AlfalfaGEDB | Msa0702620

M. sativa cultivar zhongmu-4 / Msa0702620

KEGG: K20667
GO: -
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702620	XP_024628198.1	96.868	479	15	0	1	479	1	479	0.0	962

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702620	sp\|A5BFI4\|C7A17_VITVI	54.853	443	200	0	33	475	35	477	0.0	529

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702620	A0A396GRG8	96.868	479	15	0	1	479	1	479	0.0	962

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0702620	0.828006	1.142419e-54	-8.615850e-47
Msa0005690	Msa0702620	0.823240	1.540387e-53	-8.615850e-47
Msa0006050	Msa0702620	0.809950	1.468641e-50	-8.615850e-47
Msa0016380	Msa0702620	0.814015	1.909894e-51	-8.615850e-47
Msa0020320	Msa0702620	0.825025	5.870147e-54	-8.615850e-47
Msa0021710	Msa0702620	0.819866	9.274519e-53	-8.615850e-47
Msa0026670	Msa0702620	0.838199	3.313893e-57	-8.615850e-47
Msa0027030	Msa0702620	0.803471	3.432142e-49	-8.615850e-47
Msa0028450	Msa0702620	0.810990	8.754348e-51	-8.615850e-47
Msa0032450	Msa0702620	0.826114	3.239404e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702620	MtrunA17_Chr8g0380471	96.868	479	15	0	1	479	1	479	0.0	962
Msa0702620	MtrunA17_Chr8g0388921	53.191	470	213	2	13	475	7	476	0.0	520
Msa0702620	MtrunA17_Chr8g0380931	38.661	463	265	9	22	474	50	503	2.01e-112	341
Msa0702620	MtrunA17_Chr5g0443731	38.288	444	270	4	34	475	29	470	8.77e-109	331
Msa0702620	MtrunA17_Chr5g0443401	38.053	452	267	8	31	477	35	478	1.22e-105	323
Msa0702620	MtrunA17_Chr3g0107511	37.421	473	283	8	11	475	9	476	4.23e-104	319
Msa0702620	MtrunA17_Chr3g0107501	36.667	450	273	6	33	475	32	476	7.06e-102	313
Msa0702620	MtrunA17_Chr8g0369791	32.708	480	298	13	1	473	1	462	6.07e-77	248
Msa0702620	MtrunA17_Chr5g0403931	33.333	477	298	12	9	474	11	478	6.74e-77	248
Msa0702620	MtrunA17_Chr7g0226771	32.305	486	308	11	1	479	2	473	9.58e-76	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702620	AT5G36110.1	48.546	447	222	3	33	475	33	475	1.34e-151	441
Msa0702620	AT5G36110.2	45.014	351	186	2	33	380	33	379	6.91e-102	310
Msa0702620	AT2G42850.1	35.371	458	283	8	22	475	34	482	7.23e-92	288
Msa0702620	AT5G45340.1	35.010	477	290	10	1	474	1	460	2.65e-90	283
Msa0702620	AT4G19230.1	33.689	469	286	10	13	473	8	459	1.75e-83	265
Msa0702620	AT5G45340.2	34.444	450	275	10	1	447	1	433	7.91e-80	255
Msa0702620	AT5G36140.1	41.137	299	171	2	19	316	17	311	5.83e-78	246
Msa0702620	AT4G19230.2	33.108	444	272	10	13	448	8	434	1.75e-74	243
Msa0702620	AT3G19270.2	31.263	467	307	8	6	470	6	460	5.41e-73	238
Msa0702620	AT2G29090.2	29.933	451	301	8	28	475	43	481	2.66e-70	231

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Find 113 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAATGTTCAAGTA+TGG	0.410480	4_4:-74311916	Msa0702620:CDS
AAACATACCTTCCATCCACT+AGG	0.600198	4_4:+74310122	None:intergenic
AAAGGTTTGTTACATGAATA+GGG	0.384152	4_4:+74310887	None:intergenic
AACAACTTCTTCACTGAGCT+AGG	0.567202	4_4:+74311890	None:intergenic
AACAACTTGAAATTAGCCAA+GGG	0.643857	4_4:-74310295	Msa0702620:CDS
AACACTTGTTCATAAACTTG+AGG	0.550446	4_4:+74310541	None:intergenic
AACATACCTTCCATCCACTA+GGG	0.616641	4_4:+74310123	None:intergenic
AAGGTTGTCTCTTGTTAATA+AGG	0.311020	4_4:-74311867	Msa0702620:CDS
AAGTAATTTCTAAGTGTTTC+TGG	0.266492	4_4:+74311794	None:intergenic
AATAAGAACTTGTTCCCAGC+TGG	0.553588	4_4:+74311947	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGAACACATATAATTGCA+AGG	+	chr4_4:74309688-74309707	None:intergenic	30.0%
TTATTCATCATAGCTTATGG+AGG	-	chr4_4:74309751-74309770	Msa0702620:CDS	30.0%
TTGTGATGAAATGCAAAAGA+AGG	+	chr4_4:74309820-74309839	None:intergenic	30.0%
AGAAAGCTTAATCTTCCTAA+AGG	-	chr4_4:74309854-74309873	Msa0702620:CDS	30.0%
AAGGTTGTCTCTTGTTAATA+AGG	-	chr4_4:74310114-74310133	Msa0702620:intron	30.0%
TTGTCTCTTGTTAATAAGGT+TGG	-	chr4_4:74310118-74310137	Msa0702620:intron	30.0%
TGAGCAATTCTATCCATATT+TGG	+	chr4_4:74310214-74310233	None:intergenic	30.0%
CTTTCCAATGTGTGTTTATA+TGG	+	chr4_4:74310240-74310259	None:intergenic	30.0%
CATATAAACACACATTGGAA+AGG	-	chr4_4:74310238-74310257	Msa0702620:CDS	30.0%
CTATCATGAAATGAAATGCA+AGG	+	chr4_4:74310311-74310330	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	74309471	74312532	74309471	ID=Msa0702620;Name=Msa0702620
chr4_4	mRNA	74309471	74312532	74309471	ID=Msa0702620-mRNA-1;Parent=Msa0702620;Name=Msa0702620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=296\|1\|1\|1\|1\|1\|4\|223\|480
chr4_4	exon	74309471	74309999	74309471	ID=Msa0702620-mRNA-1:exon:23129;Parent=Msa0702620-mRNA-1
chr4_4	exon	74310130	74310317	74310130	ID=Msa0702620-mRNA-1:exon:23128;Parent=Msa0702620-mRNA-1
chr4_4	exon	74310536	74310991	74310536	ID=Msa0702620-mRNA-1:exon:23127;Parent=Msa0702620-mRNA-1
chr4_4	exon	74311744	74312532	74311744	ID=Msa0702620-mRNA-1:exon:23126;Parent=Msa0702620-mRNA-1
chr4_4	five_prime_UTR	74312237	74312532	74312237	ID=Msa0702620-mRNA-1:five_prime_utr;Parent=Msa0702620-mRNA-1
chr4_4	CDS	74311744	74312236	74311744	ID=Msa0702620-mRNA-1:cds;Parent=Msa0702620-mRNA-1
chr4_4	CDS	74310536	74310991	74310536	ID=Msa0702620-mRNA-1:cds;Parent=Msa0702620-mRNA-1
chr4_4	CDS	74310130	74310317	74310130	ID=Msa0702620-mRNA-1:cds;Parent=Msa0702620-mRNA-1
chr4_4	CDS	74309694	74309999	74309694	ID=Msa0702620-mRNA-1:cds;Parent=Msa0702620-mRNA-1
chr4_4	three_prime_UTR	74309471	74309693	74309471	ID=Msa0702620-mRNA-1:three_prime_utr;Parent=Msa0702620-mRNA-1

Gene Sequence

>Msa0702620

ATGGAGGTGACAAAGCTCATAGTTTTACCAACAGTTTTGGCTCTCTTTGTCCTTCTTTTGCATTTCATCACAAGAATTATCAAACTCAGAAAGCTTAATCTTCCTAAAGGAACCTTAGGATTTCCATTTGTTGGAGAAACCTTTGAATTTCTAAAAGCTAATCTTGAGGGAAAGCAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACTCAAAAGTTTTCAAGACTTCAATGTTTGGAGAGAATATTGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTCTTATTTAGCAATGAAAACAAGAATGTTCAAGTATGGTGGCCTAGCTCAGTGAAGAAGTTGTTAAGGTTGTCTCTTGTTAATAAGGTTGGTGATGAAGCAAAAGCAACTAGAAGGTTGCTTATGAGTTTTCTTAATCCAGAAACACTTAGAAATTACTTGCCAAATATGGATAGAATTGCTCAGCACCATATAAACACACATTGGAAAGGGAAGGAGCAAGTTGTTGTCTATCCTATAATACAGCTATACACATTTGAATTAGCTTGTTGCTTATTTTTAAGCATGGAAGACCCTATTCATGTAACAAACCTTTCATCATATTTTGAAGAATTTCTAAAAGGGATCATTGGCTTCGCAATCAACTTTCCTGGAACAAGGTTTCATAAGGCAATGAAAGCTACAAATGAAATAAGGAAAGAAATTAAAATGATTATGAAGAAAAGGAAAGTGGATTTGGATGAAAAGAAGGCATCACCTACACAAGACCTTTTATCACATTTACTTGTTACACCTGATACAAGTGGAAGGTTTTTGAATGAAGTGGAGATTATTGATAACATACTATTACTTCTTTTTGCTGGCCATGACACTTCTAGATCAGTACTATCATTGGTTATGAAGTATCTTGGAAATTTGCCTCAAGTTTATGAACAAGTGTTGAAAGAACAACTTGAAATTAGCCAAGGGAAAGAGGCAGGGGAGTTATTGCAATGGGAGGATATCCAGAAAATGAAATACTCTTGGAATGTTGCTTCTGAAGTTCTGAGGCTGTCCCCGCCTGTCGGTGGCGCTTTCAGAGATGCCATAAAGGATTTTACCTATGCTGATTATAACATCCCTAGTGGATGGAAGTTGCATTGGAACACACATACAACACACATGGATCCAACACTGTTTTCAAATCCTGAAAAATTTGATGCTTCAAGGTTTGAAGGAGAAGGGCCAACACCTTATTCATATGTTCCATTTGGAGGAGGACCTAGAATGTGTTTGGGGCAAGAGTTCGCTCGGTTAGAGATACTTGTTTTTATGCATAATATTGTGAAACGTTTCAAGTGGGATTTAGTTATTCCTGATGAGAAGTTCAAGTATGATCCTATGCTAGAGCCTGAAAATGGACTTCCAATCAGACTTCAACCTTCCCATTACACACGATAA

Protein sequence

>Msa0702620

MEVTKLIVLPTVLALFVLLLHFITRIIKLRKLNLPKGTLGFPFVGETFEFLKANLEGKQIRFIQERMKKYDSKVFKTSMFGENIAVFCGPAGNKFLFSNENKNVQVWWPSSVKKLLRLSLVNKVGDEAKATRRLLMSFLNPETLRNYLPNMDRIAQHHINTHWKGKEQVVVYPIIQLYTFELACCLFLSMEDPIHVTNLSSYFEEFLKGIIGFAINFPGTRFHKAMKATNEIRKEIKMIMKKRKVDLDEKKASPTQDLLSHLLVTPDTSGRFLNEVEIIDNILLLLFAGHDTSRSVLSLVMKYLGNLPQVYEQVLKEQLEISQGKEAGELLQWEDIQKMKYSWNVASEVLRLSPPVGGAFRDAIKDFTYADYNIPSGWKLHWNTHTTHMDPTLFSNPEKFDASRFEGEGPTPYSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPMLEPENGLPIRLQPSHYTR*