AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922340 MtrunA17_Chr6g0480021 71.575 292 32 3 126 366 12 303 1.27e-141 404
Msa0922340 MtrunA17_Chr6g0480021 63.830 94 34 0 1 94 1 94 5.39e-34 127
Msa0922340 MtrunA17_Chr4g0036301 82.090 134 24 0 233 366 39 172 1.96e-77 236
Msa0922340 MtrunA17_Chr4g0036261 79.699 133 27 0 233 365 51 183 4.11e-74 228
Msa0922340 MtrunA17_Chr1g0173621 38.172 372 166 8 1 365 1 315 2.20e-73 230
Msa0922340 MtrunA17_Chr4g0036321 78.195 133 29 0 233 365 39 171 4.67e-72 222
Msa0922340 MtrunA17_Chr6g0480011 98.113 106 2 0 1 106 1 106 2.22e-67 215
Msa0922340 MtrunA17_Chr6g0480011 65.468 139 48 0 227 365 183 321 1.47e-60 197
Msa0922340 MtrunA17_Chr6g0480011 65.625 96 33 0 126 221 12 107 8.42e-37 135
Msa0922340 MtrunA17_Chr5g0447941 37.398 369 167 13 1 363 1 311 2.99e-60 196
Msa0922340 MtrunA17_Chr5g0447951 37.127 369 168 13 1 363 1 311 8.93e-60 195
Msa0922340 MtrunA17_Chr5g0447961 37.127 369 168 13 1 363 1 311 8.93e-60 195
Msa0922340 MtrunA17_Chr6g0479981 37.459 307 122 7 126 363 12 317 1.47e-54 182
Msa0922340 MtrunA17_Chr6g0479981 53.774 106 49 0 1 106 1 106 3.74e-33 125
Msa0922340 MtrunA17_Chr4g0036311 77.000 100 23 0 126 225 12 111 2.48e-52 169
Msa0922340 MtrunA17_Chr4g0036311 64.151 106 38 0 1 106 1 106 3.70e-44 148
Msa0922340 MtrunA17_Chr4g0036291 80.412 97 19 0 126 222 12 108 5.45e-52 168
Msa0922340 MtrunA17_Chr4g0036291 65.094 106 37 0 1 106 1 106 4.67e-45 150
Msa0922340 MtrunA17_Chr6g0479791 94.253 87 3 1 282 366 18 104 5.59e-52 168
Msa0922340 MtrunA17_Chr8g0368921 32.967 364 180 13 11 365 10 318 2.07e-51 174
Msa0922340 MtrunA17_Chr8g0368921 37.624 101 55 3 124 221 9 104 7.71e-11 62.8
Msa0922340 MtrunA17_Chr4g0018921 33.791 364 179 12 9 365 6 314 5.68e-51 172
Msa0922340 MtrunA17_Chr4g0018921 48.544 103 47 5 120 221 3 100 9.73e-20 88.6
Msa0922340 MtrunA17_Chr6g0479811 63.717 113 41 0 235 347 1 113 2.03e-48 159
Msa0922340 MtrunA17_Chr4g0036251 76.289 97 17 2 126 222 12 102 2.76e-46 153
Msa0922340 MtrunA17_Chr4g0036251 61.321 106 35 2 1 106 1 100 3.96e-38 132
Msa0922340 MtrunA17_Chr4g0036051 30.029 343 175 10 9 339 3 292 5.31e-39 141
Msa0922340 MtrunA17_Chr8g0368931 28.650 363 207 5 4 365 3 314 3.34e-38 139
Msa0922340 MtrunA17_Chr3g0121001 52.985 134 49 4 233 363 191 313 3.54e-36 133
Msa0922340 MtrunA17_Chr3g0121001 49.123 114 54 2 2 112 3 115 3.26e-25 103
Msa0922340 MtrunA17_Chr3g0121001 48.454 97 46 3 126 220 15 109 1.98e-22 96.3
Msa0922340 MtrunA17_Chr4g0009581 30.565 301 140 7 124 363 10 302 1.88e-34 129
Msa0922340 MtrunA17_Chr4g0009581 43.210 81 42 2 11 91 11 87 1.85e-12 67.4
Msa0922340 MtrunA17_Chr4g0009531 41.791 134 75 2 233 365 181 312 4.57e-32 122
Msa0922340 MtrunA17_Chr4g0009531 43.617 94 47 3 126 218 11 99 4.92e-14 72.0
Msa0922340 MtrunA17_Chr4g0009531 42.553 94 50 2 11 104 10 99 2.34e-13 70.1
Msa0922340 MtrunA17_Chr7g0239701 46.269 134 70 2 233 365 185 317 2.89e-31 120
Msa0922340 MtrunA17_Chr4g0009621 40.299 134 75 2 233 365 99 228 8.42e-28 108
Msa0922340 MtrunA17_Chr7g0243551 37.069 116 70 1 229 344 184 296 1.86e-19 87.8
Msa0922340 MtrunA17_Chr7g0243551 40.816 98 53 2 124 221 16 108 1.64e-16 79.3
Msa0922340 MtrunA17_Chr7g0243551 41.667 96 51 2 11 106 17 107 5.40e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922340 AT1G59960.1 35.946 370 187 6 1 365 1 325 1.02e-73 232
Msa0922340 AT1G59950.1 36.932 352 176 6 15 365 13 319 4.99e-71 225
Msa0922340 AT5G62420.1 32.961 358 187 10 11 365 8 315 6.87e-51 172
Msa0922340 AT2G21260.1 29.970 337 185 9 8 339 2 292 1.43e-39 142
Msa0922340 AT2G21250.1 29.080 337 188 9 8 339 2 292 1.22e-37 137
Msa0922340 AT2G37790.1 46.617 133 71 0 233 365 181 313 1.33e-37 137
Msa0922340 AT2G37790.1 42.268 97 50 3 11 106 10 101 3.66e-14 72.8
Msa0922340 AT2G37790.1 42.857 98 50 3 124 220 9 101 5.68e-14 72.4
Msa0922340 AT2G37760.2 30.645 310 139 7 124 365 9 310 3.45e-36 134
Msa0922340 AT2G37760.2 43.750 96 46 2 11 106 10 97 3.81e-16 78.6
Msa0922340 AT2G37760.1 30.645 310 139 7 124 365 9 310 3.45e-36 134
Msa0922340 AT2G37760.1 43.750 96 46 2 11 106 10 97 3.81e-16 78.6
Msa0922340 AT2G37770.2 46.269 134 71 1 233 365 181 314 4.21e-34 128
Msa0922340 AT2G37770.2 40.367 109 61 2 3 111 2 106 7.80e-16 77.8
Msa0922340 AT2G37770.2 43.750 96 48 3 126 220 11 101 4.01e-14 72.8
Msa0922340 AT3G53880.1 44.776 134 73 1 233 365 181 314 1.47e-33 127
Msa0922340 AT3G53880.1 41.667 96 52 2 11 106 10 101 1.28e-11 65.5
Msa0922340 AT2G37760.6 41.429 140 81 1 227 365 125 264 1.04e-30 118
Msa0922340 AT2G37760.7 41.429 140 81 1 227 365 125 264 1.04e-30 118
Msa0922340 AT2G37760.5 29.825 285 125 6 124 341 9 285 3.09e-30 117
Msa0922340 AT2G37760.5 43.750 96 46 2 11 106 10 97 3.18e-16 78.6
Msa0922340 AT2G37760.4 29.371 286 127 6 124 342 9 286 7.09e-30 116
Msa0922340 AT2G37760.4 43.750 96 46 2 11 106 10 97 3.23e-16 78.6
Msa0922340 AT2G37760.3 29.371 286 127 6 124 342 9 286 7.09e-30 116
Msa0922340 AT2G37760.3 43.750 96 46 2 11 106 10 97 3.23e-16 78.6
Msa0922340 AT3G53880.2 43.925 107 60 0 233 339 181 287 3.84e-24 101
Msa0922340 AT3G53880.2 41.667 96 52 2 11 106 10 101 1.18e-11 65.5
Msa0922340 AT5G01670.1 37.313 134 78 4 233 363 189 319 1.10e-23 100
Msa0922340 AT5G01670.1 36.538 104 61 2 3 106 10 108 3.53e-14 73.2
Msa0922340 AT5G01670.2 37.313 134 78 4 233 363 216 346 1.44e-23 100
Msa0922340 AT5G01670.2 34.211 114 62 4 127 237 20 123 1.39e-11 65.5
