AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341710 MtrunA17_Chr2g0334101 95.487 421 12 3 1 417 1 418 0.0 820
Msa0341710 MtrunA17_Chr3g0112121 49.422 346 161 9 74 413 82 419 8.08e-110 330
Msa0341710 MtrunA17_Chr4g0009431 54.110 292 127 6 122 412 134 419 8.20e-110 331
Msa0341710 MtrunA17_Chr5g0435631 48.555 346 164 9 74 413 82 419 1.64e-107 325
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341710 AT1G73110.1 77.225 382 87 0 36 417 51 432 0.0 635
Msa0341710 AT1G73110.2 78.302 318 69 0 100 417 18 335 0.0 539
Msa0341710 AT2G39730.2 47.246 345 168 9 74 412 81 417 2.18e-103 314
Msa0341710 AT2G39730.3 47.246 345 168 9 74 412 81 417 2.61e-103 313
Msa0341710 AT2G39730.1 47.246 345 168 9 74 412 81 417 6.25e-103 314

Find 96 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTGATTCTTGGTATT+TGG 0.110335 2_4:-63577990 Msa0341710:CDS
TTACACATTTACACTGTTAT+TGG 0.152036 2_4:+63573002 None:intergenic
TCCTTTGATTCTTGGTATTT+GGG 0.170575 2_4:-63577989 Msa0341710:CDS
GCTAAAGTTCCTTTGATTCT+TGG 0.197912 2_4:-63577997 Msa0341710:CDS
TCATTTCCTGTTACAATGAT+TGG 0.261969 2_4:+63577189 None:intergenic
TCTTAGTGGGTTGATGATAT+TGG 0.294945 2_4:-63574658 Msa0341710:intron
AATGGAAAATGATTAGGATT+TGG 0.320640 2_4:-63578498 Msa0341710:five_prime_UTR
CGCTCACGAATCAATCTTCC+AGG 0.332433 2_4:+63577856 None:intergenic
TGACCAATACTAACTCTTGT+AGG 0.349127 2_4:+63577246 None:intergenic
AGCAGCTTCGCCATCAGTTC+AGG 0.353117 2_4:+63578441 None:intergenic
AGAATTCCAATCATTGTAAC+AGG 0.372987 2_4:-63577195 Msa0341710:CDS
TCTGAAAATGCTGGTGAGCC+TGG 0.386060 2_4:-63577874 Msa0341710:CDS
CAAAGAACAACAGTTGATAA+TGG 0.386217 2_4:-63573248 Msa0341710:CDS
ATCATTGACGATGTCTTTGC+CGG 0.392037 2_4:-63578177 Msa0341710:CDS
ATAAGGAATGGAAAATGATT+AGG 0.394734 2_4:-63578504 Msa0341710:five_prime_UTR
CAATATTCAGTATATCTTCC+TGG 0.396347 2_4:+63576809 None:intergenic
TGTAAATGTGTAATGATATC+TGG 0.398904 2_4:-63572992 Msa0341710:three_prime_UTR
GAATAAATACAGGAAGATTC+TGG 0.403777 2_4:+63574590 None:intergenic
GTTATCAGAGCAATCTTCTT+GGG 0.408586 2_4:-63578289 Msa0341710:CDS
GCAATCTTCTTGGGAAACTA+AGG 0.416952 2_4:-63578280 Msa0341710:CDS
ATCGATGCTTTACTTGAGTC+AGG 0.418408 2_4:-63573283 Msa0341710:CDS
TCCCCAGCAGACATAATAAC+AGG 0.420434 2_4:+63577904 None:intergenic
CTTGGTATTTGGGGTGGTAA+AGG 0.421304 2_4:-63577979 Msa0341710:CDS
AGTTATCAGAGCAATCTTCT+TGG 0.427745 2_4:-63578290 Msa0341710:CDS
TAGAAAGCATGTTGGTTCTC+TGG 0.432494 2_4:-63573181 Msa0341710:three_prime_UTR
GTCTCTGCCGAGAAAATTGC+CGG 0.437752 2_4:+63578158 None:intergenic
GGTTGTTATGTGGCGGGGAA+TGG 0.437940 2_4:-63578477 Msa0341710:five_prime_UTR
TGTAATGATATCTGGTTCAT+TGG 0.439332 2_4:-63572984 Msa0341710:three_prime_UTR
GTCAACAATCAAATTGTTGT+TGG 0.443707 2_4:-63577294 Msa0341710:CDS
GATGCTGGTCTTGGTCGATT+TGG 0.450176 2_4:-63577520 Msa0341710:intron
TACGAATAAGTACCTTGATT+AGG 0.450433 2_4:+63576721 None:intergenic
TCAACAATCAAATTGTTGTT+GGG 0.454211 2_4:-63577293 Msa0341710:CDS
GGATTTGGTTGTTATGTGGC+GGG 0.460930 2_4:-63578483 Msa0341710:five_prime_UTR
GAGTTAGTATTGGTCAAGAT+TGG 0.467534 2_4:-63577239 Msa0341710:CDS
TTCAGTATATCTTCCTGGTT+AGG 0.472744 2_4:+63576814 None:intergenic
TGAAGTCGCTACCTTCAATA+AGG 0.473749 2_4:-63573129 Msa0341710:three_prime_UTR
ACCTCTGGAGGAATAAATAC+AGG 0.480480 2_4:+63574580 None:intergenic
AATGACATTGATGCTGGTCT+TGG 0.482478 2_4:-63577529 Msa0341710:CDS
ATGAGAAAGATGGCATATCC+AGG 0.482603 2_4:-63576774 Msa0341710:CDS
CAATGTAATAATCTCCTTGA+AGG 0.484497 2_4:+63578085 None:intergenic
GAACCTGTTATTATGTCTGC+TGG 0.485284 2_4:-63577907 Msa0341710:CDS
AGATCATTTCAATACCTTCA+AGG 0.488011 2_4:-63578099 Msa0341710:CDS
TCAAAAGTGGACCTTATTGA+AGG 0.490483 2_4:+63573118 None:intergenic
ATCCTTCCATCACGTATCAA+TGG 0.491684 2_4:+63577147 None:intergenic
AGAAGAACCCTGTTCAAAAG+TGG 0.492603 2_4:+63573105 None:intergenic
TGAATGAGAATGAATTGGAA+TGG 0.496751 2_4:+63578391 None:intergenic
GGTTCTCTGGTGCAAGTCCA+CGG 0.503752 2_4:-63573168 Msa0341710:three_prime_UTR
AACCTGTTATTATGTCTGCT+GGG 0.507623 2_4:-63577906 Msa0341710:CDS
TGAACTTATCTTTCGTGCCA+TGG 0.507643 2_4:-63577935 Msa0341710:CDS
TTGATTCTTGGTATTTGGGG+TGG 0.509342 2_4:-63577985 Msa0341710:CDS
CAAATTTCTCAAAAGAAGAA+AGG 0.512041 2_4:-63574614 Msa0341710:CDS
GAATGAGAATGAATTGGAAT+GGG 0.517095 2_4:+63578392 None:intergenic
AGGATTTGGTTGTTATGTGG+CGG 0.519837 2_4:-63578484 Msa0341710:five_prime_UTR
ATTAGGATTTGGTTGTTATG+TGG 0.519913 2_4:-63578487 Msa0341710:five_prime_UTR
CAAAGAATGTATGAGAAAGA+TGG 0.523243 2_4:-63576784 Msa0341710:CDS
TAGCATTGAGGAGATGAGAA+AGG 0.523867 2_4:+63578016 None:intergenic
GTGGCACAGGCAGCCTAACC+AGG 0.526609 2_4:-63576827 Msa0341710:intron
CCTTTGATTCTTGGTATTTG+GGG 0.531341 2_4:-63577988 Msa0341710:CDS
ATGTGGCGGGGAATGGAAAG+AGG 0.534405 2_4:-63578470 Msa0341710:five_prime_UTR
TCCTGTATTTATTCCTCCAG+AGG 0.540010 2_4:-63574581 Msa0341710:intron
TCAAAGGAACTTTAGCATTG+AGG 0.541401 2_4:+63578004 None:intergenic
GAACTTGAATCTGAAAATGC+TGG 0.543802 2_4:-63577883 Msa0341710:CDS
