AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0615070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615070 MtrunA17_Chr4g0051181 93.927 494 21 5 1 492 1 487 0.0 872
Msa0615070 MtrunA17_Chr7g0216891 44.891 274 122 7 65 322 33 293 1.73e-53 189
Msa0615070 MtrunA17_Chr4g0060271 39.869 306 161 8 21 309 17 316 9.61e-52 185
Msa0615070 MtrunA17_Chr7g0270831 42.292 253 99 6 230 481 198 404 4.69e-49 174
Msa0615070 MtrunA17_Chr3g0099641 42.742 248 103 8 232 478 235 444 1.08e-48 174
Msa0615070 MtrunA17_Chr2g0288871 40.244 246 121 5 69 308 140 365 2.87e-48 174
Msa0615070 MtrunA17_Chr2g0322391 33.700 454 225 15 55 478 148 555 3.39e-48 175
Msa0615070 MtrunA17_Chr4g0075201 32.458 419 223 13 55 468 103 466 1.08e-41 155
Msa0615070 MtrunA17_Chr2g0302391 51.974 152 62 3 232 380 195 338 8.22e-41 151
Msa0615070 MtrunA17_Chr4g0025061 62.766 94 35 0 233 326 345 438 5.95e-37 144
Msa0615070 MtrunA17_Chr4g0024391 45.185 135 65 3 197 326 177 307 2.59e-32 129
Msa0615070 MtrunA17_Chr4g0001361 43.200 125 58 3 231 343 140 263 1.20e-26 110
Msa0615070 MtrunA17_Chr3g0136961 45.045 111 51 2 205 305 85 195 1.53e-25 106
Msa0615070 MtrunA17_Chr1g0150281 43.396 106 60 0 228 333 120 225 1.30e-24 103
Msa0615070 MtrunA17_Chr1g0150271 36.496 137 84 2 174 308 26 161 1.39e-24 102
Msa0615070 MtrunA17_Chr5g0445311 50.526 95 46 1 230 324 346 439 2.11e-24 106
Msa0615070 MtrunA17_Chr5g0445311 52.459 61 27 2 248 308 200 258 4.13e-12 68.6
Msa0615070 MtrunA17_Chr2g0333851 53.086 81 33 2 233 308 149 229 2.13e-23 100
Msa0615070 MtrunA17_Chr3g0106491 53.846 78 35 1 232 309 349 425 2.67e-23 102
Msa0615070 MtrunA17_Chr3g0106491 53.226 62 27 2 248 309 198 257 9.32e-15 76.6
Msa0615070 MtrunA17_Chr4g0004911 51.899 79 37 1 232 310 320 397 3.23e-23 102
Msa0615070 MtrunA17_Chr4g0004911 44.872 78 40 2 231 308 169 243 6.50e-15 77.0
Msa0615070 MtrunA17_Chr7g0218081 44.444 117 58 3 229 339 387 502 4.52e-23 102
Msa0615070 MtrunA17_Chr7g0218081 51.724 58 26 2 248 305 228 283 3.48e-11 65.5
Msa0615070 MtrunA17_Chr3g0101131 55.000 80 35 1 230 309 397 475 7.40e-23 102
Msa0615070 MtrunA17_Chr3g0101131 33.333 147 90 4 248 393 243 382 6.54e-12 67.8
Msa0615070 MtrunA17_Chr3g0079691 50.000 90 44 1 232 321 479 567 1.05e-22 101
Msa0615070 MtrunA17_Chr3g0079691 51.667 60 27 2 249 308 281 338 2.67e-12 69.3
Msa0615070 MtrunA17_Chr7g0243891 53.165 79 36 1 232 310 358 435 1.34e-22 100
Msa0615070 MtrunA17_Chr7g0243891 37.398 123 71 4 187 308 157 274 2.75e-14 75.1
Msa0615070 MtrunA17_Chr5g0432161 53.846 78 35 1 232 309 405 481 1.39e-22 101
Msa0615070 MtrunA17_Chr5g0432161 54.098 61 26 2 248 308 244 302 3.57e-14 75.1
Msa0615070 MtrunA17_Chr5g0419241 82.979 47 8 0 232 278 61 107 2.11e-22 92.0
Msa0615070 MtrunA17_Chr5g0447701 50.000 86 42 1 233 318 237 321 3.03e-22 98.6
Msa0615070 MtrunA17_Chr5g0418191 45.192 104 52 2 220 323 296 394 5.26e-22 98.2
Msa0615070 MtrunA17_Chr5g0418191 39.623 106 51 4 214 308 106 209 7.67e-14 73.6
Msa0615070 MtrunA17_Chr7g0270191 44.944 89 48 1 232 320 129 216 1.60e-21 94.7
Msa0615070 MtrunA17_Chr2g0294231 46.237 93 49 1 232 324 187 278 2.06e-21 95.9
Msa0615070 MtrunA17_Chr4g0042831 48.276 87 44 1 233 319 263 348 3.40e-21 95.5
Msa0615070 MtrunA17_Chr7g0249311 50.633 79 38 1 232 310 376 453 3.89e-21 97.1
Msa0615070 MtrunA17_Chr7g0249301 50.633 79 38 1 232 310 276 353 4.34e-21 95.1
Msa0615070 MtrunA17_Chr7g0249301 49.206 63 30 2 246 308 60 120 9.07e-11 63.5
Msa0615070 MtrunA17_Chr1g0150801 51.351 74 35 1 233 306 87 159 5.26e-21 89.7
Msa0615070 MtrunA17_Chr4g0074001 51.250 80 38 1 230 309 341 419 7.95e-21 95.5
Msa0615070 MtrunA17_Chr7g0263531 50.649 77 37 1 236 312 349 424 1.90e-20 93.6
Msa0615070 MtrunA17_Chr7g0263531 46.250 80 37 3 249 328 190 263 2.93e-13 71.6
Msa0615070 MtrunA17_Chr7g0270051 54.054 74 31 1 248 321 53 123 2.72e-20 90.5
Msa0615070 MtrunA17_Chr4g0053281 38.095 126 49 2 205 330 242 338 2.94e-20 92.0
Msa0615070 MtrunA17_Chr4g0051881 40.385 104 57 2 235 338 165 263 4.70e-20 91.3
Msa0615070 MtrunA17_Chr7g0224801 50.704 71 34 1 237 307 82 151 8.91e-20 86.7
Msa0615070 MtrunA17_Chr1g0194481 50.649 77 37 1 232 308 142 217 9.81e-20 90.1
Msa0615070 MtrunA17_Chr8g0383251 48.000 75 38 1 235 309 95 168 6.20e-19 84.7
Msa0615070 MtrunA17_Chr5g0401821 61.818 55 21 0 253 307 204 258 1.18e-18 85.9
Msa0615070 MtrunA17_Chr8g0379461 56.923 65 28 0 248 312 76 140 1.20e-18 85.5
Msa0615070 MtrunA17_Chr4g0068541 48.718 78 39 1 232 309 192 268 1.45e-18 87.8
Msa0615070 MtrunA17_Chr1g0188941 46.154 78 41 1 231 308 34 110 1.89e-18 81.3
Msa0615070 MtrunA17_Chr1g0184691 57.895 57 24 0 249 305 294 350 2.51e-18 86.7
Msa0615070 MtrunA17_Chr5g0443131 49.333 75 37 1 235 309 144 217 3.93e-18 85.1
Msa0615070 MtrunA17_Chr2g0319961 49.367 79 40 0 239 317 71 149 4.43e-18 84.0
Msa0615070 MtrunA17_Chr1g0147881 39.796 98 40 1 208 305 241 319 8.11e-18 84.7
Msa0615070 MtrunA17_Chr8g0348311 40.625 96 54 1 225 317 129 224 1.16e-17 84.3
Msa0615070 MtrunA17_Chr2g0293481 48.000 75 39 0 249 323 268 342 1.90e-17 84.7
Msa0615070 MtrunA17_Chr8g0386241 44.000 75 41 1 233 307 88 161 3.39e-17 79.7
Msa0615070 MtrunA17_Chr5g0418781 44.086 93 50 2 232 323 108 199 5.97e-17 81.3
Msa0615070 MtrunA17_Chr8g0335811 47.297 74 38 1 232 305 138 210 1.46e-16 79.0
Msa0615070 MtrunA17_Chr3g0129321 45.455 77 41 1 235 311 105 180 1.58e-16 78.2
