AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351590 MtrunA17_Chr4g0074351 97.024 168 5 0 1 168 1 168 9.96e-122 340
Msa1351590 MtrunA17_Chr4g0074361 81.761 159 29 0 10 168 32 190 6.45e-96 275
Msa1351590 MtrunA17_Chr4g0074341 77.439 164 37 0 5 168 103 266 2.01e-94 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351590 AT5G58070.1 76.970 165 38 0 4 168 2 166 1.19e-92 267

Find 82 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTGGCTTCATCACTTT+TGG 0.137021 tig0012325:-6794 Msa1351590:intergenic
GTTATTGCTTCCTCTATTTC+AGG 0.192532 tig0012325:-6525 Msa1351590:intergenic
ATTGATTCATATTAGAGTTC+TGG 0.264894 tig0012325:-7964 Msa1351590:intergenic
TTCCTGCTGTTGGAGATTAC+TGG 0.269337 tig0012325:+6854 Msa1351590:CDS
CTTATAAGCACTTCCTTCTA+TGG 0.269670 tig0012325:-6764 Msa1351590:intergenic
TATTTATTTATTTCACAAAA+AGG 0.269806 tig0012325:-7865 Msa1351590:intergenic
GGCCTACCAATAAATATCTA+TGG 0.270272 tig0012325:+6920 Msa1351590:CDS
CATAGAAGGAAGTGCTTATA+AGG 0.280018 tig0012325:+6765 Msa1351590:CDS
GCTTACCCATAGATATTTAT+TGG 0.283517 tig0012325:-6926 Msa1351590:intergenic
TAATATGAATCAATTTAGTT+TGG 0.296555 tig0012325:+7973 Msa1351590:three_prime_UTR
AAGATATTCAACAACGAAAA+AGG 0.302914 tig0012325:-8152 Msa1351590:intergenic
TCTCCAACAGCAGGAATAAT+TGG 0.308299 tig0012325:-6847 Msa1351590:intergenic
CCTCCACCTGAGTAAGATTA+AGG 0.321912 tig0012325:+7824 Msa1351590:exon
GTGAAATAAATAAATAGTTA+TGG 0.373929 tig0012325:+7872 Msa1351590:three_prime_UTR
TGTAGATTGCTTCATCCAAA+TGG 0.401693 tig0012325:-7730 Msa1351590:intergenic
ATGGCTGATGTGGAAAGATA+TGG 0.403552 tig0012325:+8237 Msa1351590:three_prime_UTR
ACTATGCAGGCAACCCCATT+TGG 0.413202 tig0012325:+7715 Msa1351590:CDS
TTTGTTAGCACTTATCAGAT+TGG 0.413995 tig0012325:-6468 Msa1351590:intergenic
GATCTAGTAGTCGTAGATAA+AGG 0.424602 tig0012325:-8205 Msa1351590:intergenic
GTAGATTGCTTCATCCAAAT+GGG 0.436253 tig0012325:-7729 Msa1351590:intergenic
TTTGATACTGAAATTGTGTA+AGG 0.436553 tig0012325:+8061 Msa1351590:three_prime_UTR
GGTAAAAGAACCTCCATAGA+AGG 0.443815 tig0012325:+6751 Msa1351590:CDS
GGTTGTGAAGGGTGTAGACT+TGG 0.444182 tig0012325:+6591 Msa1351590:CDS
ATAGAATTTAACCTTGAGCT+TGG 0.456530 tig0012325:-6809 Msa1351590:intergenic
GAAGGACAAGGAGGTTGTGA+AGG 0.458131 tig0012325:+6579 Msa1351590:CDS
GTAAATTGCAATGCGTGTAT+TGG 0.459376 tig0012325:+8004 Msa1351590:three_prime_UTR
GATTATCAATATGCTCTCAT+TGG 0.460982 tig0012325:+6895 Msa1351590:CDS
TTGCCAATTATTCCTGCTGT+TGG 0.461126 tig0012325:+6844 Msa1351590:CDS
AAGGAGTTGTAACTTATTGT+TGG 0.461791 tig0012325:+8080 Msa1351590:three_prime_UTR
GCAGGAATAATTGGCAAGAA+TGG 0.465330 tig0012325:-6838 Msa1351590:intergenic
ATGAAGTGTATTATGTAATC+AGG 0.473308 tig0012325:+7902 Msa1351590:three_prime_UTR
CCTTAGCTTTCTCAACAAGC+TGG 0.479647 tig0012325:-7754 Msa1351590:intergenic
CACTCTACACATGGCTGATG+TGG 0.483087 tig0012325:+8227 Msa1351590:three_prime_UTR
TAAACAAACTATAGATAAGT+TGG 0.483562 tig0012325:+8036 Msa1351590:three_prime_UTR
TTCATGTTCTCAATGAGACT+TGG 0.488210 tig0012325:+6722 Msa1351590:CDS
GTTGAGAAAGCTAAGGAAGA+AGG 0.488479 tig0012325:+7761 Msa1351590:CDS
CGTAGATAAAGGATAAATCA+TGG 0.492460 tig0012325:-8194 Msa1351590:intergenic
TGATATTGTACAGCAAAGAT+TGG 0.496672 tig0012325:+8117 Msa1351590:three_prime_UTR
TGTAGACTTGGAGAGGTACA+TGG 0.499697 tig0012325:+6603 Msa1351590:CDS
CAGATTGGAGTAACTTTCCA+AGG 0.509623 tig0012325:-6453 Msa1351590:intergenic
CATATTGATAATCTTGATCA+AGG 0.510400 tig0012325:-6885 Msa1351590:intergenic