AAAGACATCGTCAATGATGC+CGG 0.544929 2_4:+63578182 None:intergenic
GAACTTATCTTTCGTGCCAT+GGG 0.546538 2_4:-63577934 Msa0341710:CDS
AAAATAGAGAAGATAAGGAA+TGG 0.546896 2_4:-63578516 None:intergenic
ATGATCAATGACATTGATGC+TGG 0.550132 2_4:-63577535 Msa0341710:CDS
GTTCTCTGGTGCAAGTCCAC+GGG 0.551256 2_4:-63573167 Msa0341710:three_prime_UTR
ATCGCCGTTGGTCAACGTGC+CGG 0.551366 2_4:-63578201 Msa0341710:CDS
GAGGAGGATTCCTGAACTGA+TGG 0.556628 2_4:-63578451 Msa0341710:exon
AATGGAAACTAAACTTTCGA+AGG 0.571792 2_4:-63573230 Msa0341710:CDS
TATGCTCCATTGATACGTGA+TGG 0.578504 2_4:-63577153 Msa0341710:CDS
AATCCTACAAGAGTTAGTAT+TGG 0.579350 2_4:-63577249 Msa0341710:CDS
ACGATAATCAAAGACAATGT+CGG 0.579999 2_4:+63578134 None:intergenic
CCCCAAATACCAAGAATCAA+AGG 0.580897 2_4:+63577988 None:intergenic
GGATGACTATTTACCTCTGG+AGG 0.584674 2_4:+63574568 None:intergenic
GAATTGGAATGGGAAGAAGT+TGG 0.585196 2_4:+63578402 None:intergenic
GATTTGGTTGTTATGTGGCG+GGG 0.588040 2_4:-63578482 Msa0341710:five_prime_UTR
ATTGATACGTGATGGAAGGA+TGG 0.589829 2_4:-63577145 Msa0341710:CDS
TGGGAAACTAAGGATTCTGA+AGG 0.591317 2_4:-63578270 Msa0341710:CDS
AAGACTAATAGAAAGCATGT+TGG 0.599434 2_4:-63573189 Msa0341710:exon
GATGCCGGCACGTTGACCAA+CGG 0.601114 2_4:+63578197 None:intergenic
AGAGACTATCTCTACAGACT+TGG 0.603878 2_4:-63578246 Msa0341710:CDS
CTAGAGAATTGCGAATGATG+TGG 0.608093 2_4:+63578363 None:intergenic
TAGTGGGTTGATGATATTGG+AGG 0.612663 2_4:-63574655 Msa0341710:CDS
TTGGAATGGGAAGAAGTTGG+CGG 0.614229 2_4:+63578405 None:intergenic
ATTTGGGGTGGTAAAGGCCA+AGG 0.615673 2_4:-63577973 Msa0341710:CDS
CTCCATTGATACGTGATGGA+AGG 0.616615 2_4:-63577149 Msa0341710:CDS
AATAACAGGTTCAACTCCCA+TGG 0.625979 2_4:+63577918 None:intergenic
TGAGAAAGATGGCATATCCA+GGG 0.627342 2_4:-63576773 Msa0341710:CDS
GATAACATGAACATCGCCGT+TGG 0.627507 2_4:-63578213 Msa0341710:CDS
ACCTGTTATTATGTCTGCTG+GGG 0.629895 2_4:-63577905 Msa0341710:CDS
TGGCGGGGAATGGAAAGAGG+AGG 0.651203 2_4:-63578467 Msa0341710:five_prime_UTR
TCTGGTTCATTGGAACTGCA+TGG 0.661340 2_4:-63572974 Msa0341710:three_prime_UTR
ATTCTGGACGACTCTAGAAG+CGG 0.664921 2_4:+63577825 None:intergenic
ACAATCATACATAATTCCCG+TGG 0.683601 2_4:+63573151 None:intergenic
GGTTCATTGGAACTGCATGG+TGG 0.729140 2_4:-63572971 Msa0341710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAATCAAAACTAT+GGG + chr2_4:63575035-63575054 None:intergenic 10.0%
!! TTAAAATAAAATCAAAACTA+TGG + chr2_4:63575036-63575055 None:intergenic 10.0%
!!! AAAATTAGTATTTTTACATA+TGG + chr2_4:63575480-63575499 None:intergenic 10.0%
!! TAAATAAATATTAAAATGCA+AGG + chr2_4:63576405-63576424 None:intergenic 10.0%
!! TTTATTTATTTATAATAACC+AGG - chr2_4:63576417-63576436 Msa0341710:intron 10.0%
!! TTATTTATTTATAATAACCA+GGG - chr2_4:63576418-63576437 Msa0341710:intron 10.0%
!! TGGATAAAAAAAAAAAAAAA+GGG + chr2_4:63576717-63576736 None:intergenic 10.0%
!! ATGGATAAAAAAAAAAAAAA+AGG + chr2_4:63576718-63576737 None:intergenic 10.0%
!! ATATTTCATCAATATTAATT+TGG + chr2_4:63576978-63576997 None:intergenic 10.0%
!!! ATTTGATTGTATTTTAAAAA+AGG - chr2_4:63577124-63577143 Msa0341710:intron 10.0%
!!! TCATTTTCTTTTTTTATTCT+AGG - chr2_4:63574349-63574368 Msa0341710:intron 15.0%
!! TAATAAGCATAGAATAAAAT+AGG + chr2_4:63574891-63574910 None:intergenic 15.0%
!! AGATATATTAATGTAAACTA+AGG + chr2_4:63575432-63575451 None:intergenic 15.0%
!!! AAATTTGAAGCATAATAAAT+TGG - chr2_4:63576264-63576283 Msa0341710:intron 15.0%
!! TATTTATTTATAATAACCAG+GGG - chr2_4:63576419-63576438 Msa0341710:intron 15.0%
!! TAAATATAGCCAAAATTATT+AGG - chr2_4:63577057-63577076 Msa0341710:intron 15.0%
!! AAATATAGCCAAAATTATTA+GGG - chr2_4:63577058-63577077 Msa0341710:intron 15.0%
!! ATAAATAAGATTGAAATCTA+AGG - chr2_4:63577400-63577419 Msa0341710:intron 15.0%
!! TAAATAAGATTGAAATCTAA+GGG - chr2_4:63577401-63577420 Msa0341710:intron 15.0%
!!! TTTTTTGAATGAGAATGAAT+TGG + chr2_4:63573067-63573086 None:intergenic 20.0%
!! AACAAGATAAATCATGAATT+TGG + chr2_4:63573684-63573703 None:intergenic 20.0%
!!! TACTTTTCCTGTTTTAATAT+AGG - chr2_4:63574117-63574136 Msa0341710:intron 20.0%
!!! ACTTTTCCTGTTTTAATATA+GGG - chr2_4:63574118-63574137 Msa0341710:intron 20.0%
!! CCATAATTAAAATACATGAA+TGG + chr2_4:63574386-63574405 None:intergenic 20.0%
!!! CCATTCATGTATTTTAATTA+TGG - chr2_4:63574383-63574402 Msa0341710:intron 20.0%
!!! ATTGTTGGATAAAATGTTTT+AGG - chr2_4:63574423-63574442 Msa0341710:intron 20.0%
!!! ACATTTACGAAAACATTTTA+GGG + chr2_4:63574605-63574624 None:intergenic 20.0%
!!! ATATGACAGATCTATTTTAA+AGG - chr2_4:63575396-63575415 Msa0341710:intron 20.0%
!!! AGTATTTTTACATATGGAAA+TGG + chr2_4:63575474-63575493 None:intergenic 20.0%
!!! TATGTTTGGTGAAATATTAA+TGG - chr2_4:63575517-63575536 Msa0341710:intron 20.0%
!! TTCTATAACATACTAGAATA+AGG + chr2_4:63575918-63575937 None:intergenic 20.0%
!! ATTTCATTACAAGTTACAAT+GGG + chr2_4:63576234-63576253 None:intergenic 20.0%
!! AATTTCATTACAAGTTACAA+TGG + chr2_4:63576235-63576254 None:intergenic 20.0%
!! ATATAATGGCAGAAATATAA+TGG + chr2_4:63576517-63576536 None:intergenic 20.0%
