AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902810 MtrunA17_Chr3g0115281 91.803 305 19 2 1 300 1 304 0.0 536
Msa0902810 MtrunA17_Chr7g0254481 45.249 221 117 2 63 279 84 304 4.66e-59 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902810 AT1G36390.1 47.893 261 114 4 31 286 31 274 1.01e-70 220
Msa0902810 AT1G36390.2 47.893 261 114 4 31 286 31 274 1.01e-70 220
Msa0902810 AT5G17710.3 47.895 190 99 0 90 279 113 302 4.62e-55 181
Msa0902810 AT5G17710.1 47.895 190 99 0 90 279 113 302 4.62e-55 181
Msa0902810 AT5G17710.2 47.895 190 99 0 90 279 115 304 5.67e-55 181

Find 92 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTTTCATCATTGAAAA+AGG 0.177252 6_1:-102687475 Msa0902810:three_prime_UTR
TTTCAAGAAAGAACAATTTC+TGG 0.178679 6_1:+102687395 None:intergenic
TGAACGAAATTGGGCGGTTT+TGG 0.192297 6_1:+102689832 None:intergenic
GATAGTGTTGGAGGCGTAAA+AGG 0.207213 6_1:+102689795 None:intergenic
ACAAGATTTACCAAGCTTAT+TGG 0.223350 6_1:-102689484 Msa0902810:CDS
TAACTTACCAAAGGATTAAA+AGG 0.227686 6_1:+102689048 None:intergenic
AGATGGAAAATGAACGAAAT+TGG 0.243655 6_1:+102689822 None:intergenic
CTTTCTTGTATGCTTTAATA+AGG 0.254294 6_1:+102689460 None:intergenic
TGAGGAGTCCGAAGTGTTTA+AGG 0.256357 6_1:-102687823 Msa0902810:CDS
TACACTTGAAAAGGAATCTT+TGG 0.266699 6_1:+102689729 None:intergenic
GAAATGCTTCTGTTGTTCTA+TGG 0.299320 6_1:-102687557 Msa0902810:three_prime_UTR
TACGCCTCCAACACTATCTT+GGG 0.323136 6_1:-102689790 Msa0902810:CDS
GTTTGTTGGTTGGTAATTAC+TGG 0.331283 6_1:+102689983 None:intergenic
GAAGCGAAGAGGGAGGAGAT+TGG 0.344456 6_1:+102689751 None:intergenic
TTGATGGCTGCTCCAAGGAC+TGG 0.358588 6_1:+102687682 None:intergenic
TACAAGAAAGCCTTTCTTAA+CGG 0.370413 6_1:-102689447 Msa0902810:CDS
TCAGAAAGTATCTAGTTTAT+CGG 0.373978 6_1:-102689355 Msa0902810:CDS
TCAATTCTAGCAGCTGTTGA+TGG 0.374139 6_1:+102687666 None:intergenic
TTACGCCTCCAACACTATCT+TGG 0.379201 6_1:-102689791 Msa0902810:CDS
CTTTCTATCGCCGTTAAGAA+AGG 0.383363 6_1:+102689437 None:intergenic
TCTCTCGAATCAATCTCTAT+TGG 0.404166 6_1:-102689899 Msa0902810:CDS
GGATTTATGCAAGGTGCATA+AGG 0.409734 6_1:-102690016 Msa0902810:five_prime_UTR
GAGTGCCTGACAAAATATTA+AGG 0.411237 6_1:+102687284 None:intergenic
GCACTTGTGAAGGTTTCCTT+AGG 0.414176 6_1:-102687738 Msa0902810:CDS
TAATTTCTGTATTAACGAAC+GGG 0.419446 6_1:+102689937 None:intergenic
AGCAATTTGTAGAGACTTTG+AGG 0.424003 6_1:-102689107 Msa0902810:CDS
CCTAGTTCCACCTGCTTACC+TGG 0.428365 6_1:-102687601 Msa0902810:three_prime_UTR
AGTGGCATCTACCCAGTCCT+TGG 0.435806 6_1:-102687694 Msa0902810:CDS
GATGGAAAATGAACGAAATT+GGG 0.447787 6_1:+102689823 None:intergenic
TCTGTTGTTCTATGGTATGT+TGG 0.451289 6_1:-102687549 Msa0902810:three_prime_UTR
AGGTTTCTTGCTCAAAGATA+AGG 0.453331 6_1:-102687772 Msa0902810:CDS
GTGAAGGTTTCCTTAGGTCC+CGG 0.454329 6_1:-102687732 Msa0902810:CDS
TGCTCAAAGATAAGGTTGTA+AGG 0.460819 6_1:-102687764 Msa0902810:CDS
GAGGAGATTGGATTGAGAGT+TGG 0.467807 6_1:+102689763 None:intergenic
ATGTTGTGGAAGTTGTTTGT+TGG 0.467990 6_1:+102689969 None:intergenic
CCAGGTAAGCAGGTGGAACT+AGG 0.468157 6_1:+102687601 None:intergenic
AACTCTACGCATCAAAATCA+TGG 0.470462 6_1:+102687355 None:intergenic
GAGAGAGCGTACACTTGAAA+AGG 0.470698 6_1:+102689720 None:intergenic
GGAAAGAATTAGCATTCAAT+CGG 0.485047 6_1:-102689256 Msa0902810:CDS
TGATGGCTGCTCCAAGGACT+GGG 0.486960 6_1:+102687683 None:intergenic
GTGTAGGAAGCAATTATGTT+GGG 0.499354 6_1:-102690037 None:intergenic
ATAGTGTTGGAGGCGTAAAA+GGG 0.500197 6_1:+102689796 None:intergenic
ATCATAGACTATACTCACTT+GGG 0.505532 6_1:+102687525 None:intergenic
ACAACAGATTGAAGCGGAAA+CGG 0.508186 6_1:-102689172 Msa0902810:CDS
TATCAAAATCCGCTTGCAAA+CGG 0.510414 6_1:+102689301 None:intergenic
GGTGTAGGAAGCAATTATGT+TGG 0.513567 6_1:-102690038 None:intergenic
AAGGAAACCTTCACAAGTGC+TGG 0.513889 6_1:+102687741 None:intergenic
TGTGGAAGTTGTTTGTTGGT+TGG 0.515497 6_1:+102689973 None:intergenic
TTAATAAGGACCAATAAGCT+TGG 0.526487 6_1:+102689474 None:intergenic
TAACAAGATACCAGGTAAGC+AGG 0.530415 6_1:+102687591 None:intergenic
TGAAGGTTTCCTTAGGTCCC+GGG 0.534603 6_1:-102687731 Msa0902810:CDS
ATAATTTCTGTATTAACGAA+CGG 0.537744 6_1:+102689936 None:intergenic
TACAATCAAAAGCAATTGAA+AGG 0.537877 6_1:-102689389 Msa0902810:CDS
GGAATCTTTGGAAGCGAAGA+GGG 0.541715 6_1:+102689741 None:intergenic
GAGTCCGAAGTGTTTAAGGA+AGG 0.560329 6_1:-102687819 Msa0902810:CDS
ATGATAAAACAGACGAGACT+CGG 0.560686 6_1:-102689521 Msa0902810:CDS
GAGGAGTCATCATGTTTCTG+TGG 0.562710 6_1:-102689088 Msa0902810:CDS
GTTTCTGTGGTAGCTACAGT+TGG 0.563597 6_1:-102689075 Msa0902810:CDS
AATCCCTTCCTTAAACACTT+CGG 0.563851 6_1:+102687815 None:intergenic
TGTATTAACGAACGGGACGG+AGG 0.564312 6_1:+102689944 None:intergenic
AGGAATCTTTGGAAGCGAAG+AGG 0.565783 6_1:+102689740 None:intergenic
TATCATAGACTATACTCACT+TGG 0.567328 6_1:+102687524 None:intergenic
TGTAAGGCCAGCACTTGTGA+AGG 0.574016 6_1:-102687748 Msa0902810:CDS
GAGGCGTAAAAGGGGCGAGA+TGG 0.577768 6_1:+102689805 None:intergenic
AGCTGTTGATGGCTGCTCCA+AGG 0.578183 6_1:+102687677 None:intergenic
TTTGAGCAAGAAACCTCGAC+GGG 0.582305 6_1:+102687779 None:intergenic
AAACCCCAAGATAGTGTTGG+AGG 0.582311 6_1:+102689786 None:intergenic
ACATGAAGCCGTTGGACGTG+AGG 0.584494 6_1:-102687841 Msa0902810:CDS
ATTATGTTGGGATTTATGCA+AGG 0.588887 6_1:-102690025 Msa0902810:five_prime_UTR
GCAATATCTCCGTTTGCAAG+CGG 0.589266 6_1:-102689310 Msa0902810:CDS
AGTCCGAAGTGTTTAAGGAA+GGG 0.590140 6_1:-102687818 Msa0902810:CDS
TGGAAACCCCAAGATAGTGT+TGG 0.598052 6_1:+102689783 None:intergenic
GTATTAACGAACGGGACGGA+GGG 0.600955 6_1:+102689945 None:intergenic
CTTTAGGAAAAGATGTGAGA+AGG 0.603142 6_1:-102689277 Msa0902810:CDS
TTGGTTGGTAATTACTGGAG+CGG 0.605396 6_1:+102689988 None:intergenic
TTGCAGATACATGAAGCCGT+TGG 0.609028 6_1:-102687849 Msa0902810:intron
TTCGGACTCCTCACGTCCAA+CGG 0.617680 6_1:+102687833 None:intergenic
AGTTAAACAACAGATTGAAG+CGG 0.621582 6_1:-102689178 Msa0902810:CDS
ATCTTTGGAAGCGAAGAGGG+AGG 0.628356 6_1:+102689744 None:intergenic
ACGCCTCCAACACTATCTTG+GGG 0.631610 6_1:-102689789 Msa0902810:CDS
GAAAGTATCTAGTTTATCGG+CGG 0.637283 6_1:-102689352 Msa0902810:CDS
TTTAGCAATAACAAGATACC+AGG 0.638195 6_1:+102687583 None:intergenic
TCATAGACTATACTCACTTG+GGG 0.638405 6_1:+102687526 None:intergenic
GGAAAATGAACGAAATTGGG+CGG 0.641924 6_1:+102689826 None:intergenic
CTTTGAGCAAGAAACCTCGA+CGG 0.642365 6_1:+102687778 None:intergenic
TTCTGTATTAACGAACGGGA+CGG 0.644353 6_1:+102689941 None:intergenic
TTAATACAGAAATTATACAA+TGG 0.659818 6_1:-102689929 Msa0902810:exon
CAAGATACCAGGTAAGCAGG+TGG 0.662145 6_1:+102687594 None:intergenic
TATTTCTTCAATCAACAATG+CGG 0.663325 6_1:+102689413 None:intergenic
TAGTGTTGGAGGCGTAAAAG+GGG 0.663351 6_1:+102689797 None:intergenic
ACGGGACGGAGGGTATGTTG+TGG 0.665197 6_1:+102689955 None:intergenic
ATAATTAAAGAATCCCGTCG+AGG 0.675021 6_1:-102687792 Msa0902810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTATATTTCTTTTTTA+GGG + chr6_1:102688804-102688823 None:intergenic 10.0%
!!! AAATACTATATTTCTTTTTT+AGG + chr6_1:102688805-102688824 None:intergenic 10.0%
!! TAAAAAAGAAATATAGTATT+TGG - chr6_1:102688804-102688823 Msa0902810:intron 10.0%
!! TGAAAAATTTATGAATTTAT+TGG - chr6_1:102689888-102689907 Msa0902810:CDS 10.0%
!! TTAATACAGAAATTATACAA+TGG - chr6_1:102687395-102687414 Msa0902810:three_prime_UTR 15.0%
!!! ATACTATATTTCTTTTTTAG+GGG + chr6_1:102688803-102688822 None:intergenic 15.0%
!!! AACAAATTAGTTTTTTTGTT+TGG - chr6_1:102688932-102688951 Msa0902810:intron 15.0%
!!! ACAAATTAGTTTTTTTGTTT+GGG - chr6_1:102688933-102688952 Msa0902810:intron 15.0%
!!! AAAAACTGTAATTTGTAATT+TGG + chr6_1:102689092-102689111 None:intergenic 15.0%
!! ATAATTTCTGTATTAACGAA+CGG + chr6_1:102687391-102687410 None:intergenic 20.0%
!!! TTTCAAATTTAACTTACCAA+AGG + chr6_1:102688288-102688307 None:intergenic 20.0%
!!! TTTTGTTTGGGAATTTTATA+CGG - chr6_1:102688945-102688964 Msa0902810:intron 20.0%
!! AAATTAAACAATAGCAATGT+AGG + chr6_1:102689437-102689456 None:intergenic 20.0%
!!! GCTATTGTTTAATTTGTTTT+TGG - chr6_1:102689442-102689461 Msa0902810:CDS 20.0%
! TAATTTCTGTATTAACGAAC+GGG + chr6_1:102687390-102687409 None:intergenic 25.0%
! CTTTCTTGTATGCTTTAATA+AGG + chr6_1:102687867-102687886 None:intergenic 25.0%
! TATTTCTTCAATCAACAATG+CGG + chr6_1:102687914-102687933 None:intergenic 25.0%
! TACAATCAAAAGCAATTGAA+AGG - chr6_1:102687935-102687954 Msa0902810:intron 25.0%
!!! TCAGAAAGTATCTAGTTTAT+CGG - chr6_1:102687969-102687988 Msa0902810:intron 25.0%
! CATTAAAAAACTTCTGTTGA+TGG - chr6_1:102688107-102688126 Msa0902810:intron 25.0%
! TAACTTACCAAAGGATTAAA+AGG + chr6_1:102688279-102688298 None:intergenic 25.0%
! CTGATTTAAATATCGATACA+AGG + chr6_1:102688314-102688333 None:intergenic 25.0%
! TTGTTCTATAATATGCTATG+TGG + chr6_1:102688471-102688490 None:intergenic 25.0%
! AGCATATTATAGAACAATAG+CGG - chr6_1:102688474-102688493 Msa0902810:intron 25.0%
! ATTATGGATTTATGACTGTA+AGG - chr6_1:102688672-102688691 Msa0902810:intron 25.0%
!! CTTTTAGTATCTTAAAATCG+TGG + chr6_1:102688724-102688743 None:intergenic 25.0%
!!! AGATGAGATGTTATTTGTTT+TGG - chr6_1:102688750-102688769 Msa0902810:intron 25.0%
!!! GAAAAATGTTTTTGCAAGAA+TGG - chr6_1:102688899-102688918 Msa0902810:intron 25.0%
!! TTTGTTTGGGAATTTTATAC+GGG - chr6_1:102688946-102688965 Msa0902810:intron 25.0%
!!! CTGTTTTTATGTTATGTCTA+AGG - chr6_1:102689044-102689063 Msa0902810:intron 25.0%
!! ATCAAATGACCTTTTCTTTA+TGG - chr6_1:102689123-102689142 Msa0902810:CDS 25.0%
! TCAAATTAGCCATAAAGAAA+AGG + chr6_1:102689135-102689154 None:intergenic 25.0%
! TTTATGGCTAATTTGATTGT+TGG - chr6_1:102689139-102689158 Msa0902810:CDS 25.0%
!!! TAGTTTTCAAGCATATAATG+TGG + chr6_1:102689354-102689373 None:intergenic 25.0%
! TATGCTTGAAAACTAAAATG+TGG - chr6_1:102689359-102689378 Msa0902810:CDS 25.0%
! TTTCGTTTCATCATTGAAAA+AGG - chr6_1:102689849-102689868 Msa0902810:CDS 25.0%
! TTCGTTTCATCATTGAAAAA+GGG - chr6_1:102689850-102689869 Msa0902810:CDS 25.0%
! TTTCAAGAAAGAACAATTTC+TGG + chr6_1:102689932-102689951 None:intergenic 25.0%
ATTATGTTGGGATTTATGCA+AGG - chr6_1:102687299-102687318 Msa0902810:three_prime_UTR 30.0%
GATGGAAAATGAACGAAATT+GGG + chr6_1:102687504-102687523 None:intergenic 30.0%
AGATGGAAAATGAACGAAAT+TGG + chr6_1:102687505-102687524 None:intergenic 30.0%
TACACTTGAAAAGGAATCTT+TGG + chr6_1:102687598-102687617 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTTG+GGG + chr6_1:102687728-102687747 None:intergenic 30.0%
!! GCTTATTTTCATAAGCTCTT+GGG + chr6_1:102687729-102687748 None:intergenic 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG + chr6_1:102687730-102687749 None:intergenic 30.0%
ACAAGATTTACCAAGCTTAT+TGG - chr6_1:102687840-102687859 Msa0902810:CDS 30.0%
TTAATAAGGACCAATAAGCT+TGG + chr6_1:102687853-102687872 None:intergenic 30.0%
TACAAGAAAGCCTTTCTTAA+CGG - chr6_1:102687877-102687896 Msa0902810:intron 30.0%
!! AAGCGGATTTTGATAACTTT+AGG - chr6_1:102688031-102688050 Msa0902810:intron 30.0%
GGAAAGAATTAGCATTCAAT+CGG - chr6_1:102688068-102688087 Msa0902810:intron 30.0%
! TAAAAAACTTCTGTTGATGG+TGG - chr6_1:102688110-102688129 Msa0902810:intron 30.0%
AGTTAAACAACAGATTGAAG+CGG - chr6_1:102688146-102688165 Msa0902810:intron 30.0%
TTGTCAAACAACTTCTATAG+TGG + chr6_1:102688439-102688458 None:intergenic 30.0%
AATTTCATCACTCACTATCA+GGG + chr6_1:102688533-102688552 None:intergenic 30.0%
CAGATATTTGCTTGTGATTA+TGG - chr6_1:102688656-102688675 Msa0902810:intron 30.0%
!! GATTCGACAAAGTTTTATGT+TGG - chr6_1:102688840-102688859 Msa0902810:intron 30.0%
!! TGTTTTTGCAAGAATGGTTT+TGG - chr6_1:102688905-102688924 Msa0902810:intron 30.0%
!!! ATACATCTTACTTTTTCCTC+TGG - chr6_1:102689245-102689264 Msa0902810:CDS 30.0%
! AAGATATTTTCACTTTCCAG+AGG + chr6_1:102689264-102689283 None:intergenic 30.0%
!! CTTGTTTTCCAATCATATCT+GGG - chr6_1:102689320-102689339 Msa0902810:CDS 30.0%
TCATCTAATATGCCTTCTAT+AGG + chr6_1:102689397-102689416 None:intergenic 30.0%
!!! ACTGAAGATTTTTTATTCCC+GGG + chr6_1:102689613-102689632 None:intergenic 30.0%
!!! CACTGAAGATTTTTTATTCC+CGG + chr6_1:102689614-102689633 None:intergenic 30.0%
TTTAGCAATAACAAGATACC+AGG + chr6_1:102689744-102689763 None:intergenic 30.0%
ATCATAGACTATACTCACTT+GGG + chr6_1:102689802-102689821 None:intergenic 30.0%
TATCATAGACTATACTCACT+TGG + chr6_1:102689803-102689822 None:intergenic 30.0%
! GTTTTTACAACATGTAATGC+AGG - chr6_1:102689989-102690008 Msa0902810:five_prime_UTR 30.0%
!! GTTTGTTGGTTGGTAATTAC+TGG + chr6_1:102687344-102687363 None:intergenic 35.0%
ATGTTGTGGAAGTTGTTTGT+TGG + chr6_1:102687358-102687377 None:intergenic 35.0%
TCTCTCGAATCAATCTCTAT+TGG - chr6_1:102687425-102687444 Msa0902810:three_prime_UTR 35.0%
ATGATAAAACAGACGAGACT+CGG - chr6_1:102687803-102687822 Msa0902810:CDS 35.0%
!! GAAAGTATCTAGTTTATCGG+CGG - chr6_1:102687972-102687991 Msa0902810:intron 35.0%
TATCAAAATCCGCTTGCAAA+CGG + chr6_1:102688026-102688045 None:intergenic 35.0%
! CTTTAGGAAAAGATGTGAGA+AGG - chr6_1:102688047-102688066 Msa0902810:intron 35.0%
AGCAATTTGTAGAGACTTTG+AGG - chr6_1:102688217-102688236 Msa0902810:intron 35.0%
TTGAGCAATGTTGTCAATCA+CGG - chr6_1:102688364-102688383 Msa0902810:intron 35.0%
ATAAAATTCCGCTGCACAAT+AGG - chr6_1:102688404-102688423 Msa0902810:intron 35.0%
TAAAATTCCGCTGCACAATA+GGG - chr6_1:102688405-102688424 Msa0902810:intron 35.0%
TTGTTAAATAGCAGCTACAG+CGG + chr6_1:102688510-102688529 None:intergenic 35.0%
CAATTTCATCACTCACTATC+AGG + chr6_1:102688534-102688553 None:intergenic 35.0%
GATAGTGAGTGATGAAATTG+TGG - chr6_1:102688534-102688553 Msa0902810:intron 35.0%
AAACCTAGCAAGCTAAACAT+TGG + chr6_1:102688562-102688581 None:intergenic 35.0%
ATAGTATTTGGTCGATGTCA+TGG - chr6_1:102688816-102688835 Msa0902810:intron 35.0%
TAGTATTTGGTCGATGTCAT+GGG - chr6_1:102688817-102688836 Msa0902810:intron 35.0%
! AATGTGAGTGGAGATTTGTT+TGG - chr6_1:102688970-102688989 Msa0902810:intron 35.0%
! ATGTGAGTGGAGATTTGTTT+GGG - chr6_1:102688971-102688990 Msa0902810:intron 35.0%
TCAACTCAAGTACTATCGAA+AGG - chr6_1:102689017-102689036 Msa0902810:intron 35.0%
CAACTCAAGTACTATCGAAA+GGG - chr6_1:102689018-102689037 Msa0902810:intron 35.0%
!! GCTTGTTTTCCAATCATATC+TGG - chr6_1:102689319-102689338 Msa0902810:CDS 35.0%
AAGCATATAATGTGGTTGAG+GGG + chr6_1:102689346-102689365 None:intergenic 35.0%
CAAGCATATAATGTGGTTGA+GGG + chr6_1:102689347-102689366 None:intergenic 35.0%
TCAAGCATATAATGTGGTTG+AGG + chr6_1:102689348-102689367 None:intergenic 35.0%
ACATCATTTCTGCCTATAGA+AGG - chr6_1:102689382-102689401 Msa0902810:CDS 35.0%
AATCCCTTCCTTAAACACTT+CGG + chr6_1:102689512-102689531 None:intergenic 35.0%
ATAATTAAAGAATCCCGTCG+AGG - chr6_1:102689532-102689551 Msa0902810:intron 35.0%
AGGTTTCTTGCTCAAAGATA+AGG - chr6_1:102689552-102689571 Msa0902810:intron 35.0%
TGCTCAAAGATAAGGTTGTA+AGG - chr6_1:102689560-102689579 Msa0902810:intron 35.0%
CGGGAATAAAAAATCTTCAG+TGG - chr6_1:102689612-102689631 Msa0902810:intron 35.0%
GAAATGCTTCTGTTGTTCTA+TGG - chr6_1:102689767-102689786 Msa0902810:CDS 35.0%
TCTGTTGTTCTATGGTATGT+TGG - chr6_1:102689775-102689794 Msa0902810:CDS 35.0%
TCATAGACTATACTCACTTG+GGG + chr6_1:102689801-102689820 None:intergenic 35.0%
AACTCTACGCATCAAAATCA+TGG + chr6_1:102689972-102689991 None:intergenic 35.0%
GGATTTATGCAAGGTGCATA+AGG - chr6_1:102687308-102687327 Msa0902810:three_prime_UTR 40.0%
!! TTGGTTGGTAATTACTGGAG+CGG + chr6_1:102687339-102687358 None:intergenic 40.0%
! TGTGGAAGTTGTTTGTTGGT+TGG + chr6_1:102687354-102687373 None:intergenic 40.0%
TTCTGTATTAACGAACGGGA+CGG + chr6_1:102687386-102687405 None:intergenic 40.0%
GGAAAATGAACGAAATTGGG+CGG + chr6_1:102687501-102687520 None:intergenic 40.0%
! ATAGTGTTGGAGGCGTAAAA+GGG + chr6_1:102687531-102687550 None:intergenic 40.0%
TGCAAAAACAAGACAGAGAG+AGG + chr6_1:102687776-102687795 None:intergenic 40.0%
CTTTCTATCGCCGTTAAGAA+AGG + chr6_1:102687890-102687909 None:intergenic 40.0%
ACAACAGATTGAAGCGGAAA+CGG - chr6_1:102688152-102688171 Msa0902810:intron 40.0%
! TGGCAAGCCTTTTAATCCTT+TGG - chr6_1:102688269-102688288 Msa0902810:intron 40.0%
! ATGTTGTCAATCACGGATTG+CGG - chr6_1:102688371-102688390 Msa0902810:intron 40.0%
!! GAACCAATGTTTAGCTTGCT+AGG - chr6_1:102688556-102688575 Msa0902810:intron 40.0%
!!! TAGCTTGCTAGGTTTGCTTT+TGG - chr6_1:102688567-102688586 Msa0902810:intron 40.0%
AGTATTTGGTCGATGTCATG+GGG - chr6_1:102688818-102688837 Msa0902810:intron 40.0%
! TTTTATACGGGCAATGTGAG+TGG - chr6_1:102688958-102688977 Msa0902810:intron 40.0%
ACAATTTAGCGCAGAGAATG+TGG + chr6_1:102689181-102689200 None:intergenic 40.0%
!! GTCTTTTGATTGCACTGTCA+CGG - chr6_1:102689199-102689218 Msa0902810:CDS 40.0%
!! TCTTTTGATTGCACTGTCAC+GGG - chr6_1:102689200-102689219 Msa0902810:CDS 40.0%
TGATTGGAAAACAAGCAGCA+TGG + chr6_1:102689315-102689334 None:intergenic 40.0%
! AGTCCGAAGTGTTTAAGGAA+GGG - chr6_1:102689506-102689525 Msa0902810:CDS 40.0%
!!! TTTTTTATTCCCGGGACCTA+AGG + chr6_1:102689605-102689624 None:intergenic 40.0%
TCAATTCTAGCAGCTGTTGA+TGG + chr6_1:102689661-102689680 None:intergenic 40.0%
TAACAAGATACCAGGTAAGC+AGG + chr6_1:102689736-102689755 None:intergenic 40.0%
! TGAACGAAATTGGGCGGTTT+TGG + chr6_1:102687495-102687514 None:intergenic 45.0%
! TAGTGTTGGAGGCGTAAAAG+GGG + chr6_1:102687530-102687549 None:intergenic 45.0%
! GATAGTGTTGGAGGCGTAAA+AGG + chr6_1:102687532-102687551 None:intergenic 45.0%
TTACGCCTCCAACACTATCT+TGG - chr6_1:102687533-102687552 Msa0902810:three_prime_UTR 45.0%
TACGCCTCCAACACTATCTT+GGG - chr6_1:102687534-102687553 Msa0902810:three_prime_UTR 45.0%
! AAACCCCAAGATAGTGTTGG+AGG + chr6_1:102687541-102687560 None:intergenic 45.0%
TGGAAACCCCAAGATAGTGT+TGG + chr6_1:102687544-102687563 None:intergenic 45.0%
GAGGAGATTGGATTGAGAGT+TGG + chr6_1:102687564-102687583 None:intergenic 45.0%
! GGAATCTTTGGAAGCGAAGA+GGG + chr6_1:102687586-102687605 None:intergenic 45.0%
! AGGAATCTTTGGAAGCGAAG+AGG + chr6_1:102687587-102687606 None:intergenic 45.0%
! GAGAGAGCGTACACTTGAAA+AGG + chr6_1:102687607-102687626 None:intergenic 45.0%
GCAATATCTCCGTTTGCAAG+CGG - chr6_1:102688014-102688033 Msa0902810:intron 45.0%
! GAGGAGTCATCATGTTTCTG+TGG - chr6_1:102688236-102688255 Msa0902810:intron 45.0%
GTTTCTGTGGTAGCTACAGT+TGG - chr6_1:102688249-102688268 Msa0902810:intron 45.0%
! ATGTTATGTCTAAGGCCTCG+TGG - chr6_1:102689052-102689071 Msa0902810:intron 45.0%
! TGTTATGTCTAAGGCCTCGT+GGG - chr6_1:102689053-102689072 Msa0902810:intron 45.0%
! GAGAATGTGGCAGGAGTATA+GGG + chr6_1:102689168-102689187 None:intergenic 45.0%
! AGAGAATGTGGCAGGAGTAT+AGG + chr6_1:102689169-102689188 None:intergenic 45.0%
TTGCAGATACATGAAGCCGT+TGG - chr6_1:102689475-102689494 Msa0902810:CDS 45.0%
! TGAGGAGTCCGAAGTGTTTA+AGG - chr6_1:102689501-102689520 Msa0902810:CDS 45.0%
! GAGTCCGAAGTGTTTAAGGA+AGG - chr6_1:102689505-102689524 Msa0902810:CDS 45.0%
TTTGAGCAAGAAACCTCGAC+GGG + chr6_1:102689548-102689567 None:intergenic 45.0%
CTTTGAGCAAGAAACCTCGA+CGG + chr6_1:102689549-102689568 None:intergenic 45.0%
AAGGAAACCTTCACAAGTGC+TGG + chr6_1:102689586-102689605 None:intergenic 45.0%
GCACTTGTGAAGGTTTCCTT+AGG - chr6_1:102689586-102689605 Msa0902810:intron 45.0%
GTATTAACGAACGGGACGGA+GGG + chr6_1:102687382-102687401 None:intergenic 50.0%
TGTATTAACGAACGGGACGG+AGG + chr6_1:102687383-102687402 None:intergenic 50.0%
ACGCCTCCAACACTATCTTG+GGG - chr6_1:102687535-102687554 Msa0902810:three_prime_UTR 50.0%
! ATCTTTGGAAGCGAAGAGGG+AGG + chr6_1:102687583-102687602 None:intergenic 50.0%
GCTATAGCCCTATTGTGCAG+CGG + chr6_1:102688415-102688434 None:intergenic 50.0%
TTTAGCGCAGAGAATGTGGC+AGG + chr6_1:102689177-102689196 None:intergenic 50.0%
TTGAGGGGCCCAGATATGAT+TGG + chr6_1:102689331-102689350 None:intergenic 50.0%
TGTAAGGCCAGCACTTGTGA+AGG - chr6_1:102689576-102689595 Msa0902810:intron 50.0%
GTGAAGGTTTCCTTAGGTCC+CGG - chr6_1:102689592-102689611 Msa0902810:intron 50.0%
TGAAGGTTTCCTTAGGTCCC+GGG - chr6_1:102689593-102689612 Msa0902810:intron 50.0%
CAAGATACCAGGTAAGCAGG+TGG + chr6_1:102689733-102689752 None:intergenic 50.0%
GAAGCGAAGAGGGAGGAGAT+TGG + chr6_1:102687576-102687595 None:intergenic 55.0%
ACATGAAGCCGTTGGACGTG+AGG - chr6_1:102689483-102689502 Msa0902810:CDS 55.0%
TTCGGACTCCTCACGTCCAA+CGG + chr6_1:102689494-102689513 None:intergenic 55.0%
AGTGGCATCTACCCAGTCCT+TGG - chr6_1:102689630-102689649 Msa0902810:intron 55.0%
TGATGGCTGCTCCAAGGACT+GGG + chr6_1:102689644-102689663 None:intergenic 55.0%
! TTGATGGCTGCTCCAAGGAC+TGG + chr6_1:102689645-102689664 None:intergenic 55.0%
!! AGCTGTTGATGGCTGCTCCA+AGG + chr6_1:102689650-102689669 None:intergenic 55.0%
CCAGGTAAGCAGGTGGAACT+AGG + chr6_1:102689726-102689745 None:intergenic 55.0%
CCTAGTTCCACCTGCTTACC+TGG - chr6_1:102689723-102689742 Msa0902810:intron 55.0%
! ACGGGACGGAGGGTATGTTG+TGG + chr6_1:102687372-102687391 None:intergenic 60.0%
GAGGCGTAAAAGGGGCGAGA+TGG + chr6_1:102687522-102687541 None:intergenic 60.0%
! GTCTAAGGCCTCGTGGGACT+TGG - chr6_1:102689059-102689078 Msa0902810:CDS 60.0%
GTTTGCAGCCAAGTCCCACG+AGG + chr6_1:102689070-102689089 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 102687295 102690051 102687295 ID=Msa0902810;Name=Msa0902810
chr6_1 mRNA 102687295 102690051 102687295 ID=Msa0902810-mRNA-1;Parent=Msa0902810;Name=Msa0902810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|3|361|300
chr6_1 exon 102687295 102687865 102687295 ID=Msa0902810-mRNA-1:exon:18060;Parent=Msa0902810-mRNA-1
chr6_1 exon 102689056 102689547 102689056 ID=Msa0902810-mRNA-1:exon:18059;Parent=Msa0902810-mRNA-1
chr6_1 exon 102689732 102690051 102689732 ID=Msa0902810-mRNA-1:exon:18058;Parent=Msa0902810-mRNA-1
chr6_1 five_prime_UTR 102689933 102690051 102689933 ID=Msa0902810-mRNA-1:five_prime_utr;Parent=Msa0902810-mRNA-1
chr6_1 CDS 102689732 102689932 102689732 ID=Msa0902810-mRNA-1:cds;Parent=Msa0902810-mRNA-1
chr6_1 CDS 102689056 102689547 102689056 ID=Msa0902810-mRNA-1:cds;Parent=Msa0902810-mRNA-1
chr6_1 CDS 102687656 102687865 102687656 ID=Msa0902810-mRNA-1:cds;Parent=Msa0902810-mRNA-1
chr6_1 three_prime_UTR 102687295 102687655 102687295 ID=Msa0902810-mRNA-1:three_prime_utr;Parent=Msa0902810-mRNA-1
Gene Sequence

>Msa0902810

ATGGCTACTTCTCTCTCGAATCAATCTCTATTGGCTTGTTCTTTTTCATCATCTTCTTCTTCATTCTCTTCAAAATCTCCAAAACCGCCCAATTTCGTTCATTTTCCATCTCGCCCCTTTTACGCCTCCAACACTATCTTGGGGTTTCCAACTCTCAATCCAATCTCCTCCCTCTTCGCTTCCAAAGATTCCTTTTCAAGTACAAATGATAAAACAGACGAGACTCGGAATGATGAAGATAAACAAGATTTACCAAGCTTATTGGTCCTTATTAAAGCATACAAGAAAGCCTTTCTTAACGGCGATAGAAAGACCGCATTGTTGATTGAAGAAATAATACAATCAAAAGCAATTGAAAGGAATAAATTGATTCAGAAAGTATCTAGTTTATCGGCGGATAAAGTTTCTTGTAAAGAGCAATATCTCCGTTTGCAAGCGGATTTTGATAACTTTAGGAAAAGATGTGAGAAGGAAAGAATTAGCATTCAATCGGATGCTCAGCAAGAATTCATTAAAAAACTTCTGTTGATGGTGGACAGTTTTGAGAGAGTTAAACAACAGATTGAAGCGGAAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTCTTTACAAGCAATTTGTAGAGACTTTGAGGAGTCATCATGTTTCTGTGGTAGCTACAGTTGGCAAGCCTTTTAATCCTTTGATACATGAAGCCGTTGGACGTGAGGAGTCCGAAGTGTTTAAGGAAGGGATTATAATTAAAGAATCCCGTCGAGGTTTCTTGCTCAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAAAAATCTTCAGTGGCATCTACCCAGTCCTTGGAGCAGCCATCAACAGCTGCTAGAATTGATGAAAGATAA

Protein sequence

>Msa0902810

MATSLSNQSLLACSFSSSSSSFSSKSPKPPNFVHFPSRPFYASNTILGFPTLNPISSLFASKDSFSSTNDKTDETRNDEDKQDLPSLLVLIKAYKKAFLNGDRKTALLIEEIIQSKAIERNKLIQKVSSLSADKVSCKEQYLRLQADFDNFRKRCEKERISIQSDAQQEFIKKLLLMVDSFERVKQQIEAETEKEKKIDASYQSLYKQFVETLRSHHVSVVATVGKPFNPLIHEAVGREESEVFKEGIIIKESRRGFLLKDKVVRPALVKVSLGPGNKKSSVASTQSLEQPSTAARIDER*