TGTCTCTCTACCTGAAATAG+AGG 0.512104 tig0012325:+6515 Msa1351590:five_prime_UTR
ATCCAGTAATCTCCAACAGC+AGG 0.514048 tig0012325:-6856 Msa1351590:intergenic
TATCAATATGCTCTCATTGG+TGG 0.520368 tig0012325:+6898 Msa1351590:CDS
ATCAATATGCTCTCATTGGT+GGG 0.522349 tig0012325:+6899 Msa1351590:CDS
AAGGACAAGGAGGTTGTGAA+GGG 0.527129 tig0012325:+6580 Msa1351590:CDS
ACCCATAGATATTTATTGGT+AGG 0.528773 tig0012325:-6922 Msa1351590:intergenic
GCCTACCAATAAATATCTAT+GGG 0.548969 tig0012325:+6921 Msa1351590:CDS
CAATATAATAGAACAGAACA+AGG 0.549215 tig0012325:-6492 Msa1351590:intergenic
TTGGTCCCTAGATACTATGC+AGG 0.558593 tig0012325:+7702 Msa1351590:intron
ACAAAACACAAAGAAAACCT+TGG 0.558934 tig0012325:+6436 None:intergenic
TGAGGACCTTAATCTTACTC+AGG 0.562281 tig0012325:-7830 Msa1351590:intergenic
ACATACACTCTCAACAGTGA+TGG 0.564431 tig0012325:+6694 Msa1351590:CDS
ATAAGCACTTCCTTCTATGG+AGG 0.564915 tig0012325:-6761 Msa1351590:intergenic
AACCTCCTTGTCCTTCCCTA+CGG 0.565364 tig0012325:-6572 Msa1351590:intergenic
CCTTAATCTTACTCAGGTGG+AGG 0.569308 tig0012325:-7824 Msa1351590:intergenic
ATCACTGTTGAGAGTGTATG+TGG 0.583825 tig0012325:-6692 Msa1351590:intergenic
ATGTGGAAAGATATGGGTAG+GGG 0.588686 tig0012325:+8244 Msa1351590:three_prime_UTR
GATGTGGAAAGATATGGGTA+GGG 0.590937 tig0012325:+8243 Msa1351590:three_prime_UTR
GGAATAATTGGCAAGAATGG+AGG 0.591527 tig0012325:-6835 Msa1351590:intergenic
ATAAATCATGGGATCCCCGC+TGG 0.593383 tig0012325:-8182 Msa1351590:intergenic
AATGGGAAACACCGTAGGGA+AGG 0.597163 tig0012325:+6561 Msa1351590:exon
GTAGATAAAGGATAAATCAT+GGG 0.597389 tig0012325:-8193 Msa1351590:intergenic
AAGTGATGAAGCCAAGCTCA+AGG 0.599556 tig0012325:+6798 Msa1351590:CDS
CATACACTCTCAACAGTGAT+GGG 0.600831 tig0012325:+6695 Msa1351590:CDS
GGACCTTAATCTTACTCAGG+TGG 0.603353 tig0012325:-7827 Msa1351590:intergenic
CTACTAGATCACTCTACACA+TGG 0.604555 tig0012325:+8218 Msa1351590:three_prime_UTR
TGGCTGATGTGGAAAGATAT+GGG 0.613888 tig0012325:+8238 Msa1351590:three_prime_UTR
TAGATTGCTTCATCCAAATG+GGG 0.620741 tig0012325:-7728 Msa1351590:intergenic
TGATGTGGAAAGATATGGGT+AGG 0.621999 tig0012325:+8242 Msa1351590:three_prime_UTR
ACTTGGAGAGGTACATGGGT+AGG 0.635238 tig0012325:+6608 Msa1351590:CDS
CCAGCTTGTTGAGAAAGCTA+AGG 0.636813 tig0012325:+7754 Msa1351590:CDS
CTCAATGAGACTTGGAATGG+TGG 0.645948 tig0012325:+6730 Msa1351590:CDS
GTAGACTTGGAGAGGTACAT+GGG 0.653419 tig0012325:+6604 Msa1351590:CDS
TGAAGGGTGTAGACTTGGAG+AGG 0.655962 tig0012325:+6596 Msa1351590:CDS
TGGAGAGGTACATGGGTAGG+TGG 0.656685 tig0012325:+6611 Msa1351590:CDS
TGTGGAAAGATATGGGTAGG+GGG 0.680395 tig0012325:+8245 Msa1351590:three_prime_UTR
TCAGGTGGAGGATCACTCTG+TGG 0.704206 tig0012325:-7812 Msa1351590:intergenic
CACCGTAGGGAAGGACAAGG+AGG 0.708944 tig0012325:+6570 Msa1351590:CDS
GTTCTCAATGAGACTTGGAA+TGG 0.711280 tig0012325:+6727 Msa1351590:CDS
AATATAATAGAACAGAACAA+GGG 0.719173 tig0012325:-6491 Msa1351590:intergenic
AAACACCGTAGGGAAGGACA+AGG 0.745653 tig0012325:+6567 Msa1351590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAAAATTGTTTTATTTA+AGG + tig0012325:7316-7335 Msa1351590:intron 10.0%
!!! TTTTAAGTTTTAATTTTCTT+AGG + tig0012325:7568-7587 Msa1351590:intron 10.0%
!! TATTTATTTATTTCACAAAA+AGG - tig0012325:7868-7887 Msa1351590:intergenic 10.0%
!!! ACTAAAAATTGTTTTATTTA+AGG + tig0012325:7316-7335 Msa1351590:intron 10.0%
!!! TTTTAAGTTTTAATTTTCTT+AGG + tig0012325:7568-7587 Msa1351590:intron 10.0%
!! TATTTATTTATTTCACAAAA+AGG - tig0012325:7868-7887 Msa1351590:intergenic 10.0%
!! GTGAAATAAATAAATAGTTA+TGG + tig0012325:7872-7891 Msa1351590:three_prime_UTR 15.0%
!!! TAATTTCAAGTCAAAAATAA+AGG + tig0012325:7937-7956 Msa1351590:three_prime_UTR 15.0%
!! TAATATGAATCAATTTAGTT+TGG + tig0012325:7973-7992 Msa1351590:three_prime_UTR 15.0%
!! GTGAAATAAATAAATAGTTA+TGG + tig0012325:7872-7891 Msa1351590:three_prime_UTR 15.0%
!!! TAATTTCAAGTCAAAAATAA+AGG + tig0012325:7937-7956 Msa1351590:three_prime_UTR 15.0%
!! TAATATGAATCAATTTAGTT+TGG + tig0012325:7973-7992 Msa1351590:three_prime_UTR 15.0%
!! AATATAATAGAACAGAACAA+GGG - tig0012325:6494-6513 None:intergenic 20.0%
!!! TTGCTTTTTCTTGTTAAATT+AGG + tig0012325:6965-6984 Msa1351590:intron 20.0%
!! AAAATAATCCAAGTTATTGT+AGG - tig0012325:7684-7703 Msa1351590:intergenic 20.0%
!!! TACAATAACTTGGATTATTT+TGG + tig0012325:7683-7702 Msa1351590:intron 20.0%
!! TAAACAAACTATAGATAAGT+TGG + tig0012325:8036-8055 Msa1351590:three_prime_UTR 20.0%
!! AATATAATAGAACAGAACAA+GGG - tig0012325:6494-6513 Msa1351590:intergenic 20.0%
!!! TTGCTTTTTCTTGTTAAATT+AGG + tig0012325:6965-6984 Msa1351590:intron 20.0%
!! AAAATAATCCAAGTTATTGT+AGG - tig0012325:7684-7703 Msa1351590:intergenic 20.0%
!!! TACAATAACTTGGATTATTT+TGG + tig0012325:7683-7702 Msa1351590:intron 20.0%
!! TAAACAAACTATAGATAAGT+TGG + tig0012325:8036-8055 Msa1351590:three_prime_UTR 20.0%
! CAATATAATAGAACAGAACA+AGG - tig0012325:6495-6514 None:intergenic 25.0%
! ATAACATCCACAACAAAAAA+TGG + tig0012325:6543-6562 Msa1351590:exon 25.0%
! TAACATCCACAACAAAAAAT+GGG + tig0012325:6544-6563 Msa1351590:exon 25.0%
!! CATATTGATAATCTTGATCA+AGG - tig0012325:6888-6907 Msa1351590:intergenic 25.0%
! TCAAATATAATCACATGTGT+GGG - tig0012325:7013-7032 Msa1351590:intergenic 25.0%
! ATCAAATATAATCACATGTG+TGG - tig0012325:7014-7033 Msa1351590:intergenic 25.0%
!! TTGACTTCTAAGAAAAATTG+TGG + tig0012325:7143-7162 Msa1351590:intron 25.0%
!! ATTTTTCTTAGACACAATTG+TGG - tig0012325:7171-7190 Msa1351590:intergenic 25.0%
! ATGAAGTGTATTATGTAATC+AGG + tig0012325:7902-7921 Msa1351590:three_prime_UTR 25.0%
!! ATTGATTCATATTAGAGTTC+TGG - tig0012325:7967-7986 Msa1351590:intergenic 25.0%
! TTTGATACTGAAATTGTGTA+AGG + tig0012325:8061-8080 Msa1351590:three_prime_UTR 25.0%
! AAGATATTCAACAACGAAAA+AGG - tig0012325:8155-8174 Msa1351590:intergenic 25.0%
! GTAGATAAAGGATAAATCAT+GGG - tig0012325:8196-8215 Msa1351590:intergenic 25.0%
!!! TTCCATTCATATCATTTTTG+TGG + tig0012325:8270-8289 Msa1351590:three_prime_UTR 25.0%
! TTCCACAAAAATGATATGAA+TGG - tig0012325:8275-8294 Msa1351590:intergenic 25.0%
!!! TTCATATCATTTTTGTGGAA+TGG + tig0012325:8275-8294 Msa1351590:three_prime_UTR 25.0%
!! ATTTTTGTGGAATGGTTTTT+CGG + tig0012325:8283-8302 Msa1351590:three_prime_UTR 25.0%
! CAATATAATAGAACAGAACA+AGG - tig0012325:6495-6514 Msa1351590:intergenic 25.0%
! ATAACATCCACAACAAAAAA+TGG + tig0012325:6543-6562 Msa1351590:exon 25.0%
! TAACATCCACAACAAAAAAT+GGG + tig0012325:6544-6563 Msa1351590:exon 25.0%
!! CATATTGATAATCTTGATCA+AGG - tig0012325:6888-6907 Msa1351590:intergenic 25.0%
! TCAAATATAATCACATGTGT+GGG - tig0012325:7013-7032 Msa1351590:intergenic 25.0%
! ATCAAATATAATCACATGTG+TGG - tig0012325:7014-7033 Msa1351590:intergenic 25.0%
!! TTGACTTCTAAGAAAAATTG+TGG + tig0012325:7143-7162 Msa1351590:intron 25.0%
!! ATTTTTCTTAGACACAATTG+TGG - tig0012325:7171-7190 Msa1351590:intergenic 25.0%
! ATGAAGTGTATTATGTAATC+AGG + tig0012325:7902-7921 Msa1351590:three_prime_UTR 25.0%
!! ATTGATTCATATTAGAGTTC+TGG - tig0012325:7967-7986 Msa1351590:intergenic 25.0%
! TTTGATACTGAAATTGTGTA+AGG + tig0012325:8061-8080 Msa1351590:three_prime_UTR 25.0%