Msa0615070 MtrunA17_Chr7g0228941 54.386 57 26 0 249 305 53 109 2.91e-16 75.1
Msa0615070 MtrunA17_Chr4g0071521 46.154 78 33 1 248 325 245 313 3.98e-16 79.3
Msa0615070 MtrunA17_Chr7g0248721 51.389 72 33 2 235 306 128 197 4.26e-16 77.4
Msa0615070 MtrunA17_Chr2g0284321 52.459 61 29 0 248 308 35 95 4.68e-16 77.0
Msa0615070 MtrunA17_Chr7g0248691 50.769 65 32 0 253 317 159 223 5.15e-16 79.3
Msa0615070 MtrunA17_Chr8g0387501 43.836 73 41 0 245 317 126 198 8.81e-16 77.4
Msa0615070 MtrunA17_Chr3g0129361 44.595 74 40 1 232 305 128 200 1.39e-15 75.9
Msa0615070 MtrunA17_Chr3g0139021 48.000 75 35 1 235 305 297 371 1.81e-15 78.2
Msa0615070 MtrunA17_Chr2g0289181 50.000 60 30 0 249 308 15 74 3.14e-15 75.1
Msa0615070 MtrunA17_Chr7g0238921 47.222 72 36 2 235 305 110 180 1.36e-14 74.7
Msa0615070 MtrunA17_Chr8g0383351 51.667 60 28 1 246 305 158 216 2.20e-14 72.8
Msa0615070 MtrunA17_Chr5g0432071 36.458 96 59 2 248 343 104 197 2.21e-14 72.0
Msa0615070 MtrunA17_Chr1g0202461 47.761 67 35 0 249 315 262 328 1.25e-13 72.4
Msa0615070 MtrunA17_Chr6g0485431 46.250 80 41 2 231 309 137 215 1.52e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615070 AT1G68150.1 45.932 381 143 12 10 374 27 360 1.77e-85 268
Msa0615070 AT5G15130.1 41.611 298 137 8 52 322 14 301 2.67e-54 191
Msa0615070 AT5G15130.2 86.813 91 12 0 232 322 169 259 8.55e-53 186
Msa0615070 AT4G04450.2 44.961 258 115 4 225 478 175 409 2.99e-52 183
Msa0615070 AT4G04450.1 44.961 258 115 4 225 478 269 503 1.29e-51 183
Msa0615070 AT1G62300.1 32.485 511 257 16 13 479 73 539 1.40e-47 173
Msa0615070 AT1G18860.1 41.379 290 124 6 232 478 223 509 4.49e-46 168
Msa0615070 AT4G01720.1 46.964 247 106 5 230 475 221 443 1.44e-45 166
Msa0615070 AT4G22070.4 35.556 315 171 5 19 308 50 357 2.08e-43 161
Msa0615070 AT4G22070.3 35.556 315 171 5 19 308 50 357 2.08e-43 161
Msa0615070 AT4G22070.2 35.556 315 171 5 19 308 50 357 2.08e-43 161
Msa0615070 AT4G22070.1 35.556 315 171 5 19 308 50 357 2.08e-43 161
Msa0615070 AT1G69810.1 34.191 272 146 8 69 322 22 278 7.39e-36 137
Msa0615070 AT1G69810.2 63.043 92 33 1 232 322 129 220 3.97e-35 134
Msa0615070 AT4G31800.1 50.962 104 45 3 233 331 156 258 7.31e-26 107
Msa0615070 AT4G31800.2 50.962 104 45 3 233 331 91 193 7.88e-26 106
Msa0615070 AT1G80840.1 58.462 65 27 0 244 308 142 206 9.55e-25 104
Msa0615070 AT2G25000.2 61.905 63 24 0 246 308 101 163 2.10e-23 99.0
Msa0615070 AT2G25000.4 61.905 63 24 0 246 308 101 163 2.10e-23 99.0
Msa0615070 AT2G38470.1 41.463 123 71 1 232 354 346 467 2.40e-23 103
Msa0615070 AT2G38470.1 48.101 79 37 4 230 308 168 242 5.90e-14 74.7
Msa0615070 AT2G25000.1 61.905 63 24 0 246 308 144 206 4.16e-23 99.4
Msa0615070 AT2G25000.3 61.905 63 24 0 246 308 123 185 4.20e-23 98.6
Msa0615070 AT5G49520.1 37.500 160 85 6 232 380 205 360 6.71e-23 100
Msa0615070 AT5G56270.1 55.128 78 34 1 232 309 471 547 6.76e-23 102
Msa0615070 AT5G56270.1 48.438 64 31 2 245 308 270 331 5.03e-11 65.5
Msa0615070 AT4G26640.5 53.750 80 36 1 230 309 187 265 1.20e-22 100
Msa0615070 AT4G26640.5 45.714 70 36 2 239 308 26 93 1.13e-11 67.0
Msa0615070 AT4G26640.6 53.750 80 36 1 230 309 187 265 1.20e-22 100
Msa0615070 AT4G26640.6 45.714 70 36 2 239 308 26 93 1.13e-11 67.0
Msa0615070 AT4G26640.4 53.750 80 36 1 230 309 187 265 1.20e-22 100
Msa0615070 AT4G26640.4 45.714 70 36 2 239 308 26 93 1.13e-11 67.0
Msa0615070 AT4G26640.3 53.750 80 36 1 230 309 187 265 1.20e-22 100
Msa0615070 AT4G26640.3 45.714 70 36 2 239 308 26 93 1.13e-11 67.0
Msa0615070 AT5G26170.1 54.167 72 32 1 234 305 99 169 1.43e-22 95.1
Msa0615070 AT1G13960.2 48.352 91 42 2 218 308 230 315 2.68e-22 98.6
Msa0615070 AT1G13960.2 54.098 61 26 2 248 308 76 134 7.88e-14 73.2
Msa0615070 AT4G26640.1 53.750 80 36 1 230 309 291 369 3.15e-22 99.8
Msa0615070 AT4G26640.1 45.714 70 36 2 239 308 130 197 1.76e-11 66.6
Msa0615070 AT4G26640.7 53.750 80 36 1 230 309 323 401 3.29e-22 100
Msa0615070 AT4G26640.7 45.714 70 36 2 239 308 162 229 1.73e-11 67.0
Msa0615070 AT1G29860.1 53.247 77 35 1 232 308 120 195 3.55e-22 96.7
Msa0615070 AT2G04880.2 53.247 77 35 1 234 310 269 344 3.85e-22 99.4
Msa0615070 AT2G04880.2 36.000 100 49 3 246 332 109 206 5.73e-13 71.2
Msa0615070 AT1G13960.1 47.917 96 44 3 213 308 379 468 4.18e-22 99.8
Msa0615070 AT1G13960.1 54.098 61 26 2 248 308 229 287 9.57e-14 73.9
Msa0615070 AT4G26640.2 53.750 80 36 1 230 309 363 441 4.27e-22 100
Msa0615070 AT4G26640.2 45.714 70 36 2 239 308 202 269 2.06e-11 66.6
Msa0615070 AT5G46350.1 45.536 112 56 3 235 345 170 277 4.86e-22 97.4
Msa0615070 AT2G04880.1 53.247 77 35 1 234 310 293 368 5.90e-22 99.0
Msa0615070 AT2G04880.1 45.588 68 35 2 246 313 109 174 8.26e-13 70.9
Msa0615070 AT3G01080.1 45.833 96 47 2 213 308 275 365 1.50e-21 97.4
Msa0615070 AT3G01080.2 45.833 96 47 2 213 308 313 403 1.96e-21 97.4
Msa0615070 AT4G30935.1 43.810 105 53 2 226 325 309 412 2.43e-21 97.1
Msa0615070 AT4G18170.1 51.282 78 37 1 232 309 156 232 3.28e-21 94.7
Msa0615070 AT2G03340.1 45.745 94 46 2 220 313 391 479 4.05e-21 96.7
Msa0615070 AT2G03340.1 54.098 61 26 2 248 308 250 308 4.38e-14 75.1
Msa0615070 AT5G13080.1 50.685 73 35 1 235 307 54 125 4.91e-21 89.7
Msa0615070 AT5G07100.2 50.649 77 37 1 232 308 125 200 1.64e-20 90.5
Msa0615070 AT5G07100.2 43.421 76 42 1 246 321 22 96 2.42e-13 69.7
Msa0615070 AT5G07100.4 50.649 77 37 1 232 308 125 200 1.64e-20 90.5
