AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0951200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951200 MtrunA17_Chr6g0467321 94.231 520 11 3 10 517 12 524 0.0 971
Msa0951200 MtrunA17_Chr5g0428251 44.466 524 253 8 9 517 26 526 1.23e-159 465
Msa0951200 MtrunA17_Chr3g0140931 45.565 496 243 4 30 513 41 521 1.57e-154 452
Msa0951200 MtrunA17_Chr5g0397991 47.881 472 219 5 23 479 48 507 2.86e-152 446
Msa0951200 MtrunA17_Chr6g0473701 45.562 507 238 8 20 511 112 595 6.19e-152 447
Msa0951200 MtrunA17_Chr8g0389801 46.947 475 226 5 22 481 2 465 7.38e-152 442
Msa0951200 MtrunA17_Chr1g0203791 47.908 478 216 6 40 496 64 529 2.72e-150 441
Msa0951200 MtrunA17_Chr2g0295631 44.625 493 250 4 38 510 18 507 1.66e-144 425
Msa0951200 MtrunA17_Chr4g0013031 40.947 486 262 7 22 489 46 524 3.58e-126 379
Msa0951200 MtrunA17_Chr6g0487091 43.324 367 174 7 148 494 54 406 2.57e-89 280
Msa0951200 MtrunA17_Chr6g0487091 50.794 63 31 0 38 100 25 87 4.09e-12 68.2
Msa0951200 MtrunA17_Chr6g0483361 33.621 464 281 6 30 477 15 467 1.76e-79 256
Msa0951200 MtrunA17_Chr6g0483381 33.193 476 291 5 29 489 16 479 1.23e-78 254
Msa0951200 MtrunA17_Chr6g0477961 33.117 462 281 7 43 489 31 479 2.59e-76 248
Msa0951200 MtrunA17_Chr1g0208791 31.115 511 312 8 10 499 11 502 1.33e-74 244
Msa0951200 MtrunA17_Chr1g0208821 31.788 453 282 7 40 477 41 481 2.08e-74 243
Msa0951200 MtrunA17_Chr6g0483341 31.868 455 286 5 37 477 38 482 2.62e-72 238
Msa0951200 MtrunA17_Chr8g0392601 31.441 458 289 7 38 482 10 455 3.08e-71 235
Msa0951200 MtrunA17_Chr6g0483331 30.043 466 302 6 37 489 9 463 7.12e-66 220
Msa0951200 MtrunA17_Chr6g0449061 31.161 491 307 7 15 487 5 482 1.79e-65 220
Msa0951200 MtrunA17_Chr7g0251331 29.978 457 297 6 34 477 20 466 1.77e-63 214
Msa0951200 MtrunA17_Chr6g0483351 33.247 388 234 4 99 471 1 378 5.03e-63 212
Msa0951200 MtrunA17_Chr6g0483161 34.748 377 224 5 98 471 2 359 3.05e-62 208
Msa0951200 MtrunA17_Chr1g0208891 30.222 450 293 4 40 477 24 464 3.61e-60 205
Msa0951200 MtrunA17_Chr4g0024501 27.926 487 320 7 7 477 33 504 2.81e-59 204
Msa0951200 MtrunA17_Chr1g0208881 29.701 468 308 4 22 477 7 465 8.18e-58 199
Msa0951200 MtrunA17_Chr2g0317131 29.490 451 297 4 39 477 42 483 8.75e-56 194
Msa0951200 MtrunA17_Chr2g0322671 26.265 514 342 6 3 500 11 503 4.74e-55 192
Msa0951200 MtrunA17_Chr6g0468521 27.200 500 324 8 7 494 10 481 7.39e-54 189
Msa0951200 MtrunA17_Chr8g0368001 28.101 516 325 13 3 500 24 511 1.16e-52 186
Msa0951200 MtrunA17_Chr2g0317151 29.712 451 296 3 39 477 32 473 6.15e-51 181
Msa0951200 MtrunA17_Chr7g0251321 32.031 384 235 8 99 477 1 363 6.95e-51 178
Msa0951200 MtrunA17_Chr2g0317161 29.047 451 299 5 39 477 30 471 2.08e-50 179
Msa0951200 MtrunA17_Chr3g0132531 31.111 495 300 9 1 477 15 486 5.02e-49 176
Msa0951200 MtrunA17_Chr2g0288281 25.971 412 270 5 99 498 1 389 1.20e-47 169
Msa0951200 MtrunA17_Chr2g0317171 28.160 451 303 5 39 477 36 477 1.33e-46 169
Msa0951200 MtrunA17_Chr6g0468511 27.126 494 322 8 7 488 10 477 7.72e-46 167
Msa0951200 MtrunA17_Chr6g0468531 26.489 487 323 8 7 481 10 473 8.08e-46 167
Msa0951200 MtrunA17_Chr5g0412541 28.118 473 311 7 35 493 31 488 9.75e-46 167
Msa0951200 MtrunA17_Chr5g0412771 27.887 459 303 7 37 480 53 498 5.16e-45 165
Msa0951200 MtrunA17_Chr5g0398571 35.202 321 185 6 195 500 1 313 2.33e-43 156
Msa0951200 MtrunA17_Chr7g0254511 25.651 499 331 8 18 492 1 483 2.39e-43 160
Msa0951200 MtrunA17_Chr2g0317221 28.463 397 263 3 93 477 4 391 3.19e-40 150
Msa0951200 MtrunA17_Chr5g0412571 29.847 392 254 4 97 476 38 420 4.27e-40 150
Msa0951200 MtrunA17_Chr5g0442331 26.749 486 323 10 11 475 11 484 1.54e-39 150
Msa0951200 MtrunA17_Chr7g0254521 24.846 487 318 10 37 497 28 492 2.48e-39 149
Msa0951200 MtrunA17_Chr1g0154441 27.665 394 263 5 99 480 1 384 6.07e-38 143
Msa0951200 MtrunA17_Chr1g0202761 24.605 443 311 4 41 471 44 475 7.30e-37 142
Msa0951200 MtrunA17_Chr7g0254531 25.862 406 263 8 99 482 1 390 4.25e-34 133
Msa0951200 MtrunA17_Chr7g0248051 25.265 471 323 5 14 471 48 502 8.35e-33 131
Msa0951200 MtrunA17_Chr3g0132541 25.561 446 277 7 36 480 37 428 3.20e-31 125
Msa0951200 MtrunA17_Chr6g0460541 24.648 426 289 7 97 509 3 409 3.84e-28 116
Msa0951200 MtrunA17_Chr7g0254501 24.924 329 214 6 184 495 2 314 4.27e-24 102
Msa0951200 MtrunA17_Chr6g0483264 36.275 204 111 3 287 475 1 200 4.69e-22 94.7
Msa0951200 MtrunA17_Chr8g0364761 25.632 277 193 6 41 314 54 320 6.36e-22 96.7
Msa0951200 MtrunA17_Chr5g0398551 48.276 87 45 0 33 119 36 122 3.60e-20 86.7
Msa0951200 MtrunA17_Chr6g0483241 28.421 190 126 2 97 285 1 181 5.41e-20 87.8
Msa0951200 MtrunA17_Chr5g0440661 24.646 353 201 9 99 448 1 291 2.95e-17 82.8
Msa0951200 MtrunA17_Chr6g0483221 35.333 150 90 2 325 471 9 154 3.44e-17 79.3
Msa0951200 MtrunA17_Chr6g0483261 38.961 154 87 2 325 475 9 158 4.43e-17 79.3
Msa0951200 MtrunA17_Chr6g0460531 26.761 213 151 3 20 229 4 214 6.10e-16 77.8
Msa0951200 MtrunA17_Chr8g0364751 29.801 151 105 1 325 475 22 171 1.66e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951200 AT1G71870.1 69.364 519 119 6 18 510 1 505 0.0 694
Msa0951200 AT5G19700.1 48.434 479 220 6 32 494 27 494 3.10e-153 447
Msa0951200 AT4G29140.1 48.454 485 223 5 33 502 48 520 7.82e-152 444
Msa0951200 AT5G49130.1 50.418 478 217 4 20 478 4 480 5.50e-151 441
Msa0951200 AT1G58340.1 44.338 521 251 8 8 500 16 525 1.89e-141 418
Msa0951200 AT5G52050.1 42.739 482 247 7 36 500 30 499 1.62e-135 402
Msa0951200 AT4G23030.1 46.526 475 225 7 21 478 11 473 1.76e-131 392
Msa0951200 AT2G38510.1 41.498 494 260 6 37 510 2 486 1.38e-130 389
Msa0951200 AT4G22790.1 37.996 479 268 8 36 500 25 488 9.86e-83 265
Msa0951200 AT5G52450.1 34.038 473 282 6 21 475 3 463 1.14e-75 247
Msa0951200 AT1G73700.1 33.755 474 285 5 18 475 1 461 4.19e-72 237
Msa0951200 AT2G34360.1 32.071 449 290 5 38 480 24 463 2.46e-71 235
Msa0951200 AT1G66760.2 33.063 493 295 6 14 492 11 482 3.05e-70 233
Msa0951200 AT1G15170.1 34.000 450 274 5 41 477 34 473 7.05e-70 231
Msa0951200 AT1G66760.1 32.911 474 283 6 14 473 11 463 2.81e-67 224
Msa0951200 AT1G71140.1 32.900 462 267 10 39 477 24 465 3.90e-67 224
Msa0951200 AT1G15150.1 31.130 469 294 8 41 495 31 484 8.36e-67 224
Msa0951200 AT1G64820.1 30.837 454 287 4 39 477 27 468 1.44e-64 218
Msa0951200 AT1G15180.1 32.294 449 283 4 41 477 35 474 2.20e-64 217
Msa0951200 AT2G34360.2 30.474 443 263 4 38 480 24 421 5.33e-64 215
Msa0951200 AT1G15160.1 29.764 467 303 5 41 495 31 484 1.74e-63 215
Msa0951200 AT1G66780.1 30.889 450 263 8 60 484 54 480 1.15e-59 204
Msa0951200 AT2G04100.1 31.042 451 286 6 41 477 30 469 2.90e-59 204
Msa0951200 AT2G04040.1 30.435 460 289 8 35 477 21 466 6.36e-58 200
Msa0951200 AT3G23550.1 29.783 460 296 5 19 465 14 459 2.28e-57 198
Msa0951200 AT2G04100.2 30.787 445 283 6 41 471 30 463 2.85e-57 198
Msa0951200 AT2G04050.1 31.004 458 289 4 35 477 21 466 1.24e-56 196
Msa0951200 AT2G04080.1 29.011 455 302 4 35 477 21 466 5.98e-56 194
Msa0951200 AT2G04070.1 28.294 463 295 6 35 477 21 466 1.60e-55 193
Msa0951200 AT1G15170.2 34.072 361 215 5 130 477 4 354 5.33e-55 189
Msa0951200 AT3G23560.1 29.158 463 305 5 19 468 17 469 2.06e-54 190
Msa0951200 AT3G26590.1 30.110 455 290 7 41 480 45 486 3.24e-54 191
Msa0951200 AT1G61890.1 27.815 453 298 7 41 477 47 486 6.94e-54 189
Msa0951200 AT2G04090.1 28.731 449 299 4 41 477 30 469 1.93e-53 188
Msa0951200 AT2G04080.2 28.508 449 300 4 35 471 21 460 2.09e-53 187
Msa0951200 AT1G61890.2 27.740 447 294 7 41 471 47 480 9.78e-53 186
Msa0951200 AT1G66760.4 32.216 388 229 5 14 387 11 378 1.00e-51 181
Msa0951200 AT1G11670.1 25.835 449 312 4 41 477 50 489 3.89e-51 182
Msa0951200 AT1G12950.1 29.011 455 295 7 41 480 67 508 1.04e-49 179
Msa0951200 AT4G21910.3 28.540 452 295 6 41 477 55 493 3.93e-49 177
Msa0951200 AT4G21910.1 28.540 452 295 6 41 477 55 493 3.93e-49 177
Msa0951200 AT5G38030.1 30.155 451 287 8 41 476 45 482 8.08e-49 176
Msa0951200 AT3G59030.1 26.696 457 312 4 39 482 49 495 2.45e-48 175
Msa0951200 AT3G26590.2 30.886 395 249 5 99 480 1 384 3.87e-48 171
Msa0951200 AT3G21690.1 26.711 453 303 6 41 477 52 491 4.09e-48 174
Msa0951200 AT1G15150.2 31.053 380 233 8 130 495 4 368 5.46e-48 171
Msa0951200 AT4G21910.2 28.918 453 292 7 41 477 57 495 1.69e-47 172
Msa0951200 AT4G21910.4 28.918 453 292 7 41 477 57 495 1.69e-47 172
Msa0951200 AT1G61890.3 27.470 415 273 6 41 439 47 449 2.78e-46 168
Msa0951200 AT4G00350.1 28.041 485 314 12 15 480 60 528 3.65e-46 169
Msa0951200 AT4G21903.1 28.345 441 284 8 68 492 80 504 5.59e-46 168
Msa0951200 AT4G21903.2 28.733 442 283 9 68 491 80 507 1.37e-45 167
Msa0951200 AT1G23300.1 25.577 520 340 10 9 500 14 514 1.63e-45 167
Msa0951200 AT5G44050.1 28.884 457 286 9 41 476 40 478 4.29e-45 166
Msa0951200 AT3G23560.2 29.365 378 245 4 19 383 17 385 9.71e-45 163
Msa0951200 AT1G33100.1 27.362 508 326 11 11 500 9 491 5.39e-44 162
Msa0951200 AT1G33110.1 27.778 504 321 11 15 500 16 494 6.34e-44 162
Msa0951200 AT1G33090.1 28.628 503 318 13 15 500 16 494 9.48e-44 162
Msa0951200 AT5G65380.1 29.067 461 290 8 36 476 32 475 5.06e-43 160
Msa0951200 AT4G21903.3 27.384 409 268 6 99 492 1 395 3.71e-41 152
Msa0951200 AT5G10420.1 27.887 459 304 7 41 484 38 484 6.83e-41 154
Msa0951200 AT1G47530.1 27.212 452 303 7 40 477 34 473 1.06e-40 153
Msa0951200 AT1G33080.1 27.022 507 320 10 15 499 16 494 1.47e-40 153
Msa0951200 AT1G66760.3 31.778 343 211 4 144 473 3 335 2.06e-40 149
Msa0951200 AT1G33080.2 27.479 484 303 9 15 476 16 473 1.26e-39 150
Msa0951200 AT3G03620.2 25.440 511 339 9 19 512 15 500 1.76e-35 139
Msa0951200 AT3G03620.1 25.440 511 339 9 19 512 15 500 1.76e-35 139
Msa0951200 AT3G59030.2 26.882 372 250 3 39 397 49 411 1.81e-35 137
Msa0951200 AT4G25640.1 24.375 480 339 6 14 480 7 475 1.48e-34 136
Msa0951200 AT4G25640.2 24.375 480 339 6 14 480 7 475 2.25e-34 136
Msa0951200 AT1G33110.2 29.177 401 245 8 15 397 16 395 4.24e-34 133
Msa0951200 AT5G17700.2 25.519 482 329 8 37 502 30 497 5.62e-34 134
Msa0951200 AT5G17700.1 25.519 482 329 8 37 502 30 497 5.62e-34 134
Msa0951200 AT1G15180.2 30.147 272 170 3 130 389 4 267 1.31e-33 132
Msa0951200 AT1G47530.2 25.831 391 268 5 99 477 1 381 7.85e-32 127
Msa0951200 AT4G25640.3 23.709 426 303 4 14 427 7 422 1.14e-30 124
Msa0951200 AT5G17700.3 23.342 377 260 7 37 397 30 393 1.52e-18 88.2

Find 146 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCGGTGGGCTTGGCATTT+TGG 0.158420 6_3:-40911434 Msa0951200:CDS
TGCATCAGTCATGCCAATTA+TGG 0.213415 6_3:-40911577 Msa0951200:CDS
GGTTTAGTGGGCTTTGGTTT+GGG 0.232149 6_3:-40911401 Msa0951200:CDS
AACATGTTCATAGCTGTTAT+TGG 0.240549 6_3:+40917019 None:intergenic
TGTGCCTTTGAATTATTTCT+TGG 0.249562 6_3:-40916555 Msa0951200:CDS
TTATTATTAGAGAATGAAAA+TGG 0.257784 6_3:-40911207 Msa0951200:CDS
GGAACGGCCCGGCCCGTCAT+AGG 0.259885 6_3:-40911501 Msa0951200:CDS
ACATTGGCTGTTGCTGCTAC+TGG 0.269679 6_3:-40916254 Msa0951200:CDS
GGGTTTAGTGGGCTTTGGTT+TGG 0.283627 6_3:-40911402 Msa0951200:CDS
TGGCCGGGCTGTGGCGGTGG+CGG 0.287160 6_3:-40916410 Msa0951200:CDS
CGGGGTATGTCGGGTTGTTT+AGG 0.310428 6_3:-40916454 Msa0951200:CDS
TACTCCGGTGGCGGTGGGCT+TGG 0.310724 6_3:-40911442 Msa0951200:CDS
GGCTGTGGCGGTGGCGGAGG+AGG 0.325085 6_3:-40916404 Msa0951200:CDS
AGCTCACATAGGCCCATAAT+TGG 0.327464 6_3:+40911564 None:intergenic
CCGGGCTGTGGCGGTGGCGG+AGG 0.329663 6_3:-40916407 Msa0951200:CDS
GTATGAGATTGTTACTGTTT+TGG 0.341937 6_3:-40916297 Msa0951200:CDS
GATGGTGGTGAGTGAAGGTT+TGG 0.343489 6_3:-40916378 Msa0951200:CDS
GCTGCTAGCTTTGCTTTGTA+TGG 0.344505 6_3:+40911717 None:intergenic
ATAGGTTTCACAAACATAAC+AGG 0.347684 6_3:-40916917 Msa0951200:CDS
GCCCGGCCCATCCGTATCTA+AGG 0.353477 6_3:+40911634 None:intergenic
GTGTTGATGGCGGGGTATGT+CGG 0.357012 6_3:-40916464 Msa0951200:CDS
GTTAAGCCAAAGGAGACTTA+TGG 0.359328 6_3:+40916763 None:intergenic
TTGGTCATGGTGATGCAATT+TGG 0.360486 6_3:-40916536 Msa0951200:CDS
ATGCCGCAGCCGGTTGTTTG+TGG 0.369829 6_3:+40911531 None:intergenic
AGATTGGGTTTAGTGGGCTT+TGG 0.370604 6_3:-40911407 Msa0951200:CDS
CCTCGCCTCCGGTCTGGAAC+CGG 0.372784 6_3:-40916876 Msa0951200:CDS
CGTCGGCCTCGCCTCCGGTC+TGG 0.378105 6_3:-40916882 Msa0951200:CDS
GAACGGCCCGGCCCGTCATA+GGG 0.387749 6_3:-40911500 Msa0951200:CDS
TTGGGAAGCTGAGGCTTTGA+AGG 0.399593 6_3:-40911316 Msa0951200:CDS
AGGTGGCCGGGCTGTGGCGG+TGG 0.402827 6_3:-40916413 Msa0951200:CDS
TAGTTGTCTTATGATATGTT+TGG 0.404792 6_3:-40916330 Msa0951200:CDS
TATGAACATGGTCGTGTTGA+TGG 0.405918 6_3:-40916477 Msa0951200:CDS
GTATTACCTGAGAGGTTGTT+GGG 0.414803 6_3:+40917501 None:intergenic
TGTCGGTACTCCGGTGGCGG+TGG 0.416203 6_3:-40911448 Msa0951200:CDS
GGAAGAAGGAGATGATGTTA+AGG 0.419774 6_3:-40916433 Msa0951200:CDS
TGATGCAACCAAGGCTTTGA+CGG 0.422156 6_3:+40911593 None:intergenic
TTGTACCCATAAGTCTCCTT+TGG 0.424688 6_3:-40916769 Msa0951200:CDS
TTAAGCCAAAGGAGACTTAT+GGG 0.428032 6_3:+40916764 None:intergenic
TGTCGGGTTGTTTAGGAAGA+AGG 0.431216 6_3:-40916447 Msa0951200:CDS
CATTGGCTGTTGCTGCTACT+GGG 0.433163 6_3:-40916253 Msa0951200:CDS
CCGGTTTGTAGCCAAGCTTT+TGG 0.433259 6_3:-40916857 Msa0951200:CDS
GCATCAGTCATGCCAATTAT+GGG 0.437340 6_3:-40911576 Msa0951200:CDS
TGCCGCAGCCGGTTGTTTGT+GGG 0.439861 6_3:+40911532 None:intergenic
CCATCACAAATGCACATCCT+AGG 0.440485 6_3:+40911685 None:intergenic
TGGTTCAAGATTGGGTTTAG+TGG 0.443189 6_3:-40911414 Msa0951200:CDS
GGTTCAAGATTGGGTTTAGT+GGG 0.446771 6_3:-40911413 Msa0951200:CDS
AAAGTATTTGTCAAAAGATC+AGG 0.447751 6_3:+40916662 None:intergenic
TGTTGATGGCGGGGTATGTC+GGG 0.449014 6_3:-40916463 Msa0951200:CDS
TGTTGGCCCCTATGACGGGC+CGG 0.452589 6_3:+40911493 None:intergenic
ATGTTAAGGTGGCCGGGCTG+TGG 0.452824 6_3:-40916419 Msa0951200:CDS
GTTCTCGTCGGCCTCGCCTC+CGG 0.455763 6_3:-40916887 Msa0951200:CDS
AGATGGTAAAATCACTGAAA+TGG 0.459794 6_3:-40916711 Msa0951200:CDS
ATCCTTAGATACGGATGGGC+CGG 0.461060 6_3:-40911636 Msa0951200:CDS
TTTGAATTATTTCTTGGTCA+TGG 0.462611 6_3:-40916549 Msa0951200:CDS
TGGTGTACCGGGCGTGGCGA+TGG 0.466244 6_3:-40916516 Msa0951200:CDS
CTAGGCTCATTCTACTTTGT+CGG 0.466479 6_3:-40911465 Msa0951200:CDS
TTATGATATGTTTGGAATGG+TGG 0.466680 6_3:-40916322 Msa0951200:CDS
GTTTATGTTGGCCCCTATGA+CGG 0.469488 6_3:+40911488 None:intergenic
ACCGGCTGCGGCATCCTTCG+TGG 0.473246 6_3:-40911522 Msa0951200:CDS
TTCCCTTTCACTGCAACGTA+TGG 0.474109 6_3:-40916813 Msa0951200:CDS
GGAGATGATGTTAAGGTGGC+CGG 0.475205 6_3:-40916426 Msa0951200:CDS
CAAGGTGGTGGAAGAGTTGA+AGG 0.479327 6_3:-40917062 Msa0951200:intron
TGGAAGAGTTGAAGGAACTA+TGG 0.479462 6_3:-40917054 Msa0951200:CDS
TATTATTAGAGAATGAAAAT+GGG 0.479770 6_3:-40911206 Msa0951200:CDS
TGCCCACAAACAACCGGCTG+CGG 0.483045 6_3:-40911534 Msa0951200:CDS
GCTGGTGGTGCACTGTCCAT+AGG 0.484177 6_3:-40916935 Msa0951200:CDS
AACCATACGTTGCAGTGAAA+GGG 0.486947 6_3:+40916811 None:intergenic
GGAAACTGCCCACAAACAAC+CGG 0.487726 6_3:-40911540 Msa0951200:CDS
GATGCAACCAAGGCTTTGAC+GGG 0.487761 6_3:+40911594 None:intergenic
GTCCTCTTCCTAGGTCGTCT+TGG 0.489457 6_3:-40916971 Msa0951200:CDS
ATCAAAGAGCAATACATCAT+AGG 0.491357 6_3:+40916593 None:intergenic
TCCACGAAGGATGCCGCAGC+CGG 0.492682 6_3:+40911521 None:intergenic
TGTATTACCTGAGAGGTTGT+TGG 0.493213 6_3:+40917500 None:intergenic
AATGCCAAGCCCACCGCCAC+CGG 0.493747 6_3:+40911438 None:intergenic
GTTGTGTCTGTCCTCTTCCT+AGG 0.494306 6_3:-40916980 Msa0951200:CDS
ATGGTGGTGAGTGAAGGTTT+GGG 0.494583 6_3:-40916377 Msa0951200:CDS
CTGCGGCATCCTTCGTGGAA+CGG 0.494814 6_3:-40911517 Msa0951200:CDS
GTCGGTACTCCGGTGGCGGT+GGG 0.495094 6_3:-40911447 Msa0951200:CDS
TTAAGGTGGCCGGGCTGTGG+CGG 0.495755 6_3:-40916416 Msa0951200:CDS
TGTTATGTTTGTGAAACCTA+TGG 0.495949 6_3:+40916919 None:intergenic
GAACCATACGTTGCAGTGAA+AGG 0.496358 6_3:+40916810 None:intergenic
CAAATTCCCAACAACCTCTC+AGG 0.497972 6_3:-40917507 Msa0951200:intron
CGGTGGCGGAGGAGGAATGA+TGG 0.504208 6_3:-40916396 Msa0951200:CDS
CCAAAAGCTTGGCTACAAAC+CGG 0.505315 6_3:+40916857 None:intergenic
TTTATGTTGGCCCCTATGAC+GGG 0.507071 6_3:+40911489 None:intergenic
GCATCCTTCGTGGAACGGCC+CGG 0.507307 6_3:-40911512 Msa0951200:CDS
CCTAGGATGTGCATTTGTGA+TGG 0.507768 6_3:-40911685 Msa0951200:CDS
GGTGATGCAATTTGGTGTAC+CGG 0.507862 6_3:-40916528 Msa0951200:CDS
CTAGGATGTGCATTTGTGAT+GGG 0.507899 6_3:-40911684 Msa0951200:CDS
AACATGGTCGTGTTGATGGC+GGG 0.510818 6_3:-40916473 Msa0951200:CDS
CTTGGTAGCTTAGAGCTAGC+TGG 0.513291 6_3:-40916953 Msa0951200:CDS
GTTGGCCCCTATGACGGGCC+GGG 0.518430 6_3:+40911494 None:intergenic
CGACGAGCCCGTCAAAGCCT+TGG 0.528124 6_3:-40911601 Msa0951200:CDS
CAAAGCAAAGCTAGCAGCCA+TGG 0.529649 6_3:-40911712 Msa0951200:CDS
GTCTTATGATATGTTTGGAA+TGG 0.530801 6_3:-40916325 Msa0951200:CDS
TATGGTTCTCATACTTCTCA+TGG 0.531345 6_3:-40916795 Msa0951200:CDS
CCTCCGCCACCGCCACAGCC+CGG 0.535087 6_3:+40916407 None:intergenic
TTATTTGGAGAATCCTACAT+TGG 0.539930 6_3:-40916270 Msa0951200:CDS
ATTATGGGCCTATGTGAGCT+TGG 0.544285 6_3:-40911561 Msa0951200:CDS
GTAGGGAATGAGCTTGGAGC+TGG 0.545957 6_3:-40911744 Msa0951200:CDS
ATTCTACTTTGTCGGTACTC+CGG 0.547042 6_3:-40911457 Msa0951200:CDS
TGGTGGTGAGTGAAGGTTTG+GGG 0.547979 6_3:-40916376 Msa0951200:CDS
GAAGCTAACAAAGGTAGAGA+TGG 0.549628 6_3:-40911289 Msa0951200:CDS
TACCAAGACGACCTAGGAAG+AGG 0.550713 6_3:+40916969 None:intergenic
TCCTTAGATACGGATGGGCC+GGG 0.552385 6_3:-40911635 Msa0951200:CDS
GCAATTTGGTGTACCGGGCG+TGG 0.553471 6_3:-40916522 Msa0951200:CDS
CTTTGTCGGTACTCCGGTGG+CGG 0.555744 6_3:-40911451 Msa0951200:CDS
GGTGGTGAGTGAAGGTTTGG+GGG 0.556055 6_3:-40916375 Msa0951200:CDS
GAATGAGCCTAGGTTTATGT+TGG 0.559135 6_3:+40911476 None:intergenic
CTCGTCGTTTGTGAATAGCC+CGG 0.560774 6_3:+40911617 None:intergenic
GAGATGATGTTAAGGTGGCC+GGG 0.563083 6_3:-40916425 Msa0951200:CDS
TGCACATCCTAGGGCTACCA+TGG 0.563709 6_3:+40911695 None:intergenic
CAGTGATCCTTAGATACGGA+TGG 0.564474 6_3:-40911641 Msa0951200:CDS
ATGCAGGTAGGGAATGAGCT+TGG 0.572828 6_3:-40911750 Msa0951200:intron
TGATATGTTTGGAATGGTGG+TGG 0.578373 6_3:-40916319 Msa0951200:CDS
CTAGCAGCCATGGTAGCCCT+AGG 0.583773 6_3:-40911702 Msa0951200:CDS
GTAGCAGCAACAGCCAATGT+AGG 0.587329 6_3:+40916257 None:intergenic
CATCACAAATGCACATCCTA+GGG 0.588818 6_3:+40911686 None:intergenic
ATGACCAAGAAATAATTCAA+AGG 0.595735 6_3:+40916551 None:intergenic
CCGGTTCCAGACCGGAGGCG+AGG 0.596188 6_3:+40916876 None:intergenic
GCTACAAACCGGTTCCAGAC+CGG 0.596784 6_3:+40916868 None:intergenic
CTAAGCTACCAAGACGACCT+AGG 0.602801 6_3:+40916963 None:intergenic
AAACATATCATAAGACAACT+AGG 0.608477 6_3:+40916332 None:intergenic
TGGACAGTGATCCTTAGATA+CGG 0.608816 6_3:-40911645 Msa0951200:CDS
CTACTTTGTCGGTACTCCGG+TGG 0.612688 6_3:-40911454 Msa0951200:CDS
CGACAAAGTAGAATGAGCCT+AGG 0.612818 6_3:+40911466 None:intergenic
GAAGGCAGAGAAGCTAACAA+AGG 0.613263 6_3:-40911298 Msa0951200:CDS
GGAATGATGGTGGTGAGTGA+AGG 0.617831 6_3:-40916383 Msa0951200:CDS
ATTTGTGTGAAAAGAAAACA+TGG 0.618012 6_3:+40917525 None:intergenic
GTTGAAGGAACTATGGAGCA+TGG 0.623044 6_3:-40917047 Msa0951200:CDS
TGGCATGACTGATGCAACCA+AGG 0.624708 6_3:+40911584 None:intergenic
GTGATGCAATTTGGTGTACC+GGG 0.625781 6_3:-40916527 Msa0951200:CDS
CATGTTCATATTCGTTAACA+CGG 0.627978 6_3:+40916490 None:intergenic
ATAGGGGCCAACATAAACCT+AGG 0.631284 6_3:-40911483 Msa0951200:CDS
AGTGATCCTTAGATACGGAT+GGG 0.631687 6_3:-40911640 Msa0951200:CDS
AATAACAGCTATGAACATGT+TGG 0.632625 6_3:-40917017 Msa0951200:CDS
CGTGTTAACGAATATGAACA+TGG 0.635633 6_3:-40916489 Msa0951200:CDS
ACATGGTCGTGTTGATGGCG+GGG 0.639935 6_3:-40916472 Msa0951200:CDS
AGAAGGAGATGATGTTAAGG+TGG 0.645450 6_3:-40916430 Msa0951200:CDS
TGGCGGAGGAGGAATGATGG+TGG 0.647223 6_3:-40916393 Msa0951200:CDS
GAACATGGTCGTGTTGATGG+CGG 0.657250 6_3:-40916474 Msa0951200:CDS
GGCAGTTTCCAAGCTCACAT+AGG 0.657440 6_3:+40911553 None:intergenic
CGGGCCGGGCCGTTCCACGA+AGG 0.670500 6_3:+40911508 None:intergenic
ACAAACCGGTTCCAGACCGG+AGG 0.673370 6_3:+40916871 None:intergenic
GGTAGCTTAGAGCTAGCTGG+TGG 0.676608 6_3:-40916950 Msa0951200:CDS
TAGGTTTCACAAACATAACA+GGG 0.702574 6_3:-40916916 Msa0951200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAACTAATTTTATGTATA+AGG - chr6_3:40912772-40912791 Msa0951200:intron 10.0%
!! AAAAGGTTAAAATAAAATAA+GGG + chr6_3:40913193-40913212 None:intergenic 10.0%
!! AAAAAGGTTAAAATAAAATA+AGG + chr6_3:40913194-40913213 None:intergenic 10.0%
!!! AATATGTTTTTTTTTTTGAA+AGG + chr6_3:40914330-40914349 None:intergenic 10.0%
!!! GCTTTTATATATTATTTTTT+TGG - chr6_3:40914393-40914412 Msa0951200:intron 10.0%
!!! AGTTTAAAATAAAATTTTAG+TGG - chr6_3:40914542-40914561 Msa0951200:intron 10.0%
!! TAAATATATTCAAAAATCAA+CGG + chr6_3:40914860-40914879 None:intergenic 10.0%
!!! ATTTTAGTTTTTTTTTTTGA+AGG - chr6_3:40915784-40915803 Msa0951200:intron 10.0%
!!! TTTTTTGTTTTTTTGTTTTT+TGG - chr6_3:40916009-40916028 Msa0951200:intron 10.0%
!! GAATATTTATCAACAAAAAT+GGG - chr6_3:40911218-40911237 Msa0951200:CDS 15.0%
!! AAATAGACTATCTAAATATT+TGG + chr6_3:40911656-40911675 None:intergenic 15.0%
!!! TTTAAATGTAACTACTTTTA+AGG - chr6_3:40912685-40912704 Msa0951200:intron 15.0%
!!! AATTTTTGGAAGAATAAAAT+TGG - chr6_3:40913161-40913180 Msa0951200:intron 15.0%
!!! TTTTAAAATATTTTCCACTT+AGG - chr6_3:40913289-40913308 Msa0951200:intron 15.0%
!!! TAATGATTTTGTCAAAATTA+TGG + chr6_3:40913738-40913757 None:intergenic 15.0%
!!! GTTTTTAGATAAATCAATAA+GGG + chr6_3:40914234-40914253 None:intergenic 15.0%
!! TAACTTCAACAAATTATAAA+GGG + chr6_3:40914266-40914285 None:intergenic 15.0%
!!! AAAAAATTCAGATGATTTTA+AGG + chr6_3:40915129-40915148 None:intergenic 15.0%
!! CTTAAATAGAAAAAAAAAGT+GGG + chr6_3:40915294-40915313 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr6_3:40916571-40916590 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr6_3:40916570-40916589 None:intergenic 15.0%
!! AAAGTGAAATATATTGTATT+GGG + chr6_3:40915535-40915554 None:intergenic 15.0%
!!! GATTTGATAGTTAAATTATT+TGG + chr6_3:40916279-40916298 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr6_3:40916570-40916589 Msa0951200:CDS 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr6_3:40916571-40916590 Msa0951200:CDS 15.0%
!! TTATTATTAGAGAATGAAAA+TGG - chr6_3:40917574-40917593 Msa0951200:CDS 15.0%
!! TATTATTAGAGAATGAAAAT+GGG - chr6_3:40917575-40917594 Msa0951200:CDS 15.0%
!! CGAATATTTATCAACAAAAA+TGG - chr6_3:40911217-40911236 Msa0951200:CDS 20.0%
!!! ATTTTAGTACAACACAAAAA+GGG + chr6_3:40911494-40911513 None:intergenic 20.0%
!! ATGTATCTTTCAAAAAACTA+TGG - chr6_3:40911596-40911615 Msa0951200:CDS 20.0%
!!! TTGAGATATTTTTGTAATTC+TGG + chr6_3:40912859-40912878 None:intergenic 20.0%
!! CTAACAAAGAAATATATTTG+AGG + chr6_3:40912907-40912926 None:intergenic 20.0%
!!! TTTTTGGCTTATAAAGAAAA+AGG + chr6_3:40913210-40913229 None:intergenic 20.0%
!!! CGATTTTTGTATTTTAATGT+TGG - chr6_3:40913246-40913265 Msa0951200:intron 20.0%
!! AAAAAGAAGAAGAAAGAAAT+TGG + chr6_3:40913535-40913554 None:intergenic 20.0%
!! AAATACAACTAAAGTATGTT+TGG + chr6_3:40913818-40913837 None:intergenic 20.0%
!! TAAATCAATAAGGGTAAAAT+TGG + chr6_3:40914225-40914244 None:intergenic 20.0%
!!! GGTTTTTAGATAAATCAATA+AGG + chr6_3:40914235-40914254 None:intergenic 20.0%
!! AACTTCAACAAATTATAAAG+GGG + chr6_3:40914265-40914284 None:intergenic 20.0%
!! GTAACTTCAACAAATTATAA+AGG + chr6_3:40914267-40914286 None:intergenic 20.0%
!! AGTCGAAACAAAATATATAA+AGG + chr6_3:40914289-40914308 None:intergenic 20.0%
!!! TATATATTATTTTTTTGGGC+TGG - chr6_3:40914398-40914417 Msa0951200:intron 20.0%
!!! ATATTGTTACGCTTTTTTTA+AGG - chr6_3:40914434-40914453 Msa0951200:intron 20.0%
!!! TATTGTTACGCTTTTTTTAA+GGG - chr6_3:40914435-40914454 Msa0951200:intron 20.0%
!! TAAATGTAAAATGACACAAA+AGG + chr6_3:40914713-40914732 None:intergenic 20.0%
!!! TTTCAGATAATTTTAGTGTA+GGG + chr6_3:40915056-40915075 None:intergenic 20.0%
!!! TTTTCAGATAATTTTAGTGT+AGG + chr6_3:40915057-40915076 None:intergenic 20.0%
!! CCTTAAATAGAAAAAAAAAG+TGG + chr6_3:40915295-40915314 None:intergenic 20.0%
!!! CCACTTTTTTTTTCTATTTA+AGG - chr6_3:40915292-40915311 Msa0951200:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr6_3:40916640-40916659 None:intergenic 20.0%
!! GAAAGTGAAATATATTGTAT+TGG + chr6_3:40915536-40915555 None:intergenic 20.0%
!! AATAAATGTAACAAGTTCTT+AGG + chr6_3:40915764-40915783 None:intergenic 20.0%
!!! AAAGTAAAAACAACTACTTT+TGG + chr6_3:40915906-40915925 None:intergenic 20.0%
!! AACAAAAAAACAAAGATTCA+GGG + chr6_3:40915998-40916017 None:intergenic 20.0%
!! AAACAAAAAAACAAAGATTC+AGG + chr6_3:40915999-40916018 None:intergenic 20.0%
!!! AATCTTTGATCTTTTTTCTT+TGG - chr6_3:40916038-40916057 Msa0951200:intron 20.0%
!!! TTTCTTTTTTACATTCCTTT+TGG - chr6_3:40916061-40916080 Msa0951200:intron 20.0%
!!! TTCTTTTTTACATTCCTTTT+GGG - chr6_3:40916062-40916081 Msa0951200:intron 20.0%
!! CTAAAACCAAATATAATTGT+GGG + chr6_3:40916330-40916349 None:intergenic 20.0%
!!! CACAATTATATTTGGTTTTA+GGG - chr6_3:40916329-40916348 Msa0951200:CDS 20.0%
!!! TAAGAAAAGAGTATAAATGA+AGG - chr6_3:40916505-40916524 Msa0951200:CDS 20.0%
!!! AAGAAAAGAGTATAAATGAA+GGG - chr6_3:40916506-40916525 Msa0951200:CDS 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr6_3:40916530-40916549 Msa0951200:CDS 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr6_3:40916603-40916622 Msa0951200:CDS 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr6_3:40916604-40916623 Msa0951200:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr6_3:40916640-40916659 Msa0951200:CDS 20.0%
!! CATTATAATAAATTTCATGC+AGG + chr6_3:40916982-40917001 None:intergenic 20.0%
!! CTGCATGAAATTTATTATAA+TGG - chr6_3:40916980-40916999 Msa0951200:CDS 20.0%
!!! ATTTTCAATTCAATAAATGC+AGG - chr6_3:40917015-40917034 Msa0951200:CDS 20.0%
!! TTGTGATTATAAAAACTGAT+TGG - chr6_3:40917446-40917465 Msa0951200:intron 20.0%
!! TGTGATTATAAAAACTGATT+GGG - chr6_3:40917447-40917466 Msa0951200:intron 20.0%
! ATTTGTGTGAAAAGAAAACA+TGG + chr6_3:40911259-40911278 None:intergenic 25.0%
!!! TTTTTTTTGTATTACCTGAG+AGG + chr6_3:40911291-40911310 None:intergenic 25.0%
!!! CATTTTAGTACAACACAAAA+AGG + chr6_3:40911495-40911514 None:intergenic 25.0%
! TTTCATCTATATTGTATGCT+TGG - chr6_3:40911538-40911557 Msa0951200:CDS 25.0%
!!! TTTTTTGAAAGATACATCAG+TGG + chr6_3:40911593-40911612 None:intergenic 25.0%
! TATCTTTCAAAAAACTATGG+TGG - chr6_3:40911599-40911618 Msa0951200:CDS 25.0%
!!! TGAAAAGCATGATTTTTTCA+AGG + chr6_3:40912043-40912062 None:intergenic 25.0%
!! TGAAAAAATCATGCTTTTCA+TGG - chr6_3:40912043-40912062 Msa0951200:intron 25.0%
!! GAAAAAATCATGCTTTTCAT+GGG - chr6_3:40912044-40912063 Msa0951200:intron 25.0%
!! AAAGTATTTGTCAAAAGATC+AGG + chr6_3:40912122-40912141 None:intergenic 25.0%
! ATGACCAAGAAATAATTCAA+AGG + chr6_3:40912233-40912252 None:intergenic 25.0%
!! TTTGAATTATTTCTTGGTCA+TGG - chr6_3:40912232-40912251 Msa0951200:intron 25.0%
! AAACATATCATAAGACAACT+AGG + chr6_3:40912452-40912471 None:intergenic 25.0%
! TAGTTGTCTTATGATATGTT+TGG - chr6_3:40912451-40912470 Msa0951200:intron 25.0%
!!! TTAATTTTGATGCATTATCG+TGG + chr6_3:40912756-40912775 None:intergenic 25.0%
! CACTATGTCAAATTTATCAT+GGG - chr6_3:40913090-40913109 Msa0951200:intron 25.0%
!!! ATGTGTACTTTTTTGTTTTG+AGG - chr6_3:40913118-40913137 Msa0951200:intron 25.0%
!!! TGTGTACTTTTTTGTTTTGA+GGG - chr6_3:40913119-40913138 Msa0951200:intron 25.0%
!! TTATTGCTAACAAAGCTTTT+TGG + chr6_3:40913226-40913245 None:intergenic 25.0%
!! AAAATATTTTCCACTTAGGT+TGG - chr6_3:40913293-40913312 Msa0951200:intron 25.0%
! CATGACCAAAAAATTTGATT+TGG - chr6_3:40913488-40913507 Msa0951200:intron 25.0%
!!! AGTGACCAAATCAAATTTTT+TGG + chr6_3:40913496-40913515 None:intergenic 25.0%
! ATATACACTGGAAAATTCTT+GGG + chr6_3:40913643-40913662 None:intergenic 25.0%
! AATATACACTGGAAAATTCT+TGG + chr6_3:40913644-40913663 None:intergenic 25.0%
! AAATTATAAAGGGGTAGAAT+TGG + chr6_3:40914256-40914275 None:intergenic 25.0%
!!! AAATTCAGATGATTTTAAGG+TGG + chr6_3:40915126-40915145 None:intergenic 25.0%
! CTGTATCTAGTTAAGAAATA+TGG - chr6_3:40915196-40915215 Msa0951200:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr6_3:40916639-40916658 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr6_3:40915447-40915466 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr6_3:40915448-40915467 None:intergenic 25.0%
!!! ATGAATTAGTTCTAGTTTTG+TGG + chr6_3:40916193-40916212 None:intergenic 25.0%
! CCTAAAACCAAATATAATTG+TGG + chr6_3:40916331-40916350 None:intergenic 25.0%
!!! CCACAATTATATTTGGTTTT+AGG - chr6_3:40916328-40916347 Msa0951200:CDS 25.0%
!! AGAAAAGAGTATAAATGAAG+GGG - chr6_3:40916507-40916526 Msa0951200:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr6_3:40916529-40916548 Msa0951200:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr6_3:40916639-40916658 Msa0951200:CDS 25.0%
!!! ATCTCTTTTTAACTTAACCA+AGG - chr6_3:40916718-40916737 Msa0951200:CDS 25.0%
! AAGAAAAATGAAGAATGCAA+GGG - chr6_3:40917550-40917569 Msa0951200:CDS 25.0%
ATGTTTGATATCAGAGTAGT+AGG - chr6_3:40911350-40911369 Msa0951200:CDS 30.0%
!!! TTGATGCAAACTTTTTCACA+AGG - chr6_3:40911701-40911720 Msa0951200:CDS 30.0%
AACATGTTCATAGCTGTTAT+TGG + chr6_3:40911765-40911784 None:intergenic 30.0%
AATAACAGCTATGAACATGT+TGG - chr6_3:40911764-40911783 Msa0951200:intron 30.0%
TGTTATGTTTGTGAAACCTA+TGG + chr6_3:40911865-40911884 None:intergenic 30.0%
ATAGGTTTCACAAACATAAC+AGG - chr6_3:40911864-40911883 Msa0951200:intron 30.0%
TAGGTTTCACAAACATAACA+GGG - chr6_3:40911865-40911884 Msa0951200:intron 30.0%
!!! TTTTTTCAAGGTTAAGCCAA+AGG + chr6_3:40912031-40912050 None:intergenic 30.0%
AGATGGTAAAATCACTGAAA+TGG - chr6_3:40912070-40912089 Msa0951200:intron 30.0%
!!! AACCTTTGAGAGTGTTTTTA+AGG - chr6_3:40912147-40912166 Msa0951200:intron 30.0%
ATCAAAGAGCAATACATCAT+AGG + chr6_3:40912191-40912210 None:intergenic 30.0%
! TGTGCCTTTGAATTATTTCT+TGG - chr6_3:40912226-40912245 Msa0951200:intron 30.0%
CATGTTCATATTCGTTAACA+CGG + chr6_3:40912294-40912313 None:intergenic 30.0%
GTCTTATGATATGTTTGGAA+TGG - chr6_3:40912456-40912475 Msa0951200:intron 30.0%
! TTATGATATGTTTGGAATGG+TGG - chr6_3:40912459-40912478 Msa0951200:intron 30.0%
! GTATGAGATTGTTACTGTTT+TGG - chr6_3:40912484-40912503 Msa0951200:intron 30.0%
TTATTTGGAGAATCCTACAT+TGG - chr6_3:40912511-40912530 Msa0951200:intron 30.0%
! TTGTAATTCTGGTTAACTCA+AGG + chr6_3:40912848-40912867 None:intergenic 30.0%
AAACCGATCAAACTAACTAA+CGG + chr6_3:40912969-40912988 None:intergenic 30.0%
CCATGATAAATTTGACATAG+TGG + chr6_3:40913092-40913111 None:intergenic 30.0%
CCACTATGTCAAATTTATCA+TGG - chr6_3:40913089-40913108 Msa0951200:intron 30.0%
!!! TTTGTTTTGAGGGACTATAT+TGG - chr6_3:40913129-40913148 Msa0951200:intron 30.0%
! ATTGGATGTTGCGTAATTTT+TGG - chr6_3:40913147-40913166 Msa0951200:intron 30.0%
ACTGAAAATAGTGAGAGAAA+TGG - chr6_3:40913353-40913372 Msa0951200:intron 30.0%
! TTCTACATGACTAGATGTTT+TGG - chr6_3:40913403-40913422 Msa0951200:intron 30.0%
TGTGACCAAATTCATATTCA+TGG - chr6_3:40913607-40913626 Msa0951200:intron 30.0%
TTGGACCATGAATATGAATT+TGG + chr6_3:40913615-40913634 None:intergenic 30.0%
CTGTGATACTAAATATACAC+TGG + chr6_3:40913655-40913674 None:intergenic 30.0%
CAGTGTATATTTAGTATCAC+AGG - chr6_3:40913653-40913672 Msa0951200:intron 30.0%
GTATATTTAGTATCACAGGA+TGG - chr6_3:40913657-40913676 Msa0951200:intron 30.0%
! ATAAGCTAAAAGCTCTTTTG+AGG + chr6_3:40914044-40914063 None:intergenic 30.0%
! TGACAAAAAATAGCTCTGTT+TGG - chr6_3:40914087-40914106 Msa0951200:intron 30.0%
! GAAGTGTTTGGTAAAATTAG+CGG + chr6_3:40914749-40914768 None:intergenic 30.0%
! GATAAGCTAATTGAAGTGTT+TGG + chr6_3:40914761-40914780 None:intergenic 30.0%
TTCAAAAATCAACGGTAGTA+AGG + chr6_3:40914852-40914871 None:intergenic 30.0%
! CATCAAAGACACATTTTCAA+TGG + chr6_3:40914968-40914987 None:intergenic 30.0%
AGCTACATCATAGTATGTTA+GGG + chr6_3:40915003-40915022 None:intergenic 30.0%
TAGCTACATCATAGTATGTT+AGG + chr6_3:40915004-40915023 None:intergenic 30.0%
ATTGTTGGAAACAACACTAA+AGG + chr6_3:40915335-40915354 None:intergenic 30.0%
AAATTGAGATCCTTGATTGT+TGG + chr6_3:40915350-40915369 None:intergenic 30.0%
!! TGAAGTGCAATTCTAGTTTA+AGG + chr6_3:40915660-40915679 None:intergenic 30.0%
AAGAATGTAACAACAGTTAC+TGG + chr6_3:40915699-40915718 None:intergenic 30.0%
AATGTAACAAGTTCTTAGGA+AGG + chr6_3:40915760-40915779 None:intergenic 30.0%
! TAGAAAAGTAGGGTTCTTTT+GGG + chr6_3:40916301-40916320 None:intergenic 30.0%
! CTCATATCCTAATGTTTTGT+TGG - chr6_3:40916378-40916397 Msa0951200:CDS 30.0%
!! TCCTAATGTTTTGTTGGTTA+TGG - chr6_3:40916384-40916403 Msa0951200:CDS 30.0%
ACCATAACCAACAAAACATT+AGG + chr6_3:40916388-40916407 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr6_3:40916617-40916636 Msa0951200:CDS 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr6_3:40916618-40916637 Msa0951200:CDS 30.0%
!! AACTGTTTGATATCGATTCA+TGG - chr6_3:40916846-40916865 Msa0951200:CDS 30.0%
TCAATTCAATAAATGCAGGT+AGG - chr6_3:40917019-40917038 Msa0951200:CDS 30.0%
CAATTCAATAAATGCAGGTA+GGG - chr6_3:40917020-40917039 Msa0951200:CDS 30.0%
!! TGGGTTTTATCAATGTAACA+TGG - chr6_3:40917116-40917135 Msa0951200:intron 30.0%
GAAGAAAAATGAAGAATGCA+AGG - chr6_3:40917549-40917568 Msa0951200:CDS 30.0%
TATCAGAGTAGTAGGTTACA+AGG - chr6_3:40911358-40911377 Msa0951200:CDS 35.0%
!!! GGTTACAAGGTTTTGTTACT+AGG - chr6_3:40911371-40911390 Msa0951200:CDS 35.0%
ATTCTGACAAAAGCTGCATA+TGG + chr6_3:40911419-40911438 None:intergenic 35.0%
!!! ATGCAAACTTTTTCACAAGG+TGG - chr6_3:40911704-40911723 Msa0951200:CDS 35.0%
! AGTTTTTGCTACCAAAAGCT+TGG + chr6_3:40911938-40911957 None:intergenic 35.0%
!! AAGCTTTTGGTAGCAAAAAC+TGG - chr6_3:40911937-40911956 Msa0951200:intron 35.0%
!! AGCTTTTGGTAGCAAAAACT+GGG - chr6_3:40911938-40911957 Msa0951200:intron 35.0%
TATGGTTCTCATACTTCTCA+TGG - chr6_3:40911986-40912005 Msa0951200:intron 35.0%
TTAAGCCAAAGGAGACTTAT+GGG + chr6_3:40912020-40912039 None:intergenic 35.0%
GACCTTAAAAACACTCTCAA+AGG + chr6_3:40912152-40912171 None:intergenic 35.0%
CGTGTTAACGAATATGAACA+TGG - chr6_3:40912292-40912311 Msa0951200:intron 35.0%
!!! TACTGTTTTGGCTGGTTATT+TGG - chr6_3:40912496-40912515 Msa0951200:intron 35.0%
TATGATGTATACTGTCCCTA+TGG - chr6_3:40912571-40912590 Msa0951200:intron 35.0%
ATCTCAAAATGTGTCTCGTT+TGG - chr6_3:40912872-40912891 Msa0951200:intron 35.0%
! CTTCCGTTAGTTAGTTTGAT+CGG - chr6_3:40912963-40912982 Msa0951200:intron 35.0%
!!! TTTTCCACTTAGGTTGGTAT+TGG - chr6_3:40913299-40913318 Msa0951200:intron 35.0%
!! TTTCCACTTAGGTTGGTATT+GGG - chr6_3:40913300-40913319 Msa0951200:intron 35.0%
AAATAGTGAGAGAAATGGAG+TGG - chr6_3:40913358-40913377 Msa0951200:intron 35.0%
!!! GACTAGATGTTTTGGCAATT+TGG - chr6_3:40913411-40913430 Msa0951200:intron 35.0%
ACGGTAAAGTGTATATGAGA+AGG - chr6_3:40913452-40913471 Msa0951200:intron 35.0%
GAAAGAAATTGGCAATGCTT+TGG + chr6_3:40913524-40913543 None:intergenic 35.0%
! TTTTCTCTCTCTCATTGTTG+TGG - chr6_3:40913564-40913583 Msa0951200:intron 35.0%
TTTCTCTCTCTCATTGTTGT+GGG - chr6_3:40913565-40913584 Msa0951200:intron 35.0%
!! ATGAGATGTGATTGGTTCTA+CGG - chr6_3:40913952-40913971 Msa0951200:intron 35.0%
CATCTCTGTAGTAGTTACTT+AGG - chr6_3:40914003-40914022 Msa0951200:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG - chr6_3:40914124-40914143 Msa0951200:intron 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr6_3:40914830-40914849 None:intergenic 35.0%
GAAAATGTGTCTTTGATGCA+CGG - chr6_3:40914970-40914989 Msa0951200:intron 35.0%
!! AGTGTTGTTTCCAACAATCA+AGG - chr6_3:40915337-40915356 Msa0951200:intron 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr6_3:40915412-40915431 None:intergenic 35.0%
GCACTTCAAAAAAATGCACT+TGG - chr6_3:40915672-40915691 Msa0951200:intron 35.0%
AAGTTCTTAGGAAGGAATCA+TGG + chr6_3:40915752-40915771 None:intergenic 35.0%
AAAATCTCCACACGTGTATT+TGG + chr6_3:40915948-40915967 None:intergenic 35.0%
CATGATTGCATCAAGTACAA+AGG - chr6_3:40916132-40916151 Msa0951200:intron 35.0%
AAATGTGACCTAACTGCATT+GGG + chr6_3:40916159-40916178 None:intergenic 35.0%
! CTAGAAAAGTAGGGTTCTTT+TGG + chr6_3:40916302-40916321 None:intergenic 35.0%
!! AAAGAACCCTACTTTTCTAG+TGG - chr6_3:40916302-40916321 Msa0951200:CDS 35.0%
!! AAGAACCCTACTTTTCTAGT+GGG - chr6_3:40916303-40916322 Msa0951200:CDS 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr6_3:40916470-40916489 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr6_3:40916471-40916490 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr6_3:40916484-40916503 None:intergenic 35.0%
AGTATAAATGAAGGGGAAAG+TGG - chr6_3:40916514-40916533 Msa0951200:CDS 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr6_3:40916653-40916672 Msa0951200:CDS 35.0%
CAGCGTTAAAACAACTCTTA+GGG - chr6_3:40916767-40916786 Msa0951200:CDS 35.0%
!!! TTGGCATTTTGGTTCAAGAT+TGG - chr6_3:40917358-40917377 Msa0951200:intron 35.0%
!!! TGGCATTTTGGTTCAAGATT+GGG - chr6_3:40917359-40917378 Msa0951200:intron 35.0%
GTATTACCTGAGAGGTTGTT+GGG + chr6_3:40911283-40911302 None:intergenic 40.0%
TGTATTACCTGAGAGGTTGT+TGG + chr6_3:40911284-40911303 None:intergenic 40.0%
CTGCATGTTTGGTATCATAG+TGG + chr6_3:40911465-40911484 None:intergenic 40.0%
AAGGGATATGTCTGCATGTT+TGG + chr6_3:40911476-40911495 None:intergenic 40.0%
! ACATGTAGTTTGCCAGAATC+TGG + chr6_3:40911629-40911648 None:intergenic 40.0%
!!! CAAACTTTTTCACAAGGTGG+TGG - chr6_3:40911707-40911726 Msa0951200:CDS 40.0%
TGGAAGAGTTGAAGGAACTA+TGG - chr6_3:40911727-40911746 Msa0951200:CDS 40.0%
AACCATACGTTGCAGTGAAA+GGG + chr6_3:40911973-40911992 None:intergenic 40.0%
TTGTACCCATAAGTCTCCTT+TGG - chr6_3:40912012-40912031 Msa0951200:intron 40.0%
GTTAAGCCAAAGGAGACTTA+TGG + chr6_3:40912021-40912040 None:intergenic 40.0%
! ATGCTTTTCATGGGACAAGA+TGG - chr6_3:40912053-40912072 Msa0951200:intron 40.0%
! TTGGTCATGGTGATGCAATT+TGG - chr6_3:40912245-40912264 Msa0951200:intron 40.0%
TATGAACATGGTCGTGTTGA+TGG - chr6_3:40912304-40912323 Msa0951200:intron 40.0%
GGAAGAAGGAGATGATGTTA+AGG - chr6_3:40912348-40912367 Msa0951200:intron 40.0%
AGAAGGAGATGATGTTAAGG+TGG - chr6_3:40912351-40912370 Msa0951200:intron 40.0%
!! TTTGGGGGAGTTGATGAAAT+TGG - chr6_3:40912421-40912440 Msa0951200:intron 40.0%
! TGATATGTTTGGAATGGTGG+TGG - chr6_3:40912462-40912481 Msa0951200:intron 40.0%
!!! GAGATTGTTACTGTTTTGGC+TGG - chr6_3:40912488-40912507 Msa0951200:intron 40.0%
GATTGCGATTTAGCAACATG+CGG - chr6_3:40912721-40912740 Msa0951200:intron 40.0%
! GCTTCTCGATGTTAGTTTGA+CGG - chr6_3:40913433-40913452 Msa0951200:intron 40.0%
GTATATGAGAAGGTCTTACG+TGG - chr6_3:40913462-40913481 Msa0951200:intron 40.0%
TTCTCTCTCTCATTGTTGTG+GGG - chr6_3:40913566-40913585 Msa0951200:intron 40.0%
TACACTGGAAAATTCTTGGG+TGG + chr6_3:40913640-40913659 None:intergenic 40.0%
GTAGTTACTTAGGCTCTGTT+TGG - chr6_3:40914013-40914032 Msa0951200:intron 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr6_3:40915411-40915430 None:intergenic 40.0%
AATCTGTGTGAAATGAGCCA+AGG - chr6_3:40915579-40915598 Msa0951200:intron 40.0%
ATCTGTGTGAAATGAGCCAA+GGG - chr6_3:40915580-40915599 Msa0951200:intron 40.0%
AGCCAAGGGGTCAAATAAAT+TGG - chr6_3:40915594-40915613 Msa0951200:intron 40.0%
GCCAAGGGGTCAAATAAATT+GGG - chr6_3:40915595-40915614 Msa0951200:intron 40.0%
TCCCAATTTATTTGACCCCT+TGG + chr6_3:40915599-40915618 None:intergenic 40.0%
AGGGGTCAAATAAATTGGGA+CGG - chr6_3:40915599-40915618 Msa0951200:intron 40.0%
GTCAAATAAATTGGGACGGA+GGG - chr6_3:40915603-40915622 Msa0951200:intron 40.0%
! CAATGCAGCATGTTTTCTGT+AGG + chr6_3:40915723-40915742 None:intergenic 40.0%
ACGTGTATTTGGCATCTGAT+TGG + chr6_3:40915937-40915956 None:intergenic 40.0%
! GGATTTACGTTTTGCCCAAA+AGG + chr6_3:40916079-40916098 None:intergenic 40.0%
AACAAACCAATACCTCAGCA+AGG + chr6_3:40916111-40916130 None:intergenic 40.0%
CAAATGTGACCTAACTGCAT+TGG + chr6_3:40916160-40916179 None:intergenic 40.0%
CTTGTAAGTGCATTTCTGCT+TGG - chr6_3:40916215-40916234 Msa0951200:intron 40.0%
!! AGAACCCTACTTTTCTAGTG+GGG - chr6_3:40916304-40916323 Msa0951200:CDS 40.0%
CCGGTATAATTGACCTACTT+TGG - chr6_3:40916468-40916487 Msa0951200:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr6_3:40916654-40916673 Msa0951200:CDS 40.0%
ACATGCTCGGATTCAAATTC+AGG + chr6_3:40916745-40916764 None:intergenic 40.0%
! TTTTAACGCTGCTACATGCT+CGG + chr6_3:40916758-40916777 None:intergenic 40.0%
GCAGCGTTAAAACAACTCTT+AGG - chr6_3:40916766-40916785 Msa0951200:CDS 40.0%
CATCACAAATGCACATCCTA+GGG + chr6_3:40917098-40917117 None:intergenic 40.0%
CTAGGATGTGCATTTGTGAT+GGG - chr6_3:40917097-40917116 Msa0951200:intron 40.0%
TGGACAGTGATCCTTAGATA+CGG - chr6_3:40917136-40917155 Msa0951200:intron 40.0%
AGTGATCCTTAGATACGGAT+GGG - chr6_3:40917141-40917160 Msa0951200:intron 40.0%
TGCATCAGTCATGCCAATTA+TGG - chr6_3:40917204-40917223 Msa0951200:intron 40.0%
GCATCAGTCATGCCAATTAT+GGG - chr6_3:40917205-40917224 Msa0951200:intron 40.0%
GAATGAGCCTAGGTTTATGT+TGG + chr6_3:40917308-40917327 None:intergenic 40.0%
CTAGGCTCATTCTACTTTGT+CGG - chr6_3:40917316-40917335 Msa0951200:intron 40.0%
ATTCTACTTTGTCGGTACTC+CGG - chr6_3:40917324-40917343 Msa0951200:intron 40.0%
TGGTTCAAGATTGGGTTTAG+TGG - chr6_3:40917367-40917386 Msa0951200:intron 40.0%
GGTTCAAGATTGGGTTTAGT+GGG - chr6_3:40917368-40917387 Msa0951200:intron 40.0%
AAAAACTGATTGGGAAGCTG+AGG - chr6_3:40917456-40917475 Msa0951200:intron 40.0%
GAAGCTAACAAAGGTAGAGA+TGG - chr6_3:40917492-40917511 Msa0951200:intron 40.0%
CAAATTCCCAACAACCTCTC+AGG - chr6_3:40911274-40911293 Msa0951200:CDS 45.0%
ACATCAGTGGCTCATGATTC+TGG + chr6_3:40911580-40911599 None:intergenic 45.0%
TATGGTGGCTTTCCAGATTC+TGG - chr6_3:40911614-40911633 Msa0951200:CDS 45.0%
GTTGAAGGAACTATGGAGCA+TGG - chr6_3:40911734-40911753 Msa0951200:CDS 45.0%
CCAAAAGCTTGGCTACAAAC+CGG + chr6_3:40911927-40911946 None:intergenic 45.0%
TTCCCTTTCACTGCAACGTA+TGG - chr6_3:40911968-40911987 Msa0951200:intron 45.0%
GAACCATACGTTGCAGTGAA+AGG + chr6_3:40911974-40911993 None:intergenic 45.0%
!! GGTGATGCAATTTGGTGTAC+CGG - chr6_3:40912253-40912272 Msa0951200:intron 45.0%
!! GTGATGCAATTTGGTGTACC+GGG - chr6_3:40912254-40912273 Msa0951200:intron 45.0%
! TGTCGGGTTGTTTAGGAAGA+AGG - chr6_3:40912334-40912353 Msa0951200:intron 45.0%
! ATGGTGGTGAGTGAAGGTTT+GGG - chr6_3:40912404-40912423 Msa0951200:intron 45.0%
!! CACTTAGGTTGGTATTGGGT+GGG - chr6_3:40913304-40913323 Msa0951200:intron 45.0%
!! ACTTAGGTTGGTATTGGGTG+GGG - chr6_3:40913305-40913324 Msa0951200:intron 45.0%
!! GTGGGGTGTCATTCATTGAT+TGG - chr6_3:40913583-40913602 Msa0951200:intron 45.0%
GGAAAATTCTTGGGTGGTCT+TGG + chr6_3:40913634-40913653 None:intergenic 45.0%
CGTTGTCGCTGTAATGTTTC+TGG + chr6_3:40913863-40913882 None:intergenic 45.0%
GAACCAATCACATCTCATGC+TGG + chr6_3:40913950-40913969 None:intergenic 45.0%
!! TGATTGGTTCTACGGCAGTT+TGG - chr6_3:40913960-40913979 Msa0951200:intron 45.0%
!! GATTGGTTCTACGGCAGTTT+GGG - chr6_3:40913961-40913980 Msa0951200:intron 45.0%
AACGGTAGTAAGGCTCTGTT+TGG + chr6_3:40914842-40914861 None:intergenic 45.0%
ATATAATACTCCCTCCGTCC+CGG - chr6_3:40915390-40915409 Msa0951200:intron 45.0%
TCTGTGTGAAATGAGCCAAG+GGG - chr6_3:40915581-40915600 Msa0951200:intron 45.0%
GGTCAAATAAATTGGGACGG+AGG - chr6_3:40915602-40915621 Msa0951200:intron 45.0%
TCAGATGCCAAATACACGTG+TGG - chr6_3:40915938-40915957 Msa0951200:intron 45.0%
!! TCCTTAGTTTGTCCTTGCTG+AGG - chr6_3:40916096-40916115 Msa0951200:intron 45.0%
ACCTCAGCAAGGACAAACTA+AGG + chr6_3:40916100-40916119 None:intergenic 45.0%
GTTTGTCCTTGCTGAGGTAT+TGG - chr6_3:40916102-40916121 Msa0951200:intron 45.0%
ACAAAGGTCCCAATGCAGTT+AGG - chr6_3:40916148-40916167 Msa0951200:intron 45.0%
!! CATTTCTGCTTGGCTTGCAT+AGG - chr6_3:40916225-40916244 Msa0951200:CDS 45.0%
GTGGGGCCCACAATTATATT+TGG - chr6_3:40916321-40916340 Msa0951200:CDS 45.0%
ATTTAATACTCCCTCCGTCC+CGG - chr6_3:40916449-40916468 Msa0951200:CDS 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr6_3:40916466-40916485 None:intergenic 45.0%
CGGATTCAAATTCAGGACCT+TGG + chr6_3:40916738-40916757 None:intergenic 45.0%
!! GCTGCTAGCTTTGCTTTGTA+TGG + chr6_3:40917067-40917086 None:intergenic 45.0%
CCATCACAAATGCACATCCT+AGG + chr6_3:40917099-40917118 None:intergenic 45.0%
CCTAGGATGTGCATTTGTGA+TGG - chr6_3:40917096-40917115 Msa0951200:intron 45.0%
CAGTGATCCTTAGATACGGA+TGG - chr6_3:40917140-40917159 Msa0951200:intron 45.0%
! TGATGCAACCAAGGCTTTGA+CGG + chr6_3:40917191-40917210 None:intergenic 45.0%
AGCTCACATAGGCCCATAAT+TGG + chr6_3:40917220-40917239 None:intergenic 45.0%
ATTATGGGCCTATGTGAGCT+TGG - chr6_3:40917220-40917239 Msa0951200:intron 45.0%
TTTATGTTGGCCCCTATGAC+GGG + chr6_3:40917295-40917314 None:intergenic 45.0%
GTTTATGTTGGCCCCTATGA+CGG + chr6_3:40917296-40917315 None:intergenic 45.0%
ATAGGGGCCAACATAAACCT+AGG - chr6_3:40917298-40917317 Msa0951200:intron 45.0%
CGACAAAGTAGAATGAGCCT+AGG + chr6_3:40917318-40917337 None:intergenic 45.0%
!! AGATTGGGTTTAGTGGGCTT+TGG - chr6_3:40917374-40917393 Msa0951200:intron 45.0%
!! GGTTTAGTGGGCTTTGGTTT+GGG - chr6_3:40917380-40917399 Msa0951200:intron 45.0%
! TGGGCTTTTATCTGCACAAG+TGG - chr6_3:40917399-40917418 Msa0951200:intron 45.0%
GAAGGCAGAGAAGCTAACAA+AGG - chr6_3:40917483-40917502 Msa0951200:intron 45.0%
!!! CTTTTATATATTATTTTTTT+GGG - chr6_3:40914394-40914413 Msa0951200:intron 5.0%
!!! TTTAATTATTCTAAATATTT+TGG - chr6_3:40914630-40914649 Msa0951200:intron 5.0%
!! CAAGGTGGTGGAAGAGTTGA+AGG - chr6_3:40911719-40911738 Msa0951200:CDS 50.0%
GTTGTGTCTGTCCTCTTCCT+AGG - chr6_3:40911801-40911820 Msa0951200:intron 50.0%
TACCAAGACGACCTAGGAAG+AGG + chr6_3:40911815-40911834 None:intergenic 50.0%
CTAAGCTACCAAGACGACCT+AGG + chr6_3:40911821-40911840 None:intergenic 50.0%
! CTTGGTAGCTTAGAGCTAGC+TGG - chr6_3:40911828-40911847 Msa0951200:intron 50.0%
! ACAGGGTACTCTGTTCTCGT+CGG - chr6_3:40911882-40911901 Msa0951200:intron 50.0%
!! CCGGTTTGTAGCCAAGCTTT+TGG - chr6_3:40911924-40911943 Msa0951200:intron 50.0%
! GAACATGGTCGTGTTGATGG+CGG - chr6_3:40912307-40912326 Msa0951200:intron 50.0%
!! AACATGGTCGTGTTGATGGC+GGG - chr6_3:40912308-40912327 Msa0951200:intron 50.0%
GGAGATGATGTTAAGGTGGC+CGG - chr6_3:40912355-40912374 Msa0951200:intron 50.0%
GAGATGATGTTAAGGTGGCC+GGG - chr6_3:40912356-40912375 Msa0951200:intron 50.0%
!! GGAATGATGGTGGTGAGTGA+AGG - chr6_3:40912398-40912417 Msa0951200:intron 50.0%
! GATGGTGGTGAGTGAAGGTT+TGG - chr6_3:40912403-40912422 Msa0951200:intron 50.0%
! TGGTGGTGAGTGAAGGTTTG+GGG - chr6_3:40912405-40912424 Msa0951200:intron 50.0%
GTAGCAGCAACAGCCAATGT+AGG + chr6_3:40912527-40912546 None:intergenic 50.0%
! ACATTGGCTGTTGCTGCTAC+TGG - chr6_3:40912527-40912546 Msa0951200:intron 50.0%
! CATTGGCTGTTGCTGCTACT+GGG - chr6_3:40912528-40912547 Msa0951200:intron 50.0%
CCACCCAATACCAACCTAAG+TGG + chr6_3:40913306-40913325 None:intergenic 50.0%
!! CCACTTAGGTTGGTATTGGG+TGG - chr6_3:40913303-40913322 Msa0951200:intron 50.0%
GTGAGAGAAATGGAGTGGCA+TGG - chr6_3:40913363-40913382 Msa0951200:intron 50.0%
TTACAGCGACAACGTCACGA+AGG - chr6_3:40913869-40913888 Msa0951200:intron 50.0%
AAAACGGGAAGATGGGGTAG+TGG + chr6_3:40913921-40913940 None:intergenic 50.0%
CCGGAAAAAACGGGAAGATG+GGG + chr6_3:40913927-40913946 None:intergenic 50.0%
!!! CCCCATCTTCCCGTTTTTTC+CGG - chr6_3:40913924-40913943 Msa0951200:intron 50.0%
GCCGGAAAAAACGGGAAGAT+GGG + chr6_3:40913928-40913947 None:intergenic 50.0%
TCATGCTGGCCGGAAAAAAC+GGG + chr6_3:40913936-40913955 None:intergenic 50.0%
CTCATGCTGGCCGGAAAAAA+CGG + chr6_3:40913937-40913956 None:intergenic 50.0%
CAATCACATCTCATGCTGGC+CGG + chr6_3:40913946-40913965 None:intergenic 50.0%
GTGTCTTTGATGCACGGATG+TGG - chr6_3:40914976-40914995 Msa0951200:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr6_3:40915407-40915426 None:intergenic 50.0%
TGGGCCCCACTAGAAAAGTA+GGG + chr6_3:40916311-40916330 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG + chr6_3:40916462-40916481 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr6_3:40916658-40916677 Msa0951200:CDS 50.0%
TTTATGTACTCCCTCCGTCC+CGG + chr6_3:40916675-40916694 None:intergenic 50.0%
ATGCAGGTAGGGAATGAGCT+TGG - chr6_3:40917031-40917050 Msa0951200:CDS 50.0%
CAAAGCAAAGCTAGCAGCCA+TGG - chr6_3:40917069-40917088 Msa0951200:intron 50.0%
ATCCTTAGATACGGATGGGC+CGG - chr6_3:40917145-40917164 Msa0951200:intron 50.0%
CTCGTCGTTTGTGAATAGCC+CGG + chr6_3:40917167-40917186 None:intergenic 50.0%
! GATGCAACCAAGGCTTTGAC+GGG + chr6_3:40917190-40917209 None:intergenic 50.0%
TGGCATGACTGATGCAACCA+AGG + chr6_3:40917200-40917219 None:intergenic 50.0%
GGCAGTTTCCAAGCTCACAT+AGG + chr6_3:40917231-40917250 None:intergenic 50.0%
GGAAACTGCCCACAAACAAC+CGG - chr6_3:40917241-40917260 Msa0951200:intron 50.0%
!! GGGTTTAGTGGGCTTTGGTT+TGG - chr6_3:40917379-40917398 Msa0951200:intron 50.0%
! TTGGGAAGCTGAGGCTTTGA+AGG - chr6_3:40917465-40917484 Msa0951200:intron 50.0%
GTCCTCTTCCTAGGTCGTCT+TGG - chr6_3:40911810-40911829 Msa0951200:intron 55.0%
GGTAGCTTAGAGCTAGCTGG+TGG - chr6_3:40911831-40911850 Msa0951200:intron 55.0%
! GCTACAAACCGGTTCCAGAC+CGG + chr6_3:40911916-40911935 None:intergenic 55.0%
!! ACATGGTCGTGTTGATGGCG+GGG - chr6_3:40912309-40912328 Msa0951200:intron 55.0%
!! GTGTTGATGGCGGGGTATGT+CGG - chr6_3:40912317-40912336 Msa0951200:intron 55.0%
!! TGTTGATGGCGGGGTATGTC+GGG - chr6_3:40912318-40912337 Msa0951200:intron 55.0%
! CGGGGTATGTCGGGTTGTTT+AGG - chr6_3:40912327-40912346 Msa0951200:intron 55.0%
GGTGGTGAGTGAAGGTTTGG+GGG - chr6_3:40912406-40912425 Msa0951200:intron 55.0%
ACTGTCCCTATGGCTCTTGC+TGG - chr6_3:40912581-40912600 Msa0951200:intron 55.0%
CACAGCCAGCAAGAGCCATA+GGG + chr6_3:40912589-40912608 None:intergenic 55.0%
ACACAGCCAGCAAGAGCCAT+AGG + chr6_3:40912590-40912609 None:intergenic 55.0%
! TTGCTGGCTGTGTCTCTGCT+AGG - chr6_3:40912597-40912616 Msa0951200:intron 55.0%
! TGCTGGCTGTGTCTCTGCTA+GGG - chr6_3:40912598-40912617 Msa0951200:intron 55.0%
!! TAGGTTGGTATTGGGTGGGG+TGG - chr6_3:40913308-40913327 Msa0951200:intron 55.0%
GGCCGGAAAAAACGGGAAGA+TGG + chr6_3:40913929-40913948 None:intergenic 55.0%
CGGCCAGCATGAGATGTGAT+TGG - chr6_3:40913944-40913963 Msa0951200:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr6_3:40915403-40915422 None:intergenic 55.0%
GTGGGCCCCACTAGAAAAGT+AGG + chr6_3:40916312-40916331 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG + chr6_3:40916463-40916482 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr6_3:40916662-40916681 Msa0951200:CDS 55.0%
GTAGGGAATGAGCTTGGAGC+TGG - chr6_3:40917037-40917056 Msa0951200:CDS 55.0%
TGCACATCCTAGGGCTACCA+TGG + chr6_3:40917089-40917108 None:intergenic 55.0%
TCCTTAGATACGGATGGGCC+GGG - chr6_3:40917146-40917165 Msa0951200:intron 55.0%
CTACTTTGTCGGTACTCCGG+TGG - chr6_3:40917327-40917346 Msa0951200:intron 55.0%
! GCTGGTGGTGCACTGTCCAT+AGG - chr6_3:40911846-40911865 Msa0951200:intron 60.0%
! ACAAACCGGTTCCAGACCGG+AGG + chr6_3:40911913-40911932 None:intergenic 60.0%
!! GCAATTTGGTGTACCGGGCG+TGG - chr6_3:40912259-40912278 Msa0951200:intron 60.0%
ATGTTAAGGTGGCCGGGCTG+TGG - chr6_3:40912362-40912381 Msa0951200:intron 60.0%
TGGCGGAGGAGGAATGATGG+TGG - chr6_3:40912388-40912407 Msa0951200:intron 60.0%
! TGGTATTGGGTGGGGTGGCA+TGG - chr6_3:40913313-40913332 Msa0951200:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr6_3:40915404-40915423 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr6_3:40916661-40916680 Msa0951200:CDS 60.0%
CTAGCAGCCATGGTAGCCCT+AGG - chr6_3:40917079-40917098 Msa0951200:intron 60.0%
TGCCCACAAACAACCGGCTG+CGG - chr6_3:40917247-40917266 Msa0951200:intron 60.0%
TGCCGCAGCCGGTTGTTTGT+GGG + chr6_3:40917252-40917271 None:intergenic 60.0%
ATGCCGCAGCCGGTTGTTTG+TGG + chr6_3:40917253-40917272 None:intergenic 60.0%
CTGCGGCATCCTTCGTGGAA+CGG - chr6_3:40917264-40917283 Msa0951200:intron 60.0%
CTTTGTCGGTACTCCGGTGG+CGG - chr6_3:40917330-40917349 Msa0951200:intron 60.0%
!! TGGCGGTGGGCTTGGCATTT+TGG - chr6_3:40917347-40917366 Msa0951200:intron 60.0%
TTAAGGTGGCCGGGCTGTGG+CGG - chr6_3:40912365-40912384 Msa0951200:intron 65.0%
!! CGGTGGCGGAGGAGGAATGA+TGG - chr6_3:40912385-40912404 Msa0951200:intron 65.0%
GCCCGGCCCATCCGTATCTA+AGG + chr6_3:40917150-40917169 None:intergenic 65.0%
CGACGAGCCCGTCAAAGCCT+TGG - chr6_3:40917180-40917199 Msa0951200:intron 65.0%
TCCACGAAGGATGCCGCAGC+CGG + chr6_3:40917263-40917282 None:intergenic 65.0%
GCATCCTTCGTGGAACGGCC+CGG - chr6_3:40917269-40917288 Msa0951200:intron 65.0%
!! TGTTGGCCCCTATGACGGGC+CGG + chr6_3:40917291-40917310 None:intergenic 65.0%
AATGCCAAGCCCACCGCCAC+CGG + chr6_3:40917346-40917365 None:intergenic 65.0%
GTTCTCGTCGGCCTCGCCTC+CGG - chr6_3:40911894-40911913 Msa0951200:intron 70.0%
! CCTCGCCTCCGGTCTGGAAC+CGG - chr6_3:40911905-40911924 Msa0951200:intron 70.0%
TGGTGTACCGGGCGTGGCGA+TGG - chr6_3:40912265-40912284 Msa0951200:intron 70.0%
ACCGGCTGCGGCATCCTTCG+TGG - chr6_3:40917259-40917278 Msa0951200:intron 70.0%
GAACGGCCCGGCCCGTCATA+GGG - chr6_3:40917281-40917300 Msa0951200:intron 70.0%
AACGGCCCGGCCCGTCATAG+GGG - chr6_3:40917282-40917301 Msa0951200:intron 70.0%
!! GTTGGCCCCTATGACGGGCC+GGG + chr6_3:40917290-40917309 None:intergenic 70.0%
! TGTCGGTACTCCGGTGGCGG+TGG - chr6_3:40917333-40917352 Msa0951200:intron 70.0%
! GTCGGTACTCCGGTGGCGGT+GGG - chr6_3:40917334-40917353 Msa0951200:intron 70.0%
! TACTCCGGTGGCGGTGGGCT+TGG - chr6_3:40917339-40917358 Msa0951200:intron 70.0%
CCGGTTCCAGACCGGAGGCG+AGG + chr6_3:40911908-40911927 None:intergenic 75.0%
ACGGACGCCATCGCCACGCC+CGG + chr6_3:40912275-40912294 None:intergenic 75.0%
GGAACGGCCCGGCCCGTCAT+AGG - chr6_3:40917280-40917299 Msa0951200:intron 75.0%
! CGTCGGCCTCGCCTCCGGTC+TGG - chr6_3:40911899-40911918 Msa0951200:intron 80.0%
! AGGTGGCCGGGCTGTGGCGG+TGG - chr6_3:40912368-40912387 Msa0951200:intron 80.0%
! TGGCCGGGCTGTGGCGGTGG+CGG - chr6_3:40912371-40912390 Msa0951200:intron 80.0%
! CCTCCGCCACCGCCACAGCC+CGG + chr6_3:40912377-40912396 None:intergenic 80.0%
!!! GGCTGTGGCGGTGGCGGAGG+AGG - chr6_3:40912377-40912396 Msa0951200:intron 80.0%
! CGGGCCGGGCCGTTCCACGA+AGG + chr6_3:40917276-40917295 None:intergenic 80.0%
!! CCGGGCTGTGGCGGTGGCGG+AGG - chr6_3:40912374-40912393 Msa0951200:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 40911185 40917618 40911185 ID=Msa0951200;Name=Msa0951200
chr6_3 mRNA 40911185 40917618 40911185 ID=Msa0951200-mRNA-1;Parent=Msa0951200;Name=Msa0951200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.5|0.66|3|0|517
chr6_3 exon 40917508 40917618 40917508 ID=Msa0951200-mRNA-1:exon:9803;Parent=Msa0951200-mRNA-1
chr6_3 exon 40916220 40917080 40916220 ID=Msa0951200-mRNA-1:exon:9802;Parent=Msa0951200-mRNA-1
chr6_3 exon 40911185 40911766 40911185 ID=Msa0951200-mRNA-1:exon:9801;Parent=Msa0951200-mRNA-1
chr6_3 CDS 40917508 40917618 40917508 ID=Msa0951200-mRNA-1:cds;Parent=Msa0951200-mRNA-1
chr6_3 CDS 40916220 40917080 40916220 ID=Msa0951200-mRNA-1:cds;Parent=Msa0951200-mRNA-1
chr6_3 CDS 40911185 40911766 40911185 ID=Msa0951200-mRNA-1:cds;Parent=Msa0951200-mRNA-1
Gene Sequence

>Msa0951200

CTGTTTGATTCACTACTCTTTTGCAGCAAGAACGAATATTTATCAACAAAAATGGGAGATGATGATAAAGACCATGTTTTCTTTTCACACAAATTCCCAACAACCTCTCAGGTGGTGGAAGAGTTGAAGGAACTATGGAGCATGGCTTTACCAATAACAGCTATGAACATGTTGGTATTTGTTAGAGCTGTTGTGTCTGTCCTCTTCCTAGGTCGTCTTGGTAGCTTAGAGCTAGCTGGTGGTGCACTGTCCATAGGTTTCACAAACATAACAGGGTACTCTGTTCTCGTCGGCCTCGCCTCCGGTCTGGAACCGGTTTGTAGCCAAGCTTTTGGTAGCAAAAACTGGGAACTTCTTTCCCTTTCACTGCAACGTATGGTTCTCATACTTCTCATGGCAATTGTACCCATAAGTCTCCTTTGGCTTAACCTTGAAAAAATCATGCTTTTCATGGGACAAGATGGTAAAATCACTGAAATGGCAGCAATCTATTGTTTCTATTCACTACCTGATCTTTTGACAAATACTTTGTTACAACCTTTGAGAGTGTTTTTAAGGTCACAAAAAGTGACAAAACCTATGATGTATTGCTCTTTGATAGCAGTTGTTTTTCATGTGCCTTTGAATTATTTCTTGGTCATGGTGATGCAATTTGGTGTACCGGGCGTGGCGATGGCGTCCGTGTTAACGAATATGAACATGGTCGTGTTGATGGCGGGGTATGTCGGGTTGTTTAGGAAGAAGGAGATGATGTTAAGGTGGCCGGGCTGTGGCGGTGGCGGAGGAGGAATGATGGTGGTGAGTGAAGGTTTGGGGGAGTTGATGAAATTGGCTGTACCTAGTTGTCTTATGATATGTTTGGAATGGTGGTGGTATGAGATTGTTACTGTTTTGGCTGGTTATTTGGAGAATCCTACATTGGCTGTTGCTGCTACTGGGATTTTGATTCAGACAACTAGTATGATGTATACTGTAGGGAATGAGCTTGGAGCTGGTAAACCATACAAAGCAAAGCTAGCAGCCATGGTAGCCCTAGGATGTGCATTTGTGATGGGTTTTATCAATGTAACATGGACAGTGATCCTTAGATACGGATGGGCCGGGCTATTCACAAACGACGAGCCCGTCAAAGCCTTGGTTGCATCAGTCATGCCAATTATGGGCCTATGTGAGCTTGGAAACTGCCCACAAACAACCGGCTGCGGCATCCTTCGTGGAACGGCCCGGCCCGTCATAGGGGCCAACATAAACCTAGGCTCATTCTACTTTGTCGGTACTCCGGTGGCGGTGGGCTTGGCATTTTGGTTCAAGATTGGGTTTAGTGGGCTTTGGTTTGGGCTTTTATCTGCACAAGTGGCATGTGCTTTGTCAATTTTATATGTTGTGATTATAAAAACTGATTGGGAAGCTGAGGCTTTGAAGGCAGAGAAGCTAACAAAGGTAGAGATGGTGATTTGCAATGAAAGTAAGAAGAATAAAGACAAGAAGAAAAATGAAGAATGCAAGGGTTTATTATTAGAGAATGAAAATGGGAACAAAATTGACATGTGCTAA

Protein sequence

>Msa0951200

LFDSLLFCSKNEYLSTKMGDDDKDHVFFSHKFPTTSQVVEELKELWSMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAFGSKNWELLSLSLQRMVLILLMAIVPISLLWLNLEKIMLFMGQDGKITEMAAIYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLIAVVFHVPLNYFLVMVMQFGVPGVAMASVLTNMNMVVLMAGYVGLFRKKEMMLRWPGCGGGGGGMMVVSEGLGELMKLAVPSCLMICLEWWWYEIVTVLAGYLENPTLAVAATGILIQTTSMMYTVGNELGAGKPYKAKLAAMVALGCAFVMGFINVTWTVILRYGWAGLFTNDEPVKALVASVMPIMGLCELGNCPQTTGCGILRGTARPVIGANINLGSFYFVGTPVAVGLAFWFKIGFSGLWFGLLSAQVACALSILYVVIIKTDWEAEALKAEKLTKVEMVICNESKKNKDKKKNEECKGLLLENENGNKIDMC*