Msa0922340 AT2G21250.2 27.698 278 150 9 8 280 2 233 3.68e-21 91.7
Msa0922340 AT2G21260.2 36.111 108 66 1 233 337 115 222 9.22e-19 85.1
Msa0922340 AT2G37770.1 41.346 104 57 2 3 106 2 101 3.59e-16 78.6
Msa0922340 AT2G37770.1 43.750 96 48 3 126 220 11 101 2.21e-14 73.2

Find 95 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6_2:-60643925 Msa0922340:CDS
TGAAGCTCTCACTTCAATTT+TGG 0.164436 6_2:-60644704 Msa0922340:CDS
TTCGATTCTGCTTCTGTCTA+TGG 0.228641 6_2:-60648520 Msa0922340:CDS
TTTGATACAGCTTCTATCTA+TGG 0.288397 6_2:-60644652 Msa0922340:CDS
AACCTCTTCATCATTTATTC+TGG 0.317571 6_2:-60642964 Msa0922340:three_prime_UTR
GCAGTTCCTAGGCCTATTAT+TGG 0.318436 6_2:+60644748 None:intergenic
CCTGAGTTTAACAACACTTC+TGG 0.338648 6_2:+60648649 None:intergenic
TTGGGGTTCTAATGCTGTTA+TGG 0.341183 6_2:-60643906 Msa0922340:CDS
CTTTACAAAATATGCATGAT+TGG 0.345055 6_2:+60648725 None:intergenic
GAAACTGAACCAAGAAGAAT+TGG 0.348726 6_2:-60643338 Msa0922340:CDS
TGATCATGAGTTGATATATA+TGG 0.356817 6_2:-60643091 Msa0922340:three_prime_UTR
TTCAGCAATGAATGAGATAA+TGG 0.359483 6_2:+60643119 None:intergenic
TATGGAGAATCCTATTCTTC+AGG 0.366943 6_2:-60643888 Msa0922340:CDS
GGGGAAAAGATGCCAATAAT+AGG 0.375376 6_2:-60644760 Msa0922340:CDS
AGGGAATTCTGCATGAATAA+AGG 0.386783 6_2:-60643974 Msa0922340:CDS
CAAGTCCTTGGAAGATTTGT+GGG 0.390805 6_2:-60643245 Msa0922340:CDS
GAAGTGAGAGCTTCATTTGA+TGG 0.392979 6_2:+60644712 None:intergenic
TCAGCAATTTCCTGAAGAAT+AGG 0.400823 6_2:+60643878 None:intergenic
GAAGCAAGAACATCATTTGA+TGG 0.416424 6_2:+60648580 None:intergenic
AAAATCTAGAAATATTTGAT+TGG 0.419720 6_2:-60643360 Msa0922340:CDS
TTTGTTGATGCAATCAAAGT+TGG 0.422988 6_2:-60648553 Msa0922340:CDS
ATAAATGATGAAGAGGTTGA+TGG 0.430206 6_2:+60642969 None:intergenic
GGACACAAAATGCCAGTCAT+AGG 0.432511 6_2:-60648628 Msa0922340:CDS
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6_2:-60643441 Msa0922340:intron
TTTAATGTGGTCTTAAGAGC+TGG 0.453099 6_2:+60648373 None:intergenic
ACAAGTCCTTGGAAGATTTG+TGG 0.453769 6_2:-60643246 Msa0922340:CDS
AAATGGACCTTACAAGTCCT+TGG 0.462810 6_2:-60643257 Msa0922340:CDS
AGCTTGGCCAAGAGGTTCTT+CGG 0.463692 6_2:+60644627 None:intergenic
CATCTATATAAAGTGGTTTG+TGG 0.464710 6_2:+60648763 None:intergenic
TCCACAATGCAGACTTTACA+AGG 0.467068 6_2:-60643299 Msa0922340:CDS
GAGGAGTTGTAGCAGTTCCT+AGG 0.470932 6_2:+60644737 None:intergenic
CAAGACATAGCAGCTGCAAA+AGG 0.471565 6_2:-60646199 Msa0922340:CDS
AGCATCAGTGCACCATAGCT+TGG 0.473444 6_2:+60644546 None:intergenic
TCCTCTACTTGACTAAATCT+AGG 0.475410 6_2:+60642894 None:intergenic
TAGAAAGAAGAGTGTAGCTC+AGG 0.477815 6_2:-60643852 Msa0922340:intron
AGAGCTTCATTTGATGGAAG+AGG 0.479484 6_2:+60644718 None:intergenic
GGCACTTCATCTATATAAAG+TGG 0.492167 6_2:+60648756 None:intergenic
AGACAGAAGCAGAATCGAAA+TGG 0.496929 6_2:+60648524 None:intergenic
TGTGTGTGCATGGTCACCAT+TGG 0.497595 6_2:-60643945 Msa0922340:CDS
AAATATGCATGATTGGCAAT+TGG 0.499219 6_2:+60648732 None:intergenic
GTGTGTGCATGGTCACCATT+GGG 0.511118 6_2:-60643944 Msa0922340:CDS
AAATCTTCCAAGGACTTGTA+AGG 0.513155 6_2:+60643250 None:intergenic
AGGTAGAAATGAATCCATCT+TGG 0.519132 6_2:-60644012 Msa0922340:CDS
TATGGAACAGAAGAAGCTAT+AGG 0.520405 6_2:-60648502 Msa0922340:CDS
AGAGAACAATGCTTGCTTGA+GGG 0.524372 6_2:+60644489 None:intergenic
AGAACAAAGAAAAGCATGGC+AGG 0.525142 6_2:-60648682 Msa0922340:exon
AAGATGCCAATAATAGGCCT+AGG 0.525430 6_2:-60644754 Msa0922340:CDS
TAAACAAATTACAATGATCA+AGG 0.527972 6_2:+60642857 None:intergenic
AACCAGAATAAATGATGAAG+AGG 0.530460 6_2:+60642962 None:intergenic
TTTGTGGTGATATGTGGTGA+TGG 0.533465 6_2:+60648779 None:intergenic
AAAATGCCAGTCATAGGAAT+GGG 0.533740 6_2:-60648622 Msa0922340:CDS
TCAATACAAGATCTTGCTCA+AGG 0.538617 6_2:+60643214 None:intergenic
TCCTAGATTTAGTCAAGTAG+AGG 0.541538 6_2:-60642895 Msa0922340:three_prime_UTR
CTTGGCAGCAAGGAAAACTC+AGG 0.549272 6_2:-60643994 Msa0922340:CDS
TATGGTACCGAAGAACCTCT+TGG 0.552223 6_2:-60644634 Msa0922340:CDS
GTGTCAAAAGCTTTAGAGCT+CGG 0.554884 6_2:-60644604 Msa0922340:CDS
CCAGAAGTGTTGTTAAACTC+AGG 0.555434 6_2:-60648649 Msa0922340:CDS
GTGGCAAAAGCTTTAGAAGA+AGG 0.556305 6_2:-60648472 Msa0922340:CDS
CAAAATGCCAGTCATAGGAA+TGG 0.558036 6_2:-60648623 Msa0922340:CDS
TCACCATGACCTTGTTCTCA+AGG 0.559342 6_2:-60644524 Msa0922340:CDS
AAGACATAGCAGCTGCAAAA+GGG 0.559376 6_2:-60646198 Msa0922340:CDS
GGTTATAGCTTACTTTAATG+TGG 0.560210 6_2:+60648360 None:intergenic
ATGAATCCATCTTGGCAGCA+AGG 0.561015 6_2:-60644004 Msa0922340:CDS
TAATCTGCATCAGTGTTCCA+TGG 0.566258 6_2:+60648409 None:intergenic
GAAGTTCCCATTCCTATGAC+TGG 0.576432 6_2:+60648616 None:intergenic
AATGTCTGTAACCAATGTCA+AGG 0.577476 6_2:+60644674 None:intergenic
TTGGTTGATGCCCTTGACAT+TGG 0.578089 6_2:-60644685 Msa0922340:CDS
AAAAGGGAAGACTACAGCTC+AGG 0.578206 6_2:-60646182 Msa0922340:intron
TTGTGGTGATATGTGGTGAT+GGG 0.580324 6_2:+60648780 None:intergenic
AACAAGAACAAAGAAAAGCA+TGG 0.582770 6_2:-60648686 Msa0922340:exon
GTGTTTGTGCAAGATAAAGA+AGG 0.586460 6_2:+60643153 None:intergenic
GAACAATGCTTGCTTGAGGG+TGG 0.589137 6_2:+60644492 None:intergenic
TGAAAAGCTTCAACAAAGAG+AGG 0.595864 6_2:-60643390 Msa0922340:CDS
ACCATCCCACAAATCTTCCA+AGG 0.600190 6_2:+60643240 None:intergenic
CAATACAAGATCTTGCTCAA+GGG 0.600515 6_2:+60643215 None:intergenic
GAGAGAACAATGCTTGCTTG+AGG 0.603868 6_2:+60644488 None:intergenic
ATGTCTGTAACCAATGTCAA+GGG 0.608239 6_2:+60644675 None:intergenic
AGAAGCTATAGGCATGGCTG+TGG 0.608547 6_2:-60648491 Msa0922340:CDS
TTGGGGTTCAGGAGCCGTCG+TGG 0.612250 6_2:-60646236 Msa0922340:intron
AAGTGGTTTGTGGTGATATG+TGG 0.614573 6_2:+60648773 None:intergenic
AAGGAATTCATGTGTGTGCA+TGG 0.617297 6_2:-60643955 Msa0922340:CDS
TTTGACACAGCTTGGCCAAG+AGG 0.617936 6_2:+60644619 None:intergenic
AATACTTTGTATGCTCCCAA+TGG 0.618795 6_2:+60643929 None:intergenic
TCCTTGGAAGATTTGTGGGA+TGG 0.619696 6_2:-60643241 Msa0922340:CDS
TCTAGCTACTCAAATTCACA+TGG 0.620367 6_2:+60642920 None:intergenic
TGGATGCTATGGAAACAACT+TGG 0.620963 6_2:-60643002 Msa0922340:three_prime_UTR
GCCTTGTAAAGTCTGCATTG+TGG 0.628195 6_2:+60643298 None:intergenic
TATGCATGATTGGCAATTGG+TGG 0.628915 6_2:+60648735 None:intergenic
TATTCTTCAGGAAATTGCTG+AGG 0.632039 6_2:-60643876 Msa0922340:CDS
AACAGAAGAAGCTATAGGCA+TGG 0.636370 6_2:-60648497 Msa0922340:CDS
GAGCCTTGAGAACAAGGTCA+TGG 0.636860 6_2:+60644521 None:intergenic
CTAAGATGGATACATGAGCA+AGG 0.646695 6_2:-60643427 Msa0922340:CDS
AAGAATTTGATTCTCCACGA+CGG 0.647872 6_2:+60646222 None:intergenic
TTGGCAGCAAGGAAAACTCA+GGG 0.649378 6_2:-60643993 Msa0922340:CDS
TAAGATGGATACATGAGCAA+GGG 0.664827 6_2:-60643426 Msa0922340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTCTAATATTTGATT+TGG - chr6_2:60644973-60644992 Msa0922340:intron 10.0%
!! TTATAAAACATGTTTATAAA+TGG - chr6_2:60645465-60645484 Msa0922340:intron 10.0%
!! AGAAAAAATGTATATTTGAA+AGG + chr6_2:60643411-60643430 None:intergenic 15.0%
!!! AATATACATTTTTTCTCTAT+TGG - chr6_2:60643415-60643434 Msa0922340:CDS 15.0%
!! GTCATATATTTATTTGAAAA+CGG + chr6_2:60643559-60643578 None:intergenic 15.0%
!! ATAGTAAATGGTTAAATATA+GGG - chr6_2:60643727-60643746 Msa0922340:intron 15.0%
!!! ATTTTGTGAATATTTCAAAA+TGG + chr6_2:60643783-60643802 None:intergenic 15.0%
!!! AACTTTTTTACAATAACTAA+AGG - chr6_2:60643967-60643986 Msa0922340:CDS 15.0%
!! AACATAAAATCTTATATCAA+AGG - chr6_2:60644184-60644203 Msa0922340:intron 15.0%
!! AGACAAAAAAAGTAAATTAA+CGG - chr6_2:60644369-60644388 Msa0922340:intron 15.0%
!!! AAGATATTTTTTTTATTCTC+AGG - chr6_2:60646035-60646054 Msa0922340:intron 15.0%
!! GTTATTTAGTATTTATATAC+TGG + chr6_2:60646322-60646341 None:intergenic 15.0%
!! AAAATCTAGAAATATTTGAT+TGG - chr6_2:60648254-60648273 Msa0922340:intron 15.0%
!! GAATGAGTTTATAGATTTAT+AGG + chr6_2:60643278-60643297 None:intergenic 20.0%
!!! AGATCAATTCTAAAGTAAAA+AGG + chr6_2:60643471-60643490 None:intergenic 20.0%
!! ATATTAAGTGGATAAACTTA+GGG - chr6_2:60643662-60643681 Msa0922340:intron 20.0%
!! ACAGTAAGTTGTTAAAATAT+GGG - chr6_2:60643694-60643713 Msa0922340:intron 20.0%
!! GATAGTAAATGGTTAAATAT+AGG - chr6_2:60643726-60643745 Msa0922340:intron 20.0%
!!! TTTGAAATATTCACAAAATC+TGG - chr6_2:60643784-60643803 Msa0922340:intron 20.0%
!! TTGAAATATTCACAAAATCT+GGG - chr6_2:60643785-60643804 Msa0922340:intron 20.0%
!!! AAAAAGTTGTTTTAAATCCA+AGG + chr6_2:60643955-60643974 None:intergenic 20.0%
!! TGAAATTTGGTATATTTACA+TGG - chr6_2:60643990-60644009 Msa0922340:CDS 20.0%
!! TATAAGAAAGTTCTTTCTAT+TGG - chr6_2:60644089-60644108 Msa0922340:intron 20.0%
!! GACAAAAAAAGTAAATTAAC+GGG - chr6_2:60644370-60644389 Msa0922340:intron 20.0%
!!! CTATTTTTTAACTGATAACT+AGG + chr6_2:60645026-60645045 None:intergenic 20.0%
!! TCAGTTAAAAAATAGCAATT+TGG - chr6_2:60645031-60645050 Msa0922340:intron 20.0%
!!! CACAAATTTGCTATTTTTTT+AGG + chr6_2:60645062-60645081 None:intergenic 20.0%
!!! TTTTTTTGTAAAGATAGTTC+CGG - chr6_2:60645132-60645151 Msa0922340:intron 20.0%
!!! GTTAACTTCAATTCTTTTTT+AGG - chr6_2:60645252-60645271 Msa0922340:intron 20.0%
!!! AAAATATCTTTATTTGGAGT+TGG + chr6_2:60646025-60646044 None:intergenic 20.0%
!!! TTATGGTTTTATTGACTATT+TGG + chr6_2:60646608-60646627 None:intergenic 20.0%
!! TTTATTTATGCAACACATTA+AGG - chr6_2:60646695-60646714 Msa0922340:intron 20.0%
!!! AATTCTGTATCATTTTTTGT+TGG - chr6_2:60647185-60647204 Msa0922340:intron 20.0%
!!! ATTTTTTGTTGGAATTGTTT+AGG - chr6_2:60647196-60647215 Msa0922340:intron 20.0%
!! TCATTAACCAATCAATATTA+TGG - chr6_2:60647505-60647524 Msa0922340:intron 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - chr6_2:60648340-60648359 Msa0922340:intron 20.0%
!! TAAACAAATTACAATGATCA+AGG + chr6_2:60648760-60648779 None:intergenic 20.0%
! CTTTACAAAATATGCATGAT+TGG + chr6_2:60642892-60642911 None:intergenic 25.0%
! TGAAAGGAAAAAAAACTACA+GGG + chr6_2:60643395-60643414 None:intergenic 25.0%
! TTGAAAGGAAAAAAAACTAC+AGG + chr6_2:60643396-60643415 None:intergenic 25.0%
! GAATTGATCTCTATAATATG+CGG - chr6_2:60643481-60643500 Msa0922340:intron 25.0%
! AGGACTAAATTGATATTAAG+TGG - chr6_2:60643650-60643669 Msa0922340:intron 25.0%
! GATATTAAGTGGATAAACTT+AGG - chr6_2:60643661-60643680 Msa0922340:intron 25.0%
! GACAGTAAGTTGTTAAAATA+TGG - chr6_2:60643693-60643712 Msa0922340:intron 25.0%
! TCAAGAGTTTAATAGAATCA+AGG - chr6_2:60643756-60643775 Msa0922340:intron 25.0%
! TATTACGCAAATATTACATG+CGG - chr6_2:60643871-60643890 Msa0922340:CDS 25.0%
!! TTCAAAGGATCAAATTTTAC+AGG - chr6_2:60643903-60643922 Msa0922340:CDS 25.0%
!! CAAAAAAGTGTATATTTCCT+TGG - chr6_2:60643935-60643954 Msa0922340:CDS 25.0%
! CAATAACTAAAGGTGAAATT+TGG - chr6_2:60643977-60643996 Msa0922340:CDS 25.0%
! CTTATACAAACATTGAAAAC+AGG + chr6_2:60644075-60644094 None:intergenic 25.0%
! TCTTGTACAAATCCTTAAAA+AGG - chr6_2:60644117-60644136 Msa0922340:intron 25.0%
! CTTGTACAAATCCTTAAAAA+GGG - chr6_2:60644118-60644137 Msa0922340:intron 25.0%
! TTGTACAAATCCTTAAAAAG+GGG - chr6_2:60644119-60644138 Msa0922340:intron 25.0%
!! TTCAATTTTTCCCCTTTTTA+AGG + chr6_2:60644132-60644151 None:intergenic 25.0%
! AAGGATTTAAGGAACAATAA+TGG + chr6_2:60644421-60644440 None:intergenic 25.0%
! TCTATTGGTATATGCAATTA+TGG - chr6_2:60644636-60644655 Msa0922340:CDS 25.0%
!! AACTTTTTGAATTCGTGTTT+AGG - chr6_2:60644773-60644792 Msa0922340:intron 25.0%
! AATAGCAAATTTGTGCAATT+CGG - chr6_2:60645067-60645086 Msa0922340:intron 25.0%
! TTTAATGGTTCATATGAAAC+TGG + chr6_2:60645194-60645213 None:intergenic 25.0%
! CATATGAACCATTAAAAGTT+CGG - chr6_2:60645198-60645217 Msa0922340:intron 25.0%
!! AAATTGAACCGAACTTTTAA+TGG + chr6_2:60645209-60645228 None:intergenic 25.0%
!! ATTTTATCGAACTGTTATGA+CGG - chr6_2:60645225-60645244 Msa0922340:intron 25.0%
!!! AACTTCAATTCTTTTTTAGG+TGG - chr6_2:60645255-60645274 Msa0922340:intron 25.0%
! TATTAGTTCATGTCATATGA+AGG - chr6_2:60645574-60645593 Msa0922340:intron 25.0%
! CACATTATGATTTCAATTTC+AGG - chr6_2:60645598-60645617 Msa0922340:intron 25.0%
! GCTCAAAATCAAATATTTCA+AGG + chr6_2:60645700-60645719 None:intergenic 25.0%
!! TATTTTCCTTCAACATAGTT+AGG + chr6_2:60645863-60645882 None:intergenic 25.0%
! AAGAGATTTAAACATCATTC+CGG - chr6_2:60646235-60646254 Msa0922340:intron 25.0%
!!! TATCGTTCACAAATTTTTTG+AGG + chr6_2:60646298-60646317 None:intergenic 25.0%
!! AAATGCTAATCAAGTTTTCT+AGG - chr6_2:60646360-60646379 Msa0922340:intron 25.0%
!!! CTAGGTTACTATTTGTTTTT+TGG - chr6_2:60646378-60646397 Msa0922340:intron 25.0%
!!! TTGTTTTTTGGAAACAAGAA+AGG - chr6_2:60646390-60646409 Msa0922340:intron 25.0%
! AGGAATACACAATATTTATG+TGG - chr6_2:60646410-60646429 Msa0922340:intron 25.0%
! ACATTATTAAGAACATGATG+TGG - chr6_2:60646455-60646474 Msa0922340:intron 25.0%
!!! TGTGTTTTTATTAAGGTTAG+TGG + chr6_2:60646506-60646525 None:intergenic 25.0%
! TGAACTAACACTAGAAAATA+TGG - chr6_2:60646796-60646815 Msa0922340:intron 25.0%
!! ATATTGATTGGTTAATGACT+CGG + chr6_2:60647503-60647522 None:intergenic 25.0%
! GTATTCTCCATAATATTGAT+TGG + chr6_2:60647515-60647534 None:intergenic 25.0%
!!! ATGGAGAATACAAAGTATTT+TGG - chr6_2:60647524-60647543 Msa0922340:intron 25.0%
!!! TGGAGAATACAAAGTATTTT+GGG - chr6_2:60647525-60647544 Msa0922340:intron 25.0%
! TGTTATGAAATTCACTCAAT+TGG - chr6_2:60647556-60647575 Msa0922340:intron 25.0%
!!! GGTTTTAGAACAATTTGTTT+AGG + chr6_2:60647843-60647862 None:intergenic 25.0%
! AACCTTAAAATGCTAGATAA+AGG - chr6_2:60647859-60647878 Msa0922340:intron 25.0%
! ACCTTAAAATGCTAGATAAA+GGG - chr6_2:60647860-60647879 Msa0922340:intron 25.0%
!! ACTTATGCATAAGTACTTTT+AGG - chr6_2:60648081-60648100 Msa0922340:intron 25.0%
!!! TGATCATGAGTTGATATATA+TGG - chr6_2:60648523-60648542 Msa0922340:CDS 25.0%
CATCTATATAAAGTGGTTTG+TGG + chr6_2:60642854-60642873 None:intergenic 30.0%
AAATATGCATGATTGGCAAT+TGG + chr6_2:60642885-60642904 None:intergenic 30.0%
AACAAGAACAAAGAAAAGCA+TGG - chr6_2:60642928-60642947 Msa0922340:three_prime_UTR 30.0%
TTTGTTGATGCAATCAAAGT+TGG - chr6_2:60643061-60643080 Msa0922340:three_prime_UTR 30.0%
GGTTATAGCTTACTTTAATG+TGG + chr6_2:60643257-60643276 None:intergenic 30.0%
TACAATGTCAGAGACTAATT+TGG + chr6_2:60643534-60643553 None:intergenic 30.0%
! AAATTAGTCTCTGACATTGT+AGG - chr6_2:60643533-60643552 Msa0922340:intron 30.0%
AGTCTTTCAAAGATTATGTG+AGG - chr6_2:60643630-60643649 Msa0922340:intron 30.0%
AGTTGTTAAAATATGGGAAC+TGG - chr6_2:60643700-60643719 Msa0922340:intron 30.0%
!! GACATCGATTTAAAACAATG+TGG + chr6_2:60644053-60644072 None:intergenic 30.0%
AGGGGAAAAATTGAAATCAA+TGG - chr6_2:60644137-60644156 Msa0922340:intron 30.0%
GGGGAAAAATTGAAATCAAT+GGG - chr6_2:60644138-60644157 Msa0922340:intron 30.0%
GACAACTTTGTAAACAAATG+TGG - chr6_2:60644160-60644179 Msa0922340:intron 30.0%
! GATTTTACCAAACAATTCGT+CGG + chr6_2:60644249-60644268 None:intergenic 30.0%
! GGTTTCTTTTCCCTAAAAAT+TGG - chr6_2:60644339-60644358 Msa0922340:intron 30.0%
! TTCTTTTCCCTAAAAATTGG+AGG - chr6_2:60644342-60644361 Msa0922340:intron 30.0%
! TCTCAATCCTCCAATTTTTA+GGG + chr6_2:60644352-60644371 None:intergenic 30.0%
AGAAGTTACACAAGGATTTA+AGG + chr6_2:60644432-60644451 None:intergenic 30.0%
TTGTACATAGAAGTTACACA+AGG + chr6_2:60644440-60644459 None:intergenic 30.0%
! TACAATGTTGTTTAGAAAGC+TGG - chr6_2:60644455-60644474 Msa0922340:intron 30.0%
! ACAATGTTGTTTAGAAAGCT+GGG - chr6_2:60644456-60644475 Msa0922340:intron 30.0%
TGGATCTTTATCTGATTCAT+TGG - chr6_2:60644490-60644509 Msa0922340:CDS 30.0%
CTTCTTTGGTAAATATGACA+GGG + chr6_2:60644545-60644564 None:intergenic 30.0%
TCTTCTTTGGTAAATATGAC+AGG + chr6_2:60644546-60644565 None:intergenic 30.0%
AAAGGGAAGTAAATCTTCTT+TGG + chr6_2:60644559-60644578 None:intergenic 30.0%
TTACTTCCCTTTGATATAGA+AGG - chr6_2:60644567-60644586 Msa0922340:CDS 30.0%
TACTTCCCTTTGATATAGAA+GGG - chr6_2:60644568-60644587 Msa0922340:CDS 30.0%
!! ATGGAAGAGTGTTATAAGTT+AGG - chr6_2:60644603-60644622 Msa0922340:CDS 30.0%
!!! CAAGAGTTTAGTCAGTTTTT+TGG + chr6_2:60644664-60644683 None:intergenic 30.0%
CAAAAAACTGACTAAACTCT+TGG - chr6_2:60644662-60644681 Msa0922340:CDS 30.0%
TTCGTACACTGTTAGTAAAA+TGG - chr6_2:60644744-60644763 Msa0922340:CDS 30.0%
GTGAACTATTCATCACAATT+TGG - chr6_2:60644910-60644929 Msa0922340:intron 30.0%
GGTTATGTAGATGATAAAAG+TGG - chr6_2:60645486-60645505 Msa0922340:intron 30.0%
! AGAAATGTCGTAACTTGTAA+GGG + chr6_2:60645528-60645547 None:intergenic 30.0%
! AATGGCTAAAAGCTTTAACA+AGG - chr6_2:60645658-60645677 Msa0922340:intron 30.0%
TCACATTCTTGTTCAATTCA+AGG + chr6_2:60645951-60645970 None:intergenic 30.0%
AGAGATTTAAACATCATTCC+GGG - chr6_2:60646236-60646255 Msa0922340:intron 30.0%
!! GGTCACTTGTGTTTTTATTA+AGG + chr6_2:60646513-60646532 None:intergenic 30.0%
! TGCCTTACATTTTTCATATC+AGG - chr6_2:60646559-60646578 Msa0922340:intron 30.0%
! GCCTTACATTTTTCATATCA+GGG - chr6_2:60646560-60646579 Msa0922340:intron 30.0%
TCCCTGATATGAAAAATGTA+AGG + chr6_2:60646564-60646583 None:intergenic 30.0%
! ATGCAGGAAAGCTTTTATTA+TGG + chr6_2:60646625-60646644 None:intergenic 30.0%
ATAAAAGCTTTCCTGCATAT+TGG - chr6_2:60646627-60646646 Msa0922340:intron 30.0%
!! CCATTGATTCTTAGATATGA+TGG + chr6_2:60646771-60646790 None:intergenic 30.0%
CCATCATATCTAAGAATCAA+TGG - chr6_2:60646768-60646787 Msa0922340:intron 30.0%
ATGAGGTGATACTAAATTCA+GGG - chr6_2:60646834-60646853 Msa0922340:intron 30.0%
TTTGATACAGCTTCTATCTA+TGG - chr6_2:60646962-60646981 Msa0922340:intron 30.0%
! TTTTCATTACTTCCAAGCTA+TGG - chr6_2:60647056-60647075 Msa0922340:intron 30.0%
!! CTCTCGAACTTTTTCTTTTA+AGG - chr6_2:60647144-60647163 Msa0922340:intron 30.0%
AGATTGAAAGAAGATGTTGA+AGG - chr6_2:60647267-60647286 Msa0922340:intron 30.0%
ATGGAAGATTGTTACAGATT+AGG - chr6_2:60647348-60647367 Msa0922340:intron 30.0%
GTTACTAACACCAATAGATT+TGG + chr6_2:60647379-60647398 None:intergenic 30.0%
!! TCTATTGGTGTTAGTAACTT+TGG - chr6_2:60647381-60647400 Msa0922340:intron 30.0%
! TGATTTTGTCCAATTCTTCT+TGG + chr6_2:60648288-60648307 None:intergenic 30.0%
TTCAGCAATGAATGAGATAA+TGG + chr6_2:60648498-60648517 None:intergenic 30.0%
ATAAATGATGAAGAGGTTGA+TGG + chr6_2:60648648-60648667 None:intergenic 30.0%
AACCTCTTCATCATTTATTC+TGG - chr6_2:60648650-60648669 Msa0922340:CDS 30.0%
AACCAGAATAAATGATGAAG+AGG + chr6_2:60648655-60648674 None:intergenic 30.0%
GGCACTTCATCTATATAAAG+TGG + chr6_2:60642861-60642880 None:intergenic 35.0%
AAAATGCCAGTCATAGGAAT+GGG - chr6_2:60642992-60643011 Msa0922340:three_prime_UTR 35.0%
GAAGCAAGAACATCATTTGA+TGG + chr6_2:60643037-60643056 None:intergenic 35.0%
TATGGAACAGAAGAAGCTAT+AGG - chr6_2:60643112-60643131 Msa0922340:three_prime_UTR 35.0%
! TTTTCATCACTTCAAAGCCA+TGG - chr6_2:60643188-60643207 Msa0922340:three_prime_UTR 35.0%
! TTTAATGTGGTCTTAAGAGC+TGG + chr6_2:60643244-60643263 None:intergenic 35.0%
AATGTCAGAGACTAATTTGG+TGG + chr6_2:60643531-60643550 None:intergenic 35.0%
! GGAACTGGATTGATAGTAAA+TGG - chr6_2:60643715-60643734 Msa0922340:intron 35.0%
AGTCCTTGTATAGTCTGTAT+GGG + chr6_2:60643843-60643862 None:intergenic 35.0%
TAGTCCTTGTATAGTCTGTA+TGG + chr6_2:60643844-60643863 None:intergenic 35.0%
TATCAAAGGTTTGTGACCAA+TGG - chr6_2:60644198-60644217 Msa0922340:intron 35.0%
! AATCCGAGTTCAAACTTGTT+TGG - chr6_2:60644265-60644284 Msa0922340:intron 35.0%
GTTCCAAACAAGTTTGAACT+CGG + chr6_2:60644271-60644290 None:intergenic 35.0%
GTAATTCAGATTTCCGTCAA+GGG + chr6_2:60644316-60644335 None:intergenic 35.0%
! GTCTCAATCCTCCAATTTTT+AGG + chr6_2:60644353-60644372 None:intergenic 35.0%
CATGTCCCTTCTATATCAAA+GGG + chr6_2:60644576-60644595 None:intergenic 35.0%
TTAGGCTTAGCAAAGTCTAT+TGG - chr6_2:60644621-60644640 Msa0922340:CDS 35.0%
AGAATAAAGTTGAGCTGTGA+CGG - chr6_2:60644841-60644860 Msa0922340:intron 35.0%
CGGTTTACAAAGAATCAGTT+TGG - chr6_2:60645087-60645106 Msa0922340:intron 35.0%
TTGTAAAGATAGTTCCGGTT+CGG - chr6_2:60645137-60645156 Msa0922340:intron 35.0%
!!! TGTTTAGTGTACTGGTTTTG+TGG + chr6_2:60645165-60645184 None:intergenic 35.0%
GGTATAACTGTTTAGTGTAC+TGG + chr6_2:60645173-60645192 None:intergenic 35.0%
AAGGAATTCATGTTAGTGCT+TGG - chr6_2:60645329-60645348 Msa0922340:intron 35.0%
TTGGAGCATATAAGGTAACT+TGG - chr6_2:60645359-60645378 Msa0922340:intron 35.0%
TGGAGCATATAAGGTAACTT+GGG - chr6_2:60645360-60645379 Msa0922340:intron 35.0%
AAGAATTTGATTCTCCACGA+CGG + chr6_2:60645395-60645414 None:intergenic 35.0%
! CAGAAATGTCGTAACTTGTA+AGG + chr6_2:60645529-60645548 None:intergenic 35.0%
GATATGTGGCTATCTGAAAA+TGG - chr6_2:60645779-60645798 Msa0922340:intron 35.0%
CAAGACCTTAGAAGAACTTT+GGG - chr6_2:60645808-60645827 Msa0922340:intron 35.0%
TCAACATAGTTAGGACTATG+AGG + chr6_2:60645854-60645873 None:intergenic 35.0%
CATAGTCCTAACTATGTTGA+AGG - chr6_2:60645854-60645873 Msa0922340:intron 35.0%
! AAGATGATTGTCGTGTTTTC+TGG - chr6_2:60646069-60646088 Msa0922340:intron 35.0%
!! TCGTGTTTTCTGGTATAAAC+TGG - chr6_2:60646079-60646098 Msa0922340:intron 35.0%
!! CGTGTTTTCTGGTATAAACT+GGG - chr6_2:60646080-60646099 Msa0922340:intron 35.0%
!!! TTTTTGAGGTGTTAAGCTAG+TGG + chr6_2:60646284-60646303 None:intergenic 35.0%
! TGTTTCAAGTGTTTGGTTGT+TGG + chr6_2:60646534-60646553 None:intergenic 35.0%
! CAGTGAATGTTTCAAGTGTT+TGG + chr6_2:60646541-60646560 None:intergenic 35.0%
TAAAAGACAGTCCAATATGC+AGG + chr6_2:60646641-60646660 None:intergenic 35.0%
! ACTGTCTTTTATGCAACCTA+AGG - chr6_2:60646650-60646669 Msa0922340:intron 35.0%
TTATGCAACACATTAAGGTG+TGG - chr6_2:60646700-60646719 Msa0922340:intron 35.0%
ACTTTGAGCTTGATTCTTTG+AGG + chr6_2:60646742-60646761 None:intergenic 35.0%
GGAAGCAAATAAACTTCATG+AGG - chr6_2:60646817-60646836 Msa0922340:intron 35.0%
CATGAGGTGATACTAAATTC+AGG - chr6_2:60646833-60646852 Msa0922340:intron 35.0%
TGAGGTGATACTAAATTCAG+GGG - chr6_2:60646835-60646854 Msa0922340:intron 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - chr6_2:60646910-60646929 Msa0922340:intron 35.0%
ATGTCTGTAACCAATGTCAA+GGG + chr6_2:60646942-60646961 None:intergenic 35.0%
AATGTCTGTAACCAATGTCA+AGG + chr6_2:60646943-60646962 None:intergenic 35.0%
TGGAATTGTTTAGGAATCTG+AGG - chr6_2:60647205-60647224 Msa0922340:intron 35.0%
! ATTGTTTAGGAATCTGAGGT+TGG - chr6_2:60647209-60647228 Msa0922340:intron 35.0%
ACATCTTCTTTCAATCTCAC+TGG + chr6_2:60647264-60647283 None:intergenic 35.0%
CATGTTCCTTTGATGTCAAA+GGG + chr6_2:60647321-60647340 None:intergenic 35.0%
TTAGGCTTAGCCAAATCTAT+TGG - chr6_2:60647366-60647385 Msa0922340:intron 35.0%
CTGATTAACTGCAGGAAAAA+TGG + chr6_2:60647442-60647461 None:intergenic 35.0%
! CATTTTTCCTGCAGTTAATC+AGG - chr6_2:60647440-60647459 Msa0922340:intron 35.0%
TCTTATACCTGATTAACTGC+AGG + chr6_2:60647450-60647469 None:intergenic 35.0%
! TAATGACTCGGACAAATACT+CGG + chr6_2:60647491-60647510 None:intergenic 35.0%
! CATGTCGATTATCTCGATTT+AGG - chr6_2:60647582-60647601 Msa0922340:intron 35.0%
AGGTAGAAATGAATCCATCT+TGG - chr6_2:60647602-60647621 Msa0922340:intron 35.0%
AGGGAATTCTGCATGAATAA+AGG - chr6_2:60647640-60647659 Msa0922340:intron 35.0%
AATACTTTGTATGCTCCCAA+TGG + chr6_2:60647688-60647707 None:intergenic 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - chr6_2:60647689-60647708 Msa0922340:intron 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - chr6_2:60647690-60647709 Msa0922340:intron 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - chr6_2:60647691-60647710 Msa0922340:intron 35.0%
TATGGAGAATCCTATTCTTC+AGG - chr6_2:60647726-60647745 Msa0922340:intron 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + chr6_2:60647739-60647758 None:intergenic 35.0%
TATTCTTCAGGAAATTGCTG+AGG - chr6_2:60647738-60647757 Msa0922340:intron 35.0%
! GCCCTTTATCTAGCATTTTA+AGG + chr6_2:60647864-60647883 None:intergenic 35.0%
TTGCACAAAGTAATCCAAAC+AGG + chr6_2:60647886-60647905 None:intergenic 35.0%
CTACGAACATAAATACTTCG+AGG - chr6_2:60647911-60647930 Msa0922340:intron 35.0%
TAAGATGGATACATGAGCAA+GGG - chr6_2:60648188-60648207 Msa0922340:intron 35.0%
TGAAAAGCTTCAACAAAGAG+AGG - chr6_2:60648224-60648243 Msa0922340:intron 35.0%
GAAACTGAACCAAGAAGAAT+TGG - chr6_2:60648276-60648295 Msa0922340:intron 35.0%
AAATCTTCCAAGGACTTGTA+AGG + chr6_2:60648367-60648386 None:intergenic 35.0%
CAATACAAGATCTTGCTCAA+GGG + chr6_2:60648402-60648421 None:intergenic 35.0%
TCAATACAAGATCTTGCTCA+AGG + chr6_2:60648403-60648422 None:intergenic 35.0%
GTGTTTGTGCAAGATAAAGA+AGG + chr6_2:60648464-60648483 None:intergenic 35.0%
!!! TTCTGAAACTGTTTTTCACG+TGG - chr6_2:60648589-60648608 Msa0922340:CDS 35.0%
TCTAGCTACTCAAATTCACA+TGG + chr6_2:60648697-60648716 None:intergenic 35.0%
TCCTAGATTTAGTCAAGTAG+AGG - chr6_2:60648719-60648738 Msa0922340:five_prime_UTR 35.0%
TCCTCTACTTGACTAAATCT+AGG + chr6_2:60648723-60648742 None:intergenic 35.0%
TTGTGGTGATATGTGGTGAT+GGG + chr6_2:60642837-60642856 None:intergenic 40.0%
TTTGTGGTGATATGTGGTGA+TGG + chr6_2:60642838-60642857 None:intergenic 40.0%
! AAGTGGTTTGTGGTGATATG+TGG + chr6_2:60642844-60642863 None:intergenic 40.0%
TATGCATGATTGGCAATTGG+TGG + chr6_2:60642882-60642901 None:intergenic 40.0%
! AGAACAAAGAAAAGCATGGC+AGG - chr6_2:60642932-60642951 Msa0922340:three_prime_UTR 40.0%
CCTGAGTTTAACAACACTTC+TGG + chr6_2:60642968-60642987 None:intergenic 40.0%
!! CCAGAAGTGTTGTTAAACTC+AGG - chr6_2:60642965-60642984 Msa0922340:three_prime_UTR 40.0%
CAAAATGCCAGTCATAGGAA+TGG - chr6_2:60642991-60643010 Msa0922340:three_prime_UTR 40.0%
AGACAGAAGCAGAATCGAAA+TGG + chr6_2:60643093-60643112 None:intergenic 40.0%
TTCGATTCTGCTTCTGTCTA+TGG - chr6_2:60643094-60643113 Msa0922340:three_prime_UTR 40.0%
AACAGAAGAAGCTATAGGCA+TGG - chr6_2:60643117-60643136 Msa0922340:three_prime_UTR 40.0%
!! GTGGCAAAAGCTTTAGAAGA+AGG - chr6_2:60643142-60643161 Msa0922340:three_prime_UTR 40.0%
TAATCTGCATCAGTGTTCCA+TGG + chr6_2:60643208-60643227 None:intergenic 40.0%
! ATGCGGACTGCTAATTTCAA+AGG - chr6_2:60643888-60643907 Msa0922340:CDS 40.0%
AACGATTTGAGCTCAACCAT+TGG + chr6_2:60644217-60644236 None:intergenic 40.0%
TGAGTATCCGACGAATTGTT+TGG - chr6_2:60644239-60644258 Msa0922340:intron 40.0%
TAGACTTTACCTACCCTTGA+CGG - chr6_2:60644300-60644319 Msa0922340:intron 40.0%
CGTAATTCAGATTTCCGTCA+AGG + chr6_2:60644317-60644336 None:intergenic 40.0%
GACGGAAATCTGAATTACGA+AGG - chr6_2:60644318-60644337 Msa0922340:intron 40.0%
GTTGTTTAGAAAGCTGGGAA+CGG - chr6_2:60644461-60644480 Msa0922340:intron 40.0%
AGATCATGTCTCAGTCTTAC+TGG + chr6_2:60644516-60644535 None:intergenic 40.0%
CCATGTCCCTTCTATATCAA+AGG + chr6_2:60644577-60644596 None:intergenic 40.0%
CCTTTGATATAGAAGGGACA+TGG - chr6_2:60644574-60644593 Msa0922340:CDS 40.0%
TACATACCTGATTCACTGCA+GGG + chr6_2:60644704-60644723 None:intergenic 40.0%
ATACATACCTGATTCACTGC+AGG + chr6_2:60644705-60644724 None:intergenic 40.0%
CGAACTAAACTGAATCAGTC+CGG - chr6_2:60644874-60644893 Msa0922340:intron 40.0%
! GAAACTGAGGGAATTTTGCA+AGG - chr6_2:60645303-60645322 Msa0922340:intron 40.0%
! AGGGAATTTTGCAAGGAGAA+AGG - chr6_2:60645310-60645329 Msa0922340:intron 40.0%
GGAGCATATAAGGTAACTTG+GGG - chr6_2:60645361-60645380 Msa0922340:intron 40.0%
TATAAGGTAACTTGGGGTTC+AGG - chr6_2:60645367-60645386 Msa0922340:intron 40.0%
AAGACATAGCAGCTGCAAAA+GGG - chr6_2:60645416-60645435 Msa0922340:intron 40.0%
!! AATTTCAGGTTGCACTCAGA+TGG - chr6_2:60645612-60645631 Msa0922340:intron 40.0%
!! ATTTCAGGTTGCACTCAGAT+GGG - chr6_2:60645613-60645632 Msa0922340:intron 40.0%
CCATTGCACTTGATCCTATT+TGG + chr6_2:60645643-60645662 None:intergenic 40.0%
CCAAATAGGATCAAGTGCAA+TGG - chr6_2:60645640-60645659 Msa0922340:intron 40.0%
GGCAATACTTAGGAGATATG+TGG - chr6_2:60645765-60645784 Msa0922340:intron 40.0%
GCAAGACCTTAGAAGAACTT+TGG - chr6_2:60645807-60645826 Msa0922340:intron 40.0%
! ACCTTAGAAGAACTTTGGGA+TGG - chr6_2:60645812-60645831 Msa0922340:intron 40.0%
TCCATCCCAAAGTTCTTCTA+AGG + chr6_2:60645816-60645835 None:intergenic 40.0%
TATGTGTAGCCTCAGTTATG+TGG - chr6_2:60645983-60646002 Msa0922340:intron 40.0%
TCACAAAGCAATCCTCTTGA+GGG + chr6_2:60646136-60646155 None:intergenic 40.0%
ATCACAAAGCAATCCTCTTG+AGG + chr6_2:60646137-60646156 None:intergenic 40.0%
! AGTTTGACTTTGTGAGTTCC+CGG + chr6_2:60646257-60646276 None:intergenic 40.0%
GGACCATGCATTTATCATCT+GGG - chr6_2:60646581-60646600 Msa0922340:intron 40.0%
GACCATGCATTTATCATCTG+GGG - chr6_2:60646582-60646601 Msa0922340:intron 40.0%
GGGGAAAAGATGCCAATAAT+AGG - chr6_2:60646854-60646873 Msa0922340:intron 40.0%
AAGATGCCAATAATAGGCCT+AGG - chr6_2:60646860-60646879 Msa0922340:intron 40.0%
AGAGCTTCATTTGATGGAAG+AGG + chr6_2:60646899-60646918 None:intergenic 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + chr6_2:60646905-60646924 None:intergenic 40.0%
! CTAAAGCTTTTGACACAGCT+TGG + chr6_2:60647006-60647025 None:intergenic 40.0%
!! GTGTCAAAAGCTTTAGAGCT+CGG - chr6_2:60647010-60647029 Msa0922340:intron 40.0%
!! TTTTGAGAGCCTTGAGAACA+AGG + chr6_2:60647102-60647121 None:intergenic 40.0%
AGAGAACAATGCTTGCTTGA+GGG + chr6_2:60647128-60647147 None:intergenic 40.0%
TGGATCTCTACTTGATTCAC+TGG - chr6_2:60647238-60647257 Msa0922340:intron 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - chr6_2:60647282-60647301 Msa0922340:intron 40.0%
! AGGCTTTAACTTCACAGGTA+AGG - chr6_2:60647287-60647306 Msa0922340:intron 40.0%
GTGATTCCCTTTGACATCAA+AGG - chr6_2:60647312-60647331 Msa0922340:intron 40.0%
CCATGTTCCTTTGATGTCAA+AGG + chr6_2:60647322-60647341 None:intergenic 40.0%
CCTTTGACATCAAAGGAACA+TGG - chr6_2:60647319-60647338 Msa0922340:intron 40.0%
CAAAGGAACATGGAAAGCTA+TGG - chr6_2:60647329-60647348 Msa0922340:intron 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - chr6_2:60647407-60647426 Msa0922340:intron 40.0%
! GGTTGCATTTTCCAAGAGTA+CGG + chr6_2:60647421-60647440 None:intergenic 40.0%
AAGGAATTCATGTGTGTGCA+TGG - chr6_2:60647659-60647678 Msa0922340:intron 40.0%
! TTGGGGTTCTAATGCTGTTA+TGG - chr6_2:60647708-60647727 Msa0922340:intron 40.0%
! TAGAAAGAAGAGTGTAGCTC+AGG - chr6_2:60647762-60647781 Msa0922340:intron 40.0%
TCTTGCAGATAGCACTAAGA+TGG - chr6_2:60648173-60648192 Msa0922340:intron 40.0%
CTAAGATGGATACATGAGCA+AGG - chr6_2:60648187-60648206 Msa0922340:intron 40.0%
TCCACAATGCAGACTTTACA+AGG - chr6_2:60648315-60648334 Msa0922340:intron 40.0%
AAATGGACCTTACAAGTCCT+TGG - chr6_2:60648357-60648376 Msa0922340:intron 40.0%
ACAAGTCCTTGGAAGATTTG+TGG - chr6_2:60648368-60648387 Msa0922340:intron 40.0%
CAAGTCCTTGGAAGATTTGT+GGG - chr6_2:60648369-60648388 Msa0922340:intron 40.0%
!! TGAAACTGTTTTTCACGTGG+TGG - chr6_2:60648592-60648611 Msa0922340:CDS 40.0%
TGGATGCTATGGAAACAACT+TGG - chr6_2:60648612-60648631 Msa0922340:CDS 40.0%
GGACACAAAATGCCAGTCAT+AGG - chr6_2:60642986-60643005 Msa0922340:three_prime_UTR 45.0%
GAAGTTCCCATTCCTATGAC+TGG + chr6_2:60643001-60643020 None:intergenic 45.0%
GCTCCCATACAGACTATACA+AGG - chr6_2:60643837-60643856 Msa0922340:intron 45.0%
TTCAGATTTCCGTCAAGGGT+AGG + chr6_2:60644312-60644331 None:intergenic 45.0%
AGAAGGGACATGGAAAGCAA+TGG - chr6_2:60644584-60644603 Msa0922340:CDS 45.0%
ACATACCTGATTCACTGCAG+GGG + chr6_2:60644703-60644722 None:intergenic 45.0%
! GTTCACGAACTGAGTTGAAC+CGG + chr6_2:60644896-60644915 None:intergenic 45.0%
AGGTGGAGATGAATCCTTCT+TGG - chr6_2:60645272-60645291 Msa0922340:intron 45.0%
TGAATCCTTCTTGGCAGCAA+TGG - chr6_2:60645281-60645300 Msa0922340:intron 45.0%
AGTTTCCATTGCTGCCAAGA+AGG + chr6_2:60645289-60645308 None:intergenic 45.0%
TTGGCAGCAATGGAAACTGA+GGG - chr6_2:60645291-60645310 Msa0922340:intron 45.0%
GTCAGCTCTTGGAGCATATA+AGG - chr6_2:60645351-60645370 Msa0922340:intron 45.0%
CAAGACATAGCAGCTGCAAA+AGG - chr6_2:60645415-60645434 Msa0922340:intron 45.0%
AAAAGGGAAGACTACAGCTC+AGG - chr6_2:60645432-60645451 Msa0922340:intron 45.0%
CTCAGATGGGTGTACCAAAT+AGG - chr6_2:60645626-60645645 Msa0922340:intron 45.0%
TTAAGCAGATTCCACAGCGA+AGG - chr6_2:60645744-60645763 Msa0922340:intron 45.0%
TATGCAGAGCCACATAACTG+AGG + chr6_2:60645995-60646014 None:intergenic 45.0%
GTCTTTGCAGTTGCGATTAG+AGG + chr6_2:60646109-60646128 None:intergenic 45.0%
GCAAAGACTAATCCCTCAAG+AGG - chr6_2:60646121-60646140 Msa0922340:intron 45.0%
GGGACCATGCATTTATCATC+TGG - chr6_2:60646580-60646599 Msa0922340:intron 45.0%
! GATGACACGTTTTACGCCTT+AGG + chr6_2:60646669-60646688 None:intergenic 45.0%
!! GAGCTTGATTCTTTGAGGTG+TGG + chr6_2:60646737-60646756 None:intergenic 45.0%
GCAGTTCCTAGGCCTATTAT+TGG + chr6_2:60646869-60646888 None:intergenic 45.0%
! TTGGTTGATGCCCTTGACAT+TGG - chr6_2:60646929-60646948 Msa0922340:intron 45.0%
! TATGGTACCGAAGAACCTCT+TGG - chr6_2:60646980-60646999 Msa0922340:intron 45.0%
TCACCATGACCTTGTTCTCA+AGG - chr6_2:60647090-60647109 Msa0922340:intron 45.0%
GAGAGAACAATGCTTGCTTG+AGG + chr6_2:60647129-60647148 None:intergenic 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - chr6_2:60647218-60647237 Msa0922340:intron 45.0%
ATGAATCCATCTTGGCAGCA+AGG - chr6_2:60647610-60647629 Msa0922340:intron 45.0%
! AGTTTTCCTTGCTGCCAAGA+TGG + chr6_2:60647619-60647638 None:intergenic 45.0%
TTGGCAGCAAGGAAAACTCA+GGG - chr6_2:60647621-60647640 Msa0922340:intron 45.0%
TGCTAGATAAAGGGCCTGTT+TGG - chr6_2:60647869-60647888 Msa0922340:intron 45.0%
GCCTTGTAAAGTCTGCATTG+TGG + chr6_2:60648319-60648338 None:intergenic 45.0%
TCCTTGGAAGATTTGTGGGA+TGG - chr6_2:60648373-60648392 Msa0922340:CDS 45.0%
ACCATCCCACAAATCTTCCA+AGG + chr6_2:60648377-60648396 None:intergenic 45.0%
!!! TTTTCACGTGGTGGATGCTA+TGG - chr6_2:60648601-60648620 Msa0922340:CDS 45.0%
!! ATAAAAAAAATATCTTTATT+TGG + chr6_2:60646031-60646050 None:intergenic 5.0%
!!! TAATTTTTTTAACAAAATAA+AGG - chr6_2:60646183-60646202 Msa0922340:CDS 5.0%
AGAAGCTATAGGCATGGCTG+TGG - chr6_2:60643123-60643142 Msa0922340:three_prime_UTR 50.0%
AAAGCTGGGAACGGAGTATG+TGG - chr6_2:60644470-60644489 Msa0922340:CDS 50.0%
!!! CTGGTTTTGTGGTTCCGAAC+CGG + chr6_2:60645154-60645173 None:intergenic 50.0%
CTTGGCAGCAATGGAAACTG+AGG - chr6_2:60645290-60645309 Msa0922340:intron 50.0%
GTTAGTGCTTGGTCAGCTCT+TGG - chr6_2:60645340-60645359 Msa0922340:intron 50.0%
! CCTAAGTATTGCCTTCGCTG+TGG + chr6_2:60645758-60645777 None:intergenic 50.0%
CCACAGCGAAGGCAATACTT+AGG - chr6_2:60645755-60645774 Msa0922340:intron 50.0%
GGCCCCAGATGATAAATGCA+TGG + chr6_2:60646587-60646606 None:intergenic 50.0%
GAGGAGTTGTAGCAGTTCCT+AGG + chr6_2:60646880-60646899 None:intergenic 50.0%
AGCTTGGCCAAGAGGTTCTT+CGG + chr6_2:60646990-60647009 None:intergenic 50.0%
TTTGACACAGCTTGGCCAAG+AGG + chr6_2:60646998-60647017 None:intergenic 50.0%
AGCATCAGTGCACCATAGCT+TGG + chr6_2:60647071-60647090 None:intergenic 50.0%
GAGCCTTGAGAACAAGGTCA+TGG + chr6_2:60647096-60647115 None:intergenic 50.0%
GAACAATGCTTGCTTGAGGG+TGG + chr6_2:60647125-60647144 None:intergenic 50.0%
CTTGGCAGCAAGGAAAACTC+AGG - chr6_2:60647620-60647639 Msa0922340:intron 50.0%
TGTGTGTGCATGGTCACCAT+TGG - chr6_2:60647669-60647688 Msa0922340:intron 50.0%
GTGTGTGCATGGTCACCATT+GGG - chr6_2:60647670-60647689 Msa0922340:intron 50.0%
GGCAGATTACGAGAGCTCAT+TGG - chr6_2:60647932-60647951 Msa0922340:intron 50.0%
CTGATTCACTGCAGGGGTGA+TGG + chr6_2:60644697-60644716 None:intergenic 55.0%
CATCACCCCTGCAGTGAATC+AGG - chr6_2:60644695-60644714 Msa0922340:CDS 55.0%
TTGGGGTTCAGGAGCCGTCG+TGG - chr6_2:60645378-60645397 Msa0922340:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 60642823 60648813 60642823 ID=Msa0922340;Name=Msa0922340
chr6_2 mRNA 60642823 60648813 60642823 ID=Msa0922340-mRNA-1;Parent=Msa0922340;Name=Msa0922340-mRNA-1;_AED=0.27;_eAED=0.27;_QI=124|0.25|0.6|1|0.5|0.6|5|408|366
chr6_2 exon 60642823 60643455 60642823 ID=Msa0922340-mRNA-1:exon:9338;Parent=Msa0922340-mRNA-1
chr6_2 exon 60643853 60644032 60643853 ID=Msa0922340-mRNA-1:exon:9337;Parent=Msa0922340-mRNA-1
chr6_2 exon 60644468 60644781 60644468 ID=Msa0922340-mRNA-1:exon:9336;Parent=Msa0922340-mRNA-1
chr6_2 exon 60646183 60646247 60646183 ID=Msa0922340-mRNA-1:exon:9335;Parent=Msa0922340-mRNA-1
chr6_2 exon 60648373 60648813 60648373 ID=Msa0922340-mRNA-1:exon:9334;Parent=Msa0922340-mRNA-1
chr6_2 five_prime_UTR 60648690 60648813 60648690 ID=Msa0922340-mRNA-1:five_prime_utr;Parent=Msa0922340-mRNA-1
chr6_2 CDS 60648373 60648689 60648373 ID=Msa0922340-mRNA-1:cds;Parent=Msa0922340-mRNA-1
chr6_2 CDS 60646183 60646247 60646183 ID=Msa0922340-mRNA-1:cds;Parent=Msa0922340-mRNA-1
chr6_2 CDS 60644468 60644781 60644468 ID=Msa0922340-mRNA-1:cds;Parent=Msa0922340-mRNA-1
chr6_2 CDS 60643853 60644032 60643853 ID=Msa0922340-mRNA-1:cds;Parent=Msa0922340-mRNA-1
chr6_2 CDS 60643231 60643455 60643231 ID=Msa0922340-mRNA-1:cds;Parent=Msa0922340-mRNA-1
chr6_2 three_prime_UTR 60642823 60643230 60642823 ID=Msa0922340-mRNA-1:three_prime_utr;Parent=Msa0922340-mRNA-1
Gene Sequence

>Msa0922340

ATGGCAGGAAACAAAATTCCAGAAGTGTTGTTAAACTCAGGACACAAAATGCCAGTCATAGGAATGGGAACTTCAGTAGACAATCGTCCATCAAATGATGTTCTTGCTTCAATCTTTGTTGATGCAATCAAAGTTGGTTATCGCCATTTCGATTCTGCTTCTGTCTATGGAACAGAAGAAGCTATAGGCATGGCTGTGGCAAAAGCTTTAGAAGAAGGTCTTATTAAGAGTAGAGATGAACTTTTCATCACTTCAAAGCCATGGAACACTGATGCAGATTATGAACTTATTGTTCCAGCTCTTAAGACCACATTAAAGAGCCGTCGTGGAGAATCAAATTCTTCAAGACATAGCAGCTGCAAAAGGGAAGACTACAGCTCAGGGGAAAAGATGCCAATAATAGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCCTTGACATTGGTTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAGAACCTCTTGGCCAAGCTGTGTCAAAAGCTTTAGAGCTCGGACTTATAAAACATCGTGATGAAGTTTTCATTACTTCCAAGCTATGGTGCACTGATGCTCACCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGCTGTAGAAATGAATCCATCTTGGCAGCAAGGAAAACTCAGGGAATTCTGCATGAATAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTTATGGAGAATCCTATTCTTCAGGAAATTGCTGAGGCTAGAAAGAAGAGTGTAGCTCAGATAGCACTAAGATGGATACATGAGCAAGGGACAAGTGTAATTGTGAAAAGCTTCAACAAAGAGAGGATGAAACAAAATCTAGAAATATTTGATTGGAAACTGAACCAAGAAGAATTGGACAAAATCAATAAGATTCCACAATGCAGACTTTACAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAGTCCTTGGAAGATTTGTGGGATGGTGACCCTTGA

Protein sequence

>Msa0922340

MAGNKIPEVLLNSGHKMPVIGMGTSVDNRPSNDVLASIFVDAIKVGYRHFDSASVYGTEEAIGMAVAKALEEGLIKSRDELFITSKPWNTDADYELIVPALKTTLKSRRGESNSSRHSSCKREDYSSGEKMPIIGLGTATTPLPSNEALTSILVDALDIGYRHFDTASIYGTEEPLGQAVSKALELGLIKHRDEVFITSKLWCTDAHHDLVLKALKTTLKQALFSRTFSFKAVEMNPSWQQGKLREFCMNKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARKKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEDLWDGDP*