.0% | |
ACCCATAGATATTTATTGGT+AGG | - | tig0012325:6925-6944 | Msa1351590:intergenic | 30.0% | |
GCTTACCCATAGATATTTAT+TGG | - | tig0012325:6929-6948 | Msa1351590:intergenic | 30.0% | |
AAAAAGCAACGTTAGAGATA+GGG | - | tig0012325:6954-6973 | Msa1351590:intergenic | 30.0% | |
TCTCTCATATGAAAAATGTC+AGG | - | tig0012325:7482-7501 | Msa1351590:intergenic | 30.0% | |
CTTTGACTCATTATAAGAGA+TGG | + | tig0012325:7515-7534 | Msa1351590:intron | 30.0% | |
GAAAGAGAGAAGATTCAATT+TGG | - | tig0012325:7626-7645 | Msa1351590:intergenic | 30.0% | |
TAATCCAAGTTATTGTAGGA+AGG | - | tig0012325:7680-7699 | Msa1351590:intergenic | 30.0% | |
AAGGAGTTGTAACTTATTGT+TGG | + | tig0012325:8080-8099 | Msa1351590:three_prime_UTR | 30.0% | |
TGATATTGTACAGCAAAGAT+TGG | + | tig0012325:8117-8136 | Msa1351590:three_prime_UTR | 30.0% | |
CGTAGATAAAGGATAAATCA+TGG | - | tig0012325:8197-8216 | Msa1351590:intergenic | 30.0% | |
TTTGTTAGCACTTATCAGAT+TGG | - | tig0012325:6471-6490 | Msa1351590:intergenic | 30.0% | |
ATAGAATTTAACCTTGAGCT+TGG | - | tig0012325:6812-6831 | Msa1351590:intergenic | 30.0% | |
GATTATCAATATGCTCTCAT+TGG | + | tig0012325:6895-6914 | Msa1351590:CDS | 30.0% | |
GCCTACCAATAAATATCTAT+GGG | + | tig0012325:6921-6940 | Msa1351590:CDS | 30.0% | |
ACCCATAGATATTTATTGGT+AGG | - | tig0012325:6925-6944 | Msa1351590:intergenic | 30.0% | |
GCTTACCCATAGATATTTAT+TGG | - | tig0012325:6929-6948 | Msa1351590:intergenic | 30.0% | |
AAAAAGCAACGTTAGAGATA+GGG | - | tig0012325:6954-6973 | Msa1351590:intergenic | 30.0% | |
TCTCTCATATGAAAAATGTC+AGG | - | tig0012325:7482-7501 | Msa1351590:intergenic | 30.0% | |
CTTTGACTCATTATAAGAGA+TGG | + | tig0012325:7515-7534 | Msa1351590:intron | 30.0% | |
GAAAGAGAGAAGATTCAATT+TGG | - | tig0012325:7626-7645 | Msa1351590:intergenic | 30.0% | |
TAATCCAAGTTATTGTAGGA+AGG | - | tig0012325:7680-7699 | Msa1351590:intergenic | 30.0% | |
AAGGAGTTGTAACTTATTGT+TGG | + | tig0012325:8080-8099 | Msa1351590:three_prime_UTR | 30.0% | |
TGATATTGTACAGCAAAGAT+TGG | + | tig0012325:8117-8136 | Msa1351590:three_prime_UTR | 30.0% | |
CGTAGATAAAGGATAAATCA+TGG | - | tig0012325:8197-8216 | Msa1351590:intergenic | 30.0% | |
GTTATTGCTTCCTCTATTTC+AGG | - | tig0012325:6528-6547 | Msa1351590:intergenic | 35.0% | |
!!! | GTGTTTCCCATTTTTTGTTG+TGG | - | tig0012325:6553-6572 | Msa1351590:intergenic | 35.0% |
AAAAAATGGGAAACACCGTA+GGG | + | tig0012325:6557-6576 | Msa1351590:exon | 35.0% | |
! | TTTTGGGCTGAAAGAATGAA+GGG | - | tig0012325:6654-6673 | Msa1351590:intergenic | 35.0% |
!! | TTTTTGGGCTGAAAGAATGA+AGG | - | tig0012325:6655-6674 | Msa1351590:intergenic | 35.0% |
