AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716980 MtrunA17_Chr5g0404721 97.885 331 7 0 1 331 1 331 0.0 666
Msa0716980 MtrunA17_Chr8g0372601 83.861 316 51 0 15 330 15 330 0.0 560
Msa0716980 MtrunA17_Chr1g0155611 61.589 302 115 1 30 330 46 347 4.45e-131 377
Msa0716980 MtrunA17_Chr4g0013171 53.681 326 138 5 7 330 7 321 3.35e-113 331
Msa0716980 MtrunA17_Chr7g0258811 50.307 326 156 3 7 330 50 371 4.30e-113 332
Msa0716980 MtrunA17_Chr5g0438021 50.459 327 148 4 6 330 11 325 5.68e-113 330
Msa0716980 MtrunA17_Chr5g0400331 53.746 307 135 3 30 330 26 331 1.47e-112 330
Msa0716980 MtrunA17_Chr2g0320031 50.464 323 146 2 8 330 11 319 1.64e-112 329
Msa0716980 MtrunA17_Chr2g0320061 50.464 323 145 2 8 330 11 318 9.00e-112 327
Msa0716980 MtrunA17_Chr3g0114451 53.395 324 141 3 7 330 5 318 3.67e-111 325
Msa0716980 MtrunA17_Chr2g0320071 49.691 324 153 3 7 330 4 317 5.20e-111 325
Msa0716980 MtrunA17_Chr2g0320051 51.475 305 141 1 26 330 21 318 1.02e-110 324
Msa0716980 MtrunA17_Chr2g0292251 52.131 305 145 1 27 330 25 329 1.57e-110 325
Msa0716980 MtrunA17_Chr2g0292181 51.803 305 146 1 27 330 35 339 8.23e-110 324
Msa0716980 MtrunA17_Chr2g0292111 52.459 305 144 1 27 330 26 330 2.05e-109 322
Msa0716980 MtrunA17_Chr2g0292241 51.961 306 146 1 27 331 26 331 4.55e-109 322
Msa0716980 MtrunA17_Chr2g0292091 51.307 306 146 2 28 330 20 325 4.06e-108 319
Msa0716980 MtrunA17_Chr1g0175561 47.590 332 165 3 1 330 2 326 1.90e-107 317
Msa0716980 MtrunA17_Chr2g0291751 50.318 314 150 2 18 330 22 330 2.50e-107 317
Msa0716980 MtrunA17_Chr3g0106921 51.316 304 137 4 30 330 25 320 4.42e-107 315
Msa0716980 MtrunA17_Chr3g0129051 48.615 325 154 4 8 330 9 322 5.63e-107 315
Msa0716980 MtrunA17_Chr2g0320101 49.383 324 154 3 7 330 4 317 7.79e-107 315
Msa0716980 MtrunA17_Chr2g0292101 50.980 306 147 2 28 330 21 326 8.37e-107 315
Msa0716980 MtrunA17_Chr2g0299691 52.787 305 138 2 30 330 56 358 1.15e-106 316
Msa0716980 MtrunA17_Chr2g0292211 51.148 305 148 1 27 330 37 341 1.23e-106 316
Msa0716980 MtrunA17_Chr4g0013181 54.849 299 125 4 34 330 63 353 2.40e-106 315
Msa0716980 MtrunA17_Chr2g0292151 50.492 305 150 1 27 330 26 330 1.07e-105 313
Msa0716980 MtrunA17_Chr2g0320091 48.916 323 153 5 9 330 7 318 6.49e-105 310
Msa0716980 MtrunA17_Chr4g0070951 49.850 333 160 3 1 330 1 329 8.19e-105 310
Msa0716980 MtrunA17_Chr4g0068621 50.662 302 145 2 30 330 38 336 1.41e-104 310
Msa0716980 MtrunA17_Chr5g0432441 50.909 330 142 6 8 330 10 326 1.47e-104 309
Msa0716980 MtrunA17_Chr4g0043391 46.547 333 163 3 1 330 4 324 2.86e-104 308
Msa0716980 MtrunA17_Chr7g0244461 49.508 305 146 2 26 330 16 312 3.32e-104 308
Msa0716980 MtrunA17_Chr3g0129061 49.538 325 146 4 8 330 14 322 4.19e-104 308
Msa0716980 MtrunA17_Chr5g0432351 52.459 305 133 5 30 330 25 321 3.86e-103 305
Msa0716980 MtrunA17_Chr5g0402571 50.154 325 153 4 7 330 10 326 3.99e-103 305
Msa0716980 MtrunA17_Chr4g0038171 45.946 333 165 3 1 330 1 321 7.34e-103 305
Msa0716980 MtrunA17_Chr2g0292271 47.368 323 163 2 9 330 14 330 2.14e-102 305
Msa0716980 MtrunA17_Chr3g0129041 49.691 324 146 4 9 330 14 322 3.33e-102 303
Msa0716980 MtrunA17_Chr5g0432341 52.131 305 134 5 30 330 25 321 6.13e-102 302
Msa0716980 MtrunA17_Chr4g0038161 47.385 325 155 4 9 330 9 320 6.62e-102 302
Msa0716980 MtrunA17_Chr4g0038151 48.534 307 148 3 27 330 22 321 8.78e-102 302
Msa0716980 MtrunA17_Chr5g0402581 48.923 325 157 4 7 330 10 326 7.37e-100 297
Msa0716980 MtrunA17_Chr7g0244451 46.847 333 152 4 2 330 5 316 9.67e-100 296
Msa0716980 MtrunA17_Chr7g0224371 50.166 301 133 4 34 330 35 322 1.65e-99 296
Msa0716980 MtrunA17_Chr5g0432331 51.148 305 137 5 30 330 56 352 2.96e-99 296
Msa0716980 MtrunA17_Chr2g0292261 50.000 298 148 1 34 330 33 330 3.30e-99 296
Msa0716980 MtrunA17_Chr4g0013191 49.508 305 141 5 30 330 45 340 3.68e-98 293
Msa0716980 MtrunA17_Chr2g0292291 46.319 326 166 3 14 330 7 332 6.85e-98 293
Msa0716980 MtrunA17_Chr3g0106901 47.840 324 152 3 7 330 17 323 6.26e-97 290
Msa0716980 MtrunA17_Chr4g0013201 47.351 302 149 3 30 330 46 338 1.59e-95 286
Msa0716980 MtrunA17_Chr4g0013721 48.344 302 152 3 30 331 100 397 2.47e-95 288
Msa0716980 MtrunA17_Chr5g0421411 48.227 282 142 3 53 330 4 285 7.55e-94 280
Msa0716980 MtrunA17_Chr4g0013821 46.512 301 157 3 30 330 28 324 1.51e-93 281
Msa0716980 MtrunA17_Chr2g0322861 46.246 333 168 6 1 331 64 387 6.55e-93 281
Msa0716980 MtrunA17_Chr3g0107881 44.753 324 166 5 11 330 10 324 8.02e-93 279
Msa0716980 MtrunA17_Chr1g0213061 44.582 323 167 4 10 330 9 321 2.39e-91 275
Msa0716980 MtrunA17_Chr4g0024121 47.682 302 155 3 30 330 27 326 9.96e-90 271
Msa0716980 MtrunA17_Chr2g0279041 45.946 333 158 7 7 330 6 325 4.60e-87 265
Msa0716980 MtrunA17_Chr3g0128061 47.157 299 156 2 34 331 30 327 1.23e-86 263
Msa0716980 MtrunA17_Chr7g0268501 44.785 326 172 5 5 330 3 320 2.16e-86 263
Msa0716980 MtrunA17_Chr7g0268521 44.785 326 172 5 5 330 3 320 2.16e-86 263
Msa0716980 MtrunA17_Chr5g0405991 43.030 330 171 6 1 330 4 316 9.20e-83 253
Msa0716980 MtrunA17_Chr4g0076211 44.781 297 154 5 35 330 46 333 1.01e-82 254
Msa0716980 MtrunA17_Chr1g0194151 45.847 301 158 3 34 330 34 333 2.92e-82 252
Msa0716980 MtrunA17_Chr1g0164891 45.847 301 158 5 34 330 93 392 1.03e-81 253
Msa0716980 MtrunA17_Chr2g0296621 45.425 306 156 7 26 330 46 341 4.20e-81 250
Msa0716980 MtrunA17_Chr8g0371381 44.482 299 155 6 34 330 30 319 5.63e-81 249
Msa0716980 MtrunA17_Chr1g0204011 41.846 325 176 7 7 330 10 322 3.07e-80 247
Msa0716980 MtrunA17_Chr1g0194271 44.481 308 159 4 34 330 34 340 1.33e-79 246