!! TAAATAAGACTGAAATCTAA+GGG + chr2_4:63577214-63577233 None:intergenic 20.0%
!! ATAAATAAGACTGAAATCTA+AGG + chr2_4:63577215-63577234 None:intergenic 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr2_4:63577534-63577553 None:intergenic 20.0%
!!! TTATTGGCTAACATTAATTT+CGG - chr2_4:63577534-63577553 Msa0341710:CDS 20.0%
!! TTATTGATATTATCATGCAA+AGG - chr2_4:63577588-63577607 Msa0341710:intron 20.0%
!! TATTGAAACTCAAAATTTGA+AGG - chr2_4:63577731-63577750 Msa0341710:intron 20.0%
!!! AAATTAGTTGCAAATGTTTT+GGG - chr2_4:63577973-63577992 Msa0341710:CDS 20.0%
!!! AAATTAACTGCTTTTCTATT+TGG - chr2_4:63578130-63578149 Msa0341710:CDS 20.0%
!!! TTTTGTATGTATAATTCATC+TGG - chr2_4:63578385-63578404 Msa0341710:CDS 20.0%
! ATAAGGAATGGAAAATGATT+AGG - chr2_4:63572946-63572965 Msa0341710:three_prime_UTR 25.0%
! AATGGAAAATGATTAGGATT+TGG - chr2_4:63572952-63572971 Msa0341710:three_prime_UTR 25.0%
! GAATTTGGACATACTTAAAA+GGG + chr2_4:63573669-63573688 None:intergenic 25.0%
! TGAATTTGGACATACTTAAA+AGG + chr2_4:63573670-63573689 None:intergenic 25.0%
! TCTACATTTGCTTATATTGA+TGG - chr2_4:63573755-63573774 Msa0341710:intron 25.0%
! TTTAGCAAATTAAGGAAATG+CGG + chr2_4:63573845-63573864 None:intergenic 25.0%
!! TAAATTTGCTTTCTTGATAC+AGG - chr2_4:63573875-63573894 Msa0341710:intron 25.0%
!! AAATTTGCTTTCTTGATACA+GGG - chr2_4:63573876-63573895 Msa0341710:intron 25.0%
! TATAGTCTAATGAACGAAAA+GGG + chr2_4:63574022-63574041 None:intergenic 25.0%
! AGTATTCCCTATATTAAAAC+AGG + chr2_4:63574127-63574146 None:intergenic 25.0%
!! TCAACAATCAAATTGTTGTT+GGG - chr2_4:63574157-63574176 Msa0341710:intron 25.0%
!! TAATTATGGTAGTTTTTGTC+AGG - chr2_4:63574397-63574416 Msa0341710:intron 25.0%
!! TGAATTTTTGCATAGTATTG+TGG - chr2_4:63574446-63574465 Msa0341710:intron 25.0%
! TGATTTCATGAAATGAAACT+AGG - chr2_4:63574562-63574581 Msa0341710:intron 25.0%
!! CACATTTACGAAAACATTTT+AGG + chr2_4:63574606-63574625 None:intergenic 25.0%
!! CTAAAATGTTTTCGTAAATG+TGG - chr2_4:63574604-63574623 Msa0341710:CDS 25.0%
! AACAAGAAACAAATTGTTTC+TGG + chr2_4:63575093-63575112 None:intergenic 25.0%
!! TTTTTCTTTTGGTATTGTCT+TGG + chr2_4:63575557-63575576 None:intergenic 25.0%
! AGACAATACCAAAAGAAAAA+AGG - chr2_4:63575557-63575576 Msa0341710:intron 25.0%
! GACAATACCAAAAGAAAAAA+GGG - chr2_4:63575558-63575577 Msa0341710:intron 25.0%
!! TTTTGTTCCCTTTTTTCTTT+TGG + chr2_4:63575568-63575587 None:intergenic 25.0%
! TTATGTAGTTTAAATGCTGT+TGG - chr2_4:63575737-63575756 Msa0341710:intron 25.0%
!! ATATTTCTGCCATTATATTG+AGG - chr2_4:63576519-63576538 Msa0341710:intron 25.0%
!! TATTTCTGCCATTATATTGA+GGG - chr2_4:63576520-63576539 Msa0341710:intron 25.0%
! TTGTGCGGAAAAATTAAATA+TGG + chr2_4:63576737-63576756 None:intergenic 25.0%
!!! CTTTCTTCTTTTGAGAAATT+TGG + chr2_4:63576838-63576857 None:intergenic 25.0%
! CAAATTTCTCAAAAGAAGAA+AGG - chr2_4:63576836-63576855 Msa0341710:intron 25.0%
!! TCAATATTAATTTGGTTGAC+AGG + chr2_4:63576970-63576989 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG - chr2_4:63577147-63577166 Msa0341710:CDS 25.0%
!! TATTGGCTAACATTAATTTC+GGG + chr2_4:63577535-63577554 None:intergenic 25.0%
! ATCACAAGGTAAAATATCAT+GGG + chr2_4:63577784-63577803 None:intergenic 25.0%
! ATAACGATAAAAACATCACA+AGG + chr2_4:63577798-63577817 None:intergenic 25.0%
!! GAAATTAGTTGCAAATGTTT+TGG - chr2_4:63577972-63577991 Msa0341710:CDS 25.0%
!! AATTAGTTGCAAATGTTTTG+GGG - chr2_4:63577974-63577993 Msa0341710:CDS 25.0%
!! AATGTTACTCTTTAAAGACA+AGG + chr2_4:63578069-63578088 None:intergenic 25.0%
! TTACACATTTACACTGTTAT+TGG + chr2_4:63578451-63578470 None:intergenic 25.0%
! TGTAAATGTGTAATGATATC+TGG - chr2_4:63578458-63578477 Msa0341710:five_prime_UTR 25.0%
! ATTAGGATTTGGTTGTTATG+TGG - chr2_4:63572963-63572982 Msa0341710:three_prime_UTR 30.0%
GAATGAGAATGAATTGGAAT+GGG + chr2_4:63573061-63573080 None:intergenic 30.0%
TGAATGAGAATGAATTGGAA+TGG + chr2_4:63573062-63573081 None:intergenic 30.0%
ACGATAATCAAAGACAATGT+CGG + chr2_4:63573319-63573338 None:intergenic 30.0%
AGATCATTTCAATACCTTCA+AGG - chr2_4:63573351-63573370 Msa0341710:intron 30.0%
CAATGTAATAATCTCCTTGA+AGG + chr2_4:63573368-63573387 None:intergenic 30.0%
! TTACATTGCTCCTCTTTTTA+TGG - chr2_4:63573380-63573399 Msa0341710:intron 30.0%
ACAACTTTGTCCATAAAAAG+AGG + chr2_4:63573393-63573412 None:intergenic 30.0%
TTCCTTTGATTCTTGGTATT+TGG - chr2_4:63573460-63573479 Msa0341710:intron 30.0%
TCCTTTGATTCTTGGTATTT+GGG - chr2_4:63573461-63573480 Msa0341710:intron 30.0%
! CAGTTTGAAAAGTTTTACCT+TGG + chr2_4:63573497-63573516 None:intergenic 30.0%
AAAAAGTCGTAACTTGATTC+TGG + chr2_4:63573644-63573663 None:intergenic 30.0%
CAGACTACTTTAGCAAATTA+AGG + chr2_4:63573853-63573872 None:intergenic 30.0%
ATAGTCTAATGAACGAAAAG+GGG + chr2_4:63574021-63574040 None:intergenic 30.0%
CTATAGTCTAATGAACGAAA+AGG + chr2_4:63574023-63574042 None:intergenic 30.0%
! AGGAAAAGTATGTTCAGTAA+GGG + chr2_4:63574107-63574126 None:intergenic 30.0%
GTCAACAATCAAATTGTTGT+TGG - chr2_4:63574156-63574175 Msa0341710:intron 30.0%
AATCCTACAAGAGTTAGTAT+TGG - chr2_4:63574201-63574220 Msa0341710:intron 30.0%
AGAATTCCAATCATTGTAAC+AGG - chr2_4:63574255-63574274 Msa0341710:intron 30.0%
TCATTTCCTGTTACAATGAT+TGG + chr2_4:63574264-63574283 None:intergenic 30.0%
! GAAGGATGGATAAATTTTAC+TGG - chr2_4:63574319-63574338 Msa0341710:intron 30.0%
ATGAAATTTCATGATCGATG+TGG - chr2_4:63574470-63574489 Msa0341710:intron 30.0%
CAATATTCAGTATATCTTCC+TGG + chr2_4:63574644-63574663 None:intergenic 30.0%
CAAAGAATGTATGAGAAAGA+TGG - chr2_4:63574666-63574685 Msa0341710:intron 30.0%
! GTGAAAACTTTTCCTAATCA+AGG - chr2_4:63574717-63574736 Msa0341710:intron 30.0%
TACGAATAAGTACCTTGATT+AGG + chr2_4:63574732-63574751 None:intergenic 30.0%
CTGTTAAAACAGTAGTAAGA+AGG - chr2_4:63574791-63574810 Msa0341710:intron 30.0%
GAATGAGAGTGATAAAAGAA+GGG + chr2_4:63574940-63574959 None:intergenic 30.0%
AGAATGAGAGTGATAAAAGA+AGG + chr2_4:63574941-63574960 None:intergenic 30.0%
CTGATATCTCAGTACAAATT+TGG + chr2_4:63574994-63575013 None:intergenic 30.0%
CAAATTTGTACTGAGATATC+AGG - chr2_4:63574992-63575011 Msa0341710:intron 30.0%
!!! ACACACTCTTATTTTGATAC+CGG - chr2_4:63575336-63575355 Msa0341710:intron 30.0%
!! TTACAGTTGCTGTTTATGTT+TGG - chr2_4:63575503-63575522 Msa0341710:intron 30.0%
CTACATAATAAGTAACTGAC+AGG + chr2_4:63575725-63575744 None:intergenic 30.0%
!! CACTCAAAAGCATTACAAAA+GGG + chr2_4:63575803-63575822 None:intergenic 30.0%
!! TCACTCAAAAGCATTACAAA+AGG + chr2_4:63575804-63575823 None:intergenic 30.0%
TGAAGTGATTGTTGAGAAAA+AGG - chr2_4:63575853-63575872 Msa0341710:intron 30.0%
ATTGTTGAGAAAAAGGATCT+AGG - chr2_4:63575860-63575879 Msa0341710:intron 30.0%
TTGTTGAGAAAAAGGATCTA+GGG - chr2_4:63575861-63575880 Msa0341710:intron 30.0%
!! ACATTTGACATTTTGATCCA+TGG - chr2_4:63576100-63576119 Msa0341710:intron 30.0%
!! TTGATCCATGGTTTTTCAAA+AGG - chr2_4:63576112-63576131 Msa0341710:intron 30.0%
!! TGATCCATGGTTTTTCAAAA+GGG - chr2_4:63576113-63576132 Msa0341710:intron 30.0%
ATATAAACTGTTCTAGCACA+AGG + chr2_4:63576156-63576175 None:intergenic 30.0%
! TGTGATATTAGAGCCTTTTA+TGG + chr2_4:63576306-63576325 None:intergenic 30.0%
ATGTTGCATACATTACTACT+GGG + chr2_4:63576454-63576473 None:intergenic 30.0%
TATGTTGCATACATTACTAC+TGG + chr2_4:63576455-63576474 None:intergenic 30.0%
ATTTCTGCCATTATATTGAG+GGG - chr2_4:63576521-63576540 Msa0341710:intron 30.0%
AGCCTCTTGTGTAAAAAATA+GGG - chr2_4:63576612-63576631 Msa0341710:intron 30.0%
!!! TACCCTATTTTTTACACAAG+AGG + chr2_4:63576617-63576636 None:intergenic 30.0%
CTTGTGTAAAAAATAGGGTA+AGG - chr2_4:63576617-63576636 Msa0341710:intron 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr2_4:63576709-63576728 None:intergenic 30.0%
GAATAAATACAGGAAGATTC+TGG + chr2_4:63576863-63576882 None:intergenic 30.0%
!! TCAAGAATGGATTTTCTTGA+TGG - chr2_4:63577160-63577179 Msa0341710:CDS 30.0%
TCTTGATATATAGCATTGCT+CGG + chr2_4:63577271-63577290 None:intergenic 30.0%
! CTACGTTTGTAATTTTCCAT+TGG - chr2_4:63577612-63577631 Msa0341710:intron 30.0%
TTCATCTTCTATCTATCCAA+TGG + chr2_4:63577631-63577650 None:intergenic 30.0%
CATCACAAGGTAAAATATCA+TGG + chr2_4:63577785-63577804 None:intergenic 30.0%
!! ATTAGTTGCAAATGTTTTGG+GGG - chr2_4:63577975-63577994 Msa0341710:CDS 30.0%
! CTTTAAAGACAAGGAAAAGA+AGG + chr2_4:63578060-63578079 None:intergenic 30.0%
!! TAACTGCTTTTCTATTTGGT+TGG - chr2_4:63578134-63578153 Msa0341710:CDS 30.0%
!! CAAAGAACAACAGTTGATAA+TGG - chr2_4:63578202-63578221 Msa0341710:CDS 30.0%
AATGGAAACTAAACTTTCGA+AGG - chr2_4:63578220-63578239 Msa0341710:CDS 30.0%
! AAGACTAATAGAAAGCATGT+TGG - chr2_4:63578261-63578280 Msa0341710:CDS 30.0%
! TGTAATGATATCTGGTTCAT+TGG - chr2_4:63578466-63578485 Msa0341710:five_prime_UTR 30.0%
AGTTATCAGAGCAATCTTCT+TGG - chr2_4:63573160-63573179 Msa0341710:three_prime_UTR 35.0%
GTTATCAGAGCAATCTTCTT+GGG - chr2_4:63573161-63573180 Msa0341710:three_prime_UTR 35.0%
! GAGATGAGAAAGGTAGTTTT+TGG + chr2_4:63573427-63573446 None:intergenic 35.0%
TCAAAGGAACTTTAGCATTG+AGG + chr2_4:63573449-63573468 None:intergenic 35.0%
GCTAAAGTTCCTTTGATTCT+TGG - chr2_4:63573453-63573472 Msa0341710:intron 35.0%
CCTTTGATTCTTGGTATTTG+GGG - chr2_4:63573462-63573481 Msa0341710:intron 35.0%
AACCTGTTATTATGTCTGCT+GGG - chr2_4:63573544-63573563 Msa0341710:intron 35.0%
GAACTTGAATCTGAAAATGC+TGG - chr2_4:63573567-63573586 Msa0341710:intron 35.0%
TTTGTGCATACAACATAGCT+AGG + chr2_4:63573720-63573739 None:intergenic 35.0%
! TGCTCTAGACTCAGTATAAT+GGG + chr2_4:63573798-63573817 None:intergenic 35.0%
! TTGCTCTAGACTCAGTATAA+TGG + chr2_4:63573799-63573818 None:intergenic 35.0%
TTAAGGAAATGCGGAATCAT+TGG + chr2_4:63573836-63573855 None:intergenic 35.0%
ATGATCAATGACATTGATGC+TGG - chr2_4:63573915-63573934 Msa0341710:intron 35.0%
TAGTCTAATGAACGAAAAGG+GGG + chr2_4:63574020-63574039 None:intergenic 35.0%
! CAGGAAAAGTATGTTCAGTA+AGG + chr2_4:63574108-63574127 None:intergenic 35.0%
TGACCAATACTAACTCTTGT+AGG + chr2_4:63574207-63574226 None:intergenic 35.0%
!! GAGTTAGTATTGGTCAAGAT+TGG - chr2_4:63574211-63574230 Msa0341710:intron 35.0%
CATTAGCAATGTGATAGATG+AGG + chr2_4:63574524-63574543 None:intergenic 35.0%
TTCAGTATATCTTCCTGGTT+AGG + chr2_4:63574639-63574658 None:intergenic 35.0%
!!! AACTTTTTCAACTTCATCCC+TGG + chr2_4:63574697-63574716 None:intergenic 35.0%
TACTTATTCGTATGCCATGT+TGG - chr2_4:63574740-63574759 Msa0341710:intron 35.0%
! AGAACTTTTCTGAACCAACA+TGG + chr2_4:63574757-63574776 None:intergenic 35.0%
!! ATAAAAGAAGGGCACTCTAA+AGG + chr2_4:63574929-63574948 None:intergenic 35.0%
TATCAGGTCTGTTCTCATTT+AGG - chr2_4:63575008-63575027 Msa0341710:intron 35.0%
!! ACAGGAGATTCTTTTGAAAG+AGG + chr2_4:63575707-63575726 None:intergenic 35.0%
CCTTCTGGGCAAAAATAAAA+TGG + chr2_4:63575828-63575847 None:intergenic 35.0%
!!! CCATTTTATTTTTGCCCAGA+AGG - chr2_4:63575825-63575844 Msa0341710:intron 35.0%
! CTTGCATTTATACAGGTTGA+GGG + chr2_4:63575893-63575912 None:intergenic 35.0%
! TAAGGTGCTTGCATTTATAC+AGG + chr2_4:63575900-63575919 None:intergenic 35.0%
AGCAACTTGAACTAGTTCAT+TGG + chr2_4:63576026-63576045 None:intergenic 35.0%
!! GTTACCCTTTTGAAAAACCA+TGG + chr2_4:63576120-63576139 None:intergenic 35.0%
! TCTAGCACAAGGAATCTTTT+CGG + chr2_4:63576145-63576164 None:intergenic 35.0%
!!! AAGCCTTTTCTAGAATGAGA+AGG + chr2_4:63576191-63576210 None:intergenic 35.0%
TCTCGACAATTGACCATAAA+AGG - chr2_4:63576290-63576309 Msa0341710:intron 35.0%
AAGGTTACCCCTCAATATAA+TGG + chr2_4:63576531-63576550 None:intergenic 35.0%
ATTATATTGAGGGGTAACCT+TGG - chr2_4:63576530-63576549 Msa0341710:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr2_4:63576562-63576581 Msa0341710:intron 35.0%
CAGCCTCTTGTGTAAAAAAT+AGG - chr2_4:63576611-63576630 Msa0341710:intron 35.0%
GCTAATGACATACAAACTTG+TGG - chr2_4:63576765-63576784 Msa0341710:CDS 35.0%
AATGACATACAAACTTGTGG+TGG - chr2_4:63576768-63576787 Msa0341710:CDS 35.0%
!! TCTTAGTGGGTTGATGATAT+TGG - chr2_4:63576792-63576811 Msa0341710:CDS 35.0%
AAAGGATGACTATTTACCTC+TGG + chr2_4:63576888-63576907 None:intergenic 35.0%
AGCCAAAATTATTAGGGTCA+TGG - chr2_4:63577064-63577083 Msa0341710:intron 35.0%
! GACCATGACCCTAATAATTT+TGG + chr2_4:63577069-63577088 None:intergenic 35.0%
!! TGATGGATTCAAGAATGACA+TGG - chr2_4:63577177-63577196 Msa0341710:CDS 35.0%
ACAAGGTAAAATATCATGGG+TGG + chr2_4:63577781-63577800 None:intergenic 35.0%
AAAAGAATTGGCATGAGAGT+CGG + chr2_4:63577863-63577882 None:intergenic 35.0%
ACAATCATACATAATTCCCG+TGG + chr2_4:63578302-63578321 None:intergenic 35.0%
TCAAAAGTGGACCTTATTGA+AGG + chr2_4:63578335-63578354 None:intergenic 35.0%
!! AATAAGGTCCACTTTTGAAC+AGG - chr2_4:63578337-63578356 Msa0341710:CDS 35.0%
!! ATAAGGTCCACTTTTGAACA+GGG - chr2_4:63578338-63578357 Msa0341710:CDS 35.0%
! AGGATTTGGTTGTTATGTGG+CGG - chr2_4:63572966-63572985 Msa0341710:three_prime_UTR 40.0%
GAATTGGAATGGGAAGAAGT+TGG + chr2_4:63573051-63573070 None:intergenic 40.0%
CTAGAGAATTGCGAATGATG+TGG + chr2_4:63573090-63573109 None:intergenic 40.0%
GCAATCTTCTTGGGAAACTA+AGG - chr2_4:63573170-63573189 Msa0341710:three_prime_UTR 40.0%
TGGGAAACTAAGGATTCTGA+AGG - chr2_4:63573180-63573199 Msa0341710:three_prime_UTR 40.0%
AGAGACTATCTCTACAGACT+TGG - chr2_4:63573204-63573223 Msa0341710:CDS 40.0%
AAAGACATCGTCAATGATGC+CGG + chr2_4:63573271-63573290 None:intergenic 40.0%
ATCATTGACGATGTCTTTGC+CGG - chr2_4:63573273-63573292 Msa0341710:CDS 40.0%
! TAGCATTGAGGAGATGAGAA+AGG + chr2_4:63573437-63573456 None:intergenic 40.0%
CCCCAAATACCAAGAATCAA+AGG + chr2_4:63573465-63573484 None:intergenic 40.0%
TTGATTCTTGGTATTTGGGG+TGG - chr2_4:63573465-63573484 Msa0341710:intron 40.0%
TGAACTTATCTTTCGTGCCA+TGG - chr2_4:63573515-63573534 Msa0341710:intron 40.0%
GAACTTATCTTTCGTGCCAT+GGG - chr2_4:63573516-63573535 Msa0341710:intron 40.0%
AATAACAGGTTCAACTCCCA+TGG + chr2_4:63573535-63573554 None:intergenic 40.0%
GAACCTGTTATTATGTCTGC+TGG - chr2_4:63573543-63573562 Msa0341710:intron 40.0%
ACCTGTTATTATGTCTGCTG+GGG - chr2_4:63573545-63573564 Msa0341710:intron 40.0%
! ACTCAGTATAATGGGAGCAT+TGG + chr2_4:63573790-63573809 None:intergenic 40.0%
! AATGACATTGATGCTGGTCT+TGG - chr2_4:63573921-63573940 Msa0341710:intron 40.0%
AATGAACGAAAAGGGGGATA+TGG + chr2_4:63574014-63574033 None:intergenic 40.0%
CTCCTAGTGTTTCAGTTACT+TGG - chr2_4:63574070-63574089 Msa0341710:intron 40.0%
GACCAAGTAACTGAAACACT+AGG + chr2_4:63574075-63574094 None:intergenic 40.0%
TGTTTCAGTTACTTGGTCAG+CGG - chr2_4:63574077-63574096 Msa0341710:intron 40.0%
TATGCTCCATTGATACGTGA+TGG - chr2_4:63574297-63574316 Msa0341710:intron 40.0%
ATCCTTCCATCACGTATCAA+TGG + chr2_4:63574306-63574325 None:intergenic 40.0%
! ATTGATACGTGATGGAAGGA+TGG - chr2_4:63574305-63574324 Msa0341710:intron 40.0%
! GTTTTTGTCAGGTGCATTGT+TGG - chr2_4:63574408-63574427 Msa0341710:intron 40.0%
! TGTTTTCGTAAATGTGGCAC+AGG - chr2_4:63574610-63574629 Msa0341710:CDS 40.0%
ATGAGAAAGATGGCATATCC+AGG - chr2_4:63574676-63574695 Msa0341710:intron 40.0%
TGAGAAAGATGGCATATCCA+GGG - chr2_4:63574677-63574696 Msa0341710:intron 40.0%
CAGTACAAATTTGGCAAACG+AGG + chr2_4:63574985-63575004 None:intergenic 40.0%
!!! TATTTTGATACCGGCAGCAT+TGG - chr2_4:63575345-63575364 Msa0341710:intron 40.0%
ATCGCCTGAGATACTTTGTA+GGG - chr2_4:63575662-63575681 Msa0341710:intron 40.0%
! TACACCCTACAAAGTATCTC+AGG + chr2_4:63575669-63575688 None:intergenic 40.0%
TGAGATACTTTGTAGGGTGT+AGG - chr2_4:63575668-63575687 Msa0341710:intron 40.0%
GAGATACTTTGTAGGGTGTA+GGG - chr2_4:63575669-63575688 Msa0341710:intron 40.0%
!! CAAAAGCATTACAAAAGGGC+AGG + chr2_4:63575799-63575818 None:intergenic 40.0%
GCTTGCATTTATACAGGTTG+AGG + chr2_4:63575894-63575913 None:intergenic 40.0%
GTGCATACTGGATAGTTGAT+AGG + chr2_4:63575981-63576000 None:intergenic 40.0%
TCCAGTATGCACAAAGAAGT+TGG - chr2_4:63575989-63576008 Msa0341710:intron 40.0%
CTAGAATGAGAAGGCTGTAT+TGG + chr2_4:63576182-63576201 None:intergenic 40.0%
! CAGCCTTCTCATTCTAGAAA+AGG - chr2_4:63576185-63576204 Msa0341710:intron 40.0%
AATTTACACATTCAGCCTCC+TGG + chr2_4:63576375-63576394 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr2_4:63576643-63576662 Msa0341710:intron 40.0%
CATTAGCAGCAATCTTTGTG+CGG + chr2_4:63576752-63576771 None:intergenic 40.0%
!! AAACTTGTGGTGGATCTTAG+TGG - chr2_4:63576778-63576797 Msa0341710:CDS 40.0%
!! AACTTGTGGTGGATCTTAGT+GGG - chr2_4:63576779-63576798 Msa0341710:CDS 40.0%
!! TAGTGGGTTGATGATATTGG+AGG - chr2_4:63576795-63576814 Msa0341710:CDS 40.0%
TCCTGTATTTATTCCTCCAG+AGG - chr2_4:63576869-63576888 Msa0341710:intron 40.0%
! ACCTCTGGAGGAATAAATAC+AGG + chr2_4:63576873-63576892 None:intergenic 40.0%
CAGAACAGAACAGGAGAAAA+AGG + chr2_4:63576906-63576925 None:intergenic 40.0%
GTAGGCTAACTGATGGTAAT+TGG - chr2_4:63576938-63576957 Msa0341710:intron 40.0%
GATATATAGCATTGCTCGGT+GGG + chr2_4:63577267-63577286 None:intergenic 40.0%
TGATATATAGCATTGCTCGG+TGG + chr2_4:63577268-63577287 None:intergenic 40.0%
TAGCCAATAAAATCTCAGCC+TGG - chr2_4:63577326-63577345 Msa0341710:intron 40.0%
TAGCCAATAAAATCTCAGCC+TGG + chr2_4:63577326-63577345 None:intergenic 40.0%
ATCGTTATCTCTCTTGCACT+TGG - chr2_4:63577810-63577829 Msa0341710:intron 40.0%
! TCTCATGCCAATTCTTTTGC+TGG - chr2_4:63577865-63577884 Msa0341710:CDS 40.0%
ATGTTGGCCAGCAAAAGAAT+TGG + chr2_4:63577875-63577894 None:intergenic 40.0%
! TTCTTTTGCTGGCCAACATT+TGG - chr2_4:63577876-63577895 Msa0341710:CDS 40.0%
! TCTTTTGCTGGCCAACATTT+GGG - chr2_4:63577877-63577896 Msa0341710:CDS 40.0%
ATGTGTCTAACATAGCAGAC+AGG + chr2_4:63577906-63577925 None:intergenic 40.0%
ATCGATGCTTTACTTGAGTC+AGG - chr2_4:63578167-63578186 Msa0341710:CDS 40.0%
!! TAGAAAGCATGTTGGTTCTC+TGG - chr2_4:63578269-63578288 Msa0341710:CDS 40.0%
TGAAGTCGCTACCTTCAATA+AGG - chr2_4:63578321-63578340 Msa0341710:CDS 40.0%
AGAAGAACCCTGTTCAAAAG+TGG + chr2_4:63578348-63578367 None:intergenic 40.0%
! GGATTTGGTTGTTATGTGGC+GGG - chr2_4:63572967-63572986 Msa0341710:three_prime_UTR 45.0%
! GATTTGGTTGTTATGTGGCG+GGG - chr2_4:63572968-63572987 Msa0341710:three_prime_UTR 45.0%
TTGGAATGGGAAGAAGTTGG+CGG + chr2_4:63573048-63573067 None:intergenic 45.0%
GATAACATGAACATCGCCGT+TGG - chr2_4:63573237-63573256 Msa0341710:CDS 45.0%
! GTCTTTGCCGGCAATTTTCT+CGG - chr2_4:63573285-63573304 Msa0341710:CDS 45.0%
! CTTGGTATTTGGGGTGGTAA+AGG - chr2_4:63573471-63573490 Msa0341710:intron 45.0%
TCCCCAGCAGACATAATAAC+AGG + chr2_4:63573549-63573568 None:intergenic 45.0%
! ATTCTGGACGACTCTAGAAG+CGG + chr2_4:63573628-63573647 None:intergenic 45.0%
GTGCATACAACATAGCTAGG+TGG + chr2_4:63573717-63573736 None:intergenic 45.0%
! CTCCATTGATACGTGATGGA+AGG - chr2_4:63574301-63574320 Msa0341710:intron 45.0%
!!! CTTATTTTGCGTCGCTTCTG+AGG + chr2_4:63575166-63575185 None:intergenic 45.0%
! AACAACCAAGTCTTATCCCC+AGG + chr2_4:63575217-63575236 None:intergenic 45.0%
CCATAAAAGTCCAATGCTGC+CGG + chr2_4:63575358-63575377 None:intergenic 45.0%
! CTACAAAGTATCTCAGGCGA+TGG + chr2_4:63575663-63575682 None:intergenic 45.0%
CATCGCCTGAGATACTTTGT+AGG - chr2_4:63575661-63575680 Msa0341710:intron 45.0%
CATTACAAAAGGGCAGGACT+AGG + chr2_4:63575793-63575812 None:intergenic 45.0%
ATCACTTCACAACGCCTTCT+GGG + chr2_4:63575842-63575861 None:intergenic 45.0%
AATCACTTCACAACGCCTTC+TGG + chr2_4:63575843-63575862 None:intergenic 45.0%
GCCAACTTCTTTGTGCATAC+TGG + chr2_4:63575993-63576012 None:intergenic 45.0%
GTATGCACAAAGAAGTTGGC+AGG - chr2_4:63575993-63576012 Msa0341710:intron 45.0%
GAAAGCCACCATCAAACACT+GGG + chr2_4:63576067-63576086 None:intergenic 45.0%
AGAAAGCCACCATCAAACAC+TGG + chr2_4:63576068-63576087 None:intergenic 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr2_4:63576566-63576585 Msa0341710:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr2_4:63576606-63576625 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr2_4:63576639-63576658 Msa0341710:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr2_4:63576642-63576661 Msa0341710:intron 45.0%
GGATGACTATTTACCTCTGG+AGG + chr2_4:63576885-63576904 None:intergenic 45.0%
ACAACAGGACAGAACAGAAC+AGG + chr2_4:63576915-63576934 None:intergenic 45.0%