TCATTCTTTCAGCCCAAAAA+TGG | + | tig0012325:6655-6674 | Msa1351590:CDS | 35.0% | |
!! | CTTGTGTTCTCTCCATTTTT+GGG | - | tig0012325:6670-6689 | Msa1351590:intergenic | 35.0% |
! | TCTTGTGTTCTCTCCATTTT+TGG | - | tig0012325:6671-6690 | Msa1351590:intergenic | 35.0% |
TTCATGTTCTCAATGAGACT+TGG | + | tig0012325:6722-6741 | Msa1351590:CDS | 35.0% | |
CTTATAAGCACTTCCTTCTA+TGG | - | tig0012325:6767-6786 | Msa1351590:intergenic | 35.0% | |
!! | CATAGAAGGAAGTGCTTATA+AGG | + | tig0012325:6765-6784 | Msa1351590:CDS | 35.0% |
TATCAATATGCTCTCATTGG+TGG | + | tig0012325:6898-6917 | Msa1351590:CDS | 35.0% | |
ATCAATATGCTCTCATTGGT+GGG | + | tig0012325:6899-6918 | Msa1351590:CDS | 35.0% | |
GGCCTACCAATAAATATCTA+TGG | + | tig0012325:6920-6939 | Msa1351590:CDS | 35.0% | |
GAAAAAGCAACGTTAGAGAT+AGG | - | tig0012325:6955-6974 | Msa1351590:intergenic | 35.0% | |
! | AGAGCAAGAAAGATTAGTTG+TGG | + | tig0012325:7118-7137 | Msa1351590:intron | 35.0% |
CAATCATAGCTAGATTGTCT+TGG | - | tig0012325:7231-7250 | Msa1351590:intergenic | 35.0% | |
AAATTGAGAGTGACCACATT+GGG | - | tig0012325:7411-7430 | Msa1351590:intergenic | 35.0% | |
AAAATTGAGAGTGACCACAT+TGG | - | tig0012325:7412-7431 | Msa1351590:intergenic | 35.0% | |
GAACAACACGAAAACTATGA+AGG | + | tig0012325:7599-7618 | Msa1351590:intron | 35.0% | |
TAGATTGCTTCATCCAAATG+GGG | - | tig0012325:7731-7750 | Msa1351590:intergenic | 35.0% | |
GTAGATTGCTTCATCCAAAT+GGG | - | tig0012325:7732-7751 | Msa1351590:intergenic | 35.0% | |
TGTAGATTGCTTCATCCAAA+TGG | - | tig0012325:7733-7752 | Msa1351590:intergenic | 35.0% | |
!!! | AAAAGGCATTTTGTGTCTTG+AGG | - | tig0012325:7851-7870 | Msa1351590:intergenic | 35.0% |
GTAAATTGCAATGCGTGTAT+TGG | + | tig0012325:8004-8023 | Msa1351590:three_prime_UTR | 35.0% | |
GATCTAGTAGTCGTAGATAA+AGG | - | tig0012325:8208-8227 | Msa1351590:intergenic | 35.0% | |
GTTATTGCTTCCTCTATTTC+AGG | - | tig0012325:6528-6547 | Msa1351590:intergenic | 35.0% | |
!!! | GTGTTTCCCATTTTTTGTTG+TGG | - | tig0012325:6553-6572 | Msa1351590:intergenic | 35.0% |
AAAAAATGGGAAACACCGTA+GGG | + | tig0012325:6557-6576 | Msa1351590:exon | 35.0% | |
! | TTTTGGGCTGAAAGAATGAA+GGG | - | tig0012325:6654-6673 | Msa1351590:intergenic | 35.0% |
!! | TTTTTGGGCTGAAAGAATGA+AGG | - | tig0012325:6655-6674 | Msa1351590:intergenic | 35.0% |
TCATTCTTTCAGCCCAAAAA+TGG | + | tig0012325:6655-6674 | Msa1351590:CDS | 35.0% | |
!! | CTTGTGTTCTCTCCATTTTT+GGG | - | tig0012325:6670-6689 | Msa1351590:intergenic | 35.0% |
! | TCTTGTGTTCTCTCCATTTT+TGG | - | tig0012325:6671-6690 | Msa1351590:intergenic | 35.0% |
TTCATGTTCTCAATGAGACT+TGG | + | tig0012325:6722-6741 | Msa1351590:CDS | 35.0% | |
CTTATAAGCACTTCCTTCTA+TGG | - | tig0012325:6767-6786 | Msa1351590:intergenic | 35.0% | |
!! | CATAGAAGGAAGTGCTTATA+AGG | + | tig0012325:6765-6784 | Msa1351590:CDS | 35.0% |
TATCAATATGCTCTCATTGG+TGG | + | tig0012325:6898-6917 | Msa1351590:CDS | 35.0% | |
ATCAATATGCTCTCATTGGT+GGG | + | tig0012325:6899-6918 | Msa1351590:CDS | 35.0% | |
GGCCTACCAATAAATATCTA+TGG | + | tig0012325:6920-6939 | Msa1351590:CDS | 35.0% | |
GAAAAAGCAACGTTAGAGAT+AGG | - | tig0012325:6955-6974 | Msa1351590:intergenic | 35.0% | |
! | AGAGCAAGAAAGATTAGTTG+TGG | + | tig0012325:7118-7137 | Msa1351590:intron | 35.0% |
CAATCATAGCTAGATTGTCT+TGG | - | tig0012325:7231-7250 | Msa1351590:intergenic | 35.0% | |
AAATTGAGAGTGACCACATT+GGG | - | tig0012325:7411-7430 | Msa1351590:intergenic | 35.0% | |
AAAATTGAGAGTGACCACAT+TGG | - | tig0012325:7412-7431 | Msa1351590:intergenic | 35.0% | |
GAACAACACGAAAACTATGA+AGG | + | tig0012325:7599-7618 | Msa1351590:intron | 35.0% | |
TAGATTGCTTCATCCAAATG+GGG | - | tig0012325:7731-7750 | Msa1351590:intergenic | 35.0% | |
GTAGATTGCTTCATCCAAAT+GGG | - | tig0012325:7732-7751 | Msa1351590:intergenic | 35.0% | |
TGTAGATTGCTTCATCCAAA+TGG | - | tig0012325:7733-7752 | Msa1351590:intergenic | 35.0% | |
!!! | AAAAGGCATTTTGTGTCTTG+AGG | - | tig0012325:7851-7870 | Msa1351590:intergenic | 35.0% |
GTAAATTGCAATGCGTGTAT+TGG | + | tig0012325:8004-8023 | Msa1351590:three_prime_UTR | 35.0% | |
GATCTAGTAGTCGTAGATAA+AGG | - | tig0012325:8208-8227 | Msa1351590:intergenic | 35.0% | |
CAGATTGGAGTAACTTTCCA+AGG | - | tig0012325:6456-6475 | None:intergenic | 40.0% | |
TGTCTCTCTACCTGAAATAG+AGG | + | tig0012325:6515-6534 | Msa1351590:five_prime_UTR | 40.0% | |
CAAAAAATGGGAAACACCGT+AGG | + | tig0012325:6556-6575 | Msa1351590:exon | 40.0% | |
! | ATCACTGTTGAGAGTGTATG+TGG | - | tig0012325:6695-6714 | Msa1351590:intergenic | 40.0% |
ACATACACTCTCAACAGTGA+TGG | + | tig0012325:6694-6713 | Msa1351590:CDS | 40.0% | |
CATACACTCTCAACAGTGAT+GGG | + | tig0012325:6695-6714 | Msa1351590:CDS | 40.0% | |
GTTCTCAATGAGACTTGGAA+TGG | + | tig0012325:6727-6746 | Msa1351590:CDS | 40.0% | |
GGTAAAAGAACCTCCATAGA+AGG | + | tig0012325:6751-6770 | Msa1351590:CDS | 40.0% | |
ATAAGCACTTCCTTCTATGG+AGG | - | tig0012325:6764-6783 | Msa1351590:intergenic | 40.0% | |
!! | AGCTTGGCTTCATCACTTTT+GGG | - | tig0012325:6796-6815 | Msa1351590:intergenic | 40.0% |
GGAATAATTGGCAAGAATGG+AGG | - | tig0012325:6838-6857 | Msa1351590:intergenic | 40.0% | |
GCAGGAATAATTGGCAAGAA+TGG | - | tig0012325:6841-6860 | Msa1351590:intergenic | 40.0% | |
TTGCCAATTATTCCTGCTGT+TGG | + | tig0012325:6844-6863 | Msa1351590:CDS | 40.0% | |
TCTCCAACAGCAGGAATAAT+TGG | - | tig0012325:6850-6869 | Msa1351590:intergenic | 40.0% | |
ATGAAGCTATGACACAGACA+CGG | - | tig0012325:7098-7117 | Msa1351590:intergenic | 40.0% | |
! | GGTCACTCTCAATTTTCTTG+CGG | + | tig0012325:7416-7435 | Msa1351590:intron | 40.0% |
CGTTCCTTCCTACAATAACT+TGG | + | tig0012325:7673-7692 | Msa1351590:intron | 40.0% | |
GTTGAGAAAGCTAAGGAAGA+AGG | + | tig0012325:7761-7780 | Msa1351590:CDS | 40.0% | |
TGAGGACCTTAATCTTACTC+AGG | - | tig0012325:7833-7852 | Msa1351590:intergenic | 40.0% | |
! | GAATATCTTTTGCTGACCAG+CGG | + | tig0012325:8166-8185 | Msa1351590:three_prime_UTR | 40.0% |
! | AATATCTTTTGCTGACCAGC+GGG | + | tig0012325:8167-8186 | Msa1351590:three_prime_UTR | 40.0% |
CTACTAGATCACTCTACACA+TGG | + | tig0012325:8218-8237 | Msa1351590:three_prime_UTR | 40.0% | |
ATGGCTGATGTGGAAAGATA+TGG | + | tig0012325:8237-8256 | Msa1351590:three_prime_UTR | 40.0% | |
TGGCTGATGTGGAAAGATAT+GGG | + | tig0012325:8238-8257 | Msa1351590:three_prime_UTR | 40.0% | |
TGATGTGGAAAGATATGGGT+AGG | + | tig0012325:8242-8261 | Msa1351590:three_prime_UTR | 40.0% | |
GATGTGGAAAGATATGGGTA+GGG | + | tig0012325:8243-8262 | Msa1351590:three_prime_UTR | 40.0% | |
ATGTGGAAAGATATGGGTAG+GGG | + | tig0012325:8244-8263 | Msa1351590:three_prime_UTR | 40.0% | |
CAGATTGGAGTAACTTTCCA+AGG | - | tig0012325:6456-6475 | Msa1351590:intergenic | 40.0% | |
TGTCTCTCTACCTGAAATAG+AGG | + | tig0012325:6515-6534 | Msa1351590:five_prime_UTR | 40.0% | |
CAAAAAATGGGAAACACCGT+AGG | + | tig0012325:6556-6575 | Msa1351590:exon | 40.0% | |
! | ATCACTGTTGAGAGTGTATG+TGG | - | tig0012325:6695-6714 | Msa1351590:intergenic | 40.0% |
ACATACACTCTCAACAGTGA+TGG | + | tig0012325:6694-6713 | Msa1351590:CDS | 40.0% | |
CATACACTCTCAACAGTGAT+GGG | + | tig0012325:6695-6714 | Msa1351590:CDS | 40.0% | |
GTTCTCAATGAGACTTGGAA+TGG | + | tig0012325:6727-6746 | Msa1351590:CDS | 40.0% | |
GGTAAAAGAACCTCCATAGA+AGG | + | tig0012325:6751-6770 | Msa1351590:CDS | 40.0% | |
ATAAGCACTTCCTTCTATGG+AGG | - | tig0012325:6764-6783 | Msa1351590:intergenic | 40.0% | |
!! | AGCTTGGCTTCATCACTTTT+GGG | - | tig0012325:6796-6815 | Msa1351590:intergenic | 40.0% |
GGAATAATTGGCAAGAATGG+AGG | - | tig0012325:6838-6857 | Msa1351590:intergenic | 40.0% | |
GCAGGAATAATTGGCAAGAA+TGG | - | tig0012325:6841-6860 | Msa1351590:intergenic | 40.0% | |
TTGCCAATTATTCCTGCTGT+TGG | + | tig0012325:6844-6863 | Msa1351590:CDS | 40.0% | |
TCTCCAACAGCAGGAATAAT+TGG | - | tig0012325:6850-6869 | Msa1351590:intergenic | 40.0% | |
ATGAAGCTATGACACAGACA+CGG | - | tig0012325:7098-7117 | Msa1351590:intergenic | 40.0% | |
! | GGTCACTCTCAATTTTCTTG+CGG | + | tig0012325:7416-7435 | Msa1351590:intron | 40.0% |
CGTTCCTTCCTACAATAACT+TGG | + | tig0012325:7673-7692 | Msa1351590:intron | 40.0% | |
GTTGAGAAAGCTAAGGAAGA+AGG | + | tig0012325:7761-7780 | Msa1351590:CDS | 40.0% | |
TGAGGACCTTAATCTTACTC+AGG | - | tig0012325:7833-7852 | Msa1351590:intergenic | 40.0% | |
! | GAATATCTTTTGCTGACCAG+CGG | + | tig0012325:8166-8185 | Msa1351590:three_prime_UTR | 40.0% |
! | AATATCTTTTGCTGACCAGC+GGG | + | tig0012325:8167-8186 | Msa1351590:three_prime_UTR | 40.0% |
CTACTAGATCACTCTACACA+TGG | + | tig0012325:8218-8237 | Msa1351590:three_prime_UTR | 40.0% | |
ATGGCTGATGTGGAAAGATA+TGG | + | tig0012325:8237-8256 | Msa1351590:three_prime_UTR | 40.0% | |
TGGCTGATGTGGAAAGATAT+GGG | + | tig0012325:8238-8257 | Msa1351590:three_prime_UTR | 40.0% | |
TGATGTGGAAAGATATGGGT+AGG | + | tig0012325:8242-8261 | Msa1351590:three_prime_UTR | 40.0% | |
GATGTGGAAAGATATGGGTA+GGG | + | tig0012325:8243-8262 | Msa1351590:three_prime_UTR | 40.0% | |
ATGTGGAAAGATATGGGTAG+GGG | + | tig0012325:8244-8263 | Msa1351590:three_prime_UTR | 40.0% | |
AAGGACAAGGAGGTTGTGAA+GGG | + | tig0012325:6580-6599 | Msa1351590:CDS | 45.0% | |
! | TGTAGACTTGGAGAGGTACA+TGG | + | tig0012325:6603-6622 | Msa1351590:CDS | 45.0% |
! | GTAGACTTGGAGAGGTACAT+GGG | + | tig0012325:6604-6623 | Msa1351590:CDS | 45.0% |
CTCAATGAGACTTGGAATGG+TGG | + | tig0012325:6730-6749 | Msa1351590:CDS | 45.0% | |
!! | GCTTGGCTTCATCACTTTTG+GGG | - | tig0012325:6795-6814 | Msa1351590:intergenic | 45.0% |
! | GAGCTTGGCTTCATCACTTT+TGG | - | tig0012325:6797-6816 | Msa1351590:intergenic | 45.0% |
AAGTGATGAAGCCAAGCTCA+AGG | + | tig0012325:6798-6817 | Msa1351590:CDS | 45.0% | |
TTCCTGCTGTTGGAGATTAC+TGG | + | tig0012325:6854-6873 | Msa1351590:CDS | 45.0% | |
ATCCAGTAATCTCCAACAGC+AGG | - | tig0012325:6859-6878 | Msa1351590:intergenic | 45.0% | |
CACATGTGTGGGATGTAACT+TGG | - | tig0012325:7002-7021 | Msa1351590:intergenic | 45.0% | |
TTGGTCCCTAGATACTATGC+AGG | + | tig0012325:7702-7721 | Msa1351590:intron | 45.0% | |
GGTTGCCTGCATAGTATCTA+GGG | - | tig0012325:7710-7729 | Msa1351590:intergenic | 45.0% | |
! | CCTTAGCTTTCTCAACAAGC+TGG | - | tig0012325:7757-7776 | Msa1351590:intergenic | 45.0% |
!! | CCAGCTTGTTGAGAAAGCTA+AGG | + | tig0012325:7754-7773 | Msa1351590:CDS | 45.0% |
CCTTAATCTTACTCAGGTGG+AGG | - | tig0012325:7827-7846 | Msa1351590:intergenic | 45.0% | |
CCTCCACCTGAGTAAGATTA+AGG | + | tig0012325:7824-7843 | Msa1351590:exon | 45.0% | |
GGACCTTAATCTTACTCAGG+TGG | - | tig0012325:7830-7849 | Msa1351590:intergenic | 45.0% | |
! | ATATCTTTTGCTGACCAGCG+GGG | + | tig0012325:8168-8187 | Msa1351590:three_prime_UTR | 45.0% |
TGTGGAAAGATATGGGTAGG+GGG | + | tig0012325:8245-8264 | Msa1351590:three_prime_UTR | 45.0% | |
AAGGACAAGGAGGTTGTGAA+GGG | + | tig0012325:6580-6599 | Msa1351590:CDS | 45.0% | |
! | TGTAGACTTGGAGAGGTACA+TGG | + | tig0012325:6603-6622 | Msa1351590:CDS | 45.0% |
! | GTAGACTTGGAGAGGTACAT+GGG | + | tig0012325:6604-6623 | Msa1351590:CDS | 45.0% |
CTCAATGAGACTTGGAATGG+TGG | + | tig0012325:6730-6749 | Msa1351590:CDS | 45.0% | |
!! | GCTTGGCTTCATCACTTTTG+GGG | - | tig0012325:6795-6814 | Msa1351590:intergenic | 45.0% |
! | GAGCTTGGCTTCATCACTTT+TGG | - | tig0012325:6797-6816 | Msa1351590:intergenic | 45.0% |
AAGTGATGAAGCCAAGCTCA+AGG | + | tig0012325:6798-6817 | Msa1351590:CDS | 45.0% | |
TTCCTGCTGTTGGAGATTAC+TGG | + | tig0012325:6854-6873 | Msa1351590:CDS | 45.0% | |
ATCCAGTAATCTCCAACAGC+AGG | - | tig0012325:6859-6878 | Msa1351590:intergenic | 45.0% | |
CACATGTGTGGGATGTAACT+TGG | - | tig0012325:7002-7021 | Msa1351590:intergenic | 45.0% | |
TTGGTCCCTAGATACTATGC+AGG | + | tig0012325:7702-7721 | Msa1351590:intron | 45.0% | |
GGTTGCCTGCATAGTATCTA+GGG | - | tig0012325:7710-7729 | Msa1351590:intergenic | 45.0% | |
! | CCTTAGCTTTCTCAACAAGC+TGG | - | tig0012325:7757-7776 | Msa1351590:intergenic | 45.0% |
!! | CCAGCTTGTTGAGAAAGCTA+AGG | + | tig0012325:7754-7773 | Msa1351590:CDS | 45.0% |
CCTTAATCTTACTCAGGTGG+AGG | - | tig0012325:7827-7846 | Msa1351590:intergenic | 45.0% | |
CCTCCACCTGAGTAAGATTA+AGG | + | tig0012325:7824-7843 | Msa1351590:exon | 45.0% | |
GGACCTTAATCTTACTCAGG+TGG | - | tig0012325:7830-7849 | Msa1351590:intergenic | 45.0% | |
! | ATATCTTTTGCTGACCAGCG+GGG | + | tig0012325:8168-8187 | Msa1351590:three_prime_UTR | 45.0% |
TGTGGAAAGATATGGGTAGG+GGG | + | tig0012325:8245-8264 | Msa1351590:three_prime_UTR | 45.0% | |
AATGGGAAACACCGTAGGGA+AGG | + | tig0012325:6561-6580 | Msa1351590:exon | 50.0% | |
AAACACCGTAGGGAAGGACA+AGG | + | tig0012325:6567-6586 | Msa1351590:CDS | 50.0% | |
AACCTCCTTGTCCTTCCCTA+CGG | - | tig0012325:6575-6594 | Msa1351590:intergenic | 50.0% | |
GAAGGACAAGGAGGTTGTGA+AGG | + | tig0012325:6579-6598 | Msa1351590:CDS | 50.0% | |
! | GGTTGTGAAGGGTGTAGACT+TGG | + | tig0012325:6591-6610 | Msa1351590:CDS | 50.0% |
! | TGAAGGGTGTAGACTTGGAG+AGG | + | tig0012325:6596-6615 | Msa1351590:CDS | 50.0% |
! | ACTTGGAGAGGTACATGGGT+AGG | + | tig0012325:6608-6627 | Msa1351590:CDS | 50.0% |
TAGAGAGTGAACGCCCAATG+TGG | + | tig0012325:7395-7414 | Msa1351590:intron | 50.0% | |
GGGTTGCCTGCATAGTATCT+AGG | - | tig0012325:7711-7730 | Msa1351590:intergenic | 50.0% | |
ACTATGCAGGCAACCCCATT+TGG | + | tig0012325:7715-7734 | Msa1351590:CDS | 50.0% | |
ATAAATCATGGGATCCCCGC+TGG | - | tig0012325:8185-8204 | Msa1351590:intergenic | 50.0% | |
CACTCTACACATGGCTGATG+TGG | + | tig0012325:8227-8246 | Msa1351590:three_prime_UTR | 50.0% | |
AATGGGAAACACCGTAGGGA+AGG | + | tig0012325:6561-6580 | Msa1351590:exon | 50.0% | |
AAACACCGTAGGGAAGGACA+AGG | + | tig0012325:6567-6586 | Msa1351590:CDS | 50.0% | |
AACCTCCTTGTCCTTCCCTA+CGG | - | tig0012325:6575-6594 | Msa1351590:intergenic | 50.0% | |
GAAGGACAAGGAGGTTGTGA+AGG | + | tig0012325:6579-6598 | Msa1351590:CDS | 50.0% | |
! | GGTTGTGAAGGGTGTAGACT+TGG | + | tig0012325:6591-6610 | Msa1351590:CDS | 50.0% |
! | TGAAGGGTGTAGACTTGGAG+AGG | + | tig0012325:6596-6615 | Msa1351590:CDS | 50.0% |
! | ACTTGGAGAGGTACATGGGT+AGG | + | tig0012325:6608-6627 | Msa1351590:CDS | 50.0% |
TAGAGAGTGAACGCCCAATG+TGG | + | tig0012325:7395-7414 | Msa1351590:intron | 50.0% | |
GGGTTGCCTGCATAGTATCT+AGG | - | tig0012325:7711-7730 | Msa1351590:intergenic | 50.0% | |
ACTATGCAGGCAACCCCATT+TGG | + | tig0012325:7715-7734 | Msa1351590:CDS | 50.0% | |
ATAAATCATGGGATCCCCGC+TGG | - | tig0012325:8185-8204 | Msa1351590:intergenic | 50.0% | |
CACTCTACACATGGCTGATG+TGG | + | tig0012325:8227-8246 | Msa1351590:three_prime_UTR | 50.0% | |
! | TGGAGAGGTACATGGGTAGG+TGG | + | tig0012325:6611-6630 | Msa1351590:CDS | 55.0% |
TCAGGTGGAGGATCACTCTG+TGG | - | tig0012325:7815-7834 | Msa1351590:intergenic | 55.0% | |
! | TGGAGAGGTACATGGGTAGG+TGG | + | tig0012325:6611-6630 | Msa1351590:CDS | 55.0% |
TCAGGTGGAGGATCACTCTG+TGG | - | tig0012325:7815-7834 | Msa1351590:intergenic | 55.0% | |
CACCGTAGGGAAGGACAAGG+AGG | + | tig0012325:6570-6589 | Msa1351590:CDS | 60.0% | |
CACCGTAGGGAAGGACAAGG+AGG | + | tig0012325:6570-6589 | Msa1351590:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0012325 | gene | 6442 | 8347 | 6442 | ID=Msa1351590;Name=Msa1351590 |
tig0012325 | mRNA | 6442 | 8347 | 6442 | ID=Msa1351590-mRNA-1;Parent=Msa1351590;Name=Msa1351590-mRNA-1;_AED=0.29;_eAED=0.29;_QI=120|1|1|1|1|1|2|509|168 |
tig0012325 | exon | 6442 | 6942 | 6442 | ID=Msa1351590-mRNA-1:exon:7786;Parent=Msa1351590-mRNA-1 |
tig0012325 | exon | 7713 | 8347 | 7713 | ID=Msa1351590-mRNA-1:exon:7787;Parent=Msa1351590-mRNA-1 |
tig0012325 | five_prime_UTR | 6442 | 6561 | 6442 | ID=Msa1351590-mRNA-1:five_prime_utr;Parent=Msa1351590-mRNA-1 |
tig0012325 | CDS | 6562 | 6942 | 6562 | ID=Msa1351590-mRNA-1:cds;Parent=Msa1351590-mRNA-1 |
tig0012325 | CDS | 7713 | 7838 | 7713 | ID=Msa1351590-mRNA-1:cds;Parent=Msa1351590-mRNA-1 |
tig0012325 | three_prime_UTR | 7839 | 8347 | 7839 | ID=Msa1351590-mRNA-1:three_prime_utr;Parent=Msa1351590-mRNA-1 |
Gene Sequence |
Protein sequence |