Msa0615070 AT5G07100.4 43.421 76 42 1 246 321 22 96 2.42e-13 69.7
Msa0615070 AT5G07100.5 50.649 77 37 1 232 308 125 200 1.64e-20 90.5
Msa0615070 AT5G07100.5 43.421 76 42 1 246 321 22 96 2.42e-13 69.7
Msa0615070 AT5G07100.3 50.649 77 37 1 232 308 125 200 1.64e-20 90.5
Msa0615070 AT5G07100.3 43.421 76 42 1 246 321 22 96 2.42e-13 69.7
Msa0615070 AT5G07100.1 50.649 77 37 1 232 308 218 293 2.83e-20 92.0
Msa0615070 AT5G07100.1 43.421 76 42 1 246 321 115 189 7.83e-13 69.7
Msa0615070 AT3G62340.1 42.105 114 61 2 235 344 105 217 3.16e-20 91.3
Msa0615070 AT2G47260.1 44.898 98 48 3 232 324 158 254 5.94e-20 91.3
Msa0615070 AT1G29280.1 50.704 71 35 0 239 309 65 135 8.47e-20 89.4
Msa0615070 AT3G04670.1 66.038 53 18 0 253 305 267 319 2.42e-19 89.4
Msa0615070 AT5G41570.1 51.389 72 34 1 235 306 85 155 2.57e-19 85.9
Msa0615070 AT4G24240.1 48.315 89 40 2 232 314 259 347 3.34e-19 89.4
Msa0615070 AT4G26440.1 32.984 191 92 7 231 415 355 515 3.54e-19 90.9
Msa0615070 AT2G23320.1 51.899 79 34 1 233 307 221 299 3.62e-19 88.6
Msa0615070 AT5G64810.1 50.704 71 34 1 235 305 97 166 8.03e-19 85.1
Msa0615070 AT1G64000.1 51.389 72 34 1 235 306 101 171 1.11e-18 84.7
Msa0615070 AT2G30590.1 61.404 57 21 1 253 308 318 374 1.42e-18 87.8
Msa0615070 AT4G31550.1 40.594 101 41 1 205 305 222 303 1.51e-18 87.0
Msa0615070 AT2G30250.1 48.718 78 39 1 232 309 312 388 1.73e-18 87.8
Msa0615070 AT5G28650.1 62.264 53 20 0 253 305 267 319 1.80e-18 87.0
Msa0615070 AT2G24570.1 41.584 101 40 1 205 305 219 300 2.09e-18 86.7
Msa0615070 AT4G31550.2 40.816 98 39 1 208 305 224 302 2.15e-18 86.7
Msa0615070 AT1G55600.1 45.455 77 41 1 232 308 291 366 2.19e-18 88.2
Msa0615070 AT2G46130.1 52.778 72 33 1 235 306 17 87 2.79e-18 80.9
Msa0615070 AT1G69310.4 50.000 74 36 1 232 305 131 203 4.44e-18 85.1
Msa0615070 AT1G69310.2 50.000 74 36 1 232 305 131 203 4.44e-18 85.1
Msa0615070 AT1G69310.1 50.000 74 36 1 232 305 131 203 4.44e-18 85.1
Msa0615070 AT3G58710.1 45.161 93 48 1 239 331 62 151 8.03e-18 84.0
Msa0615070 AT3G58710.2 45.161 93 48 1 239 331 61 150 8.94e-18 84.0
Msa0615070 AT3G01970.1 50.000 72 35 1 234 305 51 121 9.69e-18 80.5
Msa0615070 AT2G37260.3 56.923 65 27 1 243 307 264 327 5.66e-17 82.8
Msa0615070 AT2G37260.3 40.566 106 55 4 223 324 58 159 2.17e-14 75.1
Msa0615070 AT2G37260.2 56.923 65 27 1 243 307 262 325 5.70e-17 82.8
Msa0615070 AT2G37260.2 40.566 106 55 4 223 324 56 157 2.38e-14 74.7
Msa0615070 AT1G30650.1 53.968 63 29 0 253 315 222 284 8.81e-17 82.8
Msa0615070 AT2G34830.1 52.239 67 32 0 249 315 216 282 1.14e-16 82.4
Msa0615070 AT2G37260.1 56.923 65 27 1 243 307 344 407 1.14e-16 82.4
Msa0615070 AT2G37260.1 42.857 98 45 4 230 318 143 238 5.28e-14 74.3
Msa0615070 AT2G34830.2 52.239 67 32 0 249 315 225 291 1.45e-16 82.4
Msa0615070 AT4G01250.1 48.571 70 36 0 248 317 128 197 1.77e-16 80.5
Msa0615070 AT2G44745.1 45.946 74 39 1 232 305 129 201 1.98e-16 78.6
Msa0615070 AT4G39410.1 47.297 74 38 1 232 305 207 279 2.48e-16 80.1
Msa0615070 AT5G52830.1 45.783 83 42 1 239 318 153 235 9.21e-16 79.0
Msa0615070 AT2G21900.1 45.455 66 35 1 243 308 104 168 1.72e-15 75.5
Msa0615070 AT4G23550.1 40.860 93 54 1 231 323 124 215 2.32e-15 77.4
Msa0615070 AT4G31800.3 56.897 58 20 2 233 285 156 213 2.40e-14 73.2
Msa0615070 AT5G43290.1 55.172 58 25 1 248 305 114 170 1.15e-13 71.6
Msa0615070 AT5G45050.2 47.059 68 36 0 248 315 1152 1219 2.01e-13 73.6
Msa0615070 AT2G46130.2 48.611 72 32 2 235 306 17 83 2.16e-13 66.6
Msa0615070 AT5G45050.1 47.059 68 36 0 248 315 1180 1247 2.27e-13 73.6
Msa0615070 AT5G45050.4 46.377 69 37 0 248 316 1041 1109 2.40e-13 73.6
Msa0615070 AT1G69310.3 45.946 74 35 2 232 305 131 199 3.30e-13 70.5
Msa0615070 AT5G24110.1 43.836 73 38 2 233 303 99 170 1.25e-11 65.9
Msa0615070 AT5G45260.1 43.590 78 42 1 248 323 1208 1285 3.95e-11 66.2
Msa0615070 AT2G40740.1 46.667 75 35 2 248 317 173 247 8.81e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGTTCATTATTATTAT+TGG 0.182204 4_2:-64380614 None:intergenic
AATCCTAAAATTTCAGATTA+TGG 0.198583 4_2:+64380466 Msa0615070:CDS
ATTATTAGTGTAAGGATTAA+AGG 0.199622 4_2:-64380506 None:intergenic
ATATTTGAAGATTGGTTTAA+TGG 0.231617 4_2:-64380541 None:intergenic
AGCGGCTTCATTTATGTTAC+TGG 0.242571 4_2:+64380435 Msa0615070:CDS
GAAACCCTAGCCTTTCTATT+AGG 0.250513 4_2:-64379850 None:intergenic
ACTTTCCATCTCCATTTCTA+AGG 0.281935 4_2:-64379248 None:intergenic
ATATATACTTGTTTCCTAAC+TGG 0.294382 4_2:-64380099 None:intergenic
AGTATAAGTGAGAGTGATTT+GGG 0.310766 4_2:+64379664 Msa0615070:CDS
GGATGTCAATGGAGAAAATA+TGG 0.317894 4_2:+64380009 Msa0615070:CDS
AGGTTGATCAGTTGAATTAT+TGG 0.319022 4_2:-64380674 None:intergenic
TGCTTCTAATATTTGAAGAT+TGG 0.335707 4_2:-64380549 None:intergenic
TATTTGAAGATTGGTTTAAT+GGG 0.337890 4_2:-64380540 None:intergenic
GTAATATTGTTTGGTGGTAA+TGG 0.353117 4_2:-64379631 None:intergenic
AATTCCTTGGGATGGATCAT+TGG 0.353833 4_2:-64380578 None:intergenic
TGGATATTCATGATAGGGTT+TGG 0.367522 4_2:+64380791 Msa0615070:CDS
ATTCCTTGGGATGGATCATT+GGG 0.374431 4_2:-64380577 None:intergenic
ATCTCATGAAATGATCTTGA+TGG 0.384052 4_2:-64379577 None:intergenic
TAGTATAAGTGAGAGTGATT+TGG 0.391243 4_2:+64379663 Msa0615070:CDS
TTGCATCAGATCCTAAGTTT+AGG 0.396218 4_2:+64380854 Msa0615070:CDS
TGTAAGGATTAAAGGATTGT+TGG 0.404802 4_2:-64380498 None:intergenic
ATCAGTTGAATTATTGGAGC+TGG 0.405735 4_2:-64380668 None:intergenic
TCATCATCAGTAATATTGTT+TGG 0.412086 4_2:-64379640 None:intergenic
GCCATTGCAGTTGCACCAAC+AGG 0.427583 4_2:-64380397 None:intergenic
ACAGTTAAGTGCCTTAGAAA+TGG 0.427630 4_2:+64379237 Msa0615070:intron
GTAAGGATTAAAGGATTGTT+GGG 0.431662 4_2:-64380497 None:intergenic
TTGCTCCAGGCTGTCCAGTT+AGG 0.435647 4_2:+64380085 Msa0615070:CDS
CACCACTGGATATTCATGAT+AGG 0.437418 4_2:+64380785 Msa0615070:CDS
GTGATTTGGGTTTGTCATTG+AGG 0.445503 4_2:+64379677 Msa0615070:CDS
TGAAAGCTATTATTAGTGTA+AGG 0.448252 4_2:-64380514 None:intergenic
TGAATATCCAGTGGTGCTCT+AGG 0.459507 4_2:-64380778 None:intergenic
CGATAGTAGGCACGTGGACA+TGG 0.470350 4_2:-64380054 None:intergenic
ATCTTCTATTTCACCAGCTG+TGG 0.470676 4_2:-64378758 None:intergenic
TGATGGTCCTTCACCACTTG+TGG 0.487925 4_2:-64379560 None:intergenic
ACCCTAGCCTTTCTATTAGG+AGG 0.495222 4_2:-64379847 None:intergenic
AGACGACACGAAAATAAAAC+AGG 0.495687 4_2:+64378813 Msa0615070:CDS
CCCTCCTAATAGAAAGGCTA+GGG 0.503705 4_2:+64379846 Msa0615070:CDS
AGAAAATAATAATAAAAGAA+AGG 0.505035 4_2:+64379360 Msa0615070:CDS
TGTTTCCTAACTGGACAGCC+TGG 0.509897 4_2:-64380090 None:intergenic
ATACTAATTACAACATATGA+AGG 0.514191 4_2:+64380355 Msa0615070:CDS
TGCTAGTACTACTCTGCTGT+TGG 0.516325 4_2:-64380723 None:intergenic
ACCACTGGATATTCATGATA+GGG 0.516884 4_2:+64380786 Msa0615070:CDS
TATGGACAGAAAATAGCAAA+AGG 0.518587 4_2:+64380027 Msa0615070:CDS
TGTGAAAGAGAATGATGAGA+AGG 0.524014 4_2:+64378720 Msa0615070:CDS
CCCTAGCCTTTCTATTAGGA+GGG 0.524327 4_2:-64379846 None:intergenic
GATACTGAGGGAAATAAAGA+AGG 0.534250 4_2:+64379727 Msa0615070:CDS
TCATAACCCTAGAGCACCAC+TGG 0.541348 4_2:+64380771 Msa0615070:CDS
GCAGTTGCACCAACAGGTAG+TGG 0.543336 4_2:-64380391 None:intergenic
TTATTCCCCTCCTAATAGAA+AGG 0.546213 4_2:+64379840 Msa0615070:CDS
GCAACAGCAAGCCTAAACTT+AGG 0.549893 4_2:-64380865 None:intergenic
GACAATAATGCAGCCACAAG+TGG 0.553171 4_2:+64379547 Msa0615070:CDS
AGATGAATGATGGATGTCAA+TGG 0.556326 4_2:+64379998 Msa0615070:intron
AGCAACAGTACAACGATAGT+AGG 0.557840 4_2:-64380067 None:intergenic
AGTGCAGAATAAAATGCAAA+GGG 0.560508 4_2:+64379780 Msa0615070:CDS
CCCCTCCTAATAGAAAGGCT+AGG 0.560534 4_2:+64379845 Msa0615070:CDS
TATCGTTGTACTGTTGCTCC+AGG 0.560802 4_2:+64380072 Msa0615070:CDS
ACCTGTTGGTGCAACTGCAA+TGG 0.566391 4_2:+64380396 Msa0615070:CDS
AATGCAGCCACAAGTGGTGA+AGG 0.567792 4_2:+64379553 Msa0615070:CDS
TCATCAGTAATATTGTTTGG+TGG 0.568590 4_2:-64379637 None:intergenic
CCTAGCCTTTCTATTAGGAG+GGG 0.569534 4_2:-64379845 None:intergenic
GTTCATTATTATTATTGGTG+AGG 0.569658 4_2:-64380609 None:intergenic
GAATATCCAGTGGTGCTCTA+GGG 0.570071 4_2:-64380777 None:intergenic
GAAGTACATGAAGCCACAGC+TGG 0.577747 4_2:+64378745 Msa0615070:CDS
AAACAAAGCATTGAGGAAAG+TGG 0.581597 4_2:+64379282 Msa0615070:CDS
CAGTGCAGAATAAAATGCAA+AGG 0.585438 4_2:+64379779 Msa0615070:CDS
TAAAATGCAAAGGGTACATG+AGG 0.591092 4_2:+64379789 Msa0615070:CDS
CATAACCATCCACTACCTGT+TGG 0.598750 4_2:+64380382 Msa0615070:CDS
AAGTGCCTTAGAAATGGAGA+TGG 0.601274 4_2:+64379243 Msa0615070:CDS
GGAGCTGGAGCTACCTGCAG+TGG 0.606765 4_2:-64380653 None:intergenic
ATTCATGATAGGGTTTGGAA+AGG 0.609091 4_2:+64380796 Msa0615070:CDS
GGCTTCAACAGCTTCAGCAG+CGG 0.619613 4_2:+64380417 Msa0615070:CDS
AAGAAGAAAACAAAGCATTG+AGG 0.626884 4_2:+64379275 Msa0615070:CDS
CAAAGCATTGAGGAAAGTGG+TGG 0.629030 4_2:+64379285 Msa0615070:CDS
TTGCACCAACAGGTAGTGGA+TGG 0.629935 4_2:-64380387 None:intergenic
TTGAAGATTGGTTTAATGGG+TGG 0.629949 4_2:-64380537 None:intergenic
AACCCCAATGATCCATCCCA+AGG 0.633360 4_2:+64380574 Msa0615070:CDS
GCATGAGTAGTAGTAACACT+AGG 0.638304 4_2:-64379814 None:intergenic
AGCAACAGCACTACTACACA+TGG 0.652503 4_2:+64380919 Msa0615070:CDS
CACGTGTCAGAGAGATACTG+AGG 0.656234 4_2:+64379714 Msa0615070:CDS
TTCCTTGGGATGGATCATTG+GGG 0.675100 4_2:-64380576 None:intergenic
ACCCTATCATGAATATCCAG+TGG 0.684607 4_2:-64380787 None:intergenic
GTACAACGATAGTAGGCACG+TGG 0.706885 4_2:-64380060 None:intergenic
ACGTGTCAGAGAGATACTGA+GGG 0.717249 4_2:+64379715 Msa0615070:CDS
CCTGCAGTGGAAAATCGTCG+CGG 0.769202 4_2:-64380640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTATTATTATTTTCT+TGG - chr4_2:64379360-64379379 None:intergenic 10.0%
!! AGAAAATAATAATAAAAGAA+AGG + chr4_2:64379360-64379379 Msa0615070:CDS 10.0%
!! TTATTATATTAAACACAATA+GGG - chr4_2:64379474-64379493 None:intergenic 10.0%
!! ATTATTATATTAAACACAAT+AGG - chr4_2:64379475-64379494 None:intergenic 10.0%
!!! CAACTATTATTAATTTTATT+TGG + chr4_2:64380133-64380152 Msa0615070:intron 10.0%
!!! TTCTTTTATTATTATTTTCT+TGG - chr4_2:64379360-64379379 None:intergenic 10.0%
!! AGAAAATAATAATAAAAGAA+AGG + chr4_2:64379360-64379379 Msa0615070:CDS 10.0%
!! TTATTATATTAAACACAATA+GGG - chr4_2:64379474-64379493 None:intergenic 10.0%
!! ATTATTATATTAAACACAAT+AGG - chr4_2:64379475-64379494 None:intergenic 10.0%
!!! CAACTATTATTAATTTTATT+TGG + chr4_2:64380133-64380152 Msa0615070:intron 10.0%
!! TAACTCTTGAAAATTAAAAT+AGG + chr4_2:64379164-64379183 Msa0615070:intron 15.0%
!! TGATTTCTTTATTAATTAAC+CGG + chr4_2:64380265-64380284 Msa0615070:intron 15.0%
!! ATATATTAATTCTTAAGATC+CGG - chr4_2:64380287-64380306 None:intergenic 15.0%
!! TAACTCTTGAAAATTAAAAT+AGG + chr4_2:64379164-64379183 Msa0615070:intron 15.0%
!! TGATTTCTTTATTAATTAAC+CGG + chr4_2:64380265-64380284 Msa0615070:intron 15.0%
!! ATATATTAATTCTTAAGATC+CGG - chr4_2:64380287-64380306 None:intergenic 15.0%
!! ATAAGCAACAATATCAATAT+TGG - chr4_2:64378892-64378911 None:intergenic 20.0%
!! TGAAAAATTTGTCTCATTAA+AGG - chr4_2:64378938-64378957 None:intergenic 20.0%
!! ATACTATTGAAGAGAAAAAA+TGG - chr4_2:64378976-64378995 None:intergenic 20.0%
!!! TAGATGAAGAGTATAATTAA+GGG - chr4_2:64379018-64379037 None:intergenic 20.0%
!!! TTAGATGAAGAGTATAATTA+AGG - chr4_2:64379019-64379038 None:intergenic 20.0%
!! GAAAATTAAAATAGGTATCT+AGG + chr4_2:64379172-64379191 Msa0615070:intron 20.0%
!! ATACTAATTACAACATATGA+AGG + chr4_2:64380355-64380374 Msa0615070:CDS 20.0%
!! AATCCTAAAATTTCAGATTA+TGG + chr4_2:64380466-64380485 Msa0615070:CDS 20.0%
!!! AAACCATAATCTGAAATTTT+AGG - chr4_2:64380472-64380491 None:intergenic 20.0%
!! ATTATTAGTGTAAGGATTAA+AGG - chr4_2:64380509-64380528 None:intergenic 20.0%
!!! TATTTGAAGATTGGTTTAAT+GGG - chr4_2:64380543-64380562 None:intergenic 20.0%
!!! ATATTTGAAGATTGGTTTAA+TGG - chr4_2:64380544-64380563 None:intergenic 20.0%
!! GTTGAGTTCATTATTATTAT+TGG - chr4_2:64380617-64380636 None:intergenic 20.0%
!! ATAAGCAACAATATCAATAT+TGG - chr4_2:64378892-64378911 None:intergenic 20.0%
!! TGAAAAATTTGTCTCATTAA+AGG - chr4_2:64378938-64378957 None:intergenic 20.0%
!! ATACTATTGAAGAGAAAAAA+TGG - chr4_2:64378976-64378995 None:intergenic 20.0%
!!! TAGATGAAGAGTATAATTAA+GGG - chr4_2:64379018-64379037 None:intergenic 20.0%
!!! TTAGATGAAGAGTATAATTA+AGG - chr4_2:64379019-64379038 None:intergenic 20.0%
!! GAAAATTAAAATAGGTATCT+AGG + chr4_2:64379172-64379191 Msa0615070:intron 20.0%
!! ATACTAATTACAACATATGA+AGG + chr4_2:64380355-64380374 Msa0615070:CDS 20.0%
!! AATCCTAAAATTTCAGATTA+TGG + chr4_2:64380466-64380485 Msa0615070:CDS 20.0%
!!! AAACCATAATCTGAAATTTT+AGG - chr4_2:64380472-64380491 None:intergenic 20.0%
!! ATTATTAGTGTAAGGATTAA+AGG - chr4_2:64380509-64380528 None:intergenic 20.0%
!!! TATTTGAAGATTGGTTTAAT+GGG - chr4_2:64380543-64380562 None:intergenic 20.0%
!!! ATATTTGAAGATTGGTTTAA+TGG - chr4_2:64380544-64380563 None:intergenic 20.0%
!! GTTGAGTTCATTATTATTAT+TGG - chr4_2:64380617-64380636 None:intergenic 20.0%
! TTAAATCTACTTGTCTTCAA+TGG - chr4_2:64378858-64378877 None:intergenic 25.0%
! TCTTCAATAGTATCTATGTT+TGG + chr4_2:64378983-64379002 Msa0615070:intron 25.0%
! CTTCAATAGTATCTATGTTT+GGG + chr4_2:64378984-64379003 Msa0615070:intron 25.0%
!! AGATGAAGAGTATAATTAAG+GGG - chr4_2:64379017-64379036 None:intergenic 25.0%
! TCATCATCAGTAATATTGTT+TGG - chr4_2:64379643-64379662 None:intergenic 25.0%
! GATGAAACTAATTATTCTCA+TGG + chr4_2:64379966-64379985 Msa0615070:intron 25.0%
!!! GTTTTTTGAAAGATGAATGA+TGG + chr4_2:64379988-64380007 Msa0615070:intron 25.0%
! ATATATACTTGTTTCCTAAC+TGG - chr4_2:64380102-64380121 None:intergenic 25.0%
!!! AATTTTATTTGGATCTTCTG+CGG + chr4_2:64380144-64380163 Msa0615070:intron 25.0%
! TGAAAGCTATTATTAGTGTA+AGG - chr4_2:64380517-64380536 None:intergenic 25.0%
! TGCTTCTAATATTTGAAGAT+TGG - chr4_2:64380552-64380571 None:intergenic 25.0%
! GTTCATTATTATTATTGGTG+AGG - chr4_2:64380612-64380631 None:intergenic 25.0%
! TTAAATCTACTTGTCTTCAA+TGG - chr4_2:64378858-64378877 None:intergenic 25.0%
! TCTTCAATAGTATCTATGTT+TGG + chr4_2:64378983-64379002 Msa0615070:intron 25.0%
! CTTCAATAGTATCTATGTTT+GGG + chr4_2:64378984-64379003 Msa0615070:intron 25.0%
!! AGATGAAGAGTATAATTAAG+GGG - chr4_2:64379017-64379036 None:intergenic 25.0%
! TCATCATCAGTAATATTGTT+TGG - chr4_2:64379643-64379662 None:intergenic 25.0%
! GATGAAACTAATTATTCTCA+TGG + chr4_2:64379966-64379985 Msa0615070:intron 25.0%
!!! GTTTTTTGAAAGATGAATGA+TGG + chr4_2:64379988-64380007 Msa0615070:intron 25.0%
! ATATATACTTGTTTCCTAAC+TGG - chr4_2:64380102-64380121 None:intergenic 25.0%
!!! AATTTTATTTGGATCTTCTG+CGG + chr4_2:64380144-64380163 Msa0615070:intron 25.0%
! TGAAAGCTATTATTAGTGTA+AGG - chr4_2:64380517-64380536 None:intergenic 25.0%
! TGCTTCTAATATTTGAAGAT+TGG - chr4_2:64380552-64380571 None:intergenic 25.0%
! GTTCATTATTATTATTGGTG+AGG - chr4_2:64380612-64380631 None:intergenic 25.0%
AGAAGAAGAATCCAAAAAGA+TGG + chr4_2:64378627-64378646 Msa0615070:CDS 30.0%
! GAGATCAATTTCCATCTTTT+TGG - chr4_2:64378641-64378660 None:intergenic 30.0%
!! AAGAAGAAAACAAAGCATTG+AGG + chr4_2:64379275-64379294 Msa0615070:CDS 30.0%
ATCTCATGAAATGATCTTGA+TGG - chr4_2:64379580-64379599 None:intergenic 30.0%
! GTAATATTGTTTGGTGGTAA+TGG - chr4_2:64379634-64379653 None:intergenic 30.0%
TCATCAGTAATATTGTTTGG+TGG - chr4_2:64379640-64379659 None:intergenic 30.0%
TAGTATAAGTGAGAGTGATT+TGG + chr4_2:64379663-64379682 Msa0615070:CDS 30.0%
AGTATAAGTGAGAGTGATTT+GGG + chr4_2:64379664-64379683 Msa0615070:CDS 30.0%
AGAAGGCAAAAAAGAACAAT+TGG + chr4_2:64379744-64379763 Msa0615070:CDS 30.0%
GAAGGCAAAAAAGAACAATT+GGG + chr4_2:64379745-64379764 Msa0615070:CDS 30.0%
AGTGCAGAATAAAATGCAAA+GGG + chr4_2:64379780-64379799 Msa0615070:CDS 30.0%
AAAGAACTTTAAACTCACTG+TGG - chr4_2:64379899-64379918 None:intergenic 30.0%
TATGGACAGAAAATAGCAAA+AGG + chr4_2:64380027-64380046 Msa0615070:CDS 30.0%
GTAAGGATTAAAGGATTGTT+GGG - chr4_2:64380500-64380519 None:intergenic 30.0%
TGTAAGGATTAAAGGATTGT+TGG - chr4_2:64380501-64380520 None:intergenic 30.0%
! AGGTTGATCAGTTGAATTAT+TGG - chr4_2:64380677-64380696 None:intergenic 30.0%
AGAAGAAGAATCCAAAAAGA+TGG + chr4_2:64378627-64378646 Msa0615070:CDS 30.0%
! GAGATCAATTTCCATCTTTT+TGG - chr4_2:64378641-64378660 None:intergenic 30.0%
!! AAGAAGAAAACAAAGCATTG+AGG + chr4_2:64379275-64379294 Msa0615070:CDS 30.0%
ATCTCATGAAATGATCTTGA+TGG - chr4_2:64379580-64379599 None:intergenic 30.0%
! GTAATATTGTTTGGTGGTAA+TGG - chr4_2:64379634-64379653 None:intergenic 30.0%
TCATCAGTAATATTGTTTGG+TGG - chr4_2:64379640-64379659 None:intergenic 30.0%
TAGTATAAGTGAGAGTGATT+TGG + chr4_2:64379663-64379682 Msa0615070:CDS 30.0%
AGTATAAGTGAGAGTGATTT+GGG + chr4_2:64379664-64379683 Msa0615070:CDS 30.0%
AGAAGGCAAAAAAGAACAAT+TGG + chr4_2:64379744-64379763 Msa0615070:CDS 30.0%
GAAGGCAAAAAAGAACAATT+GGG + chr4_2:64379745-64379764 Msa0615070:CDS 30.0%
AGTGCAGAATAAAATGCAAA+GGG + chr4_2:64379780-64379799 Msa0615070:CDS 30.0%
AAAGAACTTTAAACTCACTG+TGG - chr4_2:64379899-64379918 None:intergenic 30.0%
TATGGACAGAAAATAGCAAA+AGG + chr4_2:64380027-64380046 Msa0615070:CDS 30.0%
GTAAGGATTAAAGGATTGTT+GGG - chr4_2:64380500-64380519 None:intergenic 30.0%
TGTAAGGATTAAAGGATTGT+TGG - chr4_2:64380501-64380520 None:intergenic 30.0%
! AGGTTGATCAGTTGAATTAT+TGG - chr4_2:64380677-64380696 None:intergenic 30.0%
TGTGAAAGAGAATGATGAGA+AGG + chr4_2:64378720-64378739 Msa0615070:CDS 35.0%
AGACGACACGAAAATAAAAC+AGG + chr4_2:64378813-64378832 Msa0615070:CDS 35.0%
ACAGTTAAGTGCCTTAGAAA+TGG + chr4_2:64379237-64379256 Msa0615070:intron 35.0%
ACTTTCCATCTCCATTTCTA+AGG - chr4_2:64379251-64379270 None:intergenic 35.0%
!! AAACAAAGCATTGAGGAAAG+TGG + chr4_2:64379282-64379301 Msa0615070:CDS 35.0%
GATACTGAGGGAAATAAAGA+AGG + chr4_2:64379727-64379746 Msa0615070:CDS 35.0%
CAGTGCAGAATAAAATGCAA+AGG + chr4_2:64379779-64379798 Msa0615070:CDS 35.0%
! TAAAATGCAAAGGGTACATG+AGG + chr4_2:64379789-64379808 Msa0615070:CDS 35.0%
TTATTCCCCTCCTAATAGAA+AGG + chr4_2:64379840-64379859 Msa0615070:CDS 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr4_2:64379998-64380017 Msa0615070:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr4_2:64380009-64380028 Msa0615070:CDS 35.0%
ACTACTTTGCAACCAATACA+AGG - chr4_2:64380183-64380202 None:intergenic 35.0%
!! TGTATTGGTTGCAAAGTAGT+TGG + chr4_2:64380183-64380202 Msa0615070:intron 35.0%
!! TTGAAGATTGGTTTAATGGG+TGG - chr4_2:64380540-64380559 None:intergenic 35.0%
TCAAAAACAATTCCTTGGGA+TGG - chr4_2:64380589-64380608 None:intergenic 35.0%
GAGGTCAAAAACAATTCCTT+GGG - chr4_2:64380593-64380612 None:intergenic 35.0%
TGAGGTCAAAAACAATTCCT+TGG - chr4_2:64380594-64380613 None:intergenic 35.0%
ATCAGTTGAATTATTGGAGC+TGG - chr4_2:64380671-64380690 None:intergenic 35.0%
! TTTTGCATCCAAGAAAAACG+AGG - chr4_2:64380697-64380716 None:intergenic 35.0%
ACCACTGGATATTCATGATA+GGG + chr4_2:64380786-64380805 Msa0615070:CDS 35.0%
TGGATATTCATGATAGGGTT+TGG + chr4_2:64380791-64380810 Msa0615070:CDS 35.0%
ATTCATGATAGGGTTTGGAA+AGG + chr4_2:64380796-64380815 Msa0615070:CDS 35.0%
TTGCATCAGATCCTAAGTTT+AGG + chr4_2:64380854-64380873 Msa0615070:CDS 35.0%
TGTGAAAGAGAATGATGAGA+AGG + chr4_2:64378720-64378739 Msa0615070:CDS 35.0%
AGACGACACGAAAATAAAAC+AGG + chr4_2:64378813-64378832 Msa0615070:CDS 35.0%
ACAGTTAAGTGCCTTAGAAA+TGG + chr4_2:64379237-64379256 Msa0615070:intron 35.0%
ACTTTCCATCTCCATTTCTA+AGG - chr4_2:64379251-64379270 None:intergenic 35.0%
!! AAACAAAGCATTGAGGAAAG+TGG + chr4_2:64379282-64379301 Msa0615070:CDS 35.0%
GATACTGAGGGAAATAAAGA+AGG + chr4_2:64379727-64379746 Msa0615070:CDS 35.0%
CAGTGCAGAATAAAATGCAA+AGG + chr4_2:64379779-64379798 Msa0615070:CDS 35.0%
! TAAAATGCAAAGGGTACATG+AGG + chr4_2:64379789-64379808 Msa0615070:CDS 35.0%
TTATTCCCCTCCTAATAGAA+AGG + chr4_2:64379840-64379859 Msa0615070:CDS 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr4_2:64379998-64380017 Msa0615070:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr4_2:64380009-64380028 Msa0615070:CDS 35.0%
ACTACTTTGCAACCAATACA+AGG - chr4_2:64380183-64380202 None:intergenic 35.0%
!! TGTATTGGTTGCAAAGTAGT+TGG + chr4_2:64380183-64380202 Msa0615070:intron 35.0%
!! TTGAAGATTGGTTTAATGGG+TGG - chr4_2:64380540-64380559 None:intergenic 35.0%
TCAAAAACAATTCCTTGGGA+TGG - chr4_2:64380589-64380608 None:intergenic 35.0%
GAGGTCAAAAACAATTCCTT+GGG - chr4_2:64380593-64380612 None:intergenic 35.0%
TGAGGTCAAAAACAATTCCT+TGG - chr4_2:64380594-64380613 None:intergenic 35.0%
ATCAGTTGAATTATTGGAGC+TGG - chr4_2:64380671-64380690 None:intergenic 35.0%
! TTTTGCATCCAAGAAAAACG+AGG - chr4_2:64380697-64380716 None:intergenic 35.0%
ACCACTGGATATTCATGATA+GGG + chr4_2:64380786-64380805 Msa0615070:CDS 35.0%
TGGATATTCATGATAGGGTT+TGG + chr4_2:64380791-64380810 Msa0615070:CDS 35.0%
ATTCATGATAGGGTTTGGAA+AGG + chr4_2:64380796-64380815 Msa0615070:CDS 35.0%
TTGCATCAGATCCTAAGTTT+AGG + chr4_2:64380854-64380873 Msa0615070:CDS 35.0%
ATCTTCTATTTCACCAGCTG+TGG - chr4_2:64378761-64378780 None:intergenic 40.0%
AAGTGCCTTAGAAATGGAGA+TGG + chr4_2:64379243-64379262 Msa0615070:CDS 40.0%
! GTGATTTGGGTTTGTCATTG+AGG + chr4_2:64379677-64379696 Msa0615070:CDS 40.0%
GCATGAGTAGTAGTAACACT+AGG - chr4_2:64379817-64379836 None:intergenic 40.0%
! GAAACCCTAGCCTTTCTATT+AGG - chr4_2:64379853-64379872 None:intergenic 40.0%
AGCAACAGTACAACGATAGT+AGG - chr4_2:64380070-64380089 None:intergenic 40.0%
TTTATTTGGATCTTCTGCGG+TGG + chr4_2:64380147-64380166 Msa0615070:intron 40.0%
GACTGCATAGTTGTTAGGTT+AGG - chr4_2:64380230-64380249 None:intergenic 40.0%
TGAGTGACTGCATAGTTGTT+AGG - chr4_2:64380235-64380254 None:intergenic 40.0%
AGCGGCTTCATTTATGTTAC+TGG + chr4_2:64380435-64380454 Msa0615070:CDS 40.0%
ATTCCTTGGGATGGATCATT+GGG - chr4_2:64380580-64380599 None:intergenic 40.0%
AATTCCTTGGGATGGATCAT+TGG - chr4_2:64380581-64380600 None:intergenic 40.0%
!! CTGATCAACCTCGTTTTTCT+TGG + chr4_2:64380686-64380705 Msa0615070:CDS 40.0%
CACCACTGGATATTCATGAT+AGG + chr4_2:64380785-64380804 Msa0615070:CDS 40.0%
ACCCTATCATGAATATCCAG+TGG - chr4_2:64380790-64380809 None:intergenic 40.0%
ATCTTCTATTTCACCAGCTG+TGG - chr4_2:64378761-64378780 None:intergenic 40.0%
AAGTGCCTTAGAAATGGAGA+TGG + chr4_2:64379243-64379262 Msa0615070:CDS 40.0%
! GTGATTTGGGTTTGTCATTG+AGG + chr4_2:64379677-64379696 Msa0615070:CDS 40.0%
GCATGAGTAGTAGTAACACT+AGG - chr4_2:64379817-64379836 None:intergenic 40.0%
! GAAACCCTAGCCTTTCTATT+AGG - chr4_2:64379853-64379872 None:intergenic 40.0%
AGCAACAGTACAACGATAGT+AGG - chr4_2:64380070-64380089 None:intergenic 40.0%
TTTATTTGGATCTTCTGCGG+TGG + chr4_2:64380147-64380166 Msa0615070:intron 40.0%
GACTGCATAGTTGTTAGGTT+AGG - chr4_2:64380230-64380249 None:intergenic 40.0%
TGAGTGACTGCATAGTTGTT+AGG - chr4_2:64380235-64380254 None:intergenic 40.0%
AGCGGCTTCATTTATGTTAC+TGG + chr4_2:64380435-64380454 Msa0615070:CDS 40.0%
ATTCCTTGGGATGGATCATT+GGG - chr4_2:64380580-64380599 None:intergenic 40.0%
AATTCCTTGGGATGGATCAT+TGG - chr4_2:64380581-64380600 None:intergenic 40.0%
!! CTGATCAACCTCGTTTTTCT+TGG + chr4_2:64380686-64380705 Msa0615070:CDS 40.0%
CACCACTGGATATTCATGAT+AGG + chr4_2:64380785-64380804 Msa0615070:CDS 40.0%
ACCCTATCATGAATATCCAG+TGG - chr4_2:64380790-64380809 None:intergenic 40.0%
!! CAAAGCATTGAGGAAAGTGG+TGG + chr4_2:64379285-64379304 Msa0615070:CDS 45.0%
TGATAGAGATCTCACTCAGC+AGG + chr4_2:64379498-64379517 Msa0615070:intron 45.0%
GACAATAATGCAGCCACAAG+TGG + chr4_2:64379547-64379566 Msa0615070:CDS 45.0%
ACGTGTCAGAGAGATACTGA+GGG + chr4_2:64379715-64379734 Msa0615070:CDS 45.0%
! CCTAGCCTTTCTATTAGGAG+GGG - chr4_2:64379848-64379867 None:intergenic 45.0%
! CCCTAGCCTTTCTATTAGGA+GGG - chr4_2:64379849-64379868 None:intergenic 45.0%
CCCTCCTAATAGAAAGGCTA+GGG + chr4_2:64379846-64379865 Msa0615070:CDS 45.0%
! ACCCTAGCCTTTCTATTAGG+AGG - chr4_2:64379850-64379869 None:intergenic 45.0%
TATCGTTGTACTGTTGCTCC+AGG + chr4_2:64380072-64380091 Msa0615070:CDS 45.0%
GGTTGCAAAGTAGTTGGATC+AGG + chr4_2:64380189-64380208 Msa0615070:intron 45.0%
CATAACCATCCACTACCTGT+TGG + chr4_2:64380382-64380401 Msa0615070:CDS 45.0%
TTCCTTGGGATGGATCATTG+GGG - chr4_2:64380579-64380598 None:intergenic 45.0%
TGCTAGTACTACTCTGCTGT+TGG - chr4_2:64380726-64380745 None:intergenic 45.0%
GAATATCCAGTGGTGCTCTA+GGG - chr4_2:64380780-64380799 None:intergenic 45.0%
TGAATATCCAGTGGTGCTCT+AGG - chr4_2:64380781-64380800 None:intergenic 45.0%
GCAACAGCAAGCCTAAACTT+AGG - chr4_2:64380868-64380887 None:intergenic 45.0%
AGCAACAGCACTACTACACA+TGG + chr4_2:64380919-64380938 Msa0615070:CDS 45.0%
!! CAAAGCATTGAGGAAAGTGG+TGG + chr4_2:64379285-64379304 Msa0615070:CDS 45.0%
TGATAGAGATCTCACTCAGC+AGG + chr4_2:64379498-64379517 Msa0615070:intron 45.0%
GACAATAATGCAGCCACAAG+TGG + chr4_2:64379547-64379566 Msa0615070:CDS 45.0%
ACGTGTCAGAGAGATACTGA+GGG + chr4_2:64379715-64379734 Msa0615070:CDS 45.0%
! CCTAGCCTTTCTATTAGGAG+GGG - chr4_2:64379848-64379867 None:intergenic 45.0%
! CCCTAGCCTTTCTATTAGGA+GGG - chr4_2:64379849-64379868 None:intergenic 45.0%
CCCTCCTAATAGAAAGGCTA+GGG + chr4_2:64379846-64379865 Msa0615070:CDS 45.0%
! ACCCTAGCCTTTCTATTAGG+AGG - chr4_2:64379850-64379869 None:intergenic 45.0%
TATCGTTGTACTGTTGCTCC+AGG + chr4_2:64380072-64380091 Msa0615070:CDS 45.0%
GGTTGCAAAGTAGTTGGATC+AGG + chr4_2:64380189-64380208 Msa0615070:intron 45.0%
CATAACCATCCACTACCTGT+TGG + chr4_2:64380382-64380401 Msa0615070:CDS 45.0%
TTCCTTGGGATGGATCATTG+GGG - chr4_2:64380579-64380598 None:intergenic 45.0%
TGCTAGTACTACTCTGCTGT+TGG - chr4_2:64380726-64380745 None:intergenic 45.0%
GAATATCCAGTGGTGCTCTA+GGG - chr4_2:64380780-64380799 None:intergenic 45.0%
TGAATATCCAGTGGTGCTCT+AGG - chr4_2:64380781-64380800 None:intergenic 45.0%
GCAACAGCAAGCCTAAACTT+AGG - chr4_2:64380868-64380887 None:intergenic 45.0%
AGCAACAGCACTACTACACA+TGG + chr4_2:64380919-64380938 Msa0615070:CDS 45.0%
!!! TTTTTTAATTTGTTTAATAT+AGG + chr4_2:64380306-64380325 Msa0615070:intron 5.0%
!!! TTTTTTAATTTGTTTAATAT+AGG + chr4_2:64380306-64380325 Msa0615070:intron 5.0%
GAAGTACATGAAGCCACAGC+TGG + chr4_2:64378745-64378764 Msa0615070:CDS 50.0%
AATGCAGCCACAAGTGGTGA+AGG + chr4_2:64379553-64379572 Msa0615070:CDS 50.0%
TGATGGTCCTTCACCACTTG+TGG - chr4_2:64379563-64379582 None:intergenic 50.0%
CACGTGTCAGAGAGATACTG+AGG + chr4_2:64379714-64379733 Msa0615070:CDS 50.0%
CCCCTCCTAATAGAAAGGCT+AGG + chr4_2:64379845-64379864 Msa0615070:CDS 50.0%
GTACAACGATAGTAGGCACG+TGG - chr4_2:64380063-64380082 None:intergenic 50.0%
TGTTTCCTAACTGGACAGCC+TGG - chr4_2:64380093-64380112 None:intergenic 50.0%
!! TTGCACCAACAGGTAGTGGA+TGG - chr4_2:64380390-64380409 None:intergenic 50.0%
ACCTGTTGGTGCAACTGCAA+TGG + chr4_2:64380396-64380415 Msa0615070:CDS 50.0%
AACCCCAATGATCCATCCCA+AGG + chr4_2:64380574-64380593 Msa0615070:CDS 50.0%
! TCATAACCCTAGAGCACCAC+TGG + chr4_2:64380771-64380790 Msa0615070:CDS 50.0%
GAAGTACATGAAGCCACAGC+TGG + chr4_2:64378745-64378764 Msa0615070:CDS 50.0%
AATGCAGCCACAAGTGGTGA+AGG + chr4_2:64379553-64379572 Msa0615070:CDS 50.0%
TGATGGTCCTTCACCACTTG+TGG - chr4_2:64379563-64379582 None:intergenic 50.0%
CACGTGTCAGAGAGATACTG+AGG + chr4_2:64379714-64379733 Msa0615070:CDS 50.0%
CCCCTCCTAATAGAAAGGCT+AGG + chr4_2:64379845-64379864 Msa0615070:CDS 50.0%
GTACAACGATAGTAGGCACG+TGG - chr4_2:64380063-64380082 None:intergenic 50.0%
TGTTTCCTAACTGGACAGCC+TGG - chr4_2:64380093-64380112 None:intergenic 50.0%
!! TTGCACCAACAGGTAGTGGA+TGG - chr4_2:64380390-64380409 None:intergenic 50.0%
ACCTGTTGGTGCAACTGCAA+TGG + chr4_2:64380396-64380415 Msa0615070:CDS 50.0%
AACCCCAATGATCCATCCCA+AGG + chr4_2:64380574-64380593 Msa0615070:CDS 50.0%
! TCATAACCCTAGAGCACCAC+TGG + chr4_2:64380771-64380790 Msa0615070:CDS 50.0%
CGATAGTAGGCACGTGGACA+TGG - chr4_2:64380057-64380076 None:intergenic 55.0%
TTGCTCCAGGCTGTCCAGTT+AGG + chr4_2:64380085-64380104 Msa0615070:CDS 55.0%
GCAGTTGCACCAACAGGTAG+TGG - chr4_2:64380394-64380413 None:intergenic 55.0%
GCCATTGCAGTTGCACCAAC+AGG - chr4_2:64380400-64380419 None:intergenic 55.0%
GGCTTCAACAGCTTCAGCAG+CGG + chr4_2:64380417-64380436 Msa0615070:CDS 55.0%
CCTGCAGTGGAAAATCGTCG+CGG - chr4_2:64380643-64380662 None:intergenic 55.0%
CGATAGTAGGCACGTGGACA+TGG - chr4_2:64380057-64380076 None:intergenic 55.0%
TTGCTCCAGGCTGTCCAGTT+AGG + chr4_2:64380085-64380104 Msa0615070:CDS 55.0%
GCAGTTGCACCAACAGGTAG+TGG - chr4_2:64380394-64380413 None:intergenic 55.0%
GCCATTGCAGTTGCACCAAC+AGG - chr4_2:64380400-64380419 None:intergenic 55.0%
GGCTTCAACAGCTTCAGCAG+CGG + chr4_2:64380417-64380436 Msa0615070:CDS 55.0%
CCTGCAGTGGAAAATCGTCG+CGG - chr4_2:64380643-64380662 None:intergenic 55.0%
TTGGATCTTCTGCGGTGGCG+CGG + chr4_2:64380152-64380171 Msa0615070:intron 60.0%
! CCGCGACGATTTTCCACTGC+AGG + chr4_2:64380640-64380659 Msa0615070:CDS 60.0%
TTGGATCTTCTGCGGTGGCG+CGG + chr4_2:64380152-64380171 Msa0615070:intron 60.0%
! CCGCGACGATTTTCCACTGC+AGG + chr4_2:64380640-64380659 Msa0615070:CDS 60.0%
GGCGCGGCTGCACCTTGTAT+TGG + chr4_2:64380168-64380187 Msa0615070:intron 65.0%
GGAGCTGGAGCTACCTGCAG+TGG - chr4_2:64380656-64380675 None:intergenic 65.0%
GGCGCGGCTGCACCTTGTAT+TGG + chr4_2:64380168-64380187 Msa0615070:intron 65.0%
GGAGCTGGAGCTACCTGCAG+TGG - chr4_2:64380656-64380675 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 64378619 64380954 64378619 ID=Msa0615070;Name=Msa0615070
chr4_2 mRNA 64378619 64380954 64378619 ID=Msa0615070-mRNA-1;Parent=Msa0615070;Name=Msa0615070-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0.25|0|1|1|1|5|0|492
chr4_2 exon 64378619 64378834 64378619 ID=Msa0615070-mRNA-1:exon:18035;Parent=Msa0615070-mRNA-1
chr4_2 exon 64379241 64379381 64379241 ID=Msa0615070-mRNA-1:exon:18036;Parent=Msa0615070-mRNA-1
chr4_2 exon 64379520 64379900 64379520 ID=Msa0615070-mRNA-1:exon:18037;Parent=Msa0615070-mRNA-1
chr4_2 exon 64380000 64380113 64380000 ID=Msa0615070-mRNA-1:exon:18038;Parent=Msa0615070-mRNA-1
chr4_2 exon 64380328 64380954 64380328 ID=Msa0615070-mRNA-1:exon:18039;Parent=Msa0615070-mRNA-1
chr4_2 CDS 64378619 64378834 64378619 ID=Msa0615070-mRNA-1:cds;Parent=Msa0615070-mRNA-1
chr4_2 CDS 64379241 64379381 64379241 ID=Msa0615070-mRNA-1:cds;Parent=Msa0615070-mRNA-1
chr4_2 CDS 64379520 64379900 64379520 ID=Msa0615070-mRNA-1:cds;Parent=Msa0615070-mRNA-1
chr4_2 CDS 64380000 64380113 64380000 ID=Msa0615070-mRNA-1:cds;Parent=Msa0615070-mRNA-1
chr4_2 CDS 64380328 64380954 64380328 ID=Msa0615070-mRNA-1:cds;Parent=Msa0615070-mRNA-1
Gene Sequence

>Msa0615070

ATGGGTAGAGAAGAAGAATCCAAAAAGATGGAAATTGATCTCTCTTTGAAGATAGATAGTGATGATGAGCGAAATGAAGAAGAAGAAGTAGATCATGAGCTTGTGAAAGAGAATGATGAGAAGGAAGAAGTACATGAAGCCACAGCTGGTGAAATAGAAGATGATGATGCTTCAGTTATACAACTATCTTTGCAAGACGACACGAAAATAAAACAGTTAAGTGCCTTAGAAATGGAGATGGAAAGTATGAAAGAAGAAAACAAAGCATTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAACAAAATTTTCAGTCATCCAAGAAAATAATAATAAAAGAAAGGATCGTCAACTTTCTCTCTCACTACAAGACAATAATGCAGCCACAAGTGGTGAAGGACCATCAAGATCATTTCATGAGATCTTTAGTCAAAAAATTAAAAGATCTTCATCTCCATTACCACCAAACAATATTACTGATGATGATAGTATAAGTGAGAGTGATTTGGGTTTGTCATTGAGGATGCAGACAATAAACACGTGTCAGAGAGATACTGAGGGAAATAAAGAAGGCAAAAAAGAACAATTGGGAAGTTTTGAATCAGTGCAGAATAAAATGCAAAGGGTACATGAGGTGCCTAGTGTTACTACTACTCATGCTGCTTATTCCCCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAACTGCCACAATGAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGAAATCCATGTCCACGTGCCTACTATCGTTGTACTGTTGCTCCAGGCTGTCCAGTTAGGAAACAAGTGCAAAGATGTATAGATGACATGTCTATACTAATTACAACATATGAAGGAACACATAACCATCCACTACCTGTTGGTGCAACTGCAATGGCTTCAACAGCTTCAGCAGCGGCTTCATTTATGTTACTGGATTCAAGCAATCCTAAAATTTCAGATTATGGTTTCACAACCCAACAATCCTTTAATCCTTACACTAATAATAGCTTTCACCACCCATTAAACCAATCTTCAAATATTAGAAGCATAAACCCCAATGATCCATCCCAAGGAATTGTTTTTGACCTCACCAATAATAATAATGAACTCAACGAACCGCGACGATTTTCCACTGCAGGTAGCTCCAGCTCCAATAATTCAACTGATCAACCTCGTTTTTCTTGGATGCAAAACAAATACCAACAGCAGAGTAGTACTAGCAATGCTAATATTGCAATGAACAATTTTCATAACCCTAGAGCACCACTGGATATTCATGATAGGGTTTGGAAAGGATCAGAAGAAAATAATAACAACAATGTGTCTGCAATTGCATCAGATCCTAAGTTTAGGCTTGCTGTTGCAGCTGCAATTTCATCACTCATGAATAAAGAAAGCAACAGCACTACTACACATGGTAGCAACAATTGA
Protein sequence

>Msa0615070

MGREEESKKMEIDLSLKIDSDDERNEEEEVDHELVKENDEKEEVHEATAGEIEDDDASVIQLSLQDDTKIKQLSALEMEMESMKEENKALRKVVEQTMKDYYDLQTKFSVIQENNNKRKDRQLSLSLQDNNAATSGEGPSRSFHEIFSQKIKRSSSPLPPNNITDDDSISESDLGLSLRMQTINTCQRDTEGNKEGKKEQLGSFESVQNKMQRVHEVPSVTTTHAAYSPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPKISDYGFTTQQSFNPYTNNSFHHPLNQSSNIRSINPNDPSQGIVFDLTNNNNELNEPRRFSTAGSSSSNNSTDQPRFSWMQNKYQQQSSTSNANIAMNNFHNPRAPLDIHDRVWKGSEENNNNNVSAIASDPKFRLAVAAAISSLMNKESNSTTTHGSNN*