AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 61 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTAATTAGCTAATT+TGG 0.087345 1_1:+69918476 None:intergenic
CTACTAAAATTTAGTTAATT+TGG 0.121575 1_1:+69918457 None:intergenic
AATTAGCTAATTTGGAATTC+TGG 0.147734 1_1:+69918484 None:intergenic
ACACTCTATCTCTAGGATTT+TGG 0.180325 1_1:-69918568 Msa0039950:three_prime_UTR
TAATGGTAAACATGCAATTT+TGG 0.192979 1_1:-69919038 Msa0039950:five_prime_UTR
CTAAATTAAGAACATATTTC+AGG 0.213480 1_1:+69918384 None:intergenic
TAAAATTTGTAGTCACTTAT+AGG 0.222590 1_1:-69919061 Msa0039950:five_prime_UTR
CATGGATCAGAGCTCCAATT+TGG 0.291583 1_1:-69918713 Msa0039950:CDS
ATTGGCTATTGCATCCAAAT+TGG 0.293501 1_1:+69918699 None:intergenic
ACGAATTGTGGGTGAGGTTT+GGG 0.312179 1_1:-69918929 Msa0039950:CDS
AACGAATTGTGGGTGAGGTT+TGG 0.319335 1_1:-69918930 Msa0039950:CDS
GTAGGCTTTACCATGTTATA+TGG 0.321481 1_1:-69918438 Msa0039950:three_prime_UTR
CATGTGGCTGGAAATAGATT+TGG 0.332696 1_1:-69919006 Msa0039950:CDS
CATATTTCAGGTTCCAGAAC+TGG 0.344534 1_1:+69918396 None:intergenic
ATTAGCTAATTTGGAATTCT+GGG 0.347616 1_1:+69918485 None:intergenic
GTTTGATTAGAACCCAGTTC+TGG 0.357377 1_1:-69918409 Msa0039950:three_prime_UTR
ATTTGACATCTCTTGGTCAT+TGG 0.386363 1_1:+69918681 None:intergenic
CTCTGTAGAGTACTGTTAGT+TGG 0.388536 1_1:-69918736 Msa0039950:CDS
ATATAAGCATGCAGTGGAAA+AGG 0.410802 1_1:-69918789 Msa0039950:intron
AATGGGATAAGAGGAGAAGT+GGG 0.417607 1_1:-69918975 Msa0039950:CDS
AATTGAGATTTGACATCTCT+TGG 0.426401 1_1:+69918674 None:intergenic
TTGTAGTCACTTATAGGTAA+TGG 0.433229 1_1:-69919055 Msa0039950:five_prime_UTR
ATGTGGCTGGAAATAGATTT+GGG 0.438863 1_1:-69919005 Msa0039950:CDS
GGAAGTGAGAATGGGATAAG+AGG 0.451595 1_1:-69918984 Msa0039950:CDS
ATAGATTTGGGAAGTGAGAA+TGG 0.454150 1_1:-69918993 Msa0039950:CDS
AATTCGTTTACCTTCCCGTC+TGG 0.462290 1_1:+69918945 None:intergenic
TCTCAATTGCTGCTTTGTGC+AGG 0.467785 1_1:-69918659 Msa0039950:CDS
TAGAGTACTGTTAGTTGGCA+TGG 0.483395 1_1:-69918731 Msa0039950:CDS
TATAAGCATGCAGTGGAAAA+GGG 0.484401 1_1:-69918788 Msa0039950:intron
AAGTGGGGAGAGAGCCAGAC+GGG 0.486504 1_1:-69918959 Msa0039950:CDS
CAGACATTGCAAGCGCTTGA+GGG 0.486541 1_1:+69918891 None:intergenic
CAAATCTATTTCCAGCCACA+TGG 0.492033 1_1:+69919007 None:intergenic
CGGGAAGGTAAACGAATTGT+GGG 0.492647 1_1:-69918940 Msa0039950:CDS
TCGAGTGCAAAATTGATTGT+GGG 0.494089 1_1:-69919104 Msa0039950:five_prime_UTR
AAAGTTGAAATAAAACAGAA+AGG 0.505262 1_1:+69918173 None:intergenic
TTCGAGTGCAAAATTGATTG+TGG 0.507240 1_1:-69919105 Msa0039950:five_prime_UTR
AAGTTGAAATAAAACAGAAA+GGG 0.507925 1_1:+69918174 None:intergenic
ACAGACATTGCAAGCGCTTG+AGG 0.510509 1_1:+69918890 None:intergenic
TCTCTAGACACTCTATCTCT+AGG 0.513782 1_1:-69918575 Msa0039950:exon
CCATGCCGTGCAAATTTCCC+AGG 0.517206 1_1:-69918224 Msa0039950:three_prime_UTR
ATTCTGGGTCCTTTAGAAAG+AGG 0.521367 1_1:+69918500 None:intergenic
GAATGGGATAAGAGGAGAAG+TGG 0.522318 1_1:-69918976 Msa0039950:CDS
ACGGGAAGGTAAACGAATTG+TGG 0.523434 1_1:-69918941 Msa0039950:CDS
TGGTACTCTACCCATGTGGC+TGG 0.529596 1_1:-69919018 Msa0039950:exon
TAGATTTGGGAAGTGAGAAT+GGG 0.530133 1_1:-69918992 Msa0039950:CDS
GCTTTACCATGTTATATGGT+AGG 0.535035 1_1:-69918434 Msa0039950:three_prime_UTR
ATATTTCAGGTTCCAGAACT+GGG 0.555600 1_1:+69918397 None:intergenic
AAAACTGTGAAGTCATATGA+AGG 0.557778 1_1:+69918286 None:intergenic
AGGTAAACGAATTGTGGGTG+AGG 0.558774 1_1:-69918935 Msa0039950:CDS
ATATATCTACCTCTTTCTAA+AGG 0.562447 1_1:-69918509 Msa0039950:three_prime_UTR
TTGTACATCTAGGATGAACC+TGG 0.563418 1_1:+69918206 None:intergenic
GGGGAGAGAGCCAGACGGGA+AGG 0.575105 1_1:-69918955 Msa0039950:CDS
ATTGTGGGTGAGGTTTGGGA+AGG 0.588511 1_1:-69918925 Msa0039950:CDS
ATGGGATAAGAGGAGAAGTG+GGG 0.594766 1_1:-69918974 Msa0039950:CDS
AGACATTGCAAGCGCTTGAG+GGG 0.598037 1_1:+69918892 None:intergenic
AAATCTATTTCCAGCCACAT+GGG 0.611217 1_1:+69919008 None:intergenic
CCTGGGAAATTTGCACGGCA+TGG 0.616332 1_1:+69918224 None:intergenic
GAAGTGGGGAGAGAGCCAGA+CGG 0.628004 1_1:-69918960 Msa0039950:CDS
ATGAACCTGGGAAATTTGCA+CGG 0.639151 1_1:+69918219 None:intergenic
AAACTACCTACCATATAACA+TGG 0.650724 1_1:+69918428 None:intergenic
TGTACATCTAGGATGAACCT+GGG 0.684539 1_1:+69918207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTACTAAAATTTAGTTAATT+TGG + chr1_1:69918792-69918811 None:intergenic 15.0%
!!! CAAATTAACTAAATTTTAGT+AGG - chr1_1:69918790-69918809 Msa0039950:intron 15.0%
!! CTACTAAAATTTAGTTAATT+TGG + chr1_1:69918792-69918811 None:intergenic 15.0%
!!! CAAATTAACTAAATTTTAGT+AGG - chr1_1:69918790-69918809 Msa0039950:intron 15.0%
!! TAAAATTTGTAGTCACTTAT+AGG - chr1_1:69918185-69918204 Msa0039950:three_prime_UTR 20.0%
!!! TTTTCCTTTCTGTTTTATTA+TGG - chr1_1:69918382-69918401 Msa0039950:three_prime_UTR 20.0%
!! AAATCCATAATAAAACAGAA+AGG + chr1_1:69918389-69918408 None:intergenic 20.0%
!!! ACAGAGAAATTTTTTAAGAA+GGG + chr1_1:69918496-69918515 None:intergenic 20.0%
!!! TACAGAGAAATTTTTTAAGA+AGG + chr1_1:69918497-69918516 None:intergenic 20.0%