TTCTGTTCTGTCCTGTTGTG+TGG - chr2_4:63576916-63576935 Msa0341710:intron 45.0%
TTGTGTGGTAGGCTAACTGA+TGG - chr2_4:63576931-63576950 Msa0341710:intron 45.0%
CAATAAAATCTCAGCCTGGC+CGG - chr2_4:63577330-63577349 Msa0341710:intron 45.0%
TCAGCCTGGCTGAAAATCAT+GGG + chr2_4:63577510-63577529 None:intergenic 45.0%
! CAGCCAGGCTGAGATTTTAT+TGG - chr2_4:63577518-63577537 Msa0341710:intron 45.0%
CAGACAGGATACCCAAATGT+TGG + chr2_4:63577891-63577910 None:intergenic 45.0%
!!! AGTTGCAAATGTTTTGGGGG+AGG - chr2_4:63577978-63577997 Msa0341710:CDS 45.0%
! TCTGGTTCATTGGAACTGCA+TGG - chr2_4:63578476-63578495 Msa0341710:five_prime_UTR 45.0%
GAGGAGGATTCCTGAACTGA+TGG - chr2_4:63572999-63573018 Msa0341710:three_prime_UTR 50.0%
GTCTCTGCCGAGAAAATTGC+CGG + chr2_4:63573295-63573314 None:intergenic 50.0%
! ATTTGGGGTGGTAAAGGCCA+AGG - chr2_4:63573477-63573496 Msa0341710:intron 50.0%
TCTGAAAATGCTGGTGAGCC+TGG - chr2_4:63573576-63573595 Msa0341710:intron 50.0%
CGCTCACGAATCAATCTTCC+AGG + chr2_4:63573597-63573616 None:intergenic 50.0%
!! GATGCTGGTCTTGGTCGATT+TGG - chr2_4:63573930-63573949 Msa0341710:intron 50.0%
! ACCAAGTCTTATCCCCAGGT+GGG + chr2_4:63575213-63575232 None:intergenic 50.0%
! AACCAAGTCTTATCCCCAGG+TGG + chr2_4:63575214-63575233 None:intergenic 50.0%
!! CCGGCAGCATTGGACTTTTA+TGG - chr2_4:63575355-63575374 Msa0341710:intron 50.0%
TACTTTGTAGGGTGTAGGGC+TGG - chr2_4:63575673-63575692 Msa0341710:intron 50.0%
ATCAAACACTGGGCAGCATC+GGG + chr2_4:63576057-63576076 None:intergenic 50.0%
CATCAAACACTGGGCAGCAT+CGG + chr2_4:63576058-63576077 None:intergenic 50.0%
AGAGAGAACCCTGAATGCAG+TGG - chr2_4:63576344-63576363 Msa0341710:intron 50.0%
TGGATACGCCACTGCATTCA+GGG + chr2_4:63576355-63576374 None:intergenic 50.0%
TACTGGGAAACACATTCCCC+TGG + chr2_4:63576438-63576457 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr2_4:63576550-63576569 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr2_4:63576572-63576591 Msa0341710:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr2_4:63576573-63576592 Msa0341710:intron 50.0%
CTAAAGCTCCCGCATATGCA+GGG + chr2_4:63576682-63576701 None:intergenic 50.0%
ACTAAAGCTCCCGCATATGC+AGG + chr2_4:63576683-63576702 None:intergenic 50.0%
GTTCTGTCCTGTTGTGTGGT+AGG - chr2_4:63576920-63576939 Msa0341710:intron 50.0%
! CAGTTAGCCTACCACACAAC+AGG + chr2_4:63576930-63576949 None:intergenic 50.0%
! CGGCCAGGCTGAGATTTTAT+TGG + chr2_4:63577332-63577351 None:intergenic 50.0%
!! AAATCATGGGGTGGTGGGTA+CGG + chr2_4:63577497-63577516 None:intergenic 50.0%
GCTGAAAATCATGGGGTGGT+GGG + chr2_4:63577502-63577521 None:intergenic 50.0%
CAGCCTGGCTGAAAATCATG+GGG + chr2_4:63577509-63577528 None:intergenic 50.0%
CTCAGCCTGGCTGAAAATCA+TGG + chr2_4:63577511-63577530 None:intergenic 50.0%
GGTTCATTGGAACTGCATGG+TGG - chr2_4:63578479-63578498 Msa0341710:five_prime_UTR 50.0%
! GGTTGTTATGTGGCGGGGAA+TGG - chr2_4:63572973-63572992 Msa0341710:three_prime_UTR 55.0%
! ATGTGGCGGGGAATGGAAAG+AGG - chr2_4:63572980-63572999 Msa0341710:three_prime_UTR 55.0%
AGCAGCTTCGCCATCAGTTC+AGG + chr2_4:63573012-63573031 None:intergenic 55.0%
! CCAAGTCTTATCCCCAGGTG+GGG + chr2_4:63575212-63575231 None:intergenic 55.0%
CAAAAGGGCAGGACTAGGAG+TGG + chr2_4:63575788-63575807 None:intergenic 55.0%
TCAAACACTGGGCAGCATCG+GGG + chr2_4:63576056-63576075 None:intergenic 55.0%
CGATGCTGCCCAGTGTTTGA+TGG - chr2_4:63576056-63576075 Msa0341710:CDS 55.0%
TGCTGCCCAGTGTTTGATGG+TGG - chr2_4:63576059-63576078 Msa0341710:CDS 55.0%
CTGGATACGCCACTGCATTC+AGG + chr2_4:63576356-63576375 None:intergenic 55.0%
CTGAATGCAGTGGCGTATCC+AGG - chr2_4:63576354-63576373 Msa0341710:intron 55.0%
AATGCAGTGGCGTATCCAGG+AGG - chr2_4:63576357-63576376 Msa0341710:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr2_4:63576585-63576604 Msa0341710:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr2_4:63576687-63576706 Msa0341710:intron 55.0%
TCAGCCTGGCCGGAAATCAT+GGG - chr2_4:63577340-63577359 Msa0341710:intron 55.0%
ACCCACCACCCCATGATTTC+CGG + chr2_4:63577352-63577371 None:intergenic 55.0%
GGCTGAAAATCATGGGGTGG+TGG + chr2_4:63577503-63577522 None:intergenic 55.0%
CCTGGCTGAAAATCATGGGG+TGG + chr2_4:63577506-63577525 None:intergenic 55.0%
! CCACCCCATGATTTTCAGCC+AGG - chr2_4:63577503-63577522 Msa0341710:intron 55.0%
GGTTCTCTGGTGCAAGTCCA+CGG - chr2_4:63578282-63578301 Msa0341710:CDS 55.0%
GTTCTCTGGTGCAAGTCCAC+GGG - chr2_4:63578283-63578302 Msa0341710:CDS 55.0%
TGGCGGGGAATGGAAAGAGG+AGG - chr2_4:63572983-63573002 Msa0341710:three_prime_UTR 60.0%
ATCGCCGTTGGTCAACGTGC+CGG - chr2_4:63573249-63573268 Msa0341710:CDS 60.0%
GATGCCGGCACGTTGACCAA+CGG + chr2_4:63573256-63573275 None:intergenic 60.0%
GTCTTATCCCCAGGTGGGGT+CGG + chr2_4:63575208-63575227 None:intergenic 60.0%
CCCCACCTGGGGATAAGACT+TGG - chr2_4:63575209-63575228 Msa0341710:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr2_4:63576539-63576558 Msa0341710:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr2_4:63576655-63576674 Msa0341710:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr2_4:63576670-63576689 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr2_4:63576671-63576690 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr2_4:63576670-63576689 Msa0341710:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr2_4:63576671-63576690 Msa0341710:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr2_4:63576688-63576707 Msa0341710:intron 60.0%
CTCAGCCTGGCCGGAAATCA+TGG - chr2_4:63577339-63577358 Msa0341710:intron 60.0%
CAGCCTGGCCGGAAATCATG+GGG - chr2_4:63577341-63577360 Msa0341710:intron 60.0%
GCCGGAAATCATGGGGTGGT+GGG - chr2_4:63577348-63577367 Msa0341710:intron 60.0%
!! TGGGGTGGTGGGTACGGAAA+AGG + chr2_4:63577491-63577510 None:intergenic 60.0%
GTGGCACAGGCAGCCTAACC+AGG - chr2_4:63574623-63574642 Msa0341710:CDS 65.0%
TCCATGTAGCCGACCCCACC+TGG - chr2_4:63575196-63575215 Msa0341710:intron 65.0%
CCATGTAGCCGACCCCACCT+GGG - chr2_4:63575197-63575216 Msa0341710:intron 65.0%
CATGTAGCCGACCCCACCTG+GGG - chr2_4:63575198-63575217 Msa0341710:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr2_4:63576657-63576676 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr2_4:63576672-63576691 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr2_4:63576676-63576695 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr2_4:63576677-63576696 None:intergenic 65.0%
CCACCCCATGATTTCCGGCC+AGG + chr2_4:63577347-63577366 None:intergenic 65.0%
CCTGGCCGGAAATCATGGGG+TGG - chr2_4:63577344-63577363 Msa0341710:intron 65.0%
GGCCGGAAATCATGGGGTGG+TGG - chr2_4:63577347-63577366 Msa0341710:intron 65.0%
CCCAGGTGGGGTCGGCTACA+TGG + chr2_4:63575200-63575219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63572942 63578530 63572942 ID=Msa0341710;Name=Msa0341710
chr2_4 mRNA 63572942 63578530 63572942 ID=Msa0341710-mRNA-1;Parent=Msa0341710;Name=Msa0341710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=76|1|1|1|1|1|7|262|417
chr2_4 exon 63572942 63573311 63572942 ID=Msa0341710-mRNA-1:exon:20291;Parent=Msa0341710-mRNA-1
chr2_4 exon 63574582 63574674 63574582 ID=Msa0341710-mRNA-1:exon:20290;Parent=Msa0341710-mRNA-1
chr2_4 exon 63576055 63576110 63576055 ID=Msa0341710-mRNA-1:exon:20289;Parent=Msa0341710-mRNA-1
chr2_4 exon 63576734 63576840 63576734 ID=Msa0341710-mRNA-1:exon:20288;Parent=Msa0341710-mRNA-1
chr2_4 exon 63577132 63577333 63577132 ID=Msa0341710-mRNA-1:exon:20287;Parent=Msa0341710-mRNA-1
chr2_4 exon 63577521 63577575 63577521 ID=Msa0341710-mRNA-1:exon:20286;Parent=Msa0341710-mRNA-1
chr2_4 exon 63577822 63578530 63577822 ID=Msa0341710-mRNA-1:exon:20285;Parent=Msa0341710-mRNA-1
chr2_4 five_prime_UTR 63578455 63578530 63578455 ID=Msa0341710-mRNA-1:five_prime_utr;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63577822 63578454 63577822 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63577521 63577575 63577521 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63577132 63577333 63577132 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63576734 63576840 63576734 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63576055 63576110 63576055 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63574582 63574674 63574582 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 CDS 63573204 63573311 63573204 ID=Msa0341710-mRNA-1:cds;Parent=Msa0341710-mRNA-1
chr2_4 three_prime_UTR 63572942 63573203 63572942 ID=Msa0341710-mRNA-1:three_prime_utr;Parent=Msa0341710-mRNA-1
Gene Sequence

>Msa0341710

ATGGCGAAGCTGCTATTACTTCTACGACCGCCAACTTCTTCCCATTCCAATTCATTCTCATTCAAAAAACCACATCATTCGCAATTCTCTAGCTGTGTTCGCTGCTGCAGTACTAGTGATGATGATGAAAAGAACAAGAAGAAGTTATCAGAGCAATCTTCTTGGGAAACTAAGGATTCTGAAGGAAGAGACTATCTCTACAGACTTGGCGCTGAAGCTGATAACATGAACATCGCCGTTGGTCAACGTGCCGGCATCATTGACGATGTCTTTGCCGGCAATTTTCTCGGCAGAGACTCCGACATTGTCTTTGATTATCGTCAGAAAGTCACTAGATCATTTCAATACCTTCAAGGAGATTATTACATTGCTCCTCTTTTTATGGACAAAGTTGTTACTCACATTACCAAAAACTACCTTTCTCATCTCCTCAATGCTAAAGTTCCTTTGATTCTTGGTATTTGGGGTGGTAAAGGCCAAGGTAAAACTTTTCAAACTGAACTTATCTTTCGTGCCATGGGAGTTGAACCTGTTATTATGTCTGCTGGGGAACTTGAATCTGAAAATGCTGGTGAGCCTGGAAGATTGATTCGTGAGCGCTACAGAACCGCTTCTAGAGTCGTCCAGAATCAAGGAAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGTCTTGGTCGATTTGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTATGTGACAATCCTACAAGAGTTAGTATTGGTCAAGATTGGCGAGAAGCAGATGTCACAAACAGAATTCCAATCATTGTAACAGGAAATGATCTTTCAACTATTTATGCTCCATTGATACGTGATGGAAGGATGGATAAATTTTACTGGCAGCCTAACCAGGAAGATATACTGAATATTGTTCAAAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGAAAAAGTTGTGAAAACTTTTCCTAATCAAGCATTGGACTTTTATGGAGCTCTAAGATCGCGTACATATGACAGATCTATTTTAAAGTGGGTTGATGATATTGGAGGTGCTGAAAGTTTTGCATCCAAATTTCTCAAAAGAAGAAAGGACCAGAATCTTCCTGTATTTATTCCTCCAGAGCAAACGATCGATGCTTTACTTGAGTCAGGTTATTCTCTGCTCAAAGAACAACAGTTGATAATGGAAACTAAACTTTCGAAGGAATACATGAAGAACATTGAAGACTAA

Protein sequence

>Msa0341710

MAKLLLLLRPPTSSHSNSFSFKKPHHSQFSSCVRCCSTSDDDEKNKKKLSEQSSWETKDSEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGRLIRERYRTASRVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED*