Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585730 | XP_003604258.1 | 94.947 | 376 | 19 | 0 | 1 | 376 | 1 | 376 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585730 | sp|P49243|FABH_ARATH | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0585730 | 0.816441 | 5.522421e-52 | -8.615850e-47 |
| Msa0018220 | Msa0585730 | 0.805755 | 1.145095e-49 | -8.615850e-47 |
| Msa0036430 | Msa0585730 | 0.833999 | 3.861687e-56 | -8.615850e-47 |
| Msa0043210 | Msa0585730 | 0.807987 | 3.864102e-50 | -8.615850e-47 |
| Msa0048200 | Msa0585730 | 0.811387 | 7.182780e-51 | -8.615850e-47 |
| Msa0050040 | Msa0585730 | 0.818132 | 2.299448e-52 | -8.615850e-47 |
| Msa0052460 | Msa0585730 | 0.803547 | 3.309663e-49 | -8.615850e-47 |
| Msa0053110 | Msa0585730 | 0.821456 | 3.999948e-53 | -8.615850e-47 |
| Msa0084500 | Msa0585730 | 0.818316 | 2.088678e-52 | -8.615850e-47 |
| Msa0094420 | Msa0585730 | 0.800039 | 1.737760e-48 | -8.615850e-47 |
| Msa0097050 | Msa0585730 | 0.804656 | 1.945578e-49 | -8.615850e-47 |
| Msa0098440 | Msa0585730 | 0.815755 | 7.857569e-52 | -8.615850e-47 |
| Msa0102990 | Msa0585730 | 0.818358 | 2.043484e-52 | -8.615850e-47 |
| Msa0105340 | Msa0585730 | 0.804413 | 2.186726e-49 | -8.615850e-47 |
| Msa0105420 | Msa0585730 | 0.804502 | 2.094401e-49 | -8.615850e-47 |
| Msa0118400 | Msa0585730 | 0.800374 | 1.485102e-48 | -8.615850e-47 |
| Msa0120330 | Msa0585730 | 0.801421 | 9.076841e-49 | -8.615850e-47 |
| Msa0130010 | Msa0585730 | 0.815788 | 7.724042e-52 | -8.615850e-47 |
| Msa0130570 | Msa0585730 | 0.803574 | 3.266163e-49 | -8.615850e-47 |
| Msa0134130 | Msa0585730 | 0.821774 | 3.375754e-53 | -8.615850e-47 |
| Msa0139900 | Msa0585730 | 0.801320 | 9.519473e-49 | -8.615850e-47 |
| Msa0161100 | Msa0585730 | 0.811617 | 6.400353e-51 | -8.615850e-47 |
| Msa0161200 | Msa0585730 | 0.801753 | 7.759150e-49 | -8.615850e-47 |
| Msa0184990 | Msa0585730 | 0.812387 | 4.350274e-51 | -8.615850e-47 |
| Msa0200970 | Msa0585730 | 0.804232 | 2.384880e-49 | -8.615850e-47 |
| Msa0203160 | Msa0585730 | 0.823236 | 1.544232e-53 | -8.615850e-47 |
| Msa0207180 | Msa0585730 | 0.819886 | 9.176897e-53 | -8.615850e-47 |
| Msa0219190 | Msa0585730 | 0.851135 | 1.080957e-60 | -8.615850e-47 |
| Msa0235890 | Msa0585730 | 0.804373 | 2.228556e-49 | -8.615850e-47 |
| Msa0370600 | Msa0585730 | 0.810678 | 1.022899e-50 | -8.615850e-47 |
| Msa0371540 | Msa0585730 | 0.809265 | 2.061184e-50 | -8.615850e-47 |
| Msa0378340 | Msa0585730 | 0.845424 | 4.096644e-59 | -8.615850e-47 |
| Msa0413930 | Msa0585730 | 0.817132 | 3.863521e-52 | -8.615850e-47 |
| Msa0418200 | Msa0585730 | 0.824423 | 8.135275e-54 | -8.615850e-47 |
| Msa0427690 | Msa0585730 | 0.846006 | 2.847281e-59 | -8.615850e-47 |
| Msa0430820 | Msa0585730 | 0.824644 | 7.220225e-54 | -8.615850e-47 |
| Msa0436500 | Msa0585730 | 0.841573 | 4.379229e-58 | -8.615850e-47 |
| Msa0444010 | Msa0585730 | 0.811523 | 6.709980e-51 | -8.615850e-47 |
| Msa0464540 | Msa0585730 | 0.820415 | 6.941449e-53 | -8.615850e-47 |
| Msa0466060 | Msa0585730 | 0.805877 | 1.079912e-49 | -8.615850e-47 |
| Msa0238890 | Msa0585730 | 0.810424 | 1.160830e-50 | -8.615850e-47 |
| Msa0259720 | Msa0585730 | 0.802291 | 6.014355e-49 | -8.615850e-47 |
| Msa0260970 | Msa0585730 | 0.820940 | 5.258430e-53 | -8.615850e-47 |
| Msa0290950 | Msa0585730 | 0.801773 | 7.686121e-49 | -8.615850e-47 |
| Msa0298240 | Msa0585730 | 0.854862 | 9.278719e-62 | -8.615850e-47 |
| Msa0308830 | Msa0585730 | 0.819315 | 1.238558e-52 | -8.615850e-47 |
| Msa0315480 | Msa0585730 | 0.823002 | 1.750612e-53 | -8.615850e-47 |
| Msa0331780 | Msa0585730 | 0.809134 | 2.199136e-50 | -8.615850e-47 |
| Msa0336090 | Msa0585730 | 0.806464 | 8.123494e-50 | -8.615850e-47 |
| Msa0361260 | Msa0585730 | 0.805738 | 1.154695e-49 | -8.615850e-47 |
| Msa0517340 | Msa0585730 | 0.808036 | 3.773035e-50 | -8.615850e-47 |
| Msa0518520 | Msa0585730 | 0.844233 | 8.584410e-59 | -8.615850e-47 |
| Msa0525240 | Msa0585730 | 0.804827 | 1.791654e-49 | -8.615850e-47 |
| Msa0537920 | Msa0585730 | 0.814718 | 1.335973e-51 | -8.615850e-47 |
| Msa0538060 | Msa0585730 | 0.954487 | 2.649906e-112 | -8.615850e-47 |
| Msa0538220 | Msa0585730 | 0.813004 | 3.187394e-51 | -8.615850e-47 |
| Msa0538570 | Msa0585730 | 0.817931 | 2.552102e-52 | -8.615850e-47 |
| Msa0543850 | Msa0585730 | 0.861989 | 6.959315e-64 | -8.615850e-47 |
| Msa0547050 | Msa0585730 | 0.805641 | 1.210198e-49 | -8.615850e-47 |
| Msa0575250 | Msa0585730 | 0.814316 | 1.639329e-51 | -8.615850e-47 |
| Msa0581340 | Msa0585730 | 0.802429 | 5.635035e-49 | -8.615850e-47 |
| Msa0585730 | Msa0594390 | 0.825739 | 3.977893e-54 | -8.615850e-47 |
| Msa0585730 | Msa0619980 | 0.808646 | 2.795385e-50 | -8.615850e-47 |
| Msa0585730 | Msa0620260 | 0.800656 | 1.301249e-48 | -8.615850e-47 |
| Msa0585730 | Msa0621770 | 0.811336 | 7.368366e-51 | -8.615850e-47 |
| Msa0585730 | Msa0625890 | 0.907028 | 7.882475e-81 | -8.615850e-47 |
| Msa0585730 | Msa0634270 | 0.827520 | 1.495538e-54 | -8.615850e-47 |
| Msa0585730 | Msa0641620 | 0.801992 | 6.930910e-49 | -8.615850e-47 |
| Msa0585730 | Msa0642910 | 0.821174 | 4.645997e-53 | -8.615850e-47 |
| Msa0585730 | Msa0645050 | 0.827100 | 1.885515e-54 | -8.615850e-47 |
| Msa0585730 | Msa0652980 | 0.808764 | 2.638183e-50 | -8.615850e-47 |
| Msa0585730 | Msa0663590 | 0.935232 | 1.172078e-96 | -8.615850e-47 |
| Msa0585730 | Msa0663680 | 0.917000 | 9.037757e-86 | -8.615850e-47 |
| Msa0585730 | Msa0665910 | -0.802893 | 4.519121e-49 | -8.615850e-47 |
| Msa0585730 | Msa0678890 | 0.859325 | 4.471195e-63 | -8.615850e-47 |
| Msa0585730 | Msa0680150 | 0.815400 | 9.428498e-52 | -8.615850e-47 |
| Msa0585730 | Msa0684530 | 0.804729 | 1.878295e-49 | -8.615850e-47 |
| Msa0585730 | Msa0685330 | 0.807838 | 4.157399e-50 | -8.615850e-47 |
| Msa0585730 | Msa0688500 | 0.808568 | 2.905793e-50 | -8.615850e-47 |
| Msa0585730 | Msa0691160 | 0.840307 | 9.408830e-58 | -8.615850e-47 |
| Msa0585730 | Msa0707220 | 0.814751 | 1.313576e-51 | -8.615850e-47 |
| Msa0585730 | Msa0720040 | 0.834318 | 3.212879e-56 | -8.615850e-47 |
| Msa0585730 | Msa0722940 | 0.819564 | 1.086917e-52 | -8.615850e-47 |
| Msa0585730 | Msa0723150 | 0.810837 | 9.452142e-51 | -8.615850e-47 |
| Msa0585730 | Msa0737190 | 0.802250 | 6.132986e-49 | -8.615850e-47 |
| Msa0585730 | Msa0740420 | 0.803157 | 3.985342e-49 | -8.615850e-47 |
| Msa0585730 | Msa0741900 | 0.806079 | 9.790828e-50 | -8.615850e-47 |
| Msa0585730 | Msa0747780 | 0.821093 | 4.850260e-53 | -8.615850e-47 |
| Msa0585730 | Msa0754030 | 0.820767 | 5.763735e-53 | -8.615850e-47 |
| Msa0585730 | Msa0761580 | 0.809528 | 1.810177e-50 | -8.615850e-47 |
| Msa0585730 | Msa0778930 | 0.800748 | 1.246224e-48 | -8.615850e-47 |
| Msa0585730 | Msa0807110 | 0.815827 | 7.571020e-52 | -8.615850e-47 |
| Msa0585730 | Msa0810020 | 0.809938 | 1.477015e-50 | -8.615850e-47 |
| Msa0585730 | Msa0816450 | 0.823033 | 1.722003e-53 | -8.615850e-47 |
| Msa0585730 | Msa0820670 | 0.824297 | 8.710168e-54 | -8.615850e-47 |
| Msa0585730 | Msa0822990 | 0.811981 | 5.334069e-51 | -8.615850e-47 |
| Msa0585730 | Msa0833040 | 0.814106 | 1.824299e-51 | -8.615850e-47 |
| Msa0585730 | Msa0843290 | 0.816385 | 5.683460e-52 | -8.615850e-47 |
| Msa0585730 | Msa0850500 | 0.813245 | 2.821906e-51 | -8.615850e-47 |
| Msa0585730 | Msa0862100 | 0.847010 | 1.515700e-59 | -8.615850e-47 |
| Msa0585730 | Msa0867350 | 0.805487 | 1.303948e-49 | -8.615850e-47 |
| Msa0585730 | Msa0872310 | 0.845806 | 3.227709e-59 | -8.615850e-47 |
| Msa0585730 | Msa0873190 | 0.838434 | 2.882249e-57 | -8.615850e-47 |
| Msa0585730 | Msa0885060 | 0.828446 | 8.952062e-55 | -8.615850e-47 |
| Msa0585730 | Msa0886980 | 0.813150 | 2.961545e-51 | -8.615850e-47 |
| Msa0585730 | Msa0905550 | 0.844476 | 7.381996e-59 | -8.615850e-47 |
| Msa0585730 | Msa0931480 | 0.816647 | 4.964910e-52 | -8.615850e-47 |
| Msa0585730 | Msa0937550 | 0.844982 | 5.393595e-59 | -8.615850e-47 |
| Msa0585730 | Msa0938430 | 0.825568 | 4.367361e-54 | -8.615850e-47 |
| Msa0585730 | Msa0951460 | 0.816768 | 4.663054e-52 | -8.615850e-47 |
| Msa0585730 | Msa0951710 | 0.832993 | 6.884975e-56 | -8.615850e-47 |
| Msa0585730 | Msa0951960 | 0.820876 | 5.441611e-53 | -8.615850e-47 |
| Msa0585730 | Msa0974750 | 0.822625 | 2.143606e-53 | -8.615850e-47 |
| Msa0585730 | Msa0975580 | 0.801932 | 7.131089e-49 | -8.615850e-47 |
| Msa0585730 | Msa0988480 | 0.808754 | 2.650915e-50 | -8.615850e-47 |
| Msa0585730 | Msa1004500 | 0.811990 | 5.309896e-51 | -8.615850e-47 |
| Msa0585730 | Msa1006860 | 0.817915 | 2.574080e-52 | -8.615850e-47 |
| Msa0585730 | Msa1007350 | 0.827045 | 1.943241e-54 | -8.615850e-47 |
| Msa0585730 | Msa1009000 | 0.828392 | 9.223471e-55 | -8.615850e-47 |
| Msa0585730 | Msa1014270 | 0.842453 | 2.561510e-58 | -8.615850e-47 |
| Msa0585730 | Msa1022650 | 0.802098 | 6.591290e-49 | -8.615850e-47 |
| Msa0585730 | Msa1032450 | 0.821761 | 3.400133e-53 | -8.615850e-47 |
| Msa0585730 | Msa1033560 | 0.807637 | 4.586964e-50 | -8.615850e-47 |
| Msa0585730 | Msa1037910 | 0.802276 | 6.059208e-49 | -8.615850e-47 |
| Msa0585730 | Msa1037920 | 0.801976 | 6.982076e-49 | -8.615850e-47 |
| Msa0585730 | Msa1041530 | 0.842194 | 3.001672e-58 | -8.615850e-47 |
| Msa0585730 | Msa1042670 | 0.827165 | 1.818956e-54 | -8.615850e-47 |
| Msa0585730 | Msa1045880 | 0.801295 | 9.630890e-49 | -8.615850e-47 |
| Msa0585730 | Msa1045970 | 0.804591 | 2.007181e-49 | -8.615850e-47 |
| Msa0585730 | Msa1046870 | 0.804846 | 1.775438e-49 | -8.615850e-47 |
| Msa0585730 | Msa1048710 | 0.824033 | 1.004965e-53 | -8.615850e-47 |
| Msa0585730 | Msa1055260 | 0.834828 | 2.391058e-56 | -8.615850e-47 |
| Msa0585730 | Msa1055280 | 0.833366 | 5.557761e-56 | -8.615850e-47 |
| Msa0585730 | Msa1055500 | 0.800452 | 1.432105e-48 | -8.615850e-47 |
| Msa0585730 | Msa1061500 | 0.825882 | 3.678644e-54 | -8.615850e-47 |
| Msa0585730 | Msa1078710 | 0.800174 | 1.631091e-48 | -8.615850e-47 |
| Msa0585730 | Msa1081570 | 0.849082 | 4.061782e-60 | -8.615850e-47 |
| Msa0585730 | Msa1098560 | 0.824624 | 7.297432e-54 | -8.615850e-47 |
| Msa0585730 | Msa1106810 | 0.829132 | 6.106849e-55 | -8.615850e-47 |
| Msa0585730 | Msa1116930 | 0.810715 | 1.004131e-50 | -8.615850e-47 |
| Msa0585730 | Msa1123880 | 0.819393 | 1.189258e-52 | -8.615850e-47 |
| Msa0585730 | Msa1127140 | 0.853715 | 1.988961e-61 | -8.615850e-47 |
| Msa0585730 | Msa1129960 | 0.809326 | 1.999835e-50 | -8.615850e-47 |
| Msa0585730 | Msa1129970 | 0.805907 | 1.064089e-49 | -8.615850e-47 |
| Msa0585730 | Msa1133710 | 0.803427 | 3.504598e-49 | -8.615850e-47 |
| Msa0585730 | Msa1135870 | 0.806361 | 8.537396e-50 | -8.615850e-47 |
| Msa0585730 | Msa1145020 | 0.818141 | 2.288472e-52 | -8.615850e-47 |
| Msa0585730 | Msa1150970 | 0.803131 | 4.034484e-49 | -8.615850e-47 |
| Msa0585730 | Msa1166400 | 0.844792 | 6.070808e-59 | -8.615850e-47 |
| Msa0585730 | Msa1169990 | 0.848594 | 5.550556e-60 | -8.615850e-47 |
| Msa0585730 | Msa1176160 | 0.802585 | 5.232528e-49 | -8.615850e-47 |
| Msa0585730 | Msa1201990 | 0.805858 | 1.089572e-49 | -8.615850e-47 |
| Msa0585730 | Msa1220450 | -0.802327 | 5.912173e-49 | -8.615850e-47 |
| Msa0585730 | Msa1221260 | 0.803065 | 4.163514e-49 | -8.615850e-47 |
| Msa0585730 | Msa1221560 | 0.815533 | 8.804899e-52 | -8.615850e-47 |
| Msa0585730 | Msa1228610 | 0.903975 | 1.989173e-79 | -8.615850e-47 |
| Msa0585730 | Msa1254770 | 0.807068 | 6.055951e-50 | -8.615850e-47 |
| Msa0585730 | Msa1254800 | 0.808894 | 2.475203e-50 | -8.615850e-47 |
| Msa0585730 | Msa1258810 | 0.803098 | 4.099621e-49 | -8.615850e-47 |
| Msa0585730 | Msa1272330 | 0.811961 | 5.388294e-51 | -8.615850e-47 |
| Msa0585730 | Msa1302150 | 0.802534 | 5.360561e-49 | -8.615850e-47 |
| Msa0585730 | Msa1307190 | 0.800471 | 1.419014e-48 | -8.615850e-47 |
| Msa0585730 | Msa1321000 | 0.805765 | 1.139661e-49 | -8.615850e-47 |
| Msa0585730 | Msa1323060 | 0.814093 | 1.836436e-51 | -8.615850e-47 |
| Msa0585730 | Msa1337340 | 0.800639 | 1.311274e-48 | -8.615850e-47 |
| Msa0585730 | Msa1350670 | 0.813365 | 2.656106e-51 | -8.615850e-47 |
| Msa0585730 | Msa1355400 | 0.816726 | 4.767702e-52 | -8.615850e-47 |
| Msa0585730 | Msa1365020 | 0.812438 | 4.239739e-51 | -8.615850e-47 |
| Msa0585730 | Msa1382720 | 0.838830 | 2.277403e-57 | -8.615850e-47 |
| Msa0585730 | Msa1408870 | 0.816097 | 6.590988e-52 | -8.615850e-47 |
| Msa0585730 | Msa1414930 | 0.807280 | 5.459348e-50 | -8.615850e-47 |
| Msa0585730 | Msa1420060 | 0.869715 | 2.515390e-66 | -8.615850e-47 |
| Msa0585730 | Msa1421550 | 0.810524 | 1.104420e-50 | -8.615850e-47 |
| Msa0585730 | Msa1445790 | 0.815733 | 7.948280e-52 | -8.615850e-47 |
| Msa0585730 | Msa1464560 | 0.801372 | 9.289262e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585730 | MtrunA17_Chr4g0001461 | 82.653 | 392 | 18 | 1 | 35 | 376 | 1 | 392 | 0.0 | 637 |
| Msa0585730 | MtrunA17_Chr2g0333881 | 72.832 | 346 | 94 | 0 | 31 | 376 | 51 | 396 | 0.0 | 528 |
| Msa0585730 | MtrunA17_Chr5g0396921 | 66.019 | 206 | 51 | 1 | 171 | 376 | 23 | 209 | 6.20e-91 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585730 | AT1G62640.2 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
| Msa0585730 | AT1G62640.1 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
Find 82 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAAACGTCGAGTTCTTTC+AGG | 0.225004 | 4_2:+6807054 | Msa0585730:CDS |
| CATGAATATGAATACTTCTT+TGG | 0.249673 | 4_2:-6809027 | None:intergenic |
| CCACTACATCAATAATTCTT+TGG | 0.266849 | 4_2:-6809338 | None:intergenic |
| ATTATTGCTGCTTCTGGCTT+TGG | 0.274041 | 4_2:+6809489 | Msa0585730:CDS |
| TAATGCATCAGACTCAATTA+AGG | 0.282247 | 4_2:+6808987 | Msa0585730:CDS |
| AGTTAGAAGTGGAAAGATTA+AGG | 0.293816 | 4_2:+6809458 | Msa0585730:CDS |
| GGACAAATTATTGCTGCTTC+TGG | 0.294045 | 4_2:+6809483 | Msa0585730:CDS |
| GCTTTGGTGCTGGTCTTACT+TGG | 0.297418 | 4_2:+6809505 | Msa0585730:CDS |
| TTTCAAAATGTTCTTGTAAT+CGG | 0.300523 | 4_2:+6808365 | Msa0585730:CDS |
| GCATGTAGTGGATTTATCTT+TGG | 0.313034 | 4_2:+6808222 | Msa0585730:CDS |
| TATCAGCTGCTAGTCACATT+AGG | 0.325626 | 4_2:+6808250 | Msa0585730:CDS |
| TGTTGGACTAATTAACAAAA+AGG | 0.327242 | 4_2:-6805795 | None:intergenic |
| ATCAGCTGCTAGTCACATTA+GGG | 0.332459 | 4_2:+6808251 | Msa0585730:CDS |
| ATATCAAATGTGGCTGATTA+TGG | 0.349357 | 4_2:+6809393 | Msa0585730:CDS |
| AGAAGTTCATGTATTCTGTT+TGG | 0.357805 | 4_2:+6808425 | Msa0585730:CDS |
| AGGAAATGGAAGGTGATAAG+AGG | 0.375453 | 4_2:-6805864 | None:intergenic |
| GCTGCTTCTGGCTTTGGTGC+TGG | 0.385323 | 4_2:+6809495 | Msa0585730:CDS |
| GGAAGATGAAGGAGTGAAGT+TGG | 0.386428 | 4_2:-6805841 | None:intergenic |
| CTTTGGTGCTGGTCTTACTT+GGG | 0.392366 | 4_2:+6809506 | Msa0585730:CDS |
| GCAAAGGAGGTTGGGAATCA+TGG | 0.411841 | 4_2:-6805915 | None:intergenic |
| GGGGATAAGGTCTTACTTTG+AGG | 0.412976 | 4_2:+6809547 | Msa0585730:exon |
| TGATTGGTTACTTCTCCATC+AGG | 0.428078 | 4_2:+6809152 | Msa0585730:CDS |
| TACCTGCATCCAGCATTGAT+TGG | 0.433675 | 4_2:+6809136 | Msa0585730:CDS |
| CTCTTTCGAGATATATCGAT+TGG | 0.434773 | 4_2:+6808396 | Msa0585730:CDS |
| GGGATAAGGTCTTACTTTGA+GGG | 0.460615 | 4_2:+6809548 | Msa0585730:exon |
| ATACCTTGGCAAAGGAGGTT+GGG | 0.472067 | 4_2:-6805923 | None:intergenic |
| GAATATGAATACTTCTTTGG+AGG | 0.473078 | 4_2:-6809024 | None:intergenic |
| TAGTTGATACTTCTGATGAA+TGG | 0.482232 | 4_2:+6807010 | Msa0585730:CDS |
| GTATATCACTTGAAAACATA+AGG | 0.488538 | 4_2:-6809597 | None:intergenic |
| TGCTGCCTCTACTGATAAAG+TGG | 0.490848 | 4_2:-6807804 | None:intergenic |
| AATGCATCAGACTCAATTAA+GGG | 0.492850 | 4_2:+6808988 | Msa0585730:CDS |
| GTGATAAGAGGGGAAGATGA+AGG | 0.493811 | 4_2:-6805852 | None:intergenic |
| GCTGTAATGTTATAAGCTGC+TGG | 0.494699 | 4_2:-6808198 | None:intergenic |
| TAGATGAACACACCAAGATT+AGG | 0.495759 | 4_2:-6807871 | None:intergenic |
| CATAGTTTAGCATAACACTT+TGG | 0.499298 | 4_2:+6805740 | Msa0585730:five_prime_UTR |
| AGTGCTGACTCAATTGACTT+TGG | 0.500820 | 4_2:-6809099 | None:intergenic |
| AGAAGTGGAAAGATTAAGGA+AGG | 0.501824 | 4_2:+6809462 | Msa0585730:CDS |
| CCAAAGAATTATTGATGTAG+TGG | 0.502244 | 4_2:+6809338 | Msa0585730:CDS |
| TTTCAGATTTCAAAACAGCT+TGG | 0.504851 | 4_2:+6808162 | Msa0585730:intron |
| AATTGAGTCAGCACTTCAAA+AGG | 0.505835 | 4_2:+6809107 | Msa0585730:CDS |
| CATACCTTGGCAAAGGAGGT+TGG | 0.506757 | 4_2:-6805924 | None:intergenic |
| AATGCAGCATATAAAGAAGA+AGG | 0.507598 | 4_2:+6808958 | Msa0585730:CDS |
| TTTGGTGCTGGTCTTACTTG+GGG | 0.514017 | 4_2:+6809507 | Msa0585730:CDS |
| GGAAATGGAAGGTGATAAGA+GGG | 0.514373 | 4_2:-6805863 | None:intergenic |
| AACCAATCAATGCTGGATGC+AGG | 0.515256 | 4_2:-6809138 | None:intergenic |
| AGACTCAATTAAGGGTGAGT+TGG | 0.516652 | 4_2:+6808996 | Msa0585730:CDS |
| GAGAAGTAACCAATCAATGC+TGG | 0.517393 | 4_2:-6809145 | None:intergenic |
| TATTCATGCATACATATGAA+TGG | 0.524043 | 4_2:+6809042 | Msa0585730:CDS |
| AAGTGCAGCTTCCATTCCAT+TGG | 0.525636 | 4_2:+6809422 | Msa0585730:CDS |
| GGCTGCAAGCTGGTAGGATG+TGG | 0.526765 | 4_2:+6806940 | Msa0585730:CDS |
| CTTTGCAGACTTGTTAGTCA+AGG | 0.528713 | 4_2:+6806919 | Msa0585730:intron |
| AACTCGACGTTTACGAATCC+CGG | 0.530634 | 4_2:-6807046 | None:intergenic |
| AACATTACAGCTGCATGTAG+TGG | 0.532984 | 4_2:+6808210 | Msa0585730:CDS |
| ATTCTGTTTGGAGATGCTGC+TGG | 0.537982 | 4_2:+6808437 | Msa0585730:CDS |
| GAGATGGCAAAGGTTGATCC+AGG | 0.538042 | 4_2:+6807839 | Msa0585730:CDS |
| TGCTGGTGCTGTTCTAGTAC+AGG | 0.539004 | 4_2:+6808454 | Msa0585730:CDS |
| TCATTAGTAATCTCAAGAGT+TGG | 0.547090 | 4_2:-6806973 | None:intergenic |
| GAGTCAGCACTTCAAAAGGC+TGG | 0.548884 | 4_2:+6809111 | Msa0585730:CDS |
| TTAGATGAATCAGTTAGAAG+TGG | 0.549460 | 4_2:+6809447 | Msa0585730:CDS |
| ACTGATTCATCTAAAGCCAA+TGG | 0.554412 | 4_2:-6809438 | None:intergenic |
| TTCATCTAAAGCCAATGGAA+TGG | 0.563272 | 4_2:-6809433 | None:intergenic |
| CTTGACCACTTTATCAGTAG+AGG | 0.564880 | 4_2:+6807799 | Msa0585730:CDS |
| AATGGATAAGTGTTCGCACC+GGG | 0.577062 | 4_2:+6807028 | Msa0585730:CDS |
| AGGTGATGTTGACCTAATCT+TGG | 0.581165 | 4_2:+6807859 | Msa0585730:CDS |
| GAATGGATAAGTGTTCGCAC+CGG | 0.581811 | 4_2:+6807027 | Msa0585730:CDS |
| AAGACATACCTTGGCAAAGG+AGG | 0.582045 | 4_2:-6805928 | None:intergenic |
| ATGCAGCATATAAAGAAGAA+GGG | 0.586575 | 4_2:+6808959 | Msa0585730:CDS |
| CTTTATCAGTAGAGGCAGCA+AGG | 0.593587 | 4_2:+6807807 | Msa0585730:CDS |
| TGTTAGTCAAGGCTGCAAGC+TGG | 0.594953 | 4_2:+6806930 | Msa0585730:CDS |
| TCTAAGACATACCTTGGCAA+AGG | 0.596664 | 4_2:-6805931 | None:intergenic |
| AGTCAAGGCTGCAAGCTGGT+AGG | 0.597236 | 4_2:+6806934 | Msa0585730:CDS |
| AAGATTAGGTCAACATCACC+TGG | 0.602574 | 4_2:-6807857 | None:intergenic |
| TGCAGCATATAAAGAAGAAG+GGG | 0.606045 | 4_2:+6808960 | Msa0585730:CDS |
| ATTCCCAACCTCCTTTGCCA+AGG | 0.606866 | 4_2:+6805920 | Msa0585730:CDS |
| CAGAATACATGAACTTCTGT+CGG | 0.609245 | 4_2:-6808420 | None:intergenic |
| AGCAAGGAAAGCTCTTGAGA+TGG | 0.614431 | 4_2:+6807823 | Msa0585730:CDS |
| GATTTGAATAGTGATGGTGA+TGG | 0.616422 | 4_2:+6808702 | Msa0585730:CDS |
| TCAGCTGCTAGTCACATTAG+GGG | 0.630404 | 4_2:+6808252 | Msa0585730:CDS |
| GAAAGCTCTTGAGATGGCAA+AGG | 0.633878 | 4_2:+6807829 | Msa0585730:CDS |
| GTTGGTAGATACATTGACCA+TGG | 0.637541 | 4_2:-6805823 | None:intergenic |
| GAAATGGAAGGTGATAAGAG+GGG | 0.692819 | 4_2:-6805862 | None:intergenic |
| ATTGCAGGCGTGCAACTACG+AGG | 0.723991 | 4_2:+6808659 | Msa0585730:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTGATAAAAGATTAAT+AGG | + | chr4_2:6806379-6806398 | Msa0585730:intron | 10.0% |
| !!! | CTTTTTACTTATATAAAAAT+TGG | - | chr4_2:6807980-6807999 | None:intergenic | 10.0% |
| !! | AAAAATTATTTACAACATTT+AGG | - | chr4_2:6808320-6808339 | None:intergenic | 10.0% |
| !!! | TTAATCATAAAAAAAAGTTT+TGG | - | chr4_2:6809214-6809233 | None:intergenic | 10.0% |
| !! | TAATCAAATATATTACTATA+TGG | - | chr4_2:6809254-6809273 | None:intergenic | 10.0% |
| !! | ATATAGTAATATATTTGATT+AGG | + | chr4_2:6809253-6809272 | Msa0585730:intron | 10.0% |
| !! | TATAGTAATATATTTGATTA+GGG | + | chr4_2:6809254-6809273 | Msa0585730:intron | 10.0% |
| !!! | ATTATTTGTTATAAGATGTA+AGG | - | chr4_2:6806138-6806157 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAAATGTAGTT+TGG | - | chr4_2:6807390-6807409 | None:intergenic | 15.0% |
| !!! | TAATAGTTCAATTTAGTTTT+CGG | + | chr4_2:6807532-6807551 | Msa0585730:intron | 15.0% |
| !!! | TATTTTCATTGAGATTTAAA+TGG | + | chr4_2:6808585-6808604 | Msa0585730:intron | 15.0% |
| !!! | AATTTAGGGAAATTTATTTT+TGG | - | chr4_2:6809184-6809203 | None:intergenic | 15.0% |
| !!! | TTCATTTTATATCATACACT+AGG | + | chr4_2:6805983-6806002 | Msa0585730:intron | 20.0% |
| !! | CTATTCATTATAAACAAATG+TGG | + | chr4_2:6806519-6806538 | Msa0585730:intron | 20.0% |
| !! | AAATTAAAATCAAACCATGA+TGG | + | chr4_2:6806792-6806811 | Msa0585730:intron | 20.0% |
| !! | TATACAAATTATAACCATCA+TGG | - | chr4_2:6806809-6806828 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTGAGATATTGT+TGG | + | chr4_2:6807202-6807221 | Msa0585730:intron | 20.0% |
| !!! | ATTCTGTTTTCAATTATTGA+TGG | + | chr4_2:6807232-6807251 | Msa0585730:intron | 20.0% |
| !!! | TTCTGTTTTCAATTATTGAT+GGG | + | chr4_2:6807233-6807252 | Msa0585730:intron | 20.0% |
| !!! | ATCAGTTGATAATATAAGTT+TGG | - | chr4_2:6807447-6807466 | None:intergenic | 20.0% |
| !!! | AATAGTTCAATTTAGTTTTC+GGG | + | chr4_2:6807533-6807552 | Msa0585730:intron | 20.0% |
| !!! | TTCACATTTTCATCTAATAT+GGG | - | chr4_2:6807597-6807616 | None:intergenic | 20.0% |
| !!! | ATTCACATTTTCATCTAATA+TGG | - | chr4_2:6807598-6807617 | None:intergenic | 20.0% |
| !! | TATATATCCAATGTCTTATA+AGG | + | chr4_2:6807645-6807664 | Msa0585730:intron | 20.0% |
| !!! | AAGTAAAAAGTACATATATC+TGG | + | chr4_2:6807990-6808009 | Msa0585730:intron | 20.0% |
| !!! | GGTTTTTTATATAAGCAAAA+AGG | - | chr4_2:6808025-6808044 | None:intergenic | 20.0% |
| !!! | TTTTGCTTATATAAAAAACC+AGG | + | chr4_2:6808025-6808044 | Msa0585730:intron | 20.0% |
| !!! | AGTTACTTTTTGTTGAATTA+AGG | + | chr4_2:6808283-6808302 | Msa0585730:intron | 20.0% |
| !!! | TTTTTTCATTTTATGAATGC+AGG | + | chr4_2:6808335-6808354 | Msa0585730:intron | 20.0% |
| !! | TTTCAAAATGTTCTTGTAAT+CGG | + | chr4_2:6808365-6808384 | Msa0585730:CDS | 20.0% |
| !! | ATATATTTGATTAGGGAAAA+AGG | + | chr4_2:6809261-6809280 | Msa0585730:intron | 20.0% |
| !! | TAAATACTGAATTATTAGCA+TGG | - | chr4_2:6809296-6809315 | None:intergenic | 20.0% |
| !!! | ATTTACTTGTTGATAAATGT+AGG | + | chr4_2:6809311-6809330 | Msa0585730:intron | 20.0% |
| ! | TGTTGGACTAATTAACAAAA+AGG | - | chr4_2:6805798-6805817 | None:intergenic | 25.0% |
| !!! | CACTAGGTTTTAATAAGTTA+TGG | + | chr4_2:6805999-6806018 | Msa0585730:intron | 25.0% |
| !! | TTGATAACTGTTACAAATCA+TGG | + | chr4_2:6806261-6806280 | Msa0585730:intron | 25.0% |
| ! | ACTTTACTATGAGTCTTTAT+GGG | - | chr4_2:6806354-6806373 | None:intergenic | 25.0% |
| !! | AAGATTAATAGGAAGTACAA+TGG | + | chr4_2:6806390-6806409 | Msa0585730:intron | 25.0% |
| !!! | GTTAGTTGATAACTAAACTA+TGG | - | chr4_2:6806479-6806498 | None:intergenic | 25.0% |
| ! | GTTTAGTTATCAACTAACTA+TGG | + | chr4_2:6806481-6806500 | Msa0585730:intron | 25.0% |
| !!! | TTAAATTTTGATGATCGCAA+TGG | + | chr4_2:6806660-6806679 | Msa0585730:intron | 25.0% |
| ! | TAATAAAAAAATTGCACAGG+AGG | - | chr4_2:6806713-6806732 | None:intergenic | 25.0% |
| ! | GTGTAATAAAAAAATTGCAC+AGG | - | chr4_2:6806716-6806735 | None:intergenic | 25.0% |
| ! | TAAAATATGGTTCCAAGTTA+TGG | - | chr4_2:6806876-6806895 | None:intergenic | 25.0% |
| !!! | CTGTAACAAACTCTAAAATA+TGG | - | chr4_2:6806889-6806908 | None:intergenic | 25.0% |
| ! | CGTAAACATCATAAATAGAA+TGG | + | chr4_2:6807099-6807118 | Msa0585730:intron | 25.0% |
| !!! | TGAATTGAATTTGGCTTTTA+TGG | + | chr4_2:6807129-6807148 | Msa0585730:intron | 25.0% |
| ! | CAATTTCTTCTACATACTTA+TGG | - | chr4_2:6807188-6807207 | None:intergenic | 25.0% |
| ! | ATCCTCATTATTACACTAAT+AGG | - | chr4_2:6807259-6807278 | None:intergenic | 25.0% |
| ! | AAATTGAACCAAATCGTTAA+TGG | + | chr4_2:6807331-6807350 | Msa0585730:intron | 25.0% |
| !! | GTTTTCTCTAAATATAGTTC+TGG | - | chr4_2:6807368-6807387 | None:intergenic | 25.0% |
| ! | TCTTACTCACATTTATTACT+AGG | - | chr4_2:6807571-6807590 | None:intergenic | 25.0% |
| !! | TTGATTTTGCTTGATGTTTA+TGG | + | chr4_2:6807760-6807779 | Msa0585730:intron | 25.0% |
| ! | TATGATGAAAACCATAAACA+TGG | - | chr4_2:6808528-6808547 | None:intergenic | 25.0% |
| !! | TGGTTTTCATCATAGTAAAT+AGG | + | chr4_2:6808534-6808553 | Msa0585730:intron | 25.0% |
| !! | GGTTTTCATCATAGTAAATA+GGG | + | chr4_2:6808535-6808554 | Msa0585730:intron | 25.0% |
| ! | GTTATATATGTTTACATTGC+AGG | + | chr4_2:6808644-6808663 | Msa0585730:intron | 25.0% |
| !!! | AGTTTTGATTTGAATAGTGA+TGG | + | chr4_2:6808696-6808715 | Msa0585730:CDS | 25.0% |
| ! | AATGTAATCACATATATCAC+CGG | - | chr4_2:6808784-6808803 | None:intergenic | 25.0% |
| ! | CATGAATATGAATACTTCTT+TGG | - | chr4_2:6809030-6809049 | None:intergenic | 25.0% |
| ! | TATTCATGCATACATATGAA+TGG | + | chr4_2:6809042-6809061 | Msa0585730:CDS | 25.0% |
| !!! | GTTTTGGTCACTTAAATTTA+GGG | - | chr4_2:6809198-6809217 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTCACTTAAATTT+AGG | - | chr4_2:6809199-6809218 | None:intergenic | 25.0% |
| !!! | CTATATGGTATATCACTTTT+AGG | - | chr4_2:6809239-6809258 | None:intergenic | 25.0% |
| !!! | ACATTTGATATCACTTTTTC+TGG | - | chr4_2:6809384-6809403 | None:intergenic | 25.0% |
| ! | AGAAAAAGTGATATCAAATG+TGG | + | chr4_2:6809383-6809402 | Msa0585730:CDS | 25.0% |
| ! | GTATATCACTTGAAAACATA+AGG | - | chr4_2:6809600-6809619 | None:intergenic | 25.0% |
| CATAGTTTAGCATAACACTT+TGG | + | chr4_2:6805740-6805759 | Msa0585730:five_prime_UTR | 30.0% | |
| ! | ATTAGTCCAACATTTTTCCA+TGG | + | chr4_2:6805806-6805825 | Msa0585730:five_prime_UTR | 30.0% |
| ! | ACTAAAGCAAACAAGTTTTG+AGG | - | chr4_2:6805887-6805906 | None:intergenic | 30.0% |
| !! | AGAAATTCTAAGACATACCT+TGG | - | chr4_2:6805940-6805959 | None:intergenic | 30.0% |
| TGTTATAAGATGTAAGGTGT+GGG | - | chr4_2:6806132-6806151 | None:intergenic | 30.0% | |
| TTGTTATAAGATGTAAGGTG+TGG | - | chr4_2:6806133-6806152 | None:intergenic | 30.0% | |
| TCATTATGACCTTTATCTCT+GGG | - | chr4_2:6806290-6806309 | None:intergenic | 30.0% | |
| ATCATTATGACCTTTATCTC+TGG | - | chr4_2:6806291-6806310 | None:intergenic | 30.0% | |
| CACTTTACTATGAGTCTTTA+TGG | - | chr4_2:6806355-6806374 | None:intergenic | 30.0% | |
| CAATGGTGAGAGTTATTTAT+AGG | + | chr4_2:6806407-6806426 | Msa0585730:intron | 30.0% | |
| ! | CTAAACTATGGTTAGTTGAT+AGG | - | chr4_2:6806467-6806486 | None:intergenic | 30.0% |
| GATGCATGTAAATGAAATTG+TGG | + | chr4_2:6806544-6806563 | Msa0585730:intron | 30.0% | |
| CATGTAAATGAAATTGTGGT+TGG | + | chr4_2:6806548-6806567 | Msa0585730:intron | 30.0% | |
| ! | CCTCAATATTAAGGTTTTTG+AGG | - | chr4_2:6806590-6806609 | None:intergenic | 30.0% |
| CCTCAAAAACCTTAATATTG+AGG | + | chr4_2:6806587-6806606 | Msa0585730:intron | 30.0% | |
| ATTTAACATAATAGTCGCCT+TGG | - | chr4_2:6806646-6806665 | None:intergenic | 30.0% | |
| TCATTAGTAATCTCAAGAGT+TGG | - | chr4_2:6806976-6806995 | None:intergenic | 30.0% | |
| ! | TAGTTGATACTTCTGATGAA+TGG | + | chr4_2:6807010-6807029 | Msa0585730:CDS | 30.0% |
| TCTACATACTTATGGAAACA+TGG | - | chr4_2:6807180-6807199 | None:intergenic | 30.0% | |
| AATGAGGATTGTTCATGATT+CGG | + | chr4_2:6807270-6807289 | Msa0585730:intron | 30.0% | |
| !! | CTAAATATAGTTCTGGTTCA+GGG | - | chr4_2:6807361-6807380 | None:intergenic | 30.0% |
| !! | TCTAAATATAGTTCTGGTTC+AGG | - | chr4_2:6807362-6807381 | None:intergenic | 30.0% |
| CTGAAATGATTCTATGTGAA+CGG | + | chr4_2:6807414-6807433 | Msa0585730:intron | 30.0% | |
| ! | TAAGGTTTCAGGTAAAAATG+TGG | + | chr4_2:6807663-6807682 | Msa0585730:intron | 30.0% |
| AATCAAGTCAAACCTTGTTA+GGG | - | chr4_2:6807746-6807765 | None:intergenic | 30.0% | |
| AAATCAAGTCAAACCTTGTT+AGG | - | chr4_2:6807747-6807766 | None:intergenic | 30.0% | |
| ! | TCTACTTCAGATGATCTTTT+TGG | + | chr4_2:6807890-6807909 | Msa0585730:CDS | 30.0% |
| ! | ATATAAGCAAAAAGGTGCAT+TGG | - | chr4_2:6808017-6808036 | None:intergenic | 30.0% |
| TTTCAGATTTCAAAACAGCT+TGG | + | chr4_2:6808162-6808181 | Msa0585730:intron | 30.0% | |
| AGAAGTTCATGTATTCTGTT+TGG | + | chr4_2:6808425-6808444 | Msa0585730:CDS | 30.0% | |
| ! | GTATCGACATTTCTAATCAA+AGG | + | chr4_2:6808753-6808772 | Msa0585730:intron | 30.0% |
| AATGCAGCATATAAAGAAGA+AGG | + | chr4_2:6808958-6808977 | Msa0585730:CDS | 30.0% | |
| ATGCAGCATATAAAGAAGAA+GGG | + | chr4_2:6808959-6808978 | Msa0585730:CDS | 30.0% | |
| TAATGCATCAGACTCAATTA+AGG | + | chr4_2:6808987-6809006 | Msa0585730:CDS | 30.0% | |
| AATGCATCAGACTCAATTAA+GGG | + | chr4_2:6808988-6809007 | Msa0585730:CDS | 30.0% | |
| GAATATGAATACTTCTTTGG+AGG | - | chr4_2:6809027-6809046 | None:intergenic | 30.0% | |
| ATTTGATTAGGGAAAAAGGT+TGG | + | chr4_2:6809265-6809284 | Msa0585730:intron | 30.0% | |
| CCACTACATCAATAATTCTT+TGG | - | chr4_2:6809341-6809360 | None:intergenic | 30.0% | |
| CCAAAGAATTATTGATGTAG+TGG | + | chr4_2:6809338-6809357 | Msa0585730:CDS | 30.0% | |
| !!! | TTGATATCACTTTTTCTGGA+GGG | - | chr4_2:6809380-6809399 | None:intergenic | 30.0% |
| !!! | TTTGATATCACTTTTTCTGG+AGG | - | chr4_2:6809381-6809400 | None:intergenic | 30.0% |
| ATATCAAATGTGGCTGATTA+TGG | + | chr4_2:6809393-6809412 | Msa0585730:CDS | 30.0% | |
| TTAGATGAATCAGTTAGAAG+TGG | + | chr4_2:6809447-6809466 | Msa0585730:CDS | 30.0% | |
| AGTTAGAAGTGGAAAGATTA+AGG | + | chr4_2:6809458-6809477 | Msa0585730:CDS | 30.0% | |
| CATTGACCATGGAAAAATGT+TGG | - | chr4_2:6805815-6805834 | None:intergenic | 35.0% | |
| !!! | ACAAGTTTTGAGGAAATGGA+AGG | - | chr4_2:6805877-6805896 | None:intergenic | 35.0% |
| !!! | GCAAACAAGTTTTGAGGAAA+TGG | - | chr4_2:6805881-6805900 | None:intergenic | 35.0% |
| !! | GTGTGGGTTGATTACATATT+CGG | - | chr4_2:6806116-6806135 | None:intergenic | 35.0% |
| TGATAGAGAAAACTCATTCG+AGG | - | chr4_2:6806169-6806188 | None:intergenic | 35.0% | |
| GAGATGAAAATTCGTCTCAT+AGG | - | chr4_2:6806203-6806222 | None:intergenic | 35.0% | |
| AGTGCATAAGAGTCTTCATA+TGG | + | chr4_2:6806322-6806341 | Msa0585730:intron | 35.0% | |
| GTGCATAAGAGTCTTCATAT+GGG | + | chr4_2:6806323-6806342 | Msa0585730:intron | 35.0% | |
| !! | CTATGGTTAGTTGATAGGTT+AGG | - | chr4_2:6806462-6806481 | None:intergenic | 35.0% |
| CAAATGCGACCTCAATATTA+AGG | - | chr4_2:6806599-6806618 | None:intergenic | 35.0% | |
| ! | TTGACGACAATTTAAAGCCA+AGG | + | chr4_2:6806626-6806645 | Msa0585730:intron | 35.0% |
| AAAAAAATTGCACAGGAGGA+AGG | - | chr4_2:6806709-6806728 | None:intergenic | 35.0% | |
| GTAAGAGTCCAAATTCAACA+AGG | - | chr4_2:6806845-6806864 | None:intergenic | 35.0% | |
| GGTTACAGCTGAATTGAATT+TGG | + | chr4_2:6807120-6807139 | Msa0585730:intron | 35.0% | |
| !!! | TGAATTTGGCTTTTATGGAG+TGG | + | chr4_2:6807134-6807153 | Msa0585730:intron | 35.0% |
| GGCCTATTAGTGTAATAATG+AGG | + | chr4_2:6807254-6807273 | Msa0585730:intron | 35.0% | |
| ! | AACAGTTCGGTTTTCTTTCT+TGG | - | chr4_2:6807297-6807316 | None:intergenic | 35.0% |
| AGAAAACCGAACTGTTACAA+TGG | + | chr4_2:6807301-6807320 | Msa0585730:intron | 35.0% | |
| ACCAAACCATTGTAACAGTT+CGG | - | chr4_2:6807310-6807329 | None:intergenic | 35.0% | |
| TTGATCAGTTCGTGAACTAT+CGG | + | chr4_2:6807473-6807492 | Msa0585730:intron | 35.0% | |
| CCTGAAACCTTATAAGACAT+TGG | - | chr4_2:6807655-6807674 | None:intergenic | 35.0% | |
| CCAATGTCTTATAAGGTTTC+AGG | + | chr4_2:6807652-6807671 | Msa0585730:intron | 35.0% | |
| ACCAAAGAATCATAACACTG+GGG | - | chr4_2:6807706-6807725 | None:intergenic | 35.0% | |
| CACCAAAGAATCATAACACT+GGG | - | chr4_2:6807707-6807726 | None:intergenic | 35.0% | |
| ACACCAAAGAATCATAACAC+TGG | - | chr4_2:6807708-6807727 | None:intergenic | 35.0% | |
| TAGATGAACACACCAAGATT+AGG | - | chr4_2:6807874-6807893 | None:intergenic | 35.0% | |
| CTATAACCAATACTAACCTG+AGG | - | chr4_2:6807923-6807942 | None:intergenic | 35.0% | |
| !! | CTCAGGTTAGTATTGGTTAT+AGG | + | chr4_2:6807921-6807940 | Msa0585730:intron | 35.0% |
| !! | GCATGTAGTGGATTTATCTT+TGG | + | chr4_2:6808222-6808241 | Msa0585730:CDS | 35.0% |
| CTCTTTCGAGATATATCGAT+TGG | + | chr4_2:6808396-6808415 | Msa0585730:CDS | 35.0% | |
| CAGAATACATGAACTTCTGT+CGG | - | chr4_2:6808423-6808442 | None:intergenic | 35.0% | |
| !! | ACTTTTGTTTGTCAACACTG+AGG | - | chr4_2:6808494-6808513 | None:intergenic | 35.0% |
| !! | TCAGTGTTGACAAACAAAAG+TGG | + | chr4_2:6808493-6808512 | Msa0585730:intron | 35.0% |
| GGCTAACTATACCATGTTTA+TGG | + | chr4_2:6808514-6808533 | Msa0585730:intron | 35.0% | |
| ! | GATTTGAATAGTGATGGTGA+TGG | + | chr4_2:6808702-6808721 | Msa0585730:CDS | 35.0% |
| TAGAAATGTCGATACTGCAA+AGG | - | chr4_2:6808748-6808767 | None:intergenic | 35.0% | |
| !! | AAGCACTGACACATATACAT+TGG | - | chr4_2:6808862-6808881 | None:intergenic | 35.0% |
| TGCAGCATATAAAGAAGAAG+GGG | + | chr4_2:6808960-6808979 | Msa0585730:CDS | 35.0% | |
| AATTGAGTCAGCACTTCAAA+AGG | + | chr4_2:6809107-6809126 | Msa0585730:CDS | 35.0% | |
| !!! | TATTTTTGGTCCTTACCTGA+TGG | - | chr4_2:6809170-6809189 | None:intergenic | 35.0% |
| ! | TTCATCTAAAGCCAATGGAA+TGG | - | chr4_2:6809436-6809455 | None:intergenic | 35.0% |
| ! | ACTGATTCATCTAAAGCCAA+TGG | - | chr4_2:6809441-6809460 | None:intergenic | 35.0% |
| AGAAGTGGAAAGATTAAGGA+AGG | + | chr4_2:6809462-6809481 | Msa0585730:CDS | 35.0% | |
| !!! | GGGATCAGCTATTTTTCAAT+GGG | + | chr4_2:6809527-6809546 | Msa0585730:CDS | 35.0% |
| !!! | GGATCAGCTATTTTTCAATG+GGG | + | chr4_2:6809528-6809547 | Msa0585730:CDS | 35.0% |
| !!! | GCTATTTTTCAATGGGGATA+AGG | + | chr4_2:6809534-6809553 | Msa0585730:CDS | 35.0% |
| ! | GTTGGTAGATACATTGACCA+TGG | - | chr4_2:6805826-6805845 | None:intergenic | 40.0% |
| GAAATGGAAGGTGATAAGAG+GGG | - | chr4_2:6805865-6805884 | None:intergenic | 40.0% | |
| GGAAATGGAAGGTGATAAGA+GGG | - | chr4_2:6805866-6805885 | None:intergenic | 40.0% | |
| AGGAAATGGAAGGTGATAAG+AGG | - | chr4_2:6805867-6805886 | None:intergenic | 40.0% | |
| ! | TCTAAGACATACCTTGGCAA+AGG | - | chr4_2:6805934-6805953 | None:intergenic | 40.0% |
| CAATCACAATCGTCATCACT+AGG | + | chr4_2:6806079-6806098 | Msa0585730:intron | 40.0% | |
| TCATGGAATCCCAGAGATAA+AGG | + | chr4_2:6806278-6806297 | Msa0585730:intron | 40.0% | |
| !! | AGTTGATAGGTTAGGTGGTT+AGG | - | chr4_2:6806454-6806473 | None:intergenic | 40.0% |
| !! | TGGTTAGTTGATAGGTTAGG+TGG | - | chr4_2:6806459-6806478 | None:intergenic | 40.0% |
| TCCTGCATCCTTGTTGAATT+TGG | + | chr4_2:6806834-6806853 | Msa0585730:intron | 40.0% | |
| TCCAAATTCAACAAGGATGC+AGG | - | chr4_2:6806838-6806857 | None:intergenic | 40.0% | |
| TTACTCTCAGTGCCATAACT+TGG | + | chr4_2:6806861-6806880 | Msa0585730:intron | 40.0% | |
| !! | CTTTGCAGACTTGTTAGTCA+AGG | + | chr4_2:6806919-6806938 | Msa0585730:intron | 40.0% |
| ACCGAACTGTTACAATGGTT+TGG | + | chr4_2:6807306-6807325 | Msa0585730:intron | 40.0% | |
| TGAACCAAATCGTTAATGGC+CGG | + | chr4_2:6807335-6807354 | Msa0585730:intron | 40.0% | |
| AGTTTCTCTCTTCCCTAACA+AGG | + | chr4_2:6807731-6807750 | Msa0585730:intron | 40.0% | |
| TGCTTGATGTTTATGGTTGC+AGG | + | chr4_2:6807767-6807786 | Msa0585730:intron | 40.0% | |
| TTGATGTTTATGGTTGCAGG+TGG | + | chr4_2:6807770-6807789 | Msa0585730:intron | 40.0% | |
| CTTGACCACTTTATCAGTAG+AGG | + | chr4_2:6807799-6807818 | Msa0585730:CDS | 40.0% | |
| AAGATTAGGTCAACATCACC+TGG | - | chr4_2:6807860-6807879 | None:intergenic | 40.0% | |
| AGGTGATGTTGACCTAATCT+TGG | + | chr4_2:6807859-6807878 | Msa0585730:CDS | 40.0% | |
| !! | TCAGATGATCTTTTTGGCAC+TGG | + | chr4_2:6807896-6807915 | Msa0585730:CDS | 40.0% |
| AGTTTCTGCAATGTACTTCC+TGG | - | chr4_2:6808046-6808065 | None:intergenic | 40.0% | |
| GCTGTAATGTTATAAGCTGC+TGG | - | chr4_2:6808201-6808220 | None:intergenic | 40.0% | |
| AACATTACAGCTGCATGTAG+TGG | + | chr4_2:6808210-6808229 | Msa0585730:CDS | 40.0% | |
| TATCAGCTGCTAGTCACATT+AGG | + | chr4_2:6808250-6808269 | Msa0585730:CDS | 40.0% | |
| ATCAGCTGCTAGTCACATTA+GGG | + | chr4_2:6808251-6808270 | Msa0585730:CDS | 40.0% | |
| TTGTTTGTCAACACTGAGGA+AGG | - | chr4_2:6808490-6808509 | None:intergenic | 40.0% | |
| ATGTCGATACTGCAAAGGTA+AGG | - | chr4_2:6808743-6808762 | None:intergenic | 40.0% | |
| ! | TTTCTAATCAAAGGCGTGTC+CGG | + | chr4_2:6808762-6808781 | Msa0585730:intron | 40.0% |
| ACCATAGTTTCGCTTCATGT+AGG | + | chr4_2:6808929-6808948 | Msa0585730:intron | 40.0% | |
| AGACTCAATTAAGGGTGAGT+TGG | + | chr4_2:6808996-6809015 | Msa0585730:CDS | 40.0% | |
| !! | AGTGCTGACTCAATTGACTT+TGG | - | chr4_2:6809102-6809121 | None:intergenic | 40.0% |
| GAGAAGTAACCAATCAATGC+TGG | - | chr4_2:6809148-6809167 | None:intergenic | 40.0% | |
| ! | TGATTGGTTACTTCTCCATC+AGG | + | chr4_2:6809152-6809171 | Msa0585730:CDS | 40.0% |
| ! | GGACAAATTATTGCTGCTTC+TGG | + | chr4_2:6809483-6809502 | Msa0585730:CDS | 40.0% |
| !! | ATTATTGCTGCTTCTGGCTT+TGG | + | chr4_2:6809489-6809508 | Msa0585730:CDS | 40.0% |
| !!! | GGGGATCAGCTATTTTTCAA+TGG | + | chr4_2:6809526-6809545 | Msa0585730:CDS | 40.0% |
| GGGATAAGGTCTTACTTTGA+GGG | + | chr4_2:6809548-6809567 | Msa0585730:exon | 40.0% | |
| GGAAGATGAAGGAGTGAAGT+TGG | - | chr4_2:6805844-6805863 | None:intergenic | 45.0% | |
| GTGATAAGAGGGGAAGATGA+AGG | - | chr4_2:6805855-6805874 | None:intergenic | 45.0% | |
| ATACCTTGGCAAAGGAGGTT+GGG | - | chr4_2:6805926-6805945 | None:intergenic | 45.0% | |
| AAGACATACCTTGGCAAAGG+AGG | - | chr4_2:6805931-6805950 | None:intergenic | 45.0% | |
| GAATGGATAAGTGTTCGCAC+CGG | + | chr4_2:6807027-6807046 | Msa0585730:CDS | 45.0% | |
| AATGGATAAGTGTTCGCACC+GGG | + | chr4_2:6807028-6807047 | Msa0585730:CDS | 45.0% | |
| AACTCGACGTTTACGAATCC+CGG | - | chr4_2:6807049-6807068 | None:intergenic | 45.0% | |
| CGTAAACGTCGAGTTCTTTC+AGG | + | chr4_2:6807054-6807073 | Msa0585730:CDS | 45.0% | |
| !! | ATATAGTTCTGGTTCAGGGC+CGG | - | chr4_2:6807357-6807376 | None:intergenic | 45.0% |
| TTCAGCTCTTTCGTGCGATT+TGG | + | chr4_2:6807502-6807521 | Msa0585730:intron | 45.0% | |
| !! | CTCTTTCGTGCGATTTGGTT+TGG | + | chr4_2:6807507-6807526 | Msa0585730:intron | 45.0% |
| GCCCCAGTGTTATGATTCTT+TGG | + | chr4_2:6807702-6807721 | Msa0585730:intron | 45.0% | |
| TGCTGCCTCTACTGATAAAG+TGG | - | chr4_2:6807807-6807826 | None:intergenic | 45.0% | |
| CTTTATCAGTAGAGGCAGCA+AGG | + | chr4_2:6807807-6807826 | Msa0585730:CDS | 45.0% | |
| AGCAAGGAAAGCTCTTGAGA+TGG | + | chr4_2:6807823-6807842 | Msa0585730:CDS | 45.0% | |
| GAAAGCTCTTGAGATGGCAA+AGG | + | chr4_2:6807829-6807848 | Msa0585730:CDS | 45.0% | |
| ACTGGTCCTCAGGTTAGTAT+TGG | + | chr4_2:6807914-6807933 | Msa0585730:intron | 45.0% | |
| TCAGCTGCTAGTCACATTAG+GGG | + | chr4_2:6808252-6808271 | Msa0585730:CDS | 45.0% | |
| ATTCTGTTTGGAGATGCTGC+TGG | + | chr4_2:6808437-6808456 | Msa0585730:CDS | 45.0% | |
| GCCTACATGAAGCGAAACTA+TGG | - | chr4_2:6808933-6808952 | None:intergenic | 45.0% | |
| !! | TACCTGCATCCAGCATTGAT+TGG | + | chr4_2:6809136-6809155 | Msa0585730:CDS | 45.0% |
| AACCAATCAATGCTGGATGC+AGG | - | chr4_2:6809141-6809160 | None:intergenic | 45.0% | |
| GGTTACTTCTCCATCAGGTA+AGG | + | chr4_2:6809157-6809176 | Msa0585730:intron | 45.0% | |
| AAGTGCAGCTTCCATTCCAT+TGG | + | chr4_2:6809422-6809441 | Msa0585730:CDS | 45.0% | |
| !! | CTTTGGTGCTGGTCTTACTT+GGG | + | chr4_2:6809506-6809525 | Msa0585730:CDS | 45.0% |
| !! | TTTGGTGCTGGTCTTACTTG+GGG | + | chr4_2:6809507-6809526 | Msa0585730:CDS | 45.0% |
| GGGGATAAGGTCTTACTTTG+AGG | + | chr4_2:6809547-6809566 | Msa0585730:exon | 45.0% | |
| GCAAAGGAGGTTGGGAATCA+TGG | - | chr4_2:6805918-6805937 | None:intergenic | 50.0% | |
| ATTCCCAACCTCCTTTGCCA+AGG | + | chr4_2:6805920-6805939 | Msa0585730:CDS | 50.0% | |
| CATACCTTGGCAAAGGAGGT+TGG | - | chr4_2:6805927-6805946 | None:intergenic | 50.0% | |
| TGTTAGTCAAGGCTGCAAGC+TGG | + | chr4_2:6806930-6806949 | Msa0585730:CDS | 50.0% | |
| ! | GAGATGGCAAAGGTTGATCC+AGG | + | chr4_2:6807839-6807858 | Msa0585730:CDS | 50.0% |
| !!! | TCTTTTTGGCACTGGTCCTC+AGG | + | chr4_2:6807904-6807923 | Msa0585730:CDS | 50.0% |
| !! | TGCTGGTGCTGTTCTAGTAC+AGG | + | chr4_2:6808454-6808473 | Msa0585730:CDS | 50.0% |
| GAGTCAGCACTTCAAAAGGC+TGG | + | chr4_2:6809111-6809130 | Msa0585730:CDS | 50.0% | |
| !! | GCTTTGGTGCTGGTCTTACT+TGG | + | chr4_2:6809505-6809524 | Msa0585730:CDS | 50.0% |
| TTGCACAGGAGGAAGGCAAG+CGG | - | chr4_2:6806702-6806721 | None:intergenic | 55.0% | |
| AGTCAAGGCTGCAAGCTGGT+AGG | + | chr4_2:6806934-6806953 | Msa0585730:CDS | 55.0% | |
| AGGGCCGGCCATTAACGATT+TGG | - | chr4_2:6807342-6807361 | None:intergenic | 55.0% | |
| ATTGCAGGCGTGCAACTACG+AGG | + | chr4_2:6808659-6808678 | Msa0585730:intron | 55.0% | |
| TGCACAGGAGGAAGGCAAGC+GGG | - | chr4_2:6806701-6806720 | None:intergenic | 60.0% | |
| GGCTGCAAGCTGGTAGGATG+TGG | + | chr4_2:6806940-6806959 | Msa0585730:CDS | 60.0% | |
| !! | GCTGCTTCTGGCTTTGGTGC+TGG | + | chr4_2:6809495-6809514 | Msa0585730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6805717 | 6809685 | 6805717 | ID=Msa0585730;Name=Msa0585730 |
| chr4_2 | mRNA | 6805717 | 6809685 | 6805717 | ID=Msa0585730-mRNA-1;Parent=Msa0585730;Name=Msa0585730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=115|1|1|1|1|1|8|131|376 |
| chr4_2 | exon | 6805717 | 6805941 | 6805717 | ID=Msa0585730-mRNA-1:exon:1684;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6806927 | 6807075 | 6806927 | ID=Msa0585730-mRNA-1:exon:1685;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6807789 | 6807925 | 6807789 | ID=Msa0585730-mRNA-1:exon:1686;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6808168 | 6808273 | 6808168 | ID=Msa0585730-mRNA-1:exon:1687;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6808357 | 6808475 | 6808357 | ID=Msa0585730-mRNA-1:exon:1688;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6808666 | 6808730 | 6808666 | ID=Msa0585730-mRNA-1:exon:1689;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6808951 | 6809173 | 6808951 | ID=Msa0585730-mRNA-1:exon:1690;Parent=Msa0585730-mRNA-1 |
| chr4_2 | exon | 6809333 | 6809685 | 6809333 | ID=Msa0585730-mRNA-1:exon:1691;Parent=Msa0585730-mRNA-1 |
| chr4_2 | five_prime_UTR | 6805717 | 6805831 | 6805717 | ID=Msa0585730-mRNA-1:five_prime_utr;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6805832 | 6805941 | 6805832 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6806927 | 6807075 | 6806927 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6807789 | 6807925 | 6807789 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6808168 | 6808273 | 6808168 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6808357 | 6808475 | 6808357 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6808666 | 6808730 | 6808666 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6808951 | 6809173 | 6808951 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | CDS | 6809333 | 6809554 | 6809333 | ID=Msa0585730-mRNA-1:cds;Parent=Msa0585730-mRNA-1 |
| chr4_2 | three_prime_UTR | 6809555 | 6809685 | 6809555 | ID=Msa0585730-mRNA-1:three_prime_utr;Parent=Msa0585730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