!! TTGGAATTAATTAGCTAATT+TGG + chr1_1:69918773-69918792 None:intergenic 20.0%
!! CTAAATTAAGAACATATTTC+AGG + chr1_1:69918865-69918884 None:intergenic 20.0%
!! AAGTTGAAATAAAACAGAAA+GGG + chr1_1:69919075-69919094 None:intergenic 20.0%
!! AAAGTTGAAATAAAACAGAA+AGG + chr1_1:69919076-69919095 None:intergenic 20.0%
!!! ATTTTCAACTCATTTTAGAA+CGG - chr1_1:69919102-69919121 Msa0039950:five_prime_UTR 20.0%
!! TAAAATTTGTAGTCACTTAT+AGG - chr1_1:69918185-69918204 Msa0039950:three_prime_UTR 20.0%
!!! TTTTCCTTTCTGTTTTATTA+TGG - chr1_1:69918382-69918401 Msa0039950:three_prime_UTR 20.0%
!! AAATCCATAATAAAACAGAA+AGG + chr1_1:69918389-69918408 None:intergenic 20.0%
!!! ACAGAGAAATTTTTTAAGAA+GGG + chr1_1:69918496-69918515 None:intergenic 20.0%
!!! TACAGAGAAATTTTTTAAGA+AGG + chr1_1:69918497-69918516 None:intergenic 20.0%
!! TTGGAATTAATTAGCTAATT+TGG + chr1_1:69918773-69918792 None:intergenic 20.0%
!! CTAAATTAAGAACATATTTC+AGG + chr1_1:69918865-69918884 None:intergenic 20.0%
!! AAGTTGAAATAAAACAGAAA+GGG + chr1_1:69919075-69919094 None:intergenic 20.0%
!! AAAGTTGAAATAAAACAGAA+AGG + chr1_1:69919076-69919095 None:intergenic 20.0%
!!! ATTTTCAACTCATTTTAGAA+CGG - chr1_1:69919102-69919121 Msa0039950:five_prime_UTR 20.0%
!! TAATGGTAAACATGCAATTT+TGG - chr1_1:69918208-69918227 Msa0039950:three_prime_UTR 25.0%
!!! ATTTTTTAAGAAGGGAATGA+AGG + chr1_1:69918488-69918507 None:intergenic 25.0%
! ATATATCTACCTCTTTCTAA+AGG - chr1_1:69918737-69918756 Msa0039950:CDS 25.0%
!! ATTAGCTAATTTGGAATTCT+GGG + chr1_1:69918764-69918783 None:intergenic 25.0%
!! AATTAGCTAATTTGGAATTC+TGG + chr1_1:69918765-69918784 None:intergenic 25.0%
!! TAATGGTAAACATGCAATTT+TGG - chr1_1:69918208-69918227 Msa0039950:three_prime_UTR 25.0%
!!! ATTTTTTAAGAAGGGAATGA+AGG + chr1_1:69918488-69918507 None:intergenic 25.0%
! ATATATCTACCTCTTTCTAA+AGG - chr1_1:69918737-69918756 Msa0039950:CDS 25.0%
!! ATTAGCTAATTTGGAATTCT+GGG + chr1_1:69918764-69918783 None:intergenic 25.0%
!! AATTAGCTAATTTGGAATTC+TGG + chr1_1:69918765-69918784 None:intergenic 25.0%
! TTTTACGCAAGTTTTTCATC+TGG + chr1_1:69918170-69918189 None:intergenic 30.0%
TTGTAGTCACTTATAGGTAA+TGG - chr1_1:69918191-69918210 Msa0039950:three_prime_UTR 30.0%
AATTGAGATTTGACATCTCT+TGG + chr1_1:69918575-69918594 None:intergenic 30.0%
AAACTACCTACCATATAACA+TGG + chr1_1:69918821-69918840 None:intergenic 30.0%
AAAACTGTGAAGTCATATGA+AGG + chr1_1:69918963-69918982 None:intergenic 30.0%
GAAAAAGACATTGTACATCT+AGG + chr1_1:69919053-69919072 None:intergenic 30.0%
! TTTTACGCAAGTTTTTCATC+TGG + chr1_1:69918170-69918189 None:intergenic 30.0%
TTGTAGTCACTTATAGGTAA+TGG - chr1_1:69918191-69918210 Msa0039950:three_prime_UTR 30.0%
AATTGAGATTTGACATCTCT+TGG + chr1_1:69918575-69918594 None:intergenic 30.0%
AAACTACCTACCATATAACA+TGG + chr1_1:69918821-69918840 None:intergenic 30.0%
AAAACTGTGAAGTCATATGA+AGG + chr1_1:69918963-69918982 None:intergenic 30.0%
GAAAAAGACATTGTACATCT+AGG + chr1_1:69919053-69919072 None:intergenic 30.0%
TCGAGTGCAAAATTGATTGT+GGG - chr1_1:69918142-69918161 Msa0039950:three_prime_UTR 35.0%
AAATCTATTTCCAGCCACAT+GGG + chr1_1:69918241-69918260 None:intergenic 35.0%
ATGTGGCTGGAAATAGATTT+GGG - chr1_1:69918241-69918260 Msa0039950:three_prime_UTR 35.0%
ATAGATTTGGGAAGTGAGAA+TGG - chr1_1:69918253-69918272 Msa0039950:three_prime_UTR 35.0%
TAGATTTGGGAAGTGAGAAT+GGG - chr1_1:69918254-69918273 Msa0039950:three_prime_UTR 35.0%
TTCTTCATATAAGCATGCAG+TGG - chr1_1:69918451-69918470 Msa0039950:three_prime_UTR 35.0%
ATATAAGCATGCAGTGGAAA+AGG - chr1_1:69918457-69918476 Msa0039950:three_prime_UTR 35.0%
TATAAGCATGCAGTGGAAAA+GGG - chr1_1:69918458-69918477 Msa0039950:three_prime_UTR 35.0%
!! TTTTAAGAAGGGAATGAAGG+AGG + chr1_1:69918485-69918504 None:intergenic 35.0%
ATTGGCTATTGCATCCAAAT+TGG + chr1_1:69918550-69918569 None:intergenic 35.0%
ATTTGACATCTCTTGGTCAT+TGG + chr1_1:69918568-69918587 None:intergenic 35.0%
!!! ACACTCTATCTCTAGGATTT+TGG - chr1_1:69918678-69918697 Msa0039950:CDS 35.0%
GTAGGCTTTACCATGTTATA+TGG - chr1_1:69918808-69918827 Msa0039950:intron 35.0%
GCTTTACCATGTTATATGGT+AGG - chr1_1:69918812-69918831 Msa0039950:intron 35.0%
!! ATATTTCAGGTTCCAGAACT+GGG + chr1_1:69918852-69918871 None:intergenic 35.0%
TCGAGTGCAAAATTGATTGT+GGG - chr1_1:69918142-69918161 Msa0039950:three_prime_UTR 35.0%
AAATCTATTTCCAGCCACAT+GGG + chr1_1:69918241-69918260 None:intergenic 35.0%
ATGTGGCTGGAAATAGATTT+GGG - chr1_1:69918241-69918260 Msa0039950:three_prime_UTR 35.0%
ATAGATTTGGGAAGTGAGAA+TGG - chr1_1:69918253-69918272 Msa0039950:three_prime_UTR 35.0%
TAGATTTGGGAAGTGAGAAT+GGG - chr1_1:69918254-69918273 Msa0039950:three_prime_UTR 35.0%
TTCTTCATATAAGCATGCAG+TGG - chr1_1:69918451-69918470 Msa0039950:three_prime_UTR 35.0%
ATATAAGCATGCAGTGGAAA+AGG - chr1_1:69918457-69918476 Msa0039950:three_prime_UTR 35.0%
TATAAGCATGCAGTGGAAAA+GGG - chr1_1:69918458-69918477 Msa0039950:three_prime_UTR 35.0%
!! TTTTAAGAAGGGAATGAAGG+AGG + chr1_1:69918485-69918504 None:intergenic 35.0%
ATTGGCTATTGCATCCAAAT+TGG + chr1_1:69918550-69918569 None:intergenic 35.0%
ATTTGACATCTCTTGGTCAT+TGG + chr1_1:69918568-69918587 None:intergenic 35.0%
!!! ACACTCTATCTCTAGGATTT+TGG - chr1_1:69918678-69918697 Msa0039950:CDS 35.0%
GTAGGCTTTACCATGTTATA+TGG - chr1_1:69918808-69918827 Msa0039950:intron 35.0%
GCTTTACCATGTTATATGGT+AGG - chr1_1:69918812-69918831 Msa0039950:intron 35.0%
!! ATATTTCAGGTTCCAGAACT+GGG + chr1_1:69918852-69918871 None:intergenic 35.0%
!! ATTTTGGTACTCTACCCATG+TGG - chr1_1:69918224-69918243 Msa0039950:three_prime_UTR 40.0%
CAAATCTATTTCCAGCCACA+TGG + chr1_1:69918242-69918261 None:intergenic 40.0%
CATGTGGCTGGAAATAGATT+TGG - chr1_1:69918240-69918259 Msa0039950:three_prime_UTR 40.0%
AATGGGATAAGAGGAGAAGT+GGG - chr1_1:69918271-69918290 Msa0039950:three_prime_UTR 40.0%
!! CTCTGTAGAGTACTGTTAGT+TGG - chr1_1:69918510-69918529 Msa0039950:three_prime_UTR 40.0%
!! TAGAGTACTGTTAGTTGGCA+TGG - chr1_1:69918515-69918534 Msa0039950:three_prime_UTR 40.0%
TCTCTAGACACTCTATCTCT+AGG - chr1_1:69918671-69918690 Msa0039950:CDS 40.0%
! ATTCTGGGTCCTTTAGAAAG+AGG + chr1_1:69918749-69918768 None:intergenic 40.0%
GTTTGATTAGAACCCAGTTC+TGG - chr1_1:69918837-69918856 Msa0039950:intron 40.0%
!! CATATTTCAGGTTCCAGAAC+TGG + chr1_1:69918853-69918872 None:intergenic 40.0%
ATGAACCTGGGAAATTTGCA+CGG + chr1_1:69919030-69919049 None:intergenic 40.0%
! TGTACATCTAGGATGAACCT+GGG + chr1_1:69919042-69919061 None:intergenic 40.0%
! TTGTACATCTAGGATGAACC+TGG + chr1_1:69919043-69919062 None:intergenic 40.0%
!! ATTTTGGTACTCTACCCATG+TGG - chr1_1:69918224-69918243 Msa0039950:three_prime_UTR 40.0%
CAAATCTATTTCCAGCCACA+TGG + chr1_1:69918242-69918261 None:intergenic 40.0%
CATGTGGCTGGAAATAGATT+TGG - chr1_1:69918240-69918259 Msa0039950:three_prime_UTR 40.0%
AATGGGATAAGAGGAGAAGT+GGG - chr1_1:69918271-69918290 Msa0039950:three_prime_UTR 40.0%
!! CTCTGTAGAGTACTGTTAGT+TGG - chr1_1:69918510-69918529 Msa0039950:three_prime_UTR 40.0%
!! TAGAGTACTGTTAGTTGGCA+TGG - chr1_1:69918515-69918534 Msa0039950:three_prime_UTR 40.0%
TCTCTAGACACTCTATCTCT+AGG - chr1_1:69918671-69918690 Msa0039950:CDS 40.0%
! ATTCTGGGTCCTTTAGAAAG+AGG + chr1_1:69918749-69918768 None:intergenic 40.0%
GTTTGATTAGAACCCAGTTC+TGG - chr1_1:69918837-69918856 Msa0039950:intron 40.0%
!! CATATTTCAGGTTCCAGAAC+TGG + chr1_1:69918853-69918872 None:intergenic 40.0%
ATGAACCTGGGAAATTTGCA+CGG + chr1_1:69919030-69919049 None:intergenic 40.0%
! TGTACATCTAGGATGAACCT+GGG + chr1_1:69919042-69919061 None:intergenic 40.0%
! TTGTACATCTAGGATGAACC+TGG + chr1_1:69919043-69919062 None:intergenic 40.0%
GGAAGTGAGAATGGGATAAG+AGG - chr1_1:69918262-69918281 Msa0039950:three_prime_UTR 45.0%
GAATGGGATAAGAGGAGAAG+TGG - chr1_1:69918270-69918289 Msa0039950:three_prime_UTR 45.0%
ATGGGATAAGAGGAGAAGTG+GGG - chr1_1:69918272-69918291 Msa0039950:three_prime_UTR 45.0%
AATTCGTTTACCTTCCCGTC+TGG + chr1_1:69918304-69918323 None:intergenic 45.0%
ACGGGAAGGTAAACGAATTG+TGG - chr1_1:69918305-69918324 Msa0039950:three_prime_UTR 45.0%
CGGGAAGGTAAACGAATTGT+GGG - chr1_1:69918306-69918325 Msa0039950:three_prime_UTR 45.0%
AGGTAAACGAATTGTGGGTG+AGG - chr1_1:69918311-69918330 Msa0039950:three_prime_UTR 45.0%
AACGAATTGTGGGTGAGGTT+TGG - chr1_1:69918316-69918335 Msa0039950:three_prime_UTR 45.0%
ACGAATTGTGGGTGAGGTTT+GGG - chr1_1:69918317-69918336 Msa0039950:three_prime_UTR 45.0%
CATGGATCAGAGCTCCAATT+TGG - chr1_1:69918533-69918552 Msa0039950:three_prime_UTR 45.0%
!! TCTCAATTGCTGCTTTGTGC+AGG - chr1_1:69918587-69918606 Msa0039950:exon 45.0%
GGAAGTGAGAATGGGATAAG+AGG - chr1_1:69918262-69918281 Msa0039950:three_prime_UTR 45.0%
GAATGGGATAAGAGGAGAAG+TGG - chr1_1:69918270-69918289 Msa0039950:three_prime_UTR 45.0%
ATGGGATAAGAGGAGAAGTG+GGG - chr1_1:69918272-69918291 Msa0039950:three_prime_UTR 45.0%
AATTCGTTTACCTTCCCGTC+TGG + chr1_1:69918304-69918323 None:intergenic 45.0%
ACGGGAAGGTAAACGAATTG+TGG - chr1_1:69918305-69918324 Msa0039950:three_prime_UTR 45.0%
CGGGAAGGTAAACGAATTGT+GGG - chr1_1:69918306-69918325 Msa0039950:three_prime_UTR 45.0%
AGGTAAACGAATTGTGGGTG+AGG - chr1_1:69918311-69918330 Msa0039950:three_prime_UTR 45.0%
AACGAATTGTGGGTGAGGTT+TGG - chr1_1:69918316-69918335 Msa0039950:three_prime_UTR 45.0%
ACGAATTGTGGGTGAGGTTT+GGG - chr1_1:69918317-69918336 Msa0039950:three_prime_UTR 45.0%
CATGGATCAGAGCTCCAATT+TGG - chr1_1:69918533-69918552 Msa0039950:three_prime_UTR 45.0%
!! TCTCAATTGCTGCTTTGTGC+AGG - chr1_1:69918587-69918606 Msa0039950:exon 45.0%
ATTGTGGGTGAGGTTTGGGA+AGG - chr1_1:69918321-69918340 Msa0039950:three_prime_UTR 50.0%
AGACATTGCAAGCGCTTGAG+GGG + chr1_1:69918357-69918376 None:intergenic 50.0%
CAGACATTGCAAGCGCTTGA+GGG + chr1_1:69918358-69918377 None:intergenic 50.0%
ACAGACATTGCAAGCGCTTG+AGG + chr1_1:69918359-69918378 None:intergenic 50.0%
ATTGTGGGTGAGGTTTGGGA+AGG - chr1_1:69918321-69918340 Msa0039950:three_prime_UTR 50.0%
AGACATTGCAAGCGCTTGAG+GGG + chr1_1:69918357-69918376 None:intergenic 50.0%
CAGACATTGCAAGCGCTTGA+GGG + chr1_1:69918358-69918377 None:intergenic 50.0%
ACAGACATTGCAAGCGCTTG+AGG + chr1_1:69918359-69918378 None:intergenic 50.0%
TGGTACTCTACCCATGTGGC+TGG - chr1_1:69918228-69918247 Msa0039950:three_prime_UTR 55.0%
CCTGGGAAATTTGCACGGCA+TGG + chr1_1:69919025-69919044 None:intergenic 55.0%
CCATGCCGTGCAAATTTCCC+AGG - chr1_1:69919022-69919041 Msa0039950:exon 55.0%
TGGTACTCTACCCATGTGGC+TGG - chr1_1:69918228-69918247 Msa0039950:three_prime_UTR 55.0%
CCTGGGAAATTTGCACGGCA+TGG + chr1_1:69919025-69919044 None:intergenic 55.0%
CCATGCCGTGCAAATTTCCC+AGG - chr1_1:69919022-69919041 Msa0039950:exon 55.0%
GAAGTGGGGAGAGAGCCAGA+CGG - chr1_1:69918286-69918305 Msa0039950:three_prime_UTR 60.0%
AAGTGGGGAGAGAGCCAGAC+GGG - chr1_1:69918287-69918306 Msa0039950:three_prime_UTR 60.0%
GAAGTGGGGAGAGAGCCAGA+CGG - chr1_1:69918286-69918305 Msa0039950:three_prime_UTR 60.0%
AAGTGGGGAGAGAGCCAGAC+GGG - chr1_1:69918287-69918306 Msa0039950:three_prime_UTR 60.0%
GGGGAGAGAGCCAGACGGGA+AGG - chr1_1:69918291-69918310 Msa0039950:three_prime_UTR 70.0%
GGGGAGAGAGCCAGACGGGA+AGG - chr1_1:69918291-69918310 Msa0039950:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69918142 69919126 69918142 ID=Msa0039950;Name=Msa0039950
chr1_1 mRNA 69918142 69919126 69918142 ID=Msa0039950-mRNA-1;Parent=Msa0039950;Name=Msa0039950-mRNA-1;_AED=0.38;_eAED=0.38;_QI=99|1|1|1|1|1|2|449|112
chr1_1 exon 69918142 69918797 69918142 ID=Msa0039950-mRNA-1:exon:22980;Parent=Msa0039950-mRNA-1
chr1_1 exon 69918896 69919126 69918896 ID=Msa0039950-mRNA-1:exon:22979;Parent=Msa0039950-mRNA-1
chr1_1 five_prime_UTR 69919028 69919126 69919028 ID=Msa0039950-mRNA-1:five_prime_utr;Parent=Msa0039950-mRNA-1
chr1_1 CDS 69918896 69919027 69918896 ID=Msa0039950-mRNA-1:cds;Parent=Msa0039950-mRNA-1
chr1_1 CDS 69918591 69918797 69918591 ID=Msa0039950-mRNA-1:cds;Parent=Msa0039950-mRNA-1
chr1_1 three_prime_UTR 69918142 69918590 69918142 ID=Msa0039950-mRNA-1:three_prime_utr;Parent=Msa0039950-mRNA-1
Gene Sequence

>Msa0039950

ATGTGGCTGGAAATAGATTTGGGAAGTGAGAATGGGATAAGAGGAGAAGTGGGGAGAGAGCCAGACGGGAAGGTAAACGAATTGTGGGTGAGGTTTGGGAAGGAGAAAACAAACCCCTCAAGCGCTTGCAATTGGAAAAGGGACCTCCTTCATTCCCTTCTTAAAAAATTTCTCTGTAGAGTACTGTTAGTTGGCATGGATCAGAGCTCCAATTTGGATGCAATAGCCAATGACCAAGAGATGTCAAATCTCAATTGCTGCTTTGTGCAGGAGAATCTACGTCTCTCTGAACATATTTTCAGTCAATGTGAAGTTCTTATCTTTTTTCTGTTTCTCTAG
Protein sequence

>Msa0039950

MWLEIDLGSENGIRGEVGREPDGKVNELWVRFGKEKTNPSSACNWKRDLLHSLLKKFLCRVLLVGMDQSSNLDAIANDQEMSNLNCCFVQENLRLSEHIFSQCEVLIFFLFL*