! AAGATATTCAACAACGAAAA+AGG - tig0012325:8155-8174 Msa1351590:intergenic 25.0%
! GTAGATAAAGGATAAATCAT+GGG - tig0012325:8196-8215 Msa1351590:intergenic 25.0%
!!! TTCCATTCATATCATTTTTG+TGG + tig0012325:8270-8289 Msa1351590:three_prime_UTR 25.0%
! TTCCACAAAAATGATATGAA+TGG - tig0012325:8275-8294 Msa1351590:intergenic 25.0%
!!! TTCATATCATTTTTGTGGAA+TGG + tig0012325:8275-8294 Msa1351590:three_prime_UTR 25.0%
!! ATTTTTGTGGAATGGTTTTT+CGG + tig0012325:8283-8302 Msa1351590:three_prime_UTR 25.0%
TTTGTTAGCACTTATCAGAT+TGG - tig0012325:6471-6490 None:intergenic 30.0%
ATAGAATTTAACCTTGAGCT+TGG - tig0012325:6812-6831 Msa1351590:intergenic 30.0%
GATTATCAATATGCTCTCAT+TGG + tig0012325:6895-6914 Msa1351590:CDS 30.0%
GCCTACCAATAAATATCTAT+GGG + tig0012325:6921-6940 Msa1351590:CDS 30.0%
ACCCATAGATATTTATTGGT+AGG - tig0012325:6925-6944 Msa1351590:intergenic 30.0%
GCTTACCCATAGATATTTAT+TGG - tig0012325:6929-6948 Msa1351590:intergenic 30.0%
AAAAAGCAACGTTAGAGATA+GGG - tig0012325:6954-6973 Msa1351590:intergenic 30.0%
TCTCTCATATGAAAAATGTC+AGG - tig0012325:7482-7501 Msa1351590:intergenic 30.0%
CTTTGACTCATTATAAGAGA+TGG + tig0012325:7515-7534 Msa1351590:intron 30.0%
GAAAGAGAGAAGATTCAATT+TGG - tig0012325:7626-7645 Msa1351590:intergenic 30.0%
TAATCCAAGTTATTGTAGGA+AGG - tig0012325:7680-7699 Msa1351590:intergenic 30.0%
AAGGAGTTGTAACTTATTGT+TGG + tig0012325:8080-8099 Msa1351590:three_prime_UTR 30.0%
TGATATTGTACAGCAAAGAT+TGG + tig0012325:8117-8136 Msa1351590:three_prime_UTR 30.0%
CGTAGATAAAGGATAAATCA+TGG - tig0012325:8197-8216 Msa1351590:intergenic 30.0%
TTTGTTAGCACTTATCAGAT+TGG - tig0012325:6471-6490 Msa1351590:intergenic 30.0%
ATAGAATTTAACCTTGAGCT+TGG - tig0012325:6812-6831 Msa1351590:intergenic 30.0%
GATTATCAATATGCTCTCAT+TGG + tig0012325:6895-6914 Msa1351590:CDS 30.0%
GCCTACCAATAAATATCTAT+GGG + tig0012325:6921-6940 Msa1351590:CDS 30.0%
ACCCATAGATATTTATTGGT+AGG - tig0012325:6925-6944 Msa1351590:intergenic 30.0%
GCTTACCCATAGATATTTAT+TGG - tig0012325:6929-6948 Msa1351590:intergenic 30.0%
AAAAAGCAACGTTAGAGATA+GGG - tig0012325:6954-6973 Msa1351590:intergenic 30.0%
TCTCTCATATGAAAAATGTC+AGG - tig0012325:7482-7501 Msa1351590:intergenic 30.0%
CTTTGACTCATTATAAGAGA+TGG + tig0012325:7515-7534 Msa1351590:intron 30.0%
GAAAGAGAGAAGATTCAATT+TGG - tig0012325:7626-7645 Msa1351590:intergenic 30.0%
TAATCCAAGTTATTGTAGGA+AGG - tig0012325:7680-7699 Msa1351590:intergenic 30.0%
AAGGAGTTGTAACTTATTGT+TGG + tig0012325:8080-8099 Msa1351590:three_prime_UTR 30.0%
TGATATTGTACAGCAAAGAT+TGG + tig0012325:8117-8136 Msa1351590:three_prime_UTR 30.0%
CGTAGATAAAGGATAAATCA+TGG - tig0012325:8197-8216 Msa1351590:intergenic 30.0%
GTTATTGCTTCCTCTATTTC+AGG - tig0012325:6528-6547 Msa1351590:intergenic 35.0%
!!! GTGTTTCCCATTTTTTGTTG+TGG - tig0012325:6553-6572 Msa1351590:intergenic 35.0%
AAAAAATGGGAAACACCGTA+GGG + tig0012325:6557-6576 Msa1351590:exon 35.0%
! TTTTGGGCTGAAAGAATGAA+GGG - tig0012325:6654-6673 Msa1351590:intergenic 35.0%
!! TTTTTGGGCTGAAAGAATGA+AGG - tig0012325:6655-6674 Msa1351590:intergenic 35.0%
TCATTCTTTCAGCCCAAAAA+TGG + tig0012325:6655-6674 Msa1351590:CDS 35.0%
!! CTTGTGTTCTCTCCATTTTT+GGG - tig0012325:6670-6689 Msa1351590:intergenic 35.0%
! TCTTGTGTTCTCTCCATTTT+TGG - tig0012325:6671-6690 Msa1351590:intergenic 35.0%
TTCATGTTCTCAATGAGACT+TGG + tig0012325:6722-6741 Msa1351590:CDS 35.0%
CTTATAAGCACTTCCTTCTA+TGG - tig0012325:6767-6786 Msa1351590:intergenic 35.0%
!! CATAGAAGGAAGTGCTTATA+AGG + tig0012325:6765-6784 Msa1351590:CDS 35.0%
TATCAATATGCTCTCATTGG+TGG + tig0012325:6898-6917 Msa1351590:CDS 35.0%
ATCAATATGCTCTCATTGGT+GGG + tig0012325:6899-6918 Msa1351590:CDS 35.0%
GGCCTACCAATAAATATCTA+TGG + tig0012325:6920-6939 Msa1351590:CDS 35.0%
GAAAAAGCAACGTTAGAGAT+AGG - tig0012325:6955-6974 Msa1351590:intergenic 35.0%
! AGAGCAAGAAAGATTAGTTG+TGG + tig0012325:7118-7137 Msa1351590:intron 35.0%
CAATCATAGCTAGATTGTCT+TGG - tig0012325:7231-7250 Msa1351590:intergenic 35.0%
AAATTGAGAGTGACCACATT+GGG - tig0012325:7411-7430 Msa1351590:intergenic 35.0%
AAAATTGAGAGTGACCACAT+TGG - tig0012325:7412-7431 Msa1351590:intergenic 35.0%
GAACAACACGAAAACTATGA+AGG + tig0012325:7599-7618 Msa1351590:intron 35.0%
TAGATTGCTTCATCCAAATG+GGG - tig0012325:7731-7750 Msa1351590:intergenic 35.0%
GTAGATTGCTTCATCCAAAT+GGG - tig0012325:7732-7751 Msa1351590:intergenic 35.0%
TGTAGATTGCTTCATCCAAA+TGG - tig0012325:7733-7752 Msa1351590:intergenic 35.0%
!!! AAAAGGCATTTTGTGTCTTG+AGG - tig0012325:7851-7870 Msa1351590:intergenic 35.0%
GTAAATTGCAATGCGTGTAT+TGG + tig0012325:8004-8023 Msa1351590:three_prime_UTR 35.0%
GATCTAGTAGTCGTAGATAA+AGG - tig0012325:8208-8227 Msa1351590:intergenic 35.0%
GTTATTGCTTCCTCTATTTC+AGG - tig0012325:6528-6547 Msa1351590:intergenic 35.0%
!!! GTGTTTCCCATTTTTTGTTG+TGG - tig0012325:6553-6572 Msa1351590:intergenic 35.0%
AAAAAATGGGAAACACCGTA+GGG + tig0012325:6557-6576 Msa1351590:exon 35.0%
! TTTTGGGCTGAAAGAATGAA+GGG - tig0012325:6654-6673 Msa1351590:intergenic 35.0%
!! TTTTTGGGCTGAAAGAATGA+AGG - tig0012325:6655-6674 Msa1351590:intergenic 35.0%
TCATTCTTTCAGCCCAAAAA+TGG + tig0012325:6655-6674 Msa1351590:CDS 35.0%
!! CTTGTGTTCTCTCCATTTTT+GGG - tig0012325:6670-6689 Msa1351590:intergenic 35.0%
! TCTTGTGTTCTCTCCATTTT+TGG - tig0012325:6671-6690 Msa1351590:intergenic 35.0%
TTCATGTTCTCAATGAGACT+TGG + tig0012325:6722-6741 Msa1351590:CDS 35.0%
CTTATAAGCACTTCCTTCTA+TGG - tig0012325:6767-6786 Msa1351590:intergenic 35.0%
!! CATAGAAGGAAGTGCTTATA+AGG + tig0012325:6765-6784 Msa1351590:CDS 35.0%
TATCAATATGCTCTCATTGG+TGG + tig0012325:6898-6917 Msa1351590:CDS 35.0%
ATCAATATGCTCTCATTGGT+GGG + tig0012325:6899-6918 Msa1351590:CDS 35.0%
GGCCTACCAATAAATATCTA+TGG + tig0012325:6920-6939 Msa1351590:CDS 35.0%
GAAAAAGCAACGTTAGAGAT+AGG - tig0012325:6955-6974 Msa1351590:intergenic 35.0%
! AGAGCAAGAAAGATTAGTTG+TGG + tig0012325:7118-7137 Msa1351590:intron 35.0%
CAATCATAGCTAGATTGTCT+TGG - tig0012325:7231-7250 Msa1351590:intergenic 35.0%
AAATTGAGAGTGACCACATT+GGG - tig0012325:7411-7430 Msa1351590:intergenic 35.0%
AAAATTGAGAGTGACCACAT+TGG - tig0012325:7412-7431 Msa1351590:intergenic 35.0%
GAACAACACGAAAACTATGA+AGG + tig0012325:7599-7618 Msa1351590:intron 35.0%
TAGATTGCTTCATCCAAATG+GGG - tig0012325:7731-7750 Msa1351590:intergenic 35.0%
GTAGATTGCTTCATCCAAAT+GGG - tig0012325:7732-7751 Msa1351590:intergenic 35.0%
TGTAGATTGCTTCATCCAAA+TGG - tig0012325:7733-7752 Msa1351590:intergenic 35.0%
!!! AAAAGGCATTTTGTGTCTTG+AGG - tig0012325:7851-7870 Msa1351590:intergenic 35.0%
GTAAATTGCAATGCGTGTAT+TGG + tig0012325:8004-8023 Msa1351590:three_prime_UTR 35.0%
GATCTAGTAGTCGTAGATAA+AGG - tig0012325:8208-8227 Msa1351590:intergenic 35.0%
CAGATTGGAGTAACTTTCCA+AGG - tig0012325:6456-6475 None:intergenic 40.0%
TGTCTCTCTACCTGAAATAG+AGG + tig0012325:6515-6534 Msa1351590:five_prime_UTR 40.0%
CAAAAAATGGGAAACACCGT+AGG + tig0012325:6556-6575 Msa1351590:exon 40.0%
! ATCACTGTTGAGAGTGTATG+TGG - tig0012325:6695-6714 Msa1351590:intergenic 40.0%
ACATACACTCTCAACAGTGA+TGG + tig0012325:6694-6713 Msa1351590:CDS 40.0%
CATACACTCTCAACAGTGAT+GGG + tig0012325:6695-6714 Msa1351590:CDS 40.0%
GTTCTCAATGAGACTTGGAA+TGG + tig0012325:6727-6746 Msa1351590:CDS 40.0%
GGTAAAAGAACCTCCATAGA+AGG + tig0012325:6751-6770 Msa1351590:CDS 40.0%
ATAAGCACTTCCTTCTATGG+AGG - tig0012325:6764-6783 Msa1351590:intergenic 40.0%
!! AGCTTGGCTTCATCACTTTT+GGG - tig0012325:6796-6815 Msa1351590:intergenic 40.0%
GGAATAATTGGCAAGAATGG+AGG - tig0012325:6838-6857 Msa1351590:intergenic 40.0%
GCAGGAATAATTGGCAAGAA+TGG - tig0012325:6841-6860 Msa1351590:intergenic 40.0%
TTGCCAATTATTCCTGCTGT+TGG + tig0012325:6844-6863 Msa1351590:CDS 40.0%
TCTCCAACAGCAGGAATAAT+TGG - tig0012325:6850-6869 Msa1351590:intergenic 40.0%
ATGAAGCTATGACACAGACA+CGG - tig0012325:7098-7117 Msa1351590:intergenic 40.0%
! GGTCACTCTCAATTTTCTTG+CGG + tig0012325:7416-7435 Msa1351590:intron 40.0%
CGTTCCTTCCTACAATAACT+TGG + tig0012325:7673-7692 Msa1351590:intron 40.0%
GTTGAGAAAGCTAAGGAAGA+AGG + tig0012325:7761-7780 Msa1351590:CDS 40.0%
TGAGGACCTTAATCTTACTC+AGG - tig0012325:7833-7852 Msa1351590:intergenic 40.0%
! GAATATCTTTTGCTGACCAG+CGG + tig0012325:8166-8185 Msa1351590:three_prime_UTR 40.0%
! AATATCTTTTGCTGACCAGC+GGG + tig0012325:8167-8186 Msa1351590:three_prime_UTR 40.0%
CTACTAGATCACTCTACACA+TGG + tig0012325:8218-8237 Msa1351590:three_prime_UTR 40.0%
ATGGCTGATGTGGAAAGATA+TGG + tig0012325:8237-8256 Msa1351590:three_prime_UTR 40.0%
TGGCTGATGTGGAAAGATAT+GGG + tig0012325:8238-8257 Msa1351590:three_prime_UTR 40.0%
TGATGTGGAAAGATATGGGT+AGG + tig0012325:8242-8261 Msa1351590:three_prime_UTR 40.0%
GATGTGGAAAGATATGGGTA+GGG + tig0012325:8243-8262 Msa1351590:three_prime_UTR 40.0%
ATGTGGAAAGATATGGGTAG+GGG + tig0012325:8244-8263 Msa1351590:three_prime_UTR 40.0%
CAGATTGGAGTAACTTTCCA+AGG - tig0012325:6456-6475 Msa1351590:intergenic 40.0%
TGTCTCTCTACCTGAAATAG+AGG + tig0012325:6515-6534 Msa1351590:five_prime_UTR 40.0%
CAAAAAATGGGAAACACCGT+AGG + tig0012325:6556-6575 Msa1351590:exon 40.0%
! ATCACTGTTGAGAGTGTATG+TGG - tig0012325:6695-6714 Msa1351590:intergenic 40.0%
ACATACACTCTCAACAGTGA+TGG + tig0012325:6694-6713 Msa1351590:CDS 40.0%
CATACACTCTCAACAGTGAT+GGG + tig0012325:6695-6714 Msa1351590:CDS 40.0%
GTTCTCAATGAGACTTGGAA+TGG + tig0012325:6727-6746 Msa1351590:CDS 40.0%
GGTAAAAGAACCTCCATAGA+AGG + tig0012325:6751-6770 Msa1351590:CDS 40.0%
ATAAGCACTTCCTTCTATGG+AGG - tig0012325:6764-6783 Msa1351590:intergenic 40.0%
!! AGCTTGGCTTCATCACTTTT+GGG - tig0012325:6796-6815 Msa1351590:intergenic 40.0%
GGAATAATTGGCAAGAATGG+AGG - tig0012325:6838-6857 Msa1351590:intergenic 40.0%
GCAGGAATAATTGGCAAGAA+TGG - tig0012325:6841-6860 Msa1351590:intergenic 40.0%
TTGCCAATTATTCCTGCTGT+TGG + tig0012325:6844-6863 Msa1351590:CDS 40.0%
TCTCCAACAGCAGGAATAAT+TGG - tig0012325:6850-6869 Msa1351590:intergenic 40.0%
ATGAAGCTATGACACAGACA+CGG - tig0012325:7098-7117 Msa1351590:intergenic 40.0%
! GGTCACTCTCAATTTTCTTG+CGG + tig0012325:7416-7435 Msa1351590:intron 40.0%
CGTTCCTTCCTACAATAACT+TGG + tig0012325:7673-7692 Msa1351590:intron 40.0%
GTTGAGAAAGCTAAGGAAGA+AGG + tig0012325:7761-7780 Msa1351590:CDS 40.0%
TGAGGACCTTAATCTTACTC+AGG - tig0012325:7833-7852 Msa1351590:intergenic 40.0%
! GAATATCTTTTGCTGACCAG+CGG + tig0012325:8166-8185 Msa1351590:three_prime_UTR 40.0%
! AATATCTTTTGCTGACCAGC+GGG + tig0012325:8167-8186 Msa1351590:three_prime_UTR 40.0%
CTACTAGATCACTCTACACA+TGG + tig0012325:8218-8237 Msa1351590:three_prime_UTR 40.0%
ATGGCTGATGTGGAAAGATA+TGG + tig0012325:8237-8256 Msa1351590:three_prime_UTR 40.0%