Msa0716980 MtrunA17_Chr4g0063671 41.493 335 176 7 1 330 1 320 1.22e-78 243
Msa0716980 MtrunA17_Chr6g0460711 43.098 297 162 5 34 330 25 314 2.07e-77 239
Msa0716980 MtrunA17_Chr7g0254231 41.447 304 167 5 28 331 20 312 2.90e-77 239
Msa0716980 MtrunA17_Chr6g0477071 41.528 301 164 6 30 330 54 342 3.19e-76 237
Msa0716980 MtrunA17_Chr5g0432401 42.345 307 126 5 27 329 26 285 4.16e-76 235
Msa0716980 MtrunA17_Chr1g0181511 42.857 301 160 5 34 330 31 323 5.98e-76 236
Msa0716980 MtrunA17_Chr1g0188431 39.938 323 182 6 8 330 17 327 9.89e-75 233
Msa0716980 MtrunA17_Chr1g0157051 40.798 326 181 6 1 326 1 314 1.68e-74 232
Msa0716980 MtrunA17_Chr8g0364291 40.741 324 185 4 10 331 7 325 4.37e-74 231
Msa0716980 MtrunA17_Chr7g0254201 42.088 297 164 6 34 330 24 312 5.74e-74 231
Msa0716980 MtrunA17_Chr7g0225221 42.715 302 166 4 30 330 25 320 1.74e-72 227
Msa0716980 MtrunA17_Chr5g0401431 39.877 326 189 5 8 329 6 328 6.73e-72 226
Msa0716980 MtrunA17_Chr1g0181431 41.000 300 167 4 34 330 31 323 2.70e-71 224
Msa0716980 MtrunA17_Chr4g0046131 39.104 335 188 6 7 326 9 342 3.35e-71 224
Msa0716980 MtrunA17_Chr1g0148021 40.729 329 185 5 5 330 7 328 1.04e-70 223
Msa0716980 MtrunA17_Chr1g0181481 41.000 300 167 4 34 330 31 323 1.60e-69 219
Msa0716980 MtrunA17_Chr6g0467121 37.941 340 184 9 2 330 40 363 1.71e-69 221
Msa0716980 MtrunA17_Chr4g0075241 37.195 328 201 4 4 330 4 327 1.91e-69 219
Msa0716980 MtrunA17_Chr6g0467161 36.556 331 190 6 8 330 18 336 1.91e-68 217
Msa0716980 MtrunA17_Chr4g0072091 39.867 301 172 4 34 330 28 323 3.02e-68 216
Msa0716980 MtrunA17_Chr2g0278671 42.532 308 162 9 30 330 24 323 3.59e-68 216
Msa0716980 MtrunA17_Chr6g0467251 39.697 330 184 7 5 331 12 329 5.27e-68 216
Msa0716980 MtrunA17_Chr2g0316791 37.464 347 178 8 18 329 63 405 1.86e-67 217
Msa0716980 MtrunA17_Chr2g0316481 37.101 345 182 7 18 329 63 405 1.98e-67 217
Msa0716980 MtrunA17_Chr1g0197411 36.697 327 199 5 7 330 9 330 2.65e-67 214
Msa0716980 MtrunA17_Chr3g0136751 41.667 300 166 4 34 330 29 322 1.14e-66 212
Msa0716980 MtrunA17_Chr2g0279061 47.126 261 128 5 74 330 12 266 1.20e-66 210
Msa0716980 MtrunA17_Chr2g0316831 37.391 345 181 8 18 329 99 441 2.06e-66 215
Msa0716980 MtrunA17_Chr4g0053871 40.123 324 183 6 6 326 5 320 4.68e-66 211
Msa0716980 MtrunA17_Chr2g0329641 37.092 337 193 9 5 330 7 335 2.55e-65 209
Msa0716980 MtrunA17_Chr2g0316191 35.838 346 186 7 18 329 63 406 3.95e-65 211
Msa0716980 MtrunA17_Chr4g0074851 36.923 325 192 5 8 326 7 324 1.83e-64 207
Msa0716980 MtrunA17_Chr6g0451571 35.474 327 199 6 7 330 17 334 1.27e-63 204
Msa0716980 MtrunA17_Chr3g0114461 51.282 195 88 1 136 330 5 192 7.50e-60 190
Msa0716980 MtrunA17_Chr2g0311251 35.976 328 175 7 34 329 15 339 1.47e-59 194
Msa0716980 MtrunA17_Chr2g0311241 33.161 386 181 8 18 329 47 429 3.09e-59 196
Msa0716980 MtrunA17_Chr5g0413051 36.246 309 189 5 28 330 71 377 2.87e-58 192
Msa0716980 MtrunA17_Chr2g0292281 45.238 210 102 3 123 330 18 216 3.87e-51 169
Msa0716980 MtrunA17_Chr2g0316811 39.076 238 126 4 18 237 37 273 1.51e-47 163
Msa0716980 MtrunA17_Chr3g0114491 61.468 109 42 0 30 138 18 126 2.34e-41 140
Msa0716980 MtrunA17_Chr4g0004591 29.747 316 161 4 34 329 81 355 1.41e-40 145
Msa0716980 MtrunA17_Chr2g0316141 31.488 289 145 8 76 331 11 279 2.26e-37 135
Msa0716980 MtrunA17_Chr2g0316181 31.488 289 145 8 76 331 11 279 2.26e-37 135
Msa0716980 MtrunA17_Chr1g0181501 35.751 193 114 4 141 330 4 189 6.02e-33 120
Msa0716980 MtrunA17_Chr5g0432321 48.387 124 56 2 151 274 17 132 3.44e-29 108
Msa0716980 MtrunA17_Chr3g0104101 41.135 141 79 3 194 330 9 149 7.16e-26 100
Msa0716980 MtrunA17_Chr1g0181491 45.794 107 56 2 34 140 16 120 4.71e-23 93.2
Msa0716980 MtrunA17_Chr6g0468731 61.972 71 23 2 69 139 22 88 2.88e-21 86.7
Msa0716980 MtrunA17_Chr4g0013811 53.333 75 35 0 140 214 5 79 1.13e-19 82.0
Msa0716980 MtrunA17_Chr7g0254181 40.541 111 58 2 91 196 15 122 5.24e-19 82.8
Msa0716980 MtrunA17_Chr5g0432361 42.056 107 55 3 224 329 8 108 7.31e-18 78.2
Msa0716980 MtrunA17_Chr3g0137751 28.137 263 122 8 61 311 105 312 7.08e-17 80.1
Msa0716980 MtrunA17_Chr7g0254171 47.297 74 38 1 75 148 3 75 5.57e-16 73.9
Msa0716980 MtrunA17_Chr7g0268491 50.667 75 35 2 256 330 25 97 7.23e-16 72.4
Msa0716980 MtrunA17_Chr1g0196191 55.385 65 28 1 72 136 27 90 3.48e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716980 AT5G66390.1 74.850 334 81 2 1 331 1 334 0.0 531
Msa0716980 AT4G36430.1 70.126 318 95 0 14 331 14 331 1.22e-170 477
Msa0716980 AT2G18150.1 68.278 331 99 1 7 331 7 337 3.17e-170 476
Msa0716980 AT2G18140.1 64.350 331 113 1 6 331 6 336 4.55e-158 446
Msa0716980 AT3G50990.1 64.110 326 112 1 11 331 17 342 1.34e-153 434
Msa0716980 AT1G44970.1 65.563 302 103 1 30 330 45 346 1.30e-140 402
Msa0716980 AT2G35380.1 53.571 308 134 3 30 330 30 335 6.22e-110 323
Msa0716980 AT5G06720.1 50.662 302 148 1 30 330 32 333 1.57e-109 322
Msa0716980 AT5G05340.1 49.511 307 145 3 26 330 26 324 1.18e-106 315
Msa0716980 AT4G08770.1 50.492 305 148 2 30 331 24 328 8.56e-106 313
Msa0716980 AT5G19890.1 51.553 322 147 4 13 331 13 328 2.30e-105 311
Msa0716980 AT4G08780.1 50.327 306 147 3 30 331 24 328 4.15e-105 311
Msa0716980 AT1G14550.1 48.148 324 155 3 8 330 10 321 1.51e-104 309
Msa0716980 AT1G49570.1 53.535 297 134 3 33 326 51 346 1.77e-103 308
Msa0716980 AT3G32980.1 49.836 305 150 2 30 331 31 335 1.91e-103 307
Msa0716980 AT3G49110.1 49.201 313 156 2 22 331 25 337 2.40e-103 307
Msa0716980 AT5G06730.1 47.351 302 158 1 30 330 33 334 1.09e-102 306
Msa0716980 AT2G38390.1 47.386 306 159 2 27 330 28 333 2.37e-101 302
Msa0716980 AT5G58400.1 45.872 327 160 5 7 330 13 325 3.76e-101 301
Msa0716980 AT4G16270.1 51.007 298 142 3 34 330 54 348 1.42e-100 300
Msa0716980 AT3G49120.1 49.508 305 151 2 30 331 32 336 5.53e-100 299
Msa0716980 AT2G38380.1 47.855 303 156 2 30 330 31 333 4.16e-97 291
Msa0716980 AT2G22420.1 48.173 301 152 3 30 330 23 319 5.85e-96 288
Msa0716980 AT1G14540.1 44.444 324 165 2 7 330 7 315 2.31e-95 286
Msa0716980 AT5G58390.1 46.201 329 160 5 5 330 2 316 6.09e-95 285
Msa0716980 AT1G68850.1 43.939 330 179 4 7 330 6 335 3.32e-94 283
Msa0716980 AT3G03670.1 43.692 325 175 3 6 330 5 321 3.63e-90 273
Msa0716980 AT5G19880.1 41.896 327 180 4 8 330 9 329 1.52e-86 263
Msa0716980 AT4G11290.1 45.819 299 159 3 34 330 29 326 6.18e-86 262
Msa0716980 AT1G05260.1 42.857 329 183 4 5 331 1 326 6.75e-86 262
Msa0716980 AT5G15180.1 46.128 297 157 3 34 330 36 329 3.57e-85 260
Msa0716980 AT5G64120.1 43.434 297 161 5 34 330 39 328 1.12e-83 256
Msa0716980 AT3G21770.1 44.737 304 159 4 27 326 26 324 2.44e-82 253
Msa0716980 AT1G71695.1 42.773 339 172 9 5 330 10 339 1.66e-81 252
Msa0716980 AT5G17820.1 40.303 330 180 6 1 330 1 313 6.46e-81 249
Msa0716980 AT5G42180.1 44.667 300 160 4 30 329 23 316 6.18e-80 246
Msa0716980 AT5G17820.2 40.303 330 180 6 1 330 54 366 6.23e-80 248
Msa0716980 AT2G35380.2 50.201 249 115 3 89 330 1 247 3.10e-79 242
Msa0716980 AT3G01190.1 44.237 321 168 5 10 330 12 321 4.86e-79 244
Msa0716980 AT1G05240.1 43.771 297 158 5 34 326 30 321 5.14e-79 244
Msa0716980 AT1G05250.1 43.771 297 158 5 34 326 30 321 5.14e-79 244
Msa0716980 AT2G39040.1 44.127 315 166 6 23 330 39 350 3.67e-78 243
Msa0716980 AT2G41480.1 44.040 302 158 5 34 330 33 328 4.96e-78 242
Msa0716980 AT5G51890.1 40.244 328 178 8 7 330 9 322 9.24e-77 238
Msa0716980 AT5G39580.1 43.624 298 160 6 34 330 29 319 2.16e-76 237
Msa0716980 AT1G30870.1 44.984 309 158 6 26 331 47 346 8.92e-76 237
Msa0716980 AT5G64100.1 44.482 299 156 5 34 330 41 331 1.56e-74 233
Msa0716980 AT5G47000.1 38.532 327 191 5 7 331 13 331 1.39e-72 228
Msa0716980 AT4G26010.1 41.195 318 172 7 15 331 7 310 3.56e-72 226
Msa0716980 AT4G26010.2 41.195 318 172 7 15 331 35 338 6.25e-72 226
Msa0716980 AT2G37130.1 40.909 308 171 5 27 330 27 327 1.37e-71 225
Msa0716980 AT4G33870.1 36.716 335 175 4 29 328 67 399 1.56e-71 228
Msa0716980 AT2G37130.2 41.196 301 166 5 34 330 3 296 2.44e-71 224
Msa0716980 AT5G64110.1 43.000 300 161 5 34 330 38 330 8.17e-71 223
Msa0716980 AT4G37520.1 39.474 304 180 3 30 330 27 329 1.12e-70 223
Msa0716980 AT4G37530.1 40.132 304 178 3 30 330 27 329 3.56e-70 222
Msa0716980 AT5G14130.1 38.580 324 186 5 8 330 19 330 1.04e-69 221
Msa0716980 AT3G28200.1 39.934 303 173 4 30 330 21 316 1.99e-69 219
Msa0716980 AT4G33420.1 39.514 329 181 8 2 330 15 325 2.40e-69 219
Msa0716980 AT2G18980.1 38.438 333 192 5 1 330 1 323 2.75e-69 219
Msa0716980 AT1G24110.1 40.000 305 177 5 30 331 22 323 3.21e-69 219
Msa0716980 AT5G14130.2 38.272 324 187 5 8 330 60 371 5.10e-69 220
Msa0716980 AT4G37520.2 39.145 304 178 4 30 330 27 326 7.05e-69 218
Msa0716980 AT4G33420.2 39.514 329 181 8 2 330 62 372 1.16e-68 219
Msa0716980 AT4G30170.1 39.032 310 177 6 26 330 23 325 4.01e-68 216
Msa0716980 AT4G31760.1 40.134 299 172 4 34 330 33 326 1.01e-67 215
Msa0716980 AT1G77100.1 40.594 303 163 8 34 330 28 319 1.23e-67 215
Msa0716980 AT2G24800.1 41.667 300 167 5 34 330 35 329 1.89e-67 214
Msa0716980 AT4G25980.1 38.411 302 176 5 34 330 30 326 1.17e-66 213
Msa0716980 AT4G17690.1 38.614 303 178 4 30 330 26 322 1.70e-66 212
Msa0716980 AT5G40150.1 38.436 307 181 4 26 330 28 328 1.92e-66 212
Msa0716980 AT1G34510.1 39.432 317 177 7 16 331 8 310 2.08e-66 211
Msa0716980 AT2G34060.1 37.764 331 195 6 7 327 14 343 3.10e-66 212
Msa0716980 AT4G21960.1 39.333 300 172 4 34 330 35 327 1.75e-65 209
Msa0716980 AT5G22410.1 37.798 336 189 11 2 331 5 326 2.80e-65 209
Msa0716980 AT5G67400.1 39.145 304 181 3 30 330 27 329 3.35e-64 206
Msa0716980 AT3G49960.1 38.333 300 181 3 34 330 31 329 1.14e-63 205
Msa0716980 AT4G37530.2 41.365 249 143 2 34 279 31 279 4.96e-60 194
Msa0716980 AT2G43480.1 38.111 307 177 7 29 330 37 335 6.33e-60 196
Msa0716980 AT3G17070.1 35.398 339 183 10 13 330 16 339 3.23e-58 191
Msa0716980 AT5G24070.1 33.923 339 204 7 5 330 4 335 3.66e-58 191
Msa0716980 AT4G25980.2 45.732 164 85 3 34 197 75 234 5.17e-44 152
Msa0716980 AT5G39580.2 46.784 171 86 3 34 204 29 194 3.13e-43 149
Msa0716980 AT3G17070.2 33.333 288 162 9 58 330 4 276 2.06e-41 145
Msa0716980 AT2G24800.2 46.626 163 83 1 34 196 35 193 1.68e-40 142
Msa0716980 AT3G42570.1 36.111 144 78 4 55 195 15 147 2.37e-15 72.8
Msa0716980 AT4G32320.1 27.273 297 141 10 29 311 86 321 3.76e-15 75.5
Msa0716980 AT4G08390.2 25.641 273 140 11 64 312 127 360 9.97e-12 65.9
Msa0716980 AT4G08390.5 25.641 273 140 11 64 312 127 360 9.97e-12 65.9
Msa0716980 AT4G08390.1 25.641 273 140 11 64 312 127 360 9.97e-12 65.9
Msa0716980 AT4G08390.3 25.641 273 140 11 64 312 126 359 1.02e-11 65.9

Find 79 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCCCTTGATCCTGTTAA+AGG 0.173311 5_1:+10558181 None:intergenic
CTTGACAATCTCTTCAACTT+TGG 0.243603 5_1:+10559608 None:intergenic
AGTCTAGGACAAACAGATTT+TGG 0.271787 5_1:+10558395 None:intergenic
CAACTACTACAAGAACTTAT+TGG 0.285025 5_1:-10558347 Msa0716980:CDS
TAATAAGATGTTTCAAGAAT+TGG 0.295395 5_1:-10557956 Msa0716980:three_prime_UTR
CTGACTTGCCATTCCCAGTT+TGG 0.295882 5_1:+10558482 None:intergenic
ATGGTTTGGAATGTATTGTT+AGG 0.303652 5_1:+10558855 None:intergenic
GTTGATCTAGTTGCTCTATC+TGG 0.307619 5_1:-10558798 Msa0716980:intron
GGAAACATTACTCCTTTAAC+AGG 0.313337 5_1:-10558193 Msa0716980:CDS
CTTAACTAAATTCAAGCTTA+AGG 0.333245 5_1:-10558832 Msa0716980:CDS
TGAATTTAGTTAAGATGGTT+TGG 0.336203 5_1:+10558841 None:intergenic
TTGACAATCTCTTCAACTTT+GGG 0.338379 5_1:+10559609 None:intergenic
TGTGTCCTGAGTATAAAATT+TGG 0.343182 5_1:-10558021 Msa0716980:three_prime_UTR
TTAACTAAATTCAAGCTTAA+GGG 0.348519 5_1:-10558831 Msa0716980:CDS
CAAATCCTCTAGCTGAATTA+CGG 0.358640 5_1:+10559154 None:intergenic
CAACGACTCTACAACCAAAC+TGG 0.359173 5_1:-10558496 Msa0716980:CDS
GAGTATAAAATTTGGGCTTT+TGG 0.362183 5_1:-10558013 Msa0716980:three_prime_UTR
CGCACTCGGTGCCCAAGATC+TGG 0.377599 5_1:-10558424 Msa0716980:CDS
ACCAAGTTGGGATGTACCTT+TGG 0.377739 5_1:-10558934 Msa0716980:CDS
CCTCTAGCTGAATTACGGTT+TGG 0.384144 5_1:+10559159 None:intergenic
GTGTCCTGAGTATAAAATTT+GGG 0.384265 5_1:-10558020 Msa0716980:three_prime_UTR
AAGCTTGAATTTAGTTAAGA+TGG 0.387881 5_1:+10558836 None:intergenic
GCAATTGAGCTGCATAGTTT+TGG 0.388025 5_1:+10558446 None:intergenic
TATCAGCACAAGAGACTGTC+TGG 0.410605 5_1:+10559088 None:intergenic
TTTGGTCTCCACCAGATCTT+GGG 0.428573 5_1:+10558413 None:intergenic
TCAGACTGGTGGACCAAGTT+GGG 0.428730 5_1:-10558946 Msa0716980:intron
TGCCAAGTCCATGGTTAAGA+TGG 0.429935 5_1:-10558215 Msa0716980:CDS
TGGTTTGGAATGTATTGTTA+GGG 0.440392 5_1:+10558856 None:intergenic
TCCCATCTTAACCATGGACT+TGG 0.441177 5_1:+10558213 None:intergenic
CCAAGTTGGGATGTACCTTT+GGG 0.443433 5_1:-10558933 Msa0716980:CDS
ACAGAATTTCATCAGAACTT+AGG 0.456756 5_1:+10558311 None:intergenic
CAGCAAGGAAGCAGCCATGC+GGG 0.463288 5_1:+10559554 None:intergenic
GTTATAGGTAGCCACACTAT+AGG 0.471004 5_1:-10558544 Msa0716980:intron
TTACTCCTTTAACAGGATCA+AGG 0.477963 5_1:-10558186 Msa0716980:CDS
TGGAATGTATTGTTAGGGGC+AGG 0.478296 5_1:+10558861 None:intergenic
CTCTACAACCAAACTGGGAA+TGG 0.478540 5_1:-10558490 Msa0716980:CDS
ATGCAGCTCAATTGCGCACT+CGG 0.490653 5_1:-10558438 Msa0716980:CDS
CCCAAAGGTACATCCCAACT+TGG 0.492802 5_1:+10558933 None:intergenic
TCTCTTGGTGCAAGCATAAG+TGG 0.493124 5_1:-10558900 Msa0716980:CDS
CAAGAACTTATTGGCCAACA+AGG 0.495886 5_1:-10558338 Msa0716980:CDS
CACGAATCATCGTAAAATTG+AGG 0.496099 5_1:+10559633 None:intergenic
TTGGGAAGAAGAGATTCTCT+TGG 0.501308 5_1:-10558915 Msa0716980:CDS
AGAACTTAGGAGACCCTTGT+TGG 0.510984 5_1:+10558324 None:intergenic
TACTCCTTTAACAGGATCAA+GGG 0.516424 5_1:-10558185 Msa0716980:CDS
GTAGAGTCGTTGTCTAAAGC+TGG 0.532621 5_1:+10558507 None:intergenic
ATTCAATCCTTTCAGACTGG+TGG 0.533760 5_1:-10558957 Msa0716980:intron
AGCGACAGCCTTAGCAACTA+CGG 0.534152 5_1:+10559584 None:intergenic
TTCAGACTGGTGGACCAAGT+TGG 0.534896 5_1:-10558947 Msa0716980:intron
GCCAAGTCCATGGTTAAGAT+GGG 0.535394 5_1:-10558214 Msa0716980:CDS
TGAACAATTTGCCAAGTCCA+TGG 0.536039 5_1:-10558224 Msa0716980:CDS
TGTCAAGTCCGTAGTTGCTA+AGG 0.541793 5_1:-10559592 Msa0716980:CDS
CATCGTAAAATTGAGGGTAG+AGG 0.558315 5_1:+10559640 None:intergenic
ACGAATCATCGTAAAATTGA+GGG 0.561360 5_1:+10559634 None:intergenic
TTACCGGTGTGACAAAGTCT+AGG 0.570159 5_1:+10558380 None:intergenic
CCAAACCGTAATTCAGCTAG+AGG 0.570737 5_1:-10559159 Msa0716980:CDS
GAACAATCATCAGCGAAAAG+AGG 0.590852 5_1:-10559188 Msa0716980:CDS
AATGTTTCCCATCTTAACCA+TGG 0.593838 5_1:+10558207 None:intergenic
AGCAAGGAAGCAGCCATGCG+GGG 0.595766 5_1:+10559555 None:intergenic
ATACCTTGACAAAACAGTCA+TGG 0.599142 5_1:+10559520 None:intergenic
ATCAGCACAAGAGACTGTCT+GGG 0.599732 5_1:+10559089 None:intergenic
GCCACACTATAGGAGATTCA+CGG 0.620665 5_1:-10558534 Msa0716980:CDS
AACGACTCTACAACCAAACT+GGG 0.624451 5_1:-10558495 Msa0716980:CDS
TGTCGCTAAAGAACCCCGCA+TGG 0.629260 5_1:-10559568 Msa0716980:CDS
GGGACACTCTTTCTCTACAG+CGG 0.636108 5_1:+10559110 None:intergenic
ACTCGGTGCCCAAGATCTGG+TGG 0.639184 5_1:-10558421 Msa0716980:CDS
AGAGAATCTCTTCTTCCCAA+AGG 0.641536 5_1:+10558918 None:intergenic
GGACACAGCAACTATGCCAA+TGG 0.642241 5_1:+10558037 None:intergenic
TGTCCTAGACTTTGTCACAC+CGG 0.643380 5_1:-10558383 Msa0716980:CDS
ACTCCTTTAACAGGATCAAG+GGG 0.648428 5_1:-10558184 Msa0716980:CDS
ATGGAAATGTAGTCTCAGCA+AGG 0.653675 5_1:+10559539 None:intergenic
TCAGCAAGGAAGCAGCCATG+CGG 0.656575 5_1:+10559553 None:intergenic
AAATACTATCATTTCCACCA+TGG 0.660518 5_1:-10559808 Msa0716980:five_prime_UTR
GGTTTGGAATGTATTGTTAG+GGG 0.668824 5_1:+10558857 None:intergenic
AAGAACTTATTGGCCAACAA+GGG 0.679001 5_1:-10558337 Msa0716980:CDS
ACCGTGAATCTCCTATAGTG+TGG 0.682140 5_1:+10558533 None:intergenic
TCAGTGTTGCTAGATAGCAG+TGG 0.688736 5_1:-10559210 Msa0716980:CDS
TCAGCACAAGAGACTGTCTG+GGG 0.742569 5_1:+10559090 None:intergenic
GGATTGGATGAATACCATGG+TGG 0.761315 5_1:+10559794 None:intergenic
ACTGGATTGGATGAATACCA+TGG 0.762767 5_1:+10559791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAACAATGTTTAAAAATG+TGG - chr5_1:10558265-10558284 Msa0716980:CDS 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG - chr5_1:10558372-10558391 Msa0716980:CDS 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG + chr5_1:10558770-10558789 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG - chr5_1:10558921-10558940 Msa0716980:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG + chr5_1:10559135-10559154 None:intergenic 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG - chr5_1:10559193-10559212 Msa0716980:CDS 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG - chr5_1:10559796-10559815 Msa0716980:five_prime_UTR 20.0%
!! GTAAACAATGTTTAAAAATG+TGG - chr5_1:10558265-10558284 Msa0716980:CDS 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG - chr5_1:10558372-10558391 Msa0716980:CDS 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG + chr5_1:10558770-10558789 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG - chr5_1:10558921-10558940 Msa0716980:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG + chr5_1:10559135-10559154 None:intergenic 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG - chr5_1:10559193-10559212 Msa0716980:CDS 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG - chr5_1:10559796-10559815 Msa0716980:five_prime_UTR 20.0%
! TGATCTTGAAAGAAAAACAA+TGG - chr5_1:10558007-10558026 Msa0716980:three_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG - chr5_1:10558271-10558290 Msa0716980:CDS 25.0%
! TGATCTATGAGTTGTATATT+GGG - chr5_1:10558435-10558454 Msa0716980:CDS 25.0%
! TGAATTTAGTTAAGATGGTT+TGG + chr5_1:10558914-10558933 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG + chr5_1:10558919-10558938 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG - chr5_1:10558920-10558939 Msa0716980:CDS 25.0%
! ACATGAAATAGATTAGTACT+AGG + chr5_1:10558986-10559005 None:intergenic 25.0%
! CAAATATGTGTTGAAAACAA+TGG + chr5_1:10559009-10559028 None:intergenic 25.0%
!! CATTGTTTTCAACACATATT+TGG - chr5_1:10559007-10559026 Msa0716980:intron 25.0%
! TTTATTCTATTGAGTCTCAT+AGG - chr5_1:10559030-10559049 Msa0716980:intron 25.0%
! TGATCTTGAAAGAAAAACAA+TGG - chr5_1:10558007-10558026 Msa0716980:three_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG - chr5_1:10558271-10558290 Msa0716980:CDS 25.0%
! TGATCTATGAGTTGTATATT+GGG - chr5_1:10558435-10558454 Msa0716980:CDS 25.0%
! TGAATTTAGTTAAGATGGTT+TGG + chr5_1:10558914-10558933 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG + chr5_1:10558919-10558938 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG - chr5_1:10558920-10558939 Msa0716980:CDS 25.0%
! ACATGAAATAGATTAGTACT+AGG + chr5_1:10558986-10559005 None:intergenic 25.0%
! CAAATATGTGTTGAAAACAA+TGG + chr5_1:10559009-10559028 None:intergenic 25.0%
!! CATTGTTTTCAACACATATT+TGG - chr5_1:10559007-10559026 Msa0716980:intron 25.0%
! TTTATTCTATTGAGTCTCAT+AGG - chr5_1:10559030-10559049 Msa0716980:intron 25.0%
AAATACTATCATTTCCACCA+TGG - chr5_1:10557944-10557963 Msa0716980:three_prime_UTR 30.0%
! CAAAATGTTTTCAACTGGAT+TGG + chr5_1:10557977-10557996 None:intergenic 30.0%
! CAGAACAAAATGTTTTCAAC+TGG + chr5_1:10557982-10558001 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG + chr5_1:10558080-10558099 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG + chr5_1:10558081-10558100 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG - chr5_1:10558086-10558105 Msa0716980:three_prime_UTR 30.0%
ACGAATCATCGTAAAATTGA+GGG + chr5_1:10558121-10558140 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG + chr5_1:10558146-10558165 None:intergenic 30.0%
CATAAAAAACCTTAACGATG+TGG - chr5_1:10558332-10558351 Msa0716980:CDS 30.0%
! ATTTTCTATTTGCATCCACA+AGG + chr5_1:10558390-10558409 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG - chr5_1:10558434-10558453 Msa0716980:CDS 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG - chr5_1:10558508-10558527 Msa0716980:CDS 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG - chr5_1:10558509-10558528 Msa0716980:CDS 30.0%
!! CTTTTGATGGTCATTGATAA+GGG + chr5_1:10558757-10558776 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG + chr5_1:10558758-10558777 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG - chr5_1:10558792-10558811 Msa0716980:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG + chr5_1:10558899-10558918 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG + chr5_1:10558900-10558919 None:intergenic 30.0%
! TCTCAATTTTCTTCGAGTAT+TGG - chr5_1:10559141-10559160 Msa0716980:CDS 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG + chr5_1:10559391-10559410 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG - chr5_1:10559405-10559424 Msa0716980:intron 30.0%
ACAGAATTTCATCAGAACTT+AGG + chr5_1:10559444-10559463 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG + chr5_1:10559702-10559721 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG - chr5_1:10559699-10559718 Msa0716980:CDS 30.0%
TGTGTCCTGAGTATAAAATT+TGG - chr5_1:10559731-10559750 Msa0716980:exon 30.0%
GTGTCCTGAGTATAAAATTT+GGG - chr5_1:10559732-10559751 Msa0716980:exon 30.0%
! AAAGCCCAAATTTTATACTC+AGG + chr5_1:10559739-10559758 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG - chr5_1:10559739-10559758 Msa0716980:exon 30.0%
AAATACTATCATTTCCACCA+TGG - chr5_1:10557944-10557963 Msa0716980:three_prime_UTR 30.0%
! CAAAATGTTTTCAACTGGAT+TGG + chr5_1:10557977-10557996 None:intergenic 30.0%
! CAGAACAAAATGTTTTCAAC+TGG + chr5_1:10557982-10558001 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG + chr5_1:10558080-10558099 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG + chr5_1:10558081-10558100 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG - chr5_1:10558086-10558105 Msa0716980:three_prime_UTR 30.0%
ACGAATCATCGTAAAATTGA+GGG + chr5_1:10558121-10558140 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG + chr5_1:10558146-10558165 None:intergenic 30.0%
CATAAAAAACCTTAACGATG+TGG - chr5_1:10558332-10558351 Msa0716980:CDS 30.0%
! ATTTTCTATTTGCATCCACA+AGG + chr5_1:10558390-10558409 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG - chr5_1:10558434-10558453 Msa0716980:CDS 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG - chr5_1:10558508-10558527 Msa0716980:CDS 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG - chr5_1:10558509-10558528 Msa0716980:CDS 30.0%
!! CTTTTGATGGTCATTGATAA+GGG + chr5_1:10558757-10558776 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG + chr5_1:10558758-10558777 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG - chr5_1:10558792-10558811 Msa0716980:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG + chr5_1:10558899-10558918 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG + chr5_1:10558900-10558919 None:intergenic 30.0%
! TCTCAATTTTCTTCGAGTAT+TGG - chr5_1:10559141-10559160 Msa0716980:CDS 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG + chr5_1:10559391-10559410 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG - chr5_1:10559405-10559424 Msa0716980:intron 30.0%
ACAGAATTTCATCAGAACTT+AGG + chr5_1:10559444-10559463 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG + chr5_1:10559702-10559721 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG - chr5_1:10559699-10559718 Msa0716980:CDS 30.0%
TGTGTCCTGAGTATAAAATT+TGG - chr5_1:10559731-10559750 Msa0716980:exon 30.0%
GTGTCCTGAGTATAAAATTT+GGG - chr5_1:10559732-10559751 Msa0716980:exon 30.0%
! AAAGCCCAAATTTTATACTC+AGG + chr5_1:10559739-10559758 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG - chr5_1:10559739-10559758 Msa0716980:exon 30.0%
AGACTAGAAGAGAAAAAAGC+AGG + chr5_1:10558052-10558071 None:intergenic 35.0%
CACGAATCATCGTAAAATTG+AGG + chr5_1:10558122-10558141 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG + chr5_1:10558147-10558166 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr5_1:10558229-10558248 Msa0716980:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr5_1:10558235-10558254 None:intergenic 35.0%
! TTTTATATATAACCGCGACG+AGG - chr5_1:10558302-10558321 Msa0716980:CDS 35.0%
ATAACAAGTGACTGCAATTG+TGG + chr5_1:10558358-10558377 None:intergenic 35.0%
ATGAGTTGTATATTGGGTGT+TGG - chr5_1:10558441-10558460 Msa0716980:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr5_1:10558601-10558620 None:intergenic 35.0%
GCATTAGAGTAGAAAACAAG+AGG + chr5_1:10558735-10558754 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG + chr5_1:10558898-10558917 None:intergenic 35.0%
!! AGTCTAGGACAAACAGATTT+TGG + chr5_1:10559360-10559379 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG - chr5_1:10559415-10559434 Msa0716980:intron 35.0%
AATGTTTCCCATCTTAACCA+TGG + chr5_1:10559548-10559567 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG - chr5_1:10559559-10559578 Msa0716980:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG - chr5_1:10559566-10559585 Msa0716980:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG - chr5_1:10559567-10559586 Msa0716980:CDS 35.0%
AGACTAGAAGAGAAAAAAGC+AGG + chr5_1:10558052-10558071 None:intergenic 35.0%
CACGAATCATCGTAAAATTG+AGG + chr5_1:10558122-10558141 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG + chr5_1:10558147-10558166 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr5_1:10558229-10558248 Msa0716980:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr5_1:10558235-10558254 None:intergenic 35.0%
! TTTTATATATAACCGCGACG+AGG - chr5_1:10558302-10558321 Msa0716980:CDS 35.0%
ATAACAAGTGACTGCAATTG+TGG + chr5_1:10558358-10558377 None:intergenic 35.0%
ATGAGTTGTATATTGGGTGT+TGG - chr5_1:10558441-10558460 Msa0716980:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr5_1:10558601-10558620 None:intergenic 35.0%
GCATTAGAGTAGAAAACAAG+AGG + chr5_1:10558735-10558754 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG + chr5_1:10558898-10558917 None:intergenic 35.0%
!! AGTCTAGGACAAACAGATTT+TGG + chr5_1:10559360-10559379 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG - chr5_1:10559415-10559434 Msa0716980:intron 35.0%
AATGTTTCCCATCTTAACCA+TGG + chr5_1:10559548-10559567 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG - chr5_1:10559559-10559578 Msa0716980:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG - chr5_1:10559566-10559585 Msa0716980:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG - chr5_1:10559567-10559586 Msa0716980:CDS 35.0%
! ACTGGATTGGATGAATACCA+TGG + chr5_1:10557964-10557983 None:intergenic 40.0%
CATCGTAAAATTGAGGGTAG+AGG + chr5_1:10558115-10558134 None:intergenic 40.0%
ATGGAAATGTAGTCTCAGCA+AGG + chr5_1:10558216-10558235 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG - chr5_1:10558564-10558583 Msa0716980:intron 40.0%
ATTCAATCCTTTCAGACTGG+TGG - chr5_1:10558795-10558814 Msa0716980:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG + chr5_1:10558837-10558856 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG - chr5_1:10558837-10558856 Msa0716980:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG - chr5_1:10558954-10558973 Msa0716980:intron 40.0%
TTCTTCCTTTGTTGCATCAG+TGG - chr5_1:10559165-10559184 Msa0716980:CDS 40.0%
TTATGCCACTGATGCAACAA+AGG + chr5_1:10559173-10559192 None:intergenic 40.0%
GTTATAGGTAGCCACACTAT+AGG - chr5_1:10559208-10559227 Msa0716980:CDS 40.0%
AACGACTCTACAACCAAACT+GGG - chr5_1:10559257-10559276 Msa0716980:intron 40.0%
! GCAATTGAGCTGCATAGTTT+TGG + chr5_1:10559309-10559328 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG - chr5_1:10559414-10559433 Msa0716980:intron 40.0%
TGAACAATTTGCCAAGTCCA+TGG - chr5_1:10559528-10559547 Msa0716980:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG - chr5_1:10559568-10559587 Msa0716980:CDS 40.0%
! ACTGGATTGGATGAATACCA+TGG + chr5_1:10557964-10557983 None:intergenic 40.0%
CATCGTAAAATTGAGGGTAG+AGG + chr5_1:10558115-10558134 None:intergenic 40.0%
ATGGAAATGTAGTCTCAGCA+AGG + chr5_1:10558216-10558235 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG - chr5_1:10558564-10558583 Msa0716980:intron 40.0%
ATTCAATCCTTTCAGACTGG+TGG - chr5_1:10558795-10558814 Msa0716980:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG + chr5_1:10558837-10558856 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG - chr5_1:10558837-10558856 Msa0716980:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG - chr5_1:10558954-10558973 Msa0716980:intron 40.0%
TTCTTCCTTTGTTGCATCAG+TGG - chr5_1:10559165-10559184 Msa0716980:CDS 40.0%
TTATGCCACTGATGCAACAA+AGG + chr5_1:10559173-10559192 None:intergenic 40.0%
GTTATAGGTAGCCACACTAT+AGG - chr5_1:10559208-10559227 Msa0716980:CDS 40.0%
AACGACTCTACAACCAAACT+GGG - chr5_1:10559257-10559276 Msa0716980:intron 40.0%
! GCAATTGAGCTGCATAGTTT+TGG + chr5_1:10559309-10559328 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG - chr5_1:10559414-10559433 Msa0716980:intron 40.0%
TGAACAATTTGCCAAGTCCA+TGG - chr5_1:10559528-10559547 Msa0716980:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG - chr5_1:10559568-10559587 Msa0716980:CDS 40.0%
GGATTGGATGAATACCATGG+TGG + chr5_1:10557961-10557980 None:intergenic 45.0%
TGTCAAGTCCGTAGTTGCTA+AGG - chr5_1:10558160-10558179 Msa0716980:CDS 45.0%
CAATTGTGGCCACATCGTTA+AGG + chr5_1:10558344-10558363 None:intergenic 45.0%
! TCAGTGTTGCTAGATAGCAG+TGG - chr5_1:10558542-10558561 Msa0716980:intron 45.0%
CCTCTAGCTGAATTACGGTT+TGG + chr5_1:10558596-10558615 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG - chr5_1:10558593-10558612 Msa0716980:intron 45.0%
ATCAGCACAAGAGACTGTCT+GGG + chr5_1:10558666-10558685 None:intergenic 45.0%
TATCAGCACAAGAGACTGTC+TGG + chr5_1:10558667-10558686 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG - chr5_1:10558818-10558837 Msa0716980:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG - chr5_1:10558819-10558838 Msa0716980:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG - chr5_1:10558852-10558871 Msa0716980:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG + chr5_1:10558894-10558913 None:intergenic 45.0%
ATACAACTGCACAATCGCGA+CGG + chr5_1:10559095-10559114 None:intergenic 45.0%
GCCACACTATAGGAGATTCA+CGG - chr5_1:10559218-10559237 Msa0716980:CDS 45.0%
ACCGTGAATCTCCTATAGTG+TGG + chr5_1:10559222-10559241 None:intergenic 45.0%
! GTAGAGTCGTTGTCTAAAGC+TGG + chr5_1:10559248-10559267 None:intergenic 45.0%
CAACGACTCTACAACCAAAC+TGG - chr5_1:10559256-10559275 Msa0716980:intron 45.0%
CTCTACAACCAAACTGGGAA+TGG - chr5_1:10559262-10559281 Msa0716980:intron 45.0%
TTTGGTCTCCACCAGATCTT+GGG + chr5_1:10559342-10559361 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG + chr5_1:10559343-10559362 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG - chr5_1:10559369-10559388 Msa0716980:intron 45.0%
TTACCGGTGTGACAAAGTCT+AGG + chr5_1:10559375-10559394 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG + chr5_1:10559431-10559450 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG - chr5_1:10559537-10559556 Msa0716980:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG - chr5_1:10559538-10559557 Msa0716980:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG + chr5_1:10559542-10559561 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG + chr5_1:10559574-10559593 None:intergenic 45.0%
GGATTGGATGAATACCATGG+TGG + chr5_1:10557961-10557980 None:intergenic 45.0%
TGTCAAGTCCGTAGTTGCTA+AGG - chr5_1:10558160-10558179 Msa0716980:CDS 45.0%
CAATTGTGGCCACATCGTTA+AGG + chr5_1:10558344-10558363 None:intergenic 45.0%
! TCAGTGTTGCTAGATAGCAG+TGG - chr5_1:10558542-10558561 Msa0716980:intron 45.0%
CCTCTAGCTGAATTACGGTT+TGG + chr5_1:10558596-10558615 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG - chr5_1:10558593-10558612 Msa0716980:intron 45.0%
ATCAGCACAAGAGACTGTCT+GGG + chr5_1:10558666-10558685 None:intergenic 45.0%
TATCAGCACAAGAGACTGTC+TGG + chr5_1:10558667-10558686 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG - chr5_1:10558818-10558837 Msa0716980:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG - chr5_1:10558819-10558838 Msa0716980:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG - chr5_1:10558852-10558871 Msa0716980:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG + chr5_1:10558894-10558913 None:intergenic 45.0%
ATACAACTGCACAATCGCGA+CGG + chr5_1:10559095-10559114 None:intergenic 45.0%
GCCACACTATAGGAGATTCA+CGG - chr5_1:10559218-10559237 Msa0716980:CDS 45.0%
ACCGTGAATCTCCTATAGTG+TGG + chr5_1:10559222-10559241 None:intergenic 45.0%
! GTAGAGTCGTTGTCTAAAGC+TGG + chr5_1:10559248-10559267 None:intergenic 45.0%
CAACGACTCTACAACCAAAC+TGG - chr5_1:10559256-10559275 Msa0716980:intron 45.0%
CTCTACAACCAAACTGGGAA+TGG - chr5_1:10559262-10559281 Msa0716980:intron 45.0%
TTTGGTCTCCACCAGATCTT+GGG + chr5_1:10559342-10559361 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG + chr5_1:10559343-10559362 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG - chr5_1:10559369-10559388 Msa0716980:intron 45.0%
TTACCGGTGTGACAAAGTCT+AGG + chr5_1:10559375-10559394 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG + chr5_1:10559431-10559450 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG - chr5_1:10559537-10559556 Msa0716980:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG - chr5_1:10559538-10559557 Msa0716980:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG + chr5_1:10559542-10559561 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG + chr5_1:10559574-10559593 None:intergenic 45.0%
AGCGACAGCCTTAGCAACTA+CGG + chr5_1:10558171-10558190 None:intergenic 50.0%
TTATGTGTCTGACCTCGTCG+CGG + chr5_1:10558317-10558336 None:intergenic 50.0%
GGGACACTCTTTCTCTACAG+CGG + chr5_1:10558645-10558664 None:intergenic 50.0%
TCAGCACAAGAGACTGTCTG+GGG + chr5_1:10558665-10558684 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG + chr5_1:10558805-10558824 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG - chr5_1:10558805-10558824 Msa0716980:CDS 50.0%
! TCAGACTGGTGGACCAAGTT+GGG - chr5_1:10558806-10558825 Msa0716980:CDS 50.0%
! CCCAAAGGTACATCCCAACT+TGG + chr5_1:10558822-10558841 None:intergenic 50.0%
CGGCAACACAATCTCTATCG+CGG + chr5_1:10559075-10559094 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG + chr5_1:10559273-10559292 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG - chr5_1:10559314-10559333 Msa0716980:intron 50.0%
GGACACAGCAACTATGCCAA+TGG + chr5_1:10559718-10559737 None:intergenic 50.0%
AGCGACAGCCTTAGCAACTA+CGG + chr5_1:10558171-10558190 None:intergenic 50.0%
TTATGTGTCTGACCTCGTCG+CGG + chr5_1:10558317-10558336 None:intergenic 50.0%
GGGACACTCTTTCTCTACAG+CGG + chr5_1:10558645-10558664 None:intergenic 50.0%
TCAGCACAAGAGACTGTCTG+GGG + chr5_1:10558665-10558684 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG + chr5_1:10558805-10558824 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG - chr5_1:10558805-10558824 Msa0716980:CDS 50.0%
! TCAGACTGGTGGACCAAGTT+GGG - chr5_1:10558806-10558825 Msa0716980:CDS 50.0%
! CCCAAAGGTACATCCCAACT+TGG + chr5_1:10558822-10558841 None:intergenic 50.0%
CGGCAACACAATCTCTATCG+CGG + chr5_1:10559075-10559094 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG + chr5_1:10559273-10559292 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG - chr5_1:10559314-10559333 Msa0716980:intron 50.0%
GGACACAGCAACTATGCCAA+TGG + chr5_1:10559718-10559737 None:intergenic 50.0%
TGTCGCTAAAGAACCCCGCA+TGG - chr5_1:10558184-10558203 Msa0716980:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG + chr5_1:10558202-10558221 None:intergenic 55.0%
TGTCGCTAAAGAACCCCGCA+TGG - chr5_1:10558184-10558203 Msa0716980:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG + chr5_1:10558202-10558221 None:intergenic 55.0%
AGCAAGGAAGCAGCCATGCG+GGG + chr5_1:10558200-10558219 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG + chr5_1:10558201-10558220 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG - chr5_1:10559331-10559350 Msa0716980:intron 60.0%
AGCAAGGAAGCAGCCATGCG+GGG + chr5_1:10558200-10558219 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG + chr5_1:10558201-10558220 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG - chr5_1:10559331-10559350 Msa0716980:intron 60.0%
!! CGCACTCGGTGCCCAAGATC+TGG - chr5_1:10559328-10559347 Msa0716980:intron 65.0%
!! CGCACTCGGTGCCCAAGATC+TGG - chr5_1:10559328-10559347 Msa0716980:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10557911 10559863 10557911 ID=Msa0716980;Name=Msa0716980
chr5_1 mRNA 10557911 10559863 10557911 ID=Msa0716980-mRNA-1;Parent=Msa0716980;Name=Msa0716980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=115|1|1|1|1|1|4|236|331
chr5_1 exon 10557911 10558559 10557911 ID=Msa0716980-mRNA-1:exon:4296;Parent=Msa0716980-mRNA-1
chr5_1 exon 10558799 10558964 10558799 ID=Msa0716980-mRNA-1:exon:4295;Parent=Msa0716980-mRNA-1
chr5_1 exon 10559053 10559244 10559053 ID=Msa0716980-mRNA-1:exon:4294;Parent=Msa0716980-mRNA-1
chr5_1 exon 10559524 10559863 10559524 ID=Msa0716980-mRNA-1:exon:4293;Parent=Msa0716980-mRNA-1
chr5_1 five_prime_UTR 10559749 10559863 10559749 ID=Msa0716980-mRNA-1:five_prime_utr;Parent=Msa0716980-mRNA-1
chr5_1 CDS 10559524 10559748 10559524 ID=Msa0716980-mRNA-1:cds;Parent=Msa0716980-mRNA-1
chr5_1 CDS 10559053 10559244 10559053 ID=Msa0716980-mRNA-1:cds;Parent=Msa0716980-mRNA-1
chr5_1 CDS 10558799 10558964 10558799 ID=Msa0716980-mRNA-1:cds;Parent=Msa0716980-mRNA-1
chr5_1 CDS 10558147 10558559 10558147 ID=Msa0716980-mRNA-1:cds;Parent=Msa0716980-mRNA-1
chr5_1 three_prime_UTR 10557911 10558146 10557911 ID=Msa0716980-mRNA-1:three_prime_utr;Parent=Msa0716980-mRNA-1
Gene Sequence

>Msa0716980

ATGGTCAATTCTATAAACTTTCTCCTGCTTTTTTCTCTTCTAGTCTTTGCTCCCTTCTGTCACTGTAAAAAGAAAGTTGATGGTTACCTCTACCCTCAATTTTACGATGATTCGTGTCCCAAAGTTGAAGAGATTGTCAAGTCCGTAGTTGCTAAGGCTGTCGCTAAAGAACCCCGCATGGCTGCTTCCTTGCTGAGACTACATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCATCAGTGTTGCTAGATAGCAGTGGAACAATCATCAGCGAAAAGAGGTCAAATCCAAACCGTAATTCAGCTAGAGGATTTGAAGTCATTGAAGAAATTAAATCCGCTGTAGAGAAAGAGTGTCCCCAGACAGTCTCTTGTGCTGATATTTTGACTCTAGCTGCTAGAGATTCAACTGTTCTTACTGGTGGACCAAGTTGGGATGTACCTTTGGGAAGAAGAGATTCTCTTGGTGCAAGCATAAGTGGCTCAAACAACAACATTCCTGCCCCTAACAATACATTCCAAACCATCTTAACTAAATTCAAGCTTAAGGGACTTAACATTGTTGATCTAGTTGCTCTATCTGGTAGCCACACTATAGGAGATTCACGGTGCACCAGCTTTAGACAACGACTCTACAACCAAACTGGGAATGGCAAGTCAGATTTCACTCTTGACCAAAACTATGCAGCTCAATTGCGCACTCGGTGCCCAAGATCTGGTGGAGACCAAAATCTGTTTGTCCTAGACTTTGTCACACCGGTAAAATTCGACAACAACTACTACAAGAACTTATTGGCCAACAAGGGTCTCCTAAGTTCTGATGAAATTCTGTTGACAAAGAATCAAGTATCTGCAGATTTAGTGAAAAAGTATGCAGAAAGCAATGATCTTTTCTTTGAACAATTTGCCAAGTCCATGGTTAAGATGGGAAACATTACTCCTTTAACAGGATCAAGGGGTGAAATCAGAAAACGTTGCAGAAAGATTAATAACTGA
Protein sequence

>Msa0716980

MVNSINFLLLFSLLVFAPFCHCKKKVDGYLYPQFYDDSCPKVEEIVKSVVAKAVAKEPRMAASLLRLHFHDCFVKGCDASVLLDSSGTIISEKRSNPNRNSARGFEVIEEIKSAVEKECPQTVSCADILTLAARDSTVLTGGPSWDVPLGRRDSLGASISGSNNNIPAPNNTFQTILTKFKLKGLNIVDLVALSGSHTIGDSRCTSFRQRLYNQTGNGKSDFTLDQNYAAQLRTRCPRSGGDQNLFVLDFVTPVKFDNNYYKNLLANKGLLSSDEILLTKNQVSADLVKKYAESNDLFFEQFAKSMVKMGNITPLTGSRGEIRKRCRKINN*