TGGCTGATGTGGAAAGATAT+GGG + tig0012325:8238-8257 Msa1351590:three_prime_UTR 40.0%
TGATGTGGAAAGATATGGGT+AGG + tig0012325:8242-8261 Msa1351590:three_prime_UTR 40.0%
GATGTGGAAAGATATGGGTA+GGG + tig0012325:8243-8262 Msa1351590:three_prime_UTR 40.0%
ATGTGGAAAGATATGGGTAG+GGG + tig0012325:8244-8263 Msa1351590:three_prime_UTR 40.0%
AAGGACAAGGAGGTTGTGAA+GGG + tig0012325:6580-6599 Msa1351590:CDS 45.0%
! TGTAGACTTGGAGAGGTACA+TGG + tig0012325:6603-6622 Msa1351590:CDS 45.0%
! GTAGACTTGGAGAGGTACAT+GGG + tig0012325:6604-6623 Msa1351590:CDS 45.0%
CTCAATGAGACTTGGAATGG+TGG + tig0012325:6730-6749 Msa1351590:CDS 45.0%
!! GCTTGGCTTCATCACTTTTG+GGG - tig0012325:6795-6814 Msa1351590:intergenic 45.0%
! GAGCTTGGCTTCATCACTTT+TGG - tig0012325:6797-6816 Msa1351590:intergenic 45.0%
AAGTGATGAAGCCAAGCTCA+AGG + tig0012325:6798-6817 Msa1351590:CDS 45.0%
TTCCTGCTGTTGGAGATTAC+TGG + tig0012325:6854-6873 Msa1351590:CDS 45.0%
ATCCAGTAATCTCCAACAGC+AGG - tig0012325:6859-6878 Msa1351590:intergenic 45.0%
CACATGTGTGGGATGTAACT+TGG - tig0012325:7002-7021 Msa1351590:intergenic 45.0%
TTGGTCCCTAGATACTATGC+AGG + tig0012325:7702-7721 Msa1351590:intron 45.0%
GGTTGCCTGCATAGTATCTA+GGG - tig0012325:7710-7729 Msa1351590:intergenic 45.0%
! CCTTAGCTTTCTCAACAAGC+TGG - tig0012325:7757-7776 Msa1351590:intergenic 45.0%
!! CCAGCTTGTTGAGAAAGCTA+AGG + tig0012325:7754-7773 Msa1351590:CDS 45.0%
CCTTAATCTTACTCAGGTGG+AGG - tig0012325:7827-7846 Msa1351590:intergenic 45.0%
CCTCCACCTGAGTAAGATTA+AGG + tig0012325:7824-7843 Msa1351590:exon 45.0%
GGACCTTAATCTTACTCAGG+TGG - tig0012325:7830-7849 Msa1351590:intergenic 45.0%
! ATATCTTTTGCTGACCAGCG+GGG + tig0012325:8168-8187 Msa1351590:three_prime_UTR 45.0%
TGTGGAAAGATATGGGTAGG+GGG + tig0012325:8245-8264 Msa1351590:three_prime_UTR 45.0%
AAGGACAAGGAGGTTGTGAA+GGG + tig0012325:6580-6599 Msa1351590:CDS 45.0%
! TGTAGACTTGGAGAGGTACA+TGG + tig0012325:6603-6622 Msa1351590:CDS 45.0%
! GTAGACTTGGAGAGGTACAT+GGG + tig0012325:6604-6623 Msa1351590:CDS 45.0%
CTCAATGAGACTTGGAATGG+TGG + tig0012325:6730-6749 Msa1351590:CDS 45.0%
!! GCTTGGCTTCATCACTTTTG+GGG - tig0012325:6795-6814 Msa1351590:intergenic 45.0%
! GAGCTTGGCTTCATCACTTT+TGG - tig0012325:6797-6816 Msa1351590:intergenic 45.0%
AAGTGATGAAGCCAAGCTCA+AGG + tig0012325:6798-6817 Msa1351590:CDS 45.0%
TTCCTGCTGTTGGAGATTAC+TGG + tig0012325:6854-6873 Msa1351590:CDS 45.0%
ATCCAGTAATCTCCAACAGC+AGG - tig0012325:6859-6878 Msa1351590:intergenic 45.0%
CACATGTGTGGGATGTAACT+TGG - tig0012325:7002-7021 Msa1351590:intergenic 45.0%
TTGGTCCCTAGATACTATGC+AGG + tig0012325:7702-7721 Msa1351590:intron 45.0%
GGTTGCCTGCATAGTATCTA+GGG - tig0012325:7710-7729 Msa1351590:intergenic 45.0%
! CCTTAGCTTTCTCAACAAGC+TGG - tig0012325:7757-7776 Msa1351590:intergenic 45.0%
!! CCAGCTTGTTGAGAAAGCTA+AGG + tig0012325:7754-7773 Msa1351590:CDS 45.0%
CCTTAATCTTACTCAGGTGG+AGG - tig0012325:7827-7846 Msa1351590:intergenic 45.0%
CCTCCACCTGAGTAAGATTA+AGG + tig0012325:7824-7843 Msa1351590:exon 45.0%
GGACCTTAATCTTACTCAGG+TGG - tig0012325:7830-7849 Msa1351590:intergenic 45.0%
! ATATCTTTTGCTGACCAGCG+GGG + tig0012325:8168-8187 Msa1351590:three_prime_UTR 45.0%
TGTGGAAAGATATGGGTAGG+GGG + tig0012325:8245-8264 Msa1351590:three_prime_UTR 45.0%
AATGGGAAACACCGTAGGGA+AGG + tig0012325:6561-6580 Msa1351590:exon 50.0%
AAACACCGTAGGGAAGGACA+AGG + tig0012325:6567-6586 Msa1351590:CDS 50.0%
AACCTCCTTGTCCTTCCCTA+CGG - tig0012325:6575-6594 Msa1351590:intergenic 50.0%
GAAGGACAAGGAGGTTGTGA+AGG + tig0012325:6579-6598 Msa1351590:CDS 50.0%
! GGTTGTGAAGGGTGTAGACT+TGG + tig0012325:6591-6610 Msa1351590:CDS 50.0%
! TGAAGGGTGTAGACTTGGAG+AGG + tig0012325:6596-6615 Msa1351590:CDS 50.0%
! ACTTGGAGAGGTACATGGGT+AGG + tig0012325:6608-6627 Msa1351590:CDS 50.0%
TAGAGAGTGAACGCCCAATG+TGG + tig0012325:7395-7414 Msa1351590:intron 50.0%
GGGTTGCCTGCATAGTATCT+AGG - tig0012325:7711-7730 Msa1351590:intergenic 50.0%
ACTATGCAGGCAACCCCATT+TGG + tig0012325:7715-7734 Msa1351590:CDS 50.0%
ATAAATCATGGGATCCCCGC+TGG - tig0012325:8185-8204 Msa1351590:intergenic 50.0%
CACTCTACACATGGCTGATG+TGG + tig0012325:8227-8246 Msa1351590:three_prime_UTR 50.0%
AATGGGAAACACCGTAGGGA+AGG + tig0012325:6561-6580 Msa1351590:exon 50.0%
AAACACCGTAGGGAAGGACA+AGG + tig0012325:6567-6586 Msa1351590:CDS 50.0%
AACCTCCTTGTCCTTCCCTA+CGG - tig0012325:6575-6594 Msa1351590:intergenic 50.0%
GAAGGACAAGGAGGTTGTGA+AGG + tig0012325:6579-6598 Msa1351590:CDS 50.0%
! GGTTGTGAAGGGTGTAGACT+TGG + tig0012325:6591-6610 Msa1351590:CDS 50.0%
! TGAAGGGTGTAGACTTGGAG+AGG + tig0012325:6596-6615 Msa1351590:CDS 50.0%
! ACTTGGAGAGGTACATGGGT+AGG + tig0012325:6608-6627 Msa1351590:CDS 50.0%
TAGAGAGTGAACGCCCAATG+TGG + tig0012325:7395-7414 Msa1351590:intron 50.0%
GGGTTGCCTGCATAGTATCT+AGG - tig0012325:7711-7730 Msa1351590:intergenic 50.0%
ACTATGCAGGCAACCCCATT+TGG + tig0012325:7715-7734 Msa1351590:CDS 50.0%
ATAAATCATGGGATCCCCGC+TGG - tig0012325:8185-8204 Msa1351590:intergenic 50.0%
CACTCTACACATGGCTGATG+TGG + tig0012325:8227-8246 Msa1351590:three_prime_UTR 50.0%
! TGGAGAGGTACATGGGTAGG+TGG + tig0012325:6611-6630 Msa1351590:CDS 55.0%
TCAGGTGGAGGATCACTCTG+TGG - tig0012325:7815-7834 Msa1351590:intergenic 55.0%
! TGGAGAGGTACATGGGTAGG+TGG + tig0012325:6611-6630 Msa1351590:CDS 55.0%
TCAGGTGGAGGATCACTCTG+TGG - tig0012325:7815-7834 Msa1351590:intergenic 55.0%
CACCGTAGGGAAGGACAAGG+AGG + tig0012325:6570-6589 Msa1351590:CDS 60.0%
CACCGTAGGGAAGGACAAGG+AGG + tig0012325:6570-6589 Msa1351590:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0012325 gene 6442 8347 6442 ID=Msa1351590;Name=Msa1351590
tig0012325 mRNA 6442 8347 6442 ID=Msa1351590-mRNA-1;Parent=Msa1351590;Name=Msa1351590-mRNA-1;_AED=0.29;_eAED=0.29;_QI=120|1|1|1|1|1|2|509|168
tig0012325 exon 6442 6942 6442 ID=Msa1351590-mRNA-1:exon:7786;Parent=Msa1351590-mRNA-1
tig0012325 exon 7713 8347 7713 ID=Msa1351590-mRNA-1:exon:7787;Parent=Msa1351590-mRNA-1
tig0012325 five_prime_UTR 6442 6561 6442 ID=Msa1351590-mRNA-1:five_prime_utr;Parent=Msa1351590-mRNA-1
tig0012325 CDS 6562 6942 6562 ID=Msa1351590-mRNA-1:cds;Parent=Msa1351590-mRNA-1
tig0012325 CDS 7713 7838 7713 ID=Msa1351590-mRNA-1:cds;Parent=Msa1351590-mRNA-1
tig0012325 three_prime_UTR 7839 8347 7839 ID=Msa1351590-mRNA-1:three_prime_utr;Parent=Msa1351590-mRNA-1
Gene Sequence

>Msa1351590

ATGGGAAACACCGTAGGGAAGGACAAGGAGGTTGTGAAGGGTGTAGACTTGGAGAGGTACATGGGTAGGTGGTATGAGATAGCTTCTTTCCCTTCATTCTTTCAGCCCAAAAATGGAGAGAACACAAGAGCCACATACACTCTCAACAGTGATGGGACTGTTCATGTTCTCAATGAGACTTGGAATGGTGGTAAAAGAACCTCCATAGAAGGAAGTGCTTATAAGGCTGACCCCAAAAGTGATGAAGCCAAGCTCAAGGTTAAATTCTATGTTCCTCCATTCTTGCCAATTATTCCTGCTGTTGGAGATTACTGGATTTTGTACCTTGATCAAGATTATCAATATGCTCTCATTGGTGGGCCTACCAATAAATATCTATGGATACTATGCAGGCAACCCCATTTGGATGAAGCAATCTACAACCAGCTTGTTGAGAAAGCTAAGGAAGAAGGTTATGATGTGAGTAAATTGCACAAGACTCCACAGAGTGATCCTCCACCTGAGTAA

Protein sequence

>Msa1351590

MGNTVGKDKEVVKGVDLERYMGRWYEIASFPSFFQPKNGENTRATYTLNSDGTVHVLNETWNGGKRTSIEGSAYKADPKSDEAKLKVKFYVPPFLPIIPAVGDYWILYLDQDYQYALIGGPTNKYLWILCRQPHLDEAIYNQLVEKAKEEGYDVSKLHKTPQSDPPPE*