AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055490 MtrunA17_Chr1g0148771 96.936 359 11 0 1 359 1 359 0.0 730
Msa0055490 MtrunA17_Chr2g0332191 47.619 357 169 4 4 352 3 349 1.43e-114 337
Msa0055490 MtrunA17_Chr5g0421011 31.054 351 223 10 24 358 4 351 4.35e-48 166
Msa0055490 MtrunA17_Chr8g0375601 33.798 287 179 8 67 346 61 343 8.22e-47 163
Msa0055490 MtrunA17_Chr2g0314381 32.258 310 195 7 63 359 77 384 1.61e-46 162
Msa0055490 MtrunA17_Chr2g0296371 34.902 255 155 6 72 320 68 317 5.85e-46 160
Msa0055490 MtrunA17_Chr2g0314401 31.313 297 189 7 63 346 51 345 4.10e-44 155
Msa0055490 MtrunA17_Chr1g0162361 33.447 293 175 6 63 336 27 318 5.29e-44 155
Msa0055490 MtrunA17_Chr8g0375571 32.441 299 185 7 63 346 45 341 6.66e-44 155
Msa0055490 MtrunA17_Chr8g0375671 32.765 293 187 7 74 359 72 361 3.53e-43 153
Msa0055490 MtrunA17_Chr5g0424201 32.292 288 184 6 63 340 44 330 5.06e-42 149
Msa0055490 MtrunA17_Chr5g0423251 31.597 288 183 7 63 339 47 331 2.60e-41 148
Msa0055490 MtrunA17_Chr7g0242551 29.907 321 202 8 13 318 9 321 2.88e-41 148
Msa0055490 MtrunA17_Chr1g0162191 32.646 291 172 8 63 336 47 330 3.68e-41 147
Msa0055490 MtrunA17_Chr5g0423191 32.632 285 178 7 63 336 47 328 4.43e-41 147
Msa0055490 MtrunA17_Chr2g0319491 33.028 327 188 11 43 355 17 326 4.54e-41 147
Msa0055490 MtrunA17_Chr5g0420941 31.834 289 177 7 63 337 45 327 5.17e-41 147
Msa0055490 MtrunA17_Chr5g0421041 32.281 285 179 7 63 336 45 326 5.68e-41 147
Msa0055490 MtrunA17_Chr2g0314391 30.323 310 201 7 63 359 70 377 6.15e-41 147
Msa0055490 MtrunA17_Chr5g0421091 32.107 299 183 7 63 346 45 338 6.65e-41 147
Msa0055490 MtrunA17_Chr1g0204181 32.323 297 173 8 57 327 46 340 7.66e-41 147
Msa0055490 MtrunA17_Chr3g0130391 32.353 272 165 4 64 318 67 336 1.96e-40 146
Msa0055490 MtrunA17_Chr8g0365241 30.435 299 192 8 63 348 57 352 2.44e-40 145
Msa0055490 MtrunA17_Chr8g0336761 32.026 306 184 10 63 350 60 359 2.76e-40 145
Msa0055490 MtrunA17_Chr5g0423211 30.822 292 178 8 63 337 47 331 3.15e-40 145
Msa0055490 MtrunA17_Chr5g0423201 32.432 296 186 8 63 346 47 340 4.18e-40 145
Msa0055490 MtrunA17_Chr5g0423221 32.404 287 181 7 63 338 71 355 4.82e-40 145
Msa0055490 MtrunA17_Chr5g0412681 30.503 318 180 9 47 337 10 313 5.70e-40 144
Msa0055490 MtrunA17_Chr7g0265221 32.154 311 174 8 30 318 44 339 1.06e-39 144
Msa0055490 MtrunA17_Chr7g0239111 31.086 267 175 6 60 319 52 316 1.30e-39 144
Msa0055490 MtrunA17_Chr5g0420951 30.877 285 184 6 63 336 53 335 1.60e-39 143
Msa0055490 MtrunA17_Chr5g0421101 31.081 296 189 8 63 346 47 339 1.69e-39 143
Msa0055490 MtrunA17_Chr8g0336851 29.193 322 192 11 53 350 50 359 1.81e-39 143
Msa0055490 MtrunA17_Chr6g0474391 33.217 286 165 7 57 318 51 334 3.38e-39 143
Msa0055490 MtrunA17_Chr2g0313111 31.818 264 170 5 61 318 26 285 3.39e-39 142
Msa0055490 MtrunA17_Chr7g0239821 28.374 289 193 7 60 337 61 346 3.56e-39 142
Msa0055490 MtrunA17_Chr8g0336781 29.283 321 194 9 53 350 85 395 5.73e-39 143
Msa0055490 MtrunA17_Chr7g0239101 31.343 268 173 6 60 319 52 316 5.76e-39 142
Msa0055490 MtrunA17_Chr5g0420981 29.431 299 195 8 63 348 53 348 5.82e-39 142
Msa0055490 MtrunA17_Chr8g0375681 32.734 278 177 7 89 359 15 289 7.71e-39 140
Msa0055490 MtrunA17_Chr3g0109041 33.220 295 178 9 61 337 40 333 8.91e-39 141
Msa0055490 MtrunA17_Chr8g0351101 32.353 272 166 5 63 318 54 323 1.11e-38 141
Msa0055490 MtrunA17_Chr5g0412671 30.169 295 180 9 63 337 38 326 1.64e-38 140
Msa0055490 MtrunA17_Chr3g0125201 31.599 269 164 6 62 318 2 262 2.93e-38 139
Msa0055490 MtrunA17_Chr8g0336751 31.429 315 175 11 62 350 93 392 3.52e-38 140
Msa0055490 MtrunA17_Chr3g0114861 31.010 287 188 6 59 336 36 321 4.11e-38 139
Msa0055490 MtrunA17_Chr8g0348081 30.625 320 170 12 63 350 60 359 4.82e-38 139
Msa0055490 MtrunA17_Chr4g0006371 29.795 292 186 7 44 318 40 329 5.36e-38 139
Msa0055490 MtrunA17_Chr5g0420901 30.847 295 191 7 63 346 46 338 5.66e-38 139
Msa0055490 MtrunA17_Chr5g0424211 32.075 265 170 5 63 318 42 305 7.09e-38 138
Msa0055490 MtrunA17_Chr3g0125421 31.673 281 173 5 54 318 29 306 7.70e-38 139
Msa0055490 MtrunA17_Chr5g0412651 31.615 291 165 9 63 329 38 318 8.95e-38 138
Msa0055490 MtrunA17_Chr3g0128001 32.292 288 173 8 63 336 38 317 1.35e-37 137
Msa0055490 MtrunA17_Chr4g0045411 29.316 307 193 5 60 343 27 332 1.72e-37 137
Msa0055490 MtrunA17_Chr5g0398291 29.856 278 180 5 53 316 37 313 1.75e-37 138
Msa0055490 MtrunA17_Chr8g0345831 32.222 270 160 7 63 318 42 302 2.23e-37 137
Msa0055490 MtrunA17_Chr4g0064781 30.769 312 199 7 22 317 5 315 4.33e-37 137
Msa0055490 MtrunA17_Chr7g0239121 31.227 269 173 7 60 319 48 313 5.57e-37 136
Msa0055490 MtrunA17_Chr8g0336631 30.159 315 179 10 63 350 60 360 7.18e-37 136
Msa0055490 MtrunA17_Chr1g0191201 32.000 275 162 5 64 318 54 323 1.35e-36 136
Msa0055490 MtrunA17_Chr2g0285931 30.597 268 171 5 63 318 28 292 2.45e-36 134
Msa0055490 MtrunA17_Chr4g0066121 31.169 308 176 10 63 345 60 356 4.36e-36 134
Msa0055490 MtrunA17_Chr6g0455481 30.282 284 185 6 63 336 42 322 4.90e-36 134
Msa0055490 MtrunA17_Chr3g0102041 33.469 245 160 3 76 318 60 303 5.56e-36 134
Msa0055490 MtrunA17_Chr1g0179801 31.861 317 190 9 63 356 66 379 8.66e-36 134
Msa0055490 MtrunA17_Chr1g0184161 26.506 332 204 8 24 336 9 319 1.66e-35 132
Msa0055490 MtrunA17_Chr5g0426891 31.786 280 168 8 73 340 58 326 1.90e-35 132
Msa0055490 MtrunA17_Chr3g0087031 26.543 324 217 8 4 318 9 320 1.98e-35 132
Msa0055490 MtrunA17_Chr3g0126741 28.969 359 224 11 2 343 4 348 2.57e-35 132
Msa0055490 MtrunA17_Chr8g0336861 27.019 322 201 9 53 350 50 361 5.38e-35 131
Msa0055490 MtrunA17_Chr4g0045451 30.314 287 170 8 59 318 22 305 1.19e-34 130
Msa0055490 MtrunA17_Chr8g0375701 30.719 306 186 10 62 350 54 350 1.72e-34 130
Msa0055490 MtrunA17_Chr2g0311831 30.312 320 170 12 63 350 68 366 1.92e-34 130
Msa0055490 MtrunA17_Chr2g0311761 30.530 321 169 13 63 350 68 367 3.77e-34 129
Msa0055490 MtrunA17_Chr8g0371921 31.273 275 179 5 52 318 31 303 4.34e-34 129
Msa0055490 MtrunA17_Chr7g0250511 27.063 303 197 8 51 337 38 332 4.69e-34 128
Msa0055490 MtrunA17_Chr3g0113641 30.769 286 179 8 48 318 35 316 4.92e-34 129
Msa0055490 MtrunA17_Chr1g0184101 28.231 294 181 7 63 337 38 320 7.78e-34 127
Msa0055490 MtrunA17_Chr4g0045441 29.348 276 174 7 72 329 47 319 8.78e-34 128
Msa0055490 MtrunA17_Chr4g0045431 29.412 272 175 6 74 329 49 319 1.01e-33 127
Msa0055490 MtrunA17_Chr3g0093761 29.210 291 190 8 56 336 49 333 1.15e-33 127
Msa0055490 MtrunA17_Chr8g0371931 33.086 269 163 6 63 318 39 303 1.51e-33 127
Msa0055490 MtrunA17_Chr1g0184111 25.602 332 208 8 25 337 9 320 1.80e-33 127
Msa0055490 MtrunA17_Chr3g0093751 28.866 291 192 7 56 336 49 334 4.20e-33 126
Msa0055490 MtrunA17_Chr2g0311921 27.564 312 189 11 51 338 42 340 5.11e-33 126
Msa0055490 MtrunA17_Chr7g0247741 30.169 295 192 7 63 346 11 302 7.94e-33 124
Msa0055490 MtrunA17_Chr3g0145171 30.996 271 168 7 63 316 52 320 1.00e-32 125
Msa0055490 MtrunA17_Chr3g0121141 29.352 293 183 9 64 342 5 287 1.02e-32 124
Msa0055490 MtrunA17_Chr2g0311631 28.713 303 190 8 55 337 46 342 1.61e-32 124
Msa0055490 MtrunA17_Chr7g0239071 31.667 240 158 5 83 319 25 261 1.69e-32 123
Msa0055490 MtrunA17_Chr4g0045471 29.225 284 172 7 63 319 26 307 2.06e-32 124
Msa0055490 MtrunA17_Chr1g0184151 27.304 293 183 7 63 336 38 319 2.31e-32 124
Msa0055490 MtrunA17_Chr3g0093741 29.553 291 190 7 56 336 49 334 2.49e-32 124
Msa0055490 MtrunA17_Chr5g0405411 32.669 251 156 4 75 318 59 303 3.07e-32 124
Msa0055490 MtrunA17_Chr4g0055591 30.154 325 175 12 56 350 54 356 3.19e-32 124
Msa0055490 MtrunA17_Chr7g0220011 29.066 289 193 6 60 339 36 321 3.71e-32 123
Msa0055490 MtrunA17_Chr5g0437181 30.258 271 170 8 63 318 49 315 4.37e-32 123
Msa0055490 MtrunA17_Chr1g0184121 25.301 332 209 8 25 337 9 320 6.80e-32 122
Msa0055490 MtrunA17_Chr7g0220001 29.588 267 169 8 63 318 41 299 7.11e-32 122
Msa0055490 MtrunA17_Chr1g0162321 26.935 323 189 9 59 343 65 378 1.81e-31 122
Msa0055490 MtrunA17_Chr1g0162351 26.935 323 189 9 59 343 65 378 1.96e-31 122
Msa0055490 MtrunA17_Chr7g0232161 31.579 247 156 8 63 301 60 301 3.48e-31 120
Msa0055490 MtrunA17_Chr5g0439011 29.167 264 171 6 64 318 6 262 3.57e-31 120
Msa0055490 MtrunA17_Chr8g0370711 31.293 294 177 9 63 339 52 337 4.30e-31 120
Msa0055490 MtrunA17_Chr8g0348951 27.759 299 205 6 63 351 10 307 5.36e-31 119
Msa0055490 MtrunA17_Chr2g0289341 28.947 266 169 8 64 318 5 261 1.08e-30 119
Msa0055490 MtrunA17_Chr2g0314371 30.855 269 151 7 63 300 52 316 1.63e-30 119
Msa0055490 MtrunA17_Chr1g0187821 29.391 279 164 8 55 313 56 321 1.77e-30 119
Msa0055490 MtrunA17_Chr8g0358941 27.835 291 189 7 63 336 27 313 2.73e-30 118
Msa0055490 MtrunA17_Chr1g0187811 27.937 315 188 10 62 350 187 488 2.86e-30 120
Msa0055490 MtrunA17_Chr8g0384461 31.727 249 150 6 80 316 73 313 4.38e-30 118
Msa0055490 MtrunA17_Chr1g0194321 31.786 280 160 8 63 318 20 292 4.68e-30 117
Msa0055490 MtrunA17_Chr8g0370721 29.268 287 186 8 63 336 52 334 4.88e-30 117
Msa0055490 MtrunA17_Chr8g0384481 30.078 256 165 6 72 318 76 326 5.11e-30 118
Msa0055490 MtrunA17_Chr6g0488511 29.818 275 161 10 62 318 2 262 1.69e-29 115
Msa0055490 MtrunA17_Chr7g0239091 28.462 260 169 6 60 313 157 405 2.06e-29 117
Msa0055490 MtrunA17_Chr8g0354261 29.457 258 164 6 63 308 68 319 3.01e-29 116
Msa0055490 MtrunA17_Chr1g0187831 28.395 324 189 11 56 350 60 369 3.57e-29 116
Msa0055490 MtrunA17_Chr2g0311701 27.914 326 191 11 63 359 69 379 1.36e-28 114
Msa0055490 MtrunA17_Chr2g0311861 30.492 305 169 15 63 350 64 342 1.86e-28 113
Msa0055490 MtrunA17_Chr7g0225881 30.000 300 172 13 63 338 67 352 2.56e-28 113
Msa0055490 MtrunA17_Chr7g0265351 27.305 282 194 5 63 336 39 317 3.46e-28 112
Msa0055490 MtrunA17_Chr3g0145181 27.891 294 185 10 61 336 50 334 3.53e-28 112
Msa0055490 MtrunA17_Chr2g0311711 28.391 317 185 11 63 353 67 367 6.06e-28 112
Msa0055490 MtrunA17_Chr1g0167911 30.116 259 164 8 61 309 52 303 7.95e-28 112
Msa0055490 MtrunA17_Chr8g0354241 29.070 258 165 6 63 308 68 319 9.49e-28 112
Msa0055490 MtrunA17_Chr8g0364471 28.996 269 172 8 53 309 56 317 1.71e-27 111
Msa0055490 MtrunA17_Chr4g0053251 31.379 290 165 9 59 318 4 289 2.10e-27 110
Msa0055490 MtrunA17_Chr3g0145201 27.682 289 192 9 61 336 685 969 3.75e-27 113
Msa0055490 MtrunA17_Chr4g0068891 29.066 289 183 9 63 336 20 301 1.31e-26 107
Msa0055490 MtrunA17_Chr3g0092531 26.715 277 189 5 73 343 26 294 2.11e-26 107
Msa0055490 MtrunA17_Chr5g0394071 32.787 183 117 3 170 350 2 180 2.44e-26 103
Msa0055490 MtrunA17_Chr7g0235951 26.875 320 184 12 63 350 67 368 3.40e-26 107
Msa0055490 MtrunA17_Chr4g0050031 26.129 310 209 6 24 318 20 324 4.17e-26 107
Msa0055490 MtrunA17_Chr5g0420721 30.172 232 155 5 110 336 1 230 4.21e-26 105
Msa0055490 MtrunA17_Chr4g0045461 27.000 300 162 8 59 318 22 304 4.55e-26 107
Msa0055490 MtrunA17_Chr2g0311681 26.480 321 184 10 63 350 63 364 5.68e-26 107
Msa0055490 MtrunA17_Chr7g0247991 29.355 310 164 10 63 338 67 355 6.82e-26 107
Msa0055490 MtrunA17_Chr6g0472861 30.502 259 160 10 63 309 70 320 1.22e-25 106
Msa0055490 MtrunA17_Chr1g0167961 29.889 271 154 10 59 309 65 319 1.42e-25 105
Msa0055490 MtrunA17_Chr2g0311741 27.829 327 197 11 45 349 14 323 1.74e-25 104
Msa0055490 MtrunA17_Chr2g0311691 26.791 321 183 9 63 350 63 364 2.53e-25 105
Msa0055490 MtrunA17_Chr3g0114871 28.755 233 158 5 63 288 42 273 2.66e-25 103
Msa0055490 MtrunA17_Chr4g0055871 27.097 310 188 11 63 347 9 305 3.06e-25 103
Msa0055490 MtrunA17_Chr3g0105281 29.368 269 171 8 58 316 29 288 4.39e-25 103
Msa0055490 MtrunA17_Chr8g0335411 28.261 322 195 9 54 350 58 368 6.40e-25 103
Msa0055490 MtrunA17_Chr6g0486831 29.642 307 182 12 61 337 19 321 1.08e-24 102
Msa0055490 MtrunA17_Chr8g0389941 30.255 314 189 12 66 352 37 347 2.18e-24 102
Msa0055490 MtrunA17_Chr7g0236011 29.412 323 172 12 63 350 67 368 3.13e-24 102
Msa0055490 MtrunA17_Chr4g0037611 36.957 138 85 2 214 350 34 170 4.13e-24 97.8
Msa0055490 MtrunA17_Chr4g0004071 25.926 270 185 5 58 316 4 269 4.83e-24 100
Msa0055490 MtrunA17_Chr1g0184241 25.078 319 202 9 55 350 58 362 7.87e-24 100
Msa0055490 MtrunA17_Chr7g0266651 27.508 309 190 9 61 344 57 356 1.10e-23 100
Msa0055490 MtrunA17_Chr4g0011311 30.290 241 145 9 63 291 67 296 1.26e-23 99.4
Msa0055490 MtrunA17_Chr1g0167951 25.857 321 186 11 57 346 47 346 2.88e-23 99.4
Msa0055490 MtrunA17_Chr4g0055911 27.508 309 183 12 63 342 9 305 7.11e-23 97.4
Msa0055490 MtrunA17_Chr5g0407731 29.553 291 180 12 63 341 33 310 7.88e-23 97.8
Msa0055490 MtrunA17_Chr3g0126761 32.955 176 114 3 171 343 45 219 3.02e-22 94.0
Msa0055490 MtrunA17_Chr4g0052251 25.940 266 184 5 63 318 29 291 3.20e-22 95.9
Msa0055490 MtrunA17_Chr5g0420881 36.765 136 80 4 216 346 1 135 6.81e-22 90.9
Msa0055490 MtrunA17_Chr5g0407781 27.961 304 191 13 63 351 5 295 1.04e-21 94.0
Msa0055490 MtrunA17_Chr4g0066991 26.708 322 177 11 58 350 57 348 4.26e-21 93.2
Msa0055490 MtrunA17_Chr7g0233661 33.099 142 94 1 214 355 19 159 5.95e-21 88.6
Msa0055490 MtrunA17_Chr1g0167931 27.799 259 134 8 59 308 50 264 6.71e-21 92.0
Msa0055490 MtrunA17_Chr4g0004061 24.151 265 187 4 63 316 9 270 8.15e-21 91.7
Msa0055490 MtrunA17_Chr7g0256741 26.070 257 175 5 63 307 10 263 1.23e-20 91.3
Msa0055490 MtrunA17_Chr8g0336801 34.932 146 77 4 217 350 12 151 1.29e-20 87.4
Msa0055490 MtrunA17_Chr1g0161041 30.597 268 148 11 63 310 96 345 2.13e-20 91.7
Msa0055490 MtrunA17_Chr7g0235981 26.515 264 168 7 89 337 56 308 2.20e-20 90.5
Msa0055490 MtrunA17_Chr1g0161111 28.947 266 155 10 63 310 132 381 3.18e-20 91.3
Msa0055490 MtrunA17_Chr1g0161081 29.851 268 150 11 63 310 73 322 4.78e-20 90.1
Msa0055490 MtrunA17_Chr8g0362741 29.148 223 139 8 62 280 66 273 1.22e-19 87.8
Msa0055490 MtrunA17_Chr2g0293931 31.818 154 96 4 176 320 13 166 3.55e-17 79.3
Msa0055490 MtrunA17_Chr4g0075471 33.333 123 73 3 197 318 17 131 2.22e-16 75.9
Msa0055490 MtrunA17_Chr2g0319521 36.937 111 62 4 173 280 19 124 5.53e-16 73.9
Msa0055490 MtrunA17_Chr8g0336871 27.778 180 105 6 183 350 3 169 9.78e-16 74.3
Msa0055490 MtrunA17_Chr1g0170631 31.250 176 113 5 173 343 6 178 2.09e-15 73.9
Msa0055490 MtrunA17_Chr3g0138351 23.469 294 204 7 63 337 7 298 2.16e-15 76.3
Msa0055490 MtrunA17_Chr4g0064771 29.143 175 119 4 171 342 27 199 1.20e-14 72.0
Msa0055490 MtrunA17_Chr1g0158011 24.766 214 152 4 146 354 50 259 1.64e-14 72.8
Msa0055490 MtrunA17_Chr4g0009561 24.333 300 205 7 58 337 2 299 3.53e-14 72.4
Msa0055490 MtrunA17_Chr3g0092581 30.579 121 75 3 229 343 49 166 3.62e-14 70.5
Msa0055490 MtrunA17_Chr8g0364171 32.800 125 69 4 165 280 8 126 1.10e-13 67.8
Msa0055490 MtrunA17_Chr4g0009541 23.448 290 207 4 63 337 7 296 1.31e-13 70.9
Msa0055490 MtrunA17_Chr8g0375581 42.254 71 39 2 208 277 17 86 5.83e-13 63.9
Msa0055490 MtrunA17_Chr1g0148781 24.468 282 181 8 75 337 34 302 5.85e-13 68.9
Msa0055490 MtrunA17_Chr8g0336831 26.904 197 129 6 53 238 50 242 1.21e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055490 AT1G15550.1 45.531 358 182 4 1 351 1 352 3.93e-109 323
Msa0055490 AT1G80340.1 43.017 358 184 6 1 351 1 345 2.83e-95 288
Msa0055490 AT4G21690.1 40.833 360 186 6 3 350 2 346 9.27e-93 281
Msa0055490 AT1G80330.1 41.691 343 186 5 23 354 12 351 1.04e-89 274
Msa0055490 AT1G78550.1 33.218 289 179 6 60 336 50 336 3.52e-47 164
Msa0055490 AT1G17020.1 34.106 302 184 7 63 350 53 353 6.32e-47 163
Msa0055490 AT1G17010.1 32.343 303 191 6 61 350 52 353 1.43e-46 162
Msa0055490 AT3G21420.1 35.862 290 168 8 63 336 55 342 1.71e-45 159
Msa0055490 AT2G38240.1 34.672 274 166 7 55 318 40 310 6.09e-44 155
Msa0055490 AT4G10500.1 31.599 269 175 5 57 318 38 304 2.15e-43 154
Msa0055490 AT4G25300.1 32.558 301 189 6 63 350 52 351 4.39e-43 153
Msa0055490 AT4G25310.1 33.569 283 178 6 74 350 70 348 3.91e-42 150
Msa0055490 AT3G19010.1 33.333 285 158 8 63 318 28 309 7.92e-42 149
Msa0055490 AT3G19010.4 33.333 285 158 8 63 318 28 309 7.92e-42 149
Msa0055490 AT4G10490.1 32.841 271 163 7 60 318 39 302 1.03e-41 149
Msa0055490 AT4G25420.1 33.818 275 158 7 63 318 61 330 1.57e-41 149
Msa0055490 AT5G08640.2 31.930 285 183 6 62 336 42 325 1.58e-41 148
Msa0055490 AT5G08640.1 31.930 285 183 6 62 336 42 325 1.58e-41 148
Msa0055490 AT1G78550.2 33.840 263 163 7 79 336 2 258 1.01e-40 145
Msa0055490 AT1G60980.1 31.834 289 172 6 63 328 57 343 1.45e-39 144
Msa0055490 AT4G22880.1 32.130 277 173 6 54 316 38 313 3.10e-38 140
Msa0055490 AT4G22880.2 32.130 277 173 6 54 316 38 313 3.10e-38 140
Msa0055490 AT4G22880.3 32.130 277 173 6 54 316 38 313 3.10e-38 140
Msa0055490 AT5G05600.1 30.034 293 187 7 60 336 59 349 1.00e-37 139
Msa0055490 AT4G21200.1 28.671 286 178 7 63 336 42 313 1.56e-37 138
Msa0055490 AT5G51810.1 31.343 268 170 4 63 318 63 328 1.98e-37 139
Msa0055490 AT3G55970.1 30.357 280 180 5 53 318 42 320 2.56e-37 138
Msa0055490 AT5G07200.1 30.292 274 171 4 63 318 58 329 3.41e-37 138
Msa0055490 AT2G36690.2 31.970 269 163 6 63 318 61 322 1.00e-36 136
Msa0055490 AT2G36690.1 31.970 269 163 6 63 318 61 322 1.00e-36 136
Msa0055490 AT3G11180.2 32.830 265 167 6 63 318 95 357 1.99e-36 136
Msa0055490 AT3G11180.1 32.830 265 167 6 63 318 95 357 2.35e-36 136
Msa0055490 AT3G19010.3 31.228 285 134 8 63 318 28 279 3.32e-36 134
Msa0055490 AT3G51240.1 33.198 247 158 4 76 318 59 302 8.83e-36 134
Msa0055490 AT3G13610.1 28.475 295 189 9 57 337 56 342 1.50e-35 133
Msa0055490 AT1G77330.1 28.283 297 188 7 62 341 2 290 1.51e-35 132
Msa0055490 AT1G49390.1 30.479 292 189 6 63 342 45 334 1.88e-35 132
Msa0055490 AT1G30040.1 30.682 264 172 5 63 318 31 291 2.36e-35 132
Msa0055490 AT1G55290.1 28.475 295 192 9 54 337 56 342 3.36e-35 132
Msa0055490 AT2G34555.1 32.319 263 168 5 63 318 27 286 1.62e-34 130
Msa0055490 AT5G54000.2 29.260 311 201 7 30 329 19 321 3.88e-34 129
Msa0055490 AT5G24530.1 31.034 290 177 9 63 336 38 320 5.39e-34 128
Msa0055490 AT1G78440.1 29.630 270 174 5 61 318 16 281 5.44e-34 128
Msa0055490 AT1G12010.1 30.034 293 180 9 63 341 7 288 1.22e-33 127
Msa0055490 AT2G19590.1 33.212 274 148 10 63 318 11 267 2.43e-33 126
Msa0055490 AT5G59530.1 30.000 310 181 9 63 347 58 356 3.94e-32 124
Msa0055490 AT5G63590.1 28.421 285 192 6 63 336 14 297 6.81e-32 122
Msa0055490 AT1G06650.2 30.650 323 169 13 63 351 64 365 6.87e-32 123
Msa0055490 AT5G20550.1 31.081 296 183 8 63 342 45 335 7.12e-32 123
Msa0055490 AT5G63600.1 28.472 288 193 7 63 342 33 315 9.58e-32 122
Msa0055490 AT1G49390.2 30.859 256 171 5 91 342 2 255 1.53e-31 120
Msa0055490 AT4G16330.2 28.571 287 193 9 59 337 63 345 1.71e-31 122
Msa0055490 AT1G62380.1 27.740 292 188 8 63 341 7 288 2.58e-31 120
Msa0055490 AT3G19000.1 28.736 261 162 7 63 301 32 290 2.67e-31 121
Msa0055490 AT5G20400.1 29.492 295 188 9 63 342 45 334 4.09e-31 121
Msa0055490 AT5G59540.1 29.831 295 183 9 63 339 61 349 6.31e-31 120
Msa0055490 AT5G63600.2 28.374 289 193 8 63 342 33 316 8.15e-31 119
Msa0055490 AT1G06645.1 30.132 302 178 11 67 351 90 375 1.23e-30 120
Msa0055490 AT5G12270.1 28.916 332 204 12 22 337 25 340 1.29e-30 120
Msa0055490 AT1G04380.1 28.165 316 179 10 63 350 45 340 1.33e-30 119
Msa0055490 AT2G44800.1 27.946 297 195 6 61 343 50 341 1.44e-30 119
Msa0055490 AT3G19010.2 31.535 241 140 7 63 281 28 265 1.52e-30 118
Msa0055490 AT1G06640.1 28.302 318 183 11 63 351 64 365 2.77e-30 119
Msa0055490 AT1G44090.1 29.889 271 174 5 63 318 63 332 4.27e-30 119
Msa0055490 AT1G06620.1 29.206 315 182 10 63 351 62 361 4.53e-30 118
Msa0055490 AT5G54000.1 30.579 242 163 4 91 329 2 241 5.30e-30 116
Msa0055490 AT5G43440.1 28.912 294 179 8 63 336 62 345 6.59e-30 118
Msa0055490 AT5G43450.1 30.233 301 168 10 63 338 61 344 6.60e-30 118
Msa0055490 AT4G25420.2 31.646 237 138 7 63 280 61 292 3.31e-29 114
Msa0055490 AT3G61400.1 27.707 314 175 9 63 341 60 356 6.45e-29 115
Msa0055490 AT5G07480.1 27.273 308 198 7 57 343 38 340 1.49e-28 114
Msa0055490 AT3G60290.1 27.244 312 196 8 63 354 52 352 2.07e-28 114
Msa0055490 AT1G05010.1 29.963 267 166 9 64 318 5 262 2.21e-28 113
Msa0055490 AT1G03400.1 31.418 261 146 9 63 308 56 298 2.74e-28 113
Msa0055490 AT1G03410.2 28.859 298 176 11 63 336 57 342 3.30e-28 113
Msa0055490 AT1G03410.1 28.859 298 176 11 63 336 94 379 6.64e-28 113
Msa0055490 AT2G19590.2 33.607 244 133 9 87 318 26 252 7.03e-28 111
Msa0055490 AT5G51810.2 28.755 233 152 4 63 283 63 293 7.68e-28 111
Msa0055490 AT5G51310.1 26.730 318 203 10 63 356 5 316 8.56e-28 111
Msa0055490 AT5G43935.1 28.671 286 172 7 63 337 19 283 1.14e-27 110
Msa0055490 AT4G25300.2 36.066 183 111 4 169 346 72 253 1.17e-27 109
Msa0055490 AT3G12900.1 26.148 283 197 5 63 337 59 337 1.70e-27 111
Msa0055490 AT1G04350.1 28.165 316 175 12 63 347 58 352 1.07e-26 109
Msa0055490 AT3G55970.2 28.512 242 158 5 53 280 42 282 1.37e-26 107
Msa0055490 AT3G19000.2 27.170 265 165 8 47 289 20 278 1.74e-26 107
Msa0055490 AT5G63595.1 28.731 268 147 10 64 317 26 263 2.78e-26 106
Msa0055490 AT3G50210.4 29.592 294 171 9 59 318 4 295 3.01e-26 107
Msa0055490 AT3G50210.1 29.592 294 171 9 59 318 4 295 3.01e-26 107
Msa0055490 AT3G50210.3 29.592 294 171 9 59 318 4 295 3.01e-26 107
Msa0055490 AT3G51240.2 32.258 217 140 4 106 318 5 218 3.31e-26 106
Msa0055490 AT2G30840.1 27.986 293 187 8 62 336 56 342 7.71e-26 107
Msa0055490 AT2G30830.1 29.317 249 149 9 72 308 72 305 1.26e-25 106
Msa0055490 AT4G25310.2 28.369 282 166 6 74 350 70 320 2.54e-25 104
Msa0055490 AT2G25450.1 29.323 266 153 10 63 308 55 305 6.40e-25 104
Msa0055490 AT5G05600.2 28.571 231 150 6 63 280 62 290 8.12e-25 102
Msa0055490 AT1G02400.1 29.167 288 186 10 64 336 25 309 1.26e-24 102
Msa0055490 AT5G58660.1 28.421 285 166 9 63 316 34 311 1.89e-24 102
Msa0055490 AT3G47190.1 26.441 295 177 10 44 315 16 293 1.92e-24 102
Msa0055490 AT3G49630.1 29.021 286 174 7 61 318 7 291 2.53e-24 102
Msa0055490 AT1G50960.1 29.323 266 168 7 60 313 37 294 3.66e-24 101
Msa0055490 AT3G49630.3 28.727 275 174 6 65 318 14 287 8.61e-24 100
Msa0055490 AT1G14130.1 28.159 277 163 8 59 318 5 262 1.43e-23 99.8
Msa0055490 AT4G23340.1 26.452 310 194 11 63 351 10 306 1.52e-23 99.8
Msa0055490 AT1G30040.2 29.204 226 149 5 63 280 31 253 2.28e-23 98.2
Msa0055490 AT3G46500.5 28.435 313 193 11 61 350 18 322 3.77e-23 99.0
Msa0055490 AT1G03400.2 28.374 289 146 10 63 308 56 326 1.06e-22 98.2
Msa0055490 AT5G43440.2 29.646 226 145 6 63 279 62 282 1.24e-22 96.7
Msa0055490 AT3G49620.1 27.622 286 178 7 61 318 32 316 1.87e-22 97.4
Msa0055490 AT3G61400.2 28.631 241 137 6 63 280 60 288 2.12e-22 96.3
Msa0055490 AT1G04380.2 28.814 236 137 7 63 282 45 265 3.02e-22 95.1
Msa0055490 AT2G30840.3 27.645 293 182 9 62 336 56 336 3.70e-22 96.7
Msa0055490 AT1G06620.2 30.508 236 130 8 63 279 62 282 6.29e-22 94.7
Msa0055490 AT5G43450.2 30.736 231 134 8 63 279 61 279 6.29e-22 94.7
Msa0055490 AT5G59540.2 29.565 230 144 7 63 280 61 284 7.06e-22 94.4
Msa0055490 AT1G14120.2 30.627 271 156 9 58 313 3 256 1.19e-21 94.4
Msa0055490 AT1G14120.1 30.627 271 156 9 58 313 3 256 1.19e-21 94.4
Msa0055490 AT1G14120.3 30.627 271 156 9 58 313 3 256 1.19e-21 94.4
Msa0055490 AT1G47990.1 26.449 276 170 7 63 318 15 277 2.00e-21 94.0
Msa0055490 AT1G06650.1 30.041 243 133 9 63 284 64 290 3.41e-21 93.2
Msa0055490 AT3G46490.1 28.571 315 196 11 61 348 15 327 4.36e-21 93.2
Msa0055490 AT5G63580.2 27.876 226 157 4 60 280 16 240 9.26e-21 90.5
Msa0055490 AT5G63580.1 28.378 222 153 4 60 276 16 236 1.72e-20 89.7
Msa0055490 AT3G46500.7 29.818 275 165 10 61 315 18 284 2.58e-20 90.5
Msa0055490 AT1G35190.2 27.389 314 179 12 61 350 13 301 4.20e-20 89.7
Msa0055490 AT1G52820.1 23.396 265 190 3 63 317 12 273 7.94e-20 89.4
Msa0055490 AT1G52800.1 23.755 261 175 4 63 307 10 262 1.33e-19 88.6
Msa0055490 AT4G16330.1 29.775 178 117 5 161 337 69 239 2.32e-19 87.0
Msa0055490 AT1G15540.1 27.715 267 161 9 63 307 9 265 3.55e-19 87.4
Msa0055490 AT1G15540.4 27.715 267 161 9 63 307 9 265 3.55e-19 87.4
Msa0055490 AT1G15540.3 27.715 267 161 9 63 307 16 272 3.93e-19 87.4
Msa0055490 AT1G15540.2 27.715 267 161 9 63 307 12 268 4.09e-19 87.4
Msa0055490 AT1G06640.2 27.731 238 135 8 63 279 64 285 5.15e-19 87.0
Msa0055490 AT5G58660.2 27.823 248 142 8 63 280 34 274 9.87e-19 85.5
Msa0055490 AT1G35190.1 25.697 323 196 12 61 350 13 324 1.19e-18 86.3
Msa0055490 AT1G06640.3 27.119 236 135 8 63 277 64 283 1.62e-18 85.1
Msa0055490 AT5G07480.2 29.319 191 126 4 161 343 42 231 1.77e-18 84.3
Msa0055490 AT1G52790.1 28.216 241 156 6 75 307 27 258 3.83e-18 84.3
Msa0055490 AT1G80320.1 23.792 269 183 5 54 307 2 263 1.31e-17 83.2
Msa0055490 AT3G46490.2 29.520 271 165 10 61 307 15 283 4.10e-17 81.3
Msa0055490 AT3G50210.2 31.481 162 106 2 162 318 52 213 1.24e-16 79.0
Msa0055490 AT2G30840.2 27.511 229 148 6 63 279 57 279 2.16e-16 79.3
Msa0055490 AT1G02400.2 27.459 244 163 8 64 296 25 265 2.57e-16 78.6
Msa0055490 AT4G03070.1 24.262 305 184 10 63 337 14 301 2.20e-15 76.6
Msa0055490 AT4G23340.2 27.895 190 124 5 173 351 1 188 2.50e-15 74.3
Msa0055490 AT3G49630.2 30.380 158 108 2 162 318 62 218 6.70e-15 74.3
Msa0055490 AT3G46500.10 28.070 228 136 9 144 350 28 248 4.17e-13 68.9
Msa0055490 AT3G46500.1 28.070 228 136 9 144 350 28 248 4.17e-13 68.9
Msa0055490 AT1G52820.2 21.491 228 166 3 63 280 12 236 2.48e-12 66.6
Msa0055490 AT4G03050.2 35.398 113 65 2 205 316 257 362 2.52e-12 68.2
Msa0055490 AT4G03050.1 35.398 113 65 2 205 316 257 362 2.52e-12 68.2
Msa0055490 AT3G46500.4 28.889 180 106 7 173 337 1 173 4.16e-12 64.7
Msa0055490 AT3G46480.1 26.459 257 144 9 104 337 35 269 4.27e-12 66.6
Msa0055490 AT4G16770.1 26.636 214 130 7 63 256 22 228 6.85e-11 62.4

Find 94 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTCTTCAATAAAATTTA+AGG 0.053722 1_2:+10521875 None:intergenic
TCCTTCATGCCACATGAATT+TGG 0.134894 1_2:+10521740 None:intergenic
GGGATTAAAGCCAAGAATTT+AGG 0.142346 1_2:-10520078 Msa0055490:CDS
TGCCGCCGCCGGCCGATCTA+AGG 0.187616 1_2:+10521799 None:intergenic
GCATGAAGGATTCACAATTA+TGG 0.242045 1_2:-10521727 Msa0055490:CDS
GTGTTGTTGTGAATGATATT+AGG 0.257884 1_2:-10520215 Msa0055490:CDS
CCTTCATGCCACATGAATTT+GGG 0.265626 1_2:+10521741 None:intergenic
TTGACCGTCAAGGATTATAT+TGG 0.267073 1_2:-10520099 Msa0055490:CDS
GTGTTAACAACAAGTGTATT+TGG 0.278829 1_2:+10520291 None:intergenic
CCTATTTGTTCCATAGCATT+AGG 0.291601 1_2:+10521948 None:intergenic
TCTAAATGAAGAAAAGTCTA+AGG 0.297886 1_2:+10522097 None:intergenic
CATGAAGGATTCACAATTAT+GGG 0.326541 1_2:-10521726 Msa0055490:CDS
ACCTCTTCAATAAAATTTAA+GGG 0.330927 1_2:+10521876 None:intergenic
CTAGTGTCTTCATTTGCTTT+TGG 0.331692 1_2:+10520562 None:intergenic
TGATTATTTGGTTTCTCCTT+GGG 0.333536 1_2:-10520154 Msa0055490:CDS
GGATTAAAGCCAAGAATTTA+GGG 0.333538 1_2:-10520077 Msa0055490:CDS
TTGATTATTTGGTTTCTCCT+TGG 0.335325 1_2:-10520155 Msa0055490:CDS
CTAATGACTACAAACGGTTT+TGG 0.342387 1_2:-10521671 Msa0055490:intron
GTCCATTTGTTTGACTTTGA+TGG 0.349561 1_2:+10520361 None:intergenic
CCTAATGCTATGGAACAAAT+AGG 0.352189 1_2:-10521948 Msa0055490:CDS
GGATCATTGAGATCAATAAT+TGG 0.362754 1_2:+10521969 None:intergenic
TGAGACCATGCATGTGAATC+AGG 0.372304 1_2:+10522068 None:intergenic
TGACCGTCAAGGATTATATT+GGG 0.373275 1_2:-10520098 Msa0055490:CDS
CAAAACCGTTTGTAGTCATT+AGG 0.376460 1_2:+10521672 None:intergenic
TGTTGTTGTGAATGATATTA+GGG 0.377032 1_2:-10520214 Msa0055490:CDS
TTCATATATTGTCAAATTCA+AGG 0.379962 1_2:-10520257 Msa0055490:CDS
GTATGCCATGATTCTTCAAT+TGG 0.384058 1_2:+10521898 None:intergenic
GGAGAAACCAAATAATCAAC+TGG 0.391028 1_2:+10520159 None:intergenic
AACATGATATTCAACATATT+AGG 0.394181 1_2:-10520525 Msa0055490:CDS
TTTCACAAGAACAAAACAAA+TGG 0.399660 1_2:-10520500 Msa0055490:CDS
TCCTTCCAAGGAGAAACTTA+AGG 0.412885 1_2:-10521823 Msa0055490:CDS
GCCCTTAGATCGGCCGGCGG+CGG 0.426454 1_2:-10521801 Msa0055490:CDS
TTGATGGAGGATTGTGAAAA+GGG 0.432707 1_2:+10520377 None:intergenic
AGATCGGCCGGCGGCGGCAC+CGG 0.433339 1_2:-10521795 Msa0055490:CDS
CCCAAATTCATGTGGCATGA+AGG 0.434429 1_2:-10521741 Msa0055490:CDS
ACCGTATCCGGTGCCGCCGC+CGG 0.443067 1_2:+10521788 None:intergenic
GCCGGCGGCGGCACCGGATA+CGG 0.448321 1_2:-10521789 Msa0055490:CDS
TATTCGTGCTCTACCGTATC+CGG 0.453591 1_2:+10521776 None:intergenic
CAAATATTCAAAGAAGGTGT+AGG 0.458555 1_2:-10520336 Msa0055490:CDS
CTCCATCAAAGTCAAACAAA+TGG 0.468884 1_2:-10520363 Msa0055490:CDS
AATCCCAATATAATCCTTGA+CGG 0.475312 1_2:+10520095 None:intergenic
TTCACAAGAACAAAACAAAT+GGG 0.478547 1_2:-10520499 Msa0055490:CDS
TATTGAAGAGGTTGAAGAAG+AGG 0.485274 1_2:-10521865 Msa0055490:CDS
GCCGCCGCCGGCCGATCTAA+GGG 0.491190 1_2:+10521800 None:intergenic
TTTGATGGAGGATTGTGAAA+AGG 0.492761 1_2:+10520376 None:intergenic
TATTTGGTTTCTCCTTGGGT+TGG 0.506231 1_2:-10520150 Msa0055490:CDS
GCCTTCCAATTGAAGAATCA+TGG 0.506488 1_2:-10521903 Msa0055490:CDS
AAGGGCCTTAAGTTTCTCCT+TGG 0.507648 1_2:+10521818 None:intergenic
CACATGAATTTGGGGAAGAA+TGG 0.513540 1_2:+10521750 None:intergenic
ACAACAAGTGTATTTGGATG+AGG 0.513670 1_2:+10520297 None:intergenic
CAAGAACAAAACAAATGGGT+TGG 0.521644 1_2:-10520495 Msa0055490:CDS
CTAAATGAAGAAAAGTCTAA+GGG 0.525036 1_2:+10522098 None:intergenic
GTATTTGGATGAGGCTCCAC+AGG 0.527708 1_2:+10520306 None:intergenic
GCCTTAAGTTTCTCCTTGGA+AGG 0.527738 1_2:+10521822 None:intergenic
ATGATTGTCATAGCATCCAT+TGG 0.528319 1_2:+10522013 None:intergenic
TCTGGCCTAATGACTACAAA+CGG 0.536633 1_2:-10521677 Msa0055490:CDS
CTTAAGGCCCTTAGATCGGC+CGG 0.536954 1_2:-10521807 Msa0055490:CDS
AAAAGGGATGTGTCTGTGTG+TGG 0.538837 1_2:+10520393 None:intergenic
GGACTTCAAATATTCAAAGA+AGG 0.539580 1_2:-10520342 Msa0055490:CDS
TCTCAATGATCCTAATGCTA+TGG 0.543103 1_2:-10521958 Msa0055490:CDS
GCCATGATTCTTCAATTGGA+AGG 0.544955 1_2:+10521902 None:intergenic
AATACACTTGTTGTTAACAC+TGG 0.546004 1_2:-10520288 Msa0055490:CDS
AAAGGGATGTGTCTGTGTGT+GGG 0.550575 1_2:+10520394 None:intergenic
AAATATTCAAAGAAGGTGTA+GGG 0.556132 1_2:-10520335 Msa0055490:CDS
CATTTGTTTGACTTTGATGG+AGG 0.558108 1_2:+10520364 None:intergenic
GAAACTTAAGGCCCTTAGAT+CGG 0.567123 1_2:-10521811 Msa0055490:CDS
CTGCAGAGGGTGATCACGAT+AGG 0.569972 1_2:+10522136 None:intergenic
TATGACAATCATGATGAAGA+TGG 0.571656 1_2:-10522002 Msa0055490:CDS
TAGGCCTTGCATGTGAGAAG+TGG 0.578181 1_2:-10521929 Msa0055490:CDS
AGTGATGATTTCACATCCAA+TGG 0.580688 1_2:-10522029 Msa0055490:CDS
CTTCATGCCACATGAATTTG+GGG 0.589473 1_2:+10521742 None:intergenic
CTTTGCCTGATTCACATGCA+TGG 0.593500 1_2:-10522073 Msa0055490:CDS
GTTGGTTCTAACAACCATGT+TGG 0.601162 1_2:-10520477 Msa0055490:CDS
AGGCCTTGCATGTGAGAAGT+GGG 0.602877 1_2:-10521928 Msa0055490:CDS
CACCCCACTTCTCACATGCA+AGG 0.608207 1_2:+10521925 None:intergenic
TGGTCTCAATCTAATGATGA+TGG 0.617219 1_2:-10522053 Msa0055490:CDS
TATTAGGGATAGATATTCTG+TGG 0.617579 1_2:-10520199 Msa0055490:CDS
AAGGGATGTGTCTGTGTGTG+GGG 0.619468 1_2:+10520395 None:intergenic
GAGAAACCAAATAATCAACT+GGG 0.623914 1_2:+10520160 None:intergenic
ATAATATGATGAAGCTGCAG+AGG 0.624503 1_2:+10522122 None:intergenic
AGGTGTAGGGTATGTTCCTG+TGG 0.626553 1_2:-10520322 Msa0055490:CDS
CATTCTTCCCCAAATTCATG+TGG 0.632760 1_2:-10521749 Msa0055490:CDS
ACGGTCAAAGCACGAAAACG+TGG 0.634804 1_2:+10520114 None:intergenic
TTAGTTGCATTGCTCCAACA+TGG 0.643659 1_2:+10520463 None:intergenic
GATTAAAGCCAAGAATTTAG+GGG 0.646465 1_2:-10520076 Msa0055490:CDS
TAATATGATGAAGCTGCAGA+GGG 0.649379 1_2:+10522123 None:intergenic
ATTAAAGCCAAGAATTTAGG+GGG 0.652080 1_2:-10520075 Msa0055490:CDS
ATGAAGGATTCACAATTATG+GGG 0.667453 1_2:-10521725 Msa0055490:CDS
TAAATGAAGAAAAGTCTAAG+GGG 0.670540 1_2:+10522099 None:intergenic
AAGGCCCTTAGATCGGCCGG+CGG 0.682893 1_2:-10521804 Msa0055490:CDS
AAAGAATTATCACCAACCCA+AGG 0.683360 1_2:+10520138 None:intergenic
AGAAACCAAATAATCAACTG+GGG 0.694788 1_2:+10520161 None:intergenic
GAAACCAAATAATCAACTGG+GGG 0.700761 1_2:+10520162 None:intergenic
GGCCTTGCATGTGAGAAGTG+GGG 0.750401 1_2:-10521927 Msa0055490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTAAATTGAAGTTTTT+AGG - chr1_2:10521256-10521275 Msa0055490:intron 15.0%
!!! TTTTATTTTTGAAAAACGAA+GGG + chr1_2:10521481-10521500 None:intergenic 15.0%
!!! TTTTTATTTTTGAAAAACGA+AGG + chr1_2:10521482-10521501 None:intergenic 15.0%
!!! CTATTTAAATTGAAGTTTTT+AGG - chr1_2:10521256-10521275 Msa0055490:intron 15.0%
!!! TTTTATTTTTGAAAAACGAA+GGG + chr1_2:10521481-10521500 None:intergenic 15.0%
!!! TTTTTATTTTTGAAAAACGA+AGG + chr1_2:10521482-10521501 None:intergenic 15.0%
!! ACCTCTTCAATAAAATTTAA+GGG + chr1_2:10520317-10520336 None:intergenic 20.0%
!! AACCTCTTCAATAAAATTTA+AGG + chr1_2:10520318-10520337 None:intergenic 20.0%
!! TTACAATTTCTCGTAATTAA+TGG - chr1_2:10520639-10520658 Msa0055490:intron 20.0%
!! ACCATTACAAATTTATGATA+TGG - chr1_2:10520664-10520683 Msa0055490:intron 20.0%
!! CCATTACAAATTTATGATAT+GGG - chr1_2:10520665-10520684 Msa0055490:intron 20.0%
!! TATCAAAATCCTATGATATA+TGG - chr1_2:10520911-10520930 Msa0055490:intron 20.0%
!! ATATATAGAAAAATGCTTTG+TGG + chr1_2:10521044-10521063 None:intergenic 20.0%
!!! TTGAACGATTTTAAAATAGA+AGG + chr1_2:10521189-10521208 None:intergenic 20.0%
!! CAAGTTCAAAATTTGAAAAA+GGG + chr1_2:10521219-10521238 None:intergenic 20.0%
!! TCAAGTTCAAAATTTGAAAA+AGG + chr1_2:10521220-10521239 None:intergenic 20.0%
!!! CAAATTTTGAACTTGAAAAA+TGG - chr1_2:10521224-10521243 Msa0055490:intron 20.0%
!! AACATGATATTCAACATATT+AGG - chr1_2:10521665-10521684 Msa0055490:intron 20.0%
!! TTCATATATTGTCAAATTCA+AGG - chr1_2:10521933-10521952 Msa0055490:CDS 20.0%
!! ACCTCTTCAATAAAATTTAA+GGG + chr1_2:10520317-10520336 None:intergenic 20.0%
!! AACCTCTTCAATAAAATTTA+AGG + chr1_2:10520318-10520337 None:intergenic 20.0%
!! TTACAATTTCTCGTAATTAA+TGG - chr1_2:10520639-10520658 Msa0055490:intron 20.0%
!! ACCATTACAAATTTATGATA+TGG - chr1_2:10520664-10520683 Msa0055490:intron 20.0%
!! CCATTACAAATTTATGATAT+GGG - chr1_2:10520665-10520684 Msa0055490:intron 20.0%
!! TATCAAAATCCTATGATATA+TGG - chr1_2:10520911-10520930 Msa0055490:intron 20.0%
!! ATATATAGAAAAATGCTTTG+TGG + chr1_2:10521044-10521063 None:intergenic 20.0%
!!! TTGAACGATTTTAAAATAGA+AGG + chr1_2:10521189-10521208 None:intergenic 20.0%
!! CAAGTTCAAAATTTGAAAAA+GGG + chr1_2:10521219-10521238 None:intergenic 20.0%
!! TCAAGTTCAAAATTTGAAAA+AGG + chr1_2:10521220-10521239 None:intergenic 20.0%
!!! CAAATTTTGAACTTGAAAAA+TGG - chr1_2:10521224-10521243 Msa0055490:intron 20.0%
!! AACATGATATTCAACATATT+AGG - chr1_2:10521665-10521684 Msa0055490:intron 20.0%
!! TTCATATATTGTCAAATTCA+AGG - chr1_2:10521933-10521952 Msa0055490:CDS 20.0%
! TAAATGAAGAAAAGTCTAAG+GGG + chr1_2:10520094-10520113 None:intergenic 25.0%
! CTAAATGAAGAAAAGTCTAA+GGG + chr1_2:10520095-10520114 None:intergenic 25.0%
! TCTAAATGAAGAAAAGTCTA+AGG + chr1_2:10520096-10520115 None:intergenic 25.0%
!! ACCCTTAAATTTTATTGAAG+AGG - chr1_2:10520313-10520332 Msa0055490:CDS 25.0%
! CCCATATCATAAATTTGTAA+TGG + chr1_2:10520668-10520687 None:intergenic 25.0%
! AGTGTAAAATGAAAAGATCA+AGG + chr1_2:10520876-10520895 None:intergenic 25.0%
! AAAATCCTATGATATATGGT+TGG - chr1_2:10520915-10520934 Msa0055490:intron 25.0%
! TATAAATGCTCATCATATAG+AGG - chr1_2:10520969-10520988 Msa0055490:intron 25.0%
! TTTGTAAGTGAGTGAAAATA+GGG + chr1_2:10521159-10521178 None:intergenic 25.0%
!! TTTTGTAAGTGAGTGAAAAT+AGG + chr1_2:10521160-10521179 None:intergenic 25.0%
! TTTCACTCACTTACAAAAAT+TGG - chr1_2:10521162-10521181 Msa0055490:intron 25.0%
!!! GGTTTTGTTTTTGTATACAA+TGG - chr1_2:10521277-10521296 Msa0055490:intron 25.0%
!! GTTTTTGTATACAATGGAAT+AGG - chr1_2:10521283-10521302 Msa0055490:intron 25.0%
! TACAATATAGTTTGAATCTC+CGG + chr1_2:10521422-10521441 None:intergenic 25.0%
! TTTCACAAGAACAAAACAAA+TGG - chr1_2:10521690-10521709 Msa0055490:CDS 25.0%
! TTCACAAGAACAAAACAAAT+GGG - chr1_2:10521691-10521710 Msa0055490:CDS 25.0%
!! AAATATTCAAAGAAGGTGTA+GGG - chr1_2:10521855-10521874 Msa0055490:CDS 25.0%
! TGTTGTTGTGAATGATATTA+GGG - chr1_2:10521976-10521995 Msa0055490:CDS 25.0%
!!! TATTCTGTGGCTTATTTTTA+TGG - chr1_2:10522004-10522023 Msa0055490:CDS 25.0%
! TAAATGAAGAAAAGTCTAAG+GGG + chr1_2:10520094-10520113 None:intergenic 25.0%
! CTAAATGAAGAAAAGTCTAA+GGG + chr1_2:10520095-10520114 None:intergenic 25.0%
! TCTAAATGAAGAAAAGTCTA+AGG + chr1_2:10520096-10520115 None:intergenic 25.0%
!! ACCCTTAAATTTTATTGAAG+AGG - chr1_2:10520313-10520332 Msa0055490:CDS 25.0%
! CCCATATCATAAATTTGTAA+TGG + chr1_2:10520668-10520687 None:intergenic 25.0%
! AGTGTAAAATGAAAAGATCA+AGG + chr1_2:10520876-10520895 None:intergenic 25.0%
! AAAATCCTATGATATATGGT+TGG - chr1_2:10520915-10520934 Msa0055490:intron 25.0%
! TATAAATGCTCATCATATAG+AGG - chr1_2:10520969-10520988 Msa0055490:intron 25.0%
! TTTGTAAGTGAGTGAAAATA+GGG + chr1_2:10521159-10521178 None:intergenic 25.0%
!! TTTTGTAAGTGAGTGAAAAT+AGG + chr1_2:10521160-10521179 None:intergenic 25.0%
! TTTCACTCACTTACAAAAAT+TGG - chr1_2:10521162-10521181 Msa0055490:intron 25.0%
!!! GGTTTTGTTTTTGTATACAA+TGG - chr1_2:10521277-10521296 Msa0055490:intron 25.0%
!! GTTTTTGTATACAATGGAAT+AGG - chr1_2:10521283-10521302 Msa0055490:intron 25.0%
! TACAATATAGTTTGAATCTC+CGG + chr1_2:10521422-10521441 None:intergenic 25.0%
! TTTCACAAGAACAAAACAAA+TGG - chr1_2:10521690-10521709 Msa0055490:CDS 25.0%
! TTCACAAGAACAAAACAAAT+GGG - chr1_2:10521691-10521710 Msa0055490:CDS 25.0%
!! AAATATTCAAAGAAGGTGTA+GGG - chr1_2:10521855-10521874 Msa0055490:CDS 25.0%
! TGTTGTTGTGAATGATATTA+GGG - chr1_2:10521976-10521995 Msa0055490:CDS 25.0%
!!! TATTCTGTGGCTTATTTTTA+TGG - chr1_2:10522004-10522023 Msa0055490:CDS 25.0%
TATGACAATCATGATGAAGA+TGG - chr1_2:10520188-10520207 Msa0055490:CDS 30.0%
GGATCATTGAGATCAATAAT+TGG + chr1_2:10520224-10520243 None:intergenic 30.0%
CATGAAGGATTCACAATTAT+GGG - chr1_2:10520464-10520483 Msa0055490:CDS 30.0%
ATGAAGGATTCACAATTATG+GGG - chr1_2:10520465-10520484 Msa0055490:CDS 30.0%
!! TCTTTTTAGCATCATTGGAT+GGG + chr1_2:10520493-10520512 None:intergenic 30.0%
!! ATCTTTTTAGCATCATTGGA+TGG + chr1_2:10520494-10520513 None:intergenic 30.0%
GATCCAAATCCTATGATATA+TGG - chr1_2:10520991-10521010 Msa0055490:intron 30.0%
TTGTATACAATGGAATAGGT+AGG - chr1_2:10521287-10521306 Msa0055490:intron 30.0%
AATGTGAAAACATGAAGACA+AGG + chr1_2:10521343-10521362 None:intergenic 30.0%
AAACTAATGACTAACTGATC+CGG - chr1_2:10521400-10521419 Msa0055490:intron 30.0%
! TTTTGTGTGTAGTGACATAA+TGG - chr1_2:10521598-10521617 Msa0055490:intron 30.0%
GGACTTCAAATATTCAAAGA+AGG - chr1_2:10521848-10521867 Msa0055490:CDS 30.0%
! CAAATATTCAAAGAAGGTGT+AGG - chr1_2:10521854-10521873 Msa0055490:CDS 30.0%
GTGTTAACAACAAGTGTATT+TGG + chr1_2:10521902-10521921 None:intergenic 30.0%
!! AATACACTTGTTGTTAACAC+TGG - chr1_2:10521902-10521921 Msa0055490:CDS 30.0%
! GTGTTGTTGTGAATGATATT+AGG - chr1_2:10521975-10521994 Msa0055490:CDS 30.0%
TATTAGGGATAGATATTCTG+TGG - chr1_2:10521991-10522010 Msa0055490:CDS 30.0%
AGAAACCAAATAATCAACTG+GGG + chr1_2:10522032-10522051 None:intergenic 30.0%
GAGAAACCAAATAATCAACT+GGG + chr1_2:10522033-10522052 None:intergenic 30.0%
! TTGATTATTTGGTTTCTCCT+TGG - chr1_2:10522035-10522054 Msa0055490:CDS 30.0%
! TGATTATTTGGTTTCTCCTT+GGG - chr1_2:10522036-10522055 Msa0055490:CDS 30.0%
AATCCCAATATAATCCTTGA+CGG + chr1_2:10522098-10522117 None:intergenic 30.0%
GGATTAAAGCCAAGAATTTA+GGG - chr1_2:10522113-10522132 Msa0055490:CDS 30.0%
GATTAAAGCCAAGAATTTAG+GGG - chr1_2:10522114-10522133 Msa0055490:CDS 30.0%
ATTAAAGCCAAGAATTTAGG+GGG - chr1_2:10522115-10522134 Msa0055490:CDS 30.0%
TATGACAATCATGATGAAGA+TGG - chr1_2:10520188-10520207 Msa0055490:CDS 30.0%
GGATCATTGAGATCAATAAT+TGG + chr1_2:10520224-10520243 None:intergenic 30.0%
CATGAAGGATTCACAATTAT+GGG - chr1_2:10520464-10520483 Msa0055490:CDS 30.0%
ATGAAGGATTCACAATTATG+GGG - chr1_2:10520465-10520484 Msa0055490:CDS 30.0%
!! TCTTTTTAGCATCATTGGAT+GGG + chr1_2:10520493-10520512 None:intergenic 30.0%
!! ATCTTTTTAGCATCATTGGA+TGG + chr1_2:10520494-10520513 None:intergenic 30.0%
GATCCAAATCCTATGATATA+TGG - chr1_2:10520991-10521010 Msa0055490:intron 30.0%
TTGTATACAATGGAATAGGT+AGG - chr1_2:10521287-10521306 Msa0055490:intron 30.0%
AATGTGAAAACATGAAGACA+AGG + chr1_2:10521343-10521362 None:intergenic 30.0%
AAACTAATGACTAACTGATC+CGG - chr1_2:10521400-10521419 Msa0055490:intron 30.0%
! TTTTGTGTGTAGTGACATAA+TGG - chr1_2:10521598-10521617 Msa0055490:intron 30.0%
GGACTTCAAATATTCAAAGA+AGG - chr1_2:10521848-10521867 Msa0055490:CDS 30.0%
! CAAATATTCAAAGAAGGTGT+AGG - chr1_2:10521854-10521873 Msa0055490:CDS 30.0%
GTGTTAACAACAAGTGTATT+TGG + chr1_2:10521902-10521921 None:intergenic 30.0%
!! AATACACTTGTTGTTAACAC+TGG - chr1_2:10521902-10521921 Msa0055490:CDS 30.0%
! GTGTTGTTGTGAATGATATT+AGG - chr1_2:10521975-10521994 Msa0055490:CDS 30.0%
TATTAGGGATAGATATTCTG+TGG - chr1_2:10521991-10522010 Msa0055490:CDS 30.0%
AGAAACCAAATAATCAACTG+GGG + chr1_2:10522032-10522051 None:intergenic 30.0%
GAGAAACCAAATAATCAACT+GGG + chr1_2:10522033-10522052 None:intergenic 30.0%
! TTGATTATTTGGTTTCTCCT+TGG - chr1_2:10522035-10522054 Msa0055490:CDS 30.0%
! TGATTATTTGGTTTCTCCTT+GGG - chr1_2:10522036-10522055 Msa0055490:CDS 30.0%
AATCCCAATATAATCCTTGA+CGG + chr1_2:10522098-10522117 None:intergenic 30.0%
GGATTAAAGCCAAGAATTTA+GGG - chr1_2:10522113-10522132 Msa0055490:CDS 30.0%
GATTAAAGCCAAGAATTTAG+GGG - chr1_2:10522114-10522133 Msa0055490:CDS 30.0%
ATTAAAGCCAAGAATTTAGG+GGG - chr1_2:10522115-10522134 Msa0055490:CDS 30.0%
TAATATGATGAAGCTGCAGA+GGG + chr1_2:10520070-10520089 None:intergenic 35.0%
ATAATATGATGAAGCTGCAG+AGG + chr1_2:10520071-10520090 None:intergenic 35.0%
TGGTCTCAATCTAATGATGA+TGG - chr1_2:10520137-10520156 Msa0055490:CDS 35.0%
AGTGATGATTTCACATCCAA+TGG - chr1_2:10520161-10520180 Msa0055490:CDS 35.0%
ATGATTGTCATAGCATCCAT+TGG + chr1_2:10520180-10520199 None:intergenic 35.0%
TCTCAATGATCCTAATGCTA+TGG - chr1_2:10520232-10520251 Msa0055490:CDS 35.0%
CCTATTTGTTCCATAGCATT+AGG + chr1_2:10520245-10520264 None:intergenic 35.0%
CCTAATGCTATGGAACAAAT+AGG - chr1_2:10520242-10520261 Msa0055490:CDS 35.0%
GTATGCCATGATTCTTCAAT+TGG + chr1_2:10520295-10520314 None:intergenic 35.0%
TATTGAAGAGGTTGAAGAAG+AGG - chr1_2:10520325-10520344 Msa0055490:CDS 35.0%
GCATGAAGGATTCACAATTA+TGG - chr1_2:10520463-10520482 Msa0055490:CDS 35.0%
!! CTTTTTAGCATCATTGGATG+GGG + chr1_2:10520492-10520511 None:intergenic 35.0%
!! CCAGATCTTTTTAGCATCAT+TGG + chr1_2:10520498-10520517 None:intergenic 35.0%
CCAATGATGCTAAAAAGATC+TGG - chr1_2:10520495-10520514 Msa0055490:CDS 35.0%
CAAAACCGTTTGTAGTCATT+AGG + chr1_2:10520521-10520540 None:intergenic 35.0%
! CTAATGACTACAAACGGTTT+TGG - chr1_2:10520519-10520538 Msa0055490:CDS 35.0%
!! ACTAGTCACTTTAGAGTGTA+AGG - chr1_2:10520711-10520730 Msa0055490:intron 35.0%
CTAAGCCAACCATATATCAT+AGG + chr1_2:10520923-10520942 None:intergenic 35.0%
!! CTATGATATATGGTTGGCTT+AGG - chr1_2:10520921-10520940 Msa0055490:intron 35.0%
TTCGCAATATATAGCAGTTC+TGG + chr1_2:10520949-10520968 None:intergenic 35.0%
CAGCCATATATCATAGGATT+TGG + chr1_2:10520997-10521016 None:intergenic 35.0%
CAAATCCTATGATATATGGC+TGG - chr1_2:10520995-10521014 Msa0055490:intron 35.0%
TTTAGCCAGCCATATATCAT+AGG + chr1_2:10521003-10521022 None:intergenic 35.0%
TGAAAACATGAAGACAAGGT+CGG + chr1_2:10521339-10521358 None:intergenic 35.0%
!!! CCTAGTACTTACTTTTTGTG+GGG + chr1_2:10521368-10521387 None:intergenic 35.0%
!!! CCCTAGTACTTACTTTTTGT+GGG + chr1_2:10521369-10521388 None:intergenic 35.0%
CCCACAAAAAGTAAGTACTA+GGG - chr1_2:10521366-10521385 Msa0055490:intron 35.0%
!!! TCCCTAGTACTTACTTTTTG+TGG + chr1_2:10521370-10521389 None:intergenic 35.0%
! CTAGTGTCTTCATTTGCTTT+TGG + chr1_2:10521631-10521650 None:intergenic 35.0%
CAAGAACAAAACAAATGGGT+TGG - chr1_2:10521695-10521714 Msa0055490:CDS 35.0%
TTGATGGAGGATTGTGAAAA+GGG + chr1_2:10521816-10521835 None:intergenic 35.0%
TTTGATGGAGGATTGTGAAA+AGG + chr1_2:10521817-10521836 None:intergenic 35.0%
! CATTTGTTTGACTTTGATGG+AGG + chr1_2:10521829-10521848 None:intergenic 35.0%
CTCCATCAAAGTCAAACAAA+TGG - chr1_2:10521827-10521846 Msa0055490:CDS 35.0%
! GTCCATTTGTTTGACTTTGA+TGG + chr1_2:10521832-10521851 None:intergenic 35.0%
ACAACAAGTGTATTTGGATG+AGG + chr1_2:10521896-10521915 None:intergenic 35.0%
GAAACCAAATAATCAACTGG+GGG + chr1_2:10522031-10522050 None:intergenic 35.0%
GGAGAAACCAAATAATCAAC+TGG + chr1_2:10522034-10522053 None:intergenic 35.0%
AAAGAATTATCACCAACCCA+AGG + chr1_2:10522055-10522074 None:intergenic 35.0%
TTGACCGTCAAGGATTATAT+TGG - chr1_2:10522091-10522110 Msa0055490:CDS 35.0%
TGACCGTCAAGGATTATATT+GGG - chr1_2:10522092-10522111 Msa0055490:CDS 35.0%
GGGATTAAAGCCAAGAATTT+AGG - chr1_2:10522112-10522131 Msa0055490:CDS 35.0%
TAATATGATGAAGCTGCAGA+GGG + chr1_2:10520070-10520089 None:intergenic 35.0%
ATAATATGATGAAGCTGCAG+AGG + chr1_2:10520071-10520090 None:intergenic 35.0%
TGGTCTCAATCTAATGATGA+TGG - chr1_2:10520137-10520156 Msa0055490:CDS 35.0%
AGTGATGATTTCACATCCAA+TGG - chr1_2:10520161-10520180 Msa0055490:CDS 35.0%
ATGATTGTCATAGCATCCAT+TGG + chr1_2:10520180-10520199 None:intergenic 35.0%
TCTCAATGATCCTAATGCTA+TGG - chr1_2:10520232-10520251 Msa0055490:CDS 35.0%
CCTATTTGTTCCATAGCATT+AGG + chr1_2:10520245-10520264 None:intergenic 35.0%
CCTAATGCTATGGAACAAAT+AGG - chr1_2:10520242-10520261 Msa0055490:CDS 35.0%
GTATGCCATGATTCTTCAAT+TGG + chr1_2:10520295-10520314 None:intergenic 35.0%
TATTGAAGAGGTTGAAGAAG+AGG - chr1_2:10520325-10520344 Msa0055490:CDS 35.0%
GCATGAAGGATTCACAATTA+TGG - chr1_2:10520463-10520482 Msa0055490:CDS 35.0%
!! CTTTTTAGCATCATTGGATG+GGG + chr1_2:10520492-10520511 None:intergenic 35.0%
!! CCAGATCTTTTTAGCATCAT+TGG + chr1_2:10520498-10520517 None:intergenic 35.0%
CCAATGATGCTAAAAAGATC+TGG - chr1_2:10520495-10520514 Msa0055490:CDS 35.0%
CAAAACCGTTTGTAGTCATT+AGG + chr1_2:10520521-10520540 None:intergenic 35.0%
! CTAATGACTACAAACGGTTT+TGG - chr1_2:10520519-10520538 Msa0055490:CDS 35.0%
!! ACTAGTCACTTTAGAGTGTA+AGG - chr1_2:10520711-10520730 Msa0055490:intron 35.0%
CTAAGCCAACCATATATCAT+AGG + chr1_2:10520923-10520942 None:intergenic 35.0%
!! CTATGATATATGGTTGGCTT+AGG - chr1_2:10520921-10520940 Msa0055490:intron 35.0%
TTCGCAATATATAGCAGTTC+TGG + chr1_2:10520949-10520968 None:intergenic 35.0%
CAGCCATATATCATAGGATT+TGG + chr1_2:10520997-10521016 None:intergenic 35.0%
CAAATCCTATGATATATGGC+TGG - chr1_2:10520995-10521014 Msa0055490:intron 35.0%
TTTAGCCAGCCATATATCAT+AGG + chr1_2:10521003-10521022 None:intergenic 35.0%
TGAAAACATGAAGACAAGGT+CGG + chr1_2:10521339-10521358 None:intergenic 35.0%
!!! CCTAGTACTTACTTTTTGTG+GGG + chr1_2:10521368-10521387 None:intergenic 35.0%
!!! CCCTAGTACTTACTTTTTGT+GGG + chr1_2:10521369-10521388 None:intergenic 35.0%
CCCACAAAAAGTAAGTACTA+GGG - chr1_2:10521366-10521385 Msa0055490:intron 35.0%
!!! TCCCTAGTACTTACTTTTTG+TGG + chr1_2:10521370-10521389 None:intergenic 35.0%
! CTAGTGTCTTCATTTGCTTT+TGG + chr1_2:10521631-10521650 None:intergenic 35.0%
CAAGAACAAAACAAATGGGT+TGG - chr1_2:10521695-10521714 Msa0055490:CDS 35.0%
TTGATGGAGGATTGTGAAAA+GGG + chr1_2:10521816-10521835 None:intergenic 35.0%
TTTGATGGAGGATTGTGAAA+AGG + chr1_2:10521817-10521836 None:intergenic 35.0%
! CATTTGTTTGACTTTGATGG+AGG + chr1_2:10521829-10521848 None:intergenic 35.0%
CTCCATCAAAGTCAAACAAA+TGG - chr1_2:10521827-10521846 Msa0055490:CDS 35.0%
! GTCCATTTGTTTGACTTTGA+TGG + chr1_2:10521832-10521851 None:intergenic 35.0%
ACAACAAGTGTATTTGGATG+AGG + chr1_2:10521896-10521915 None:intergenic 35.0%
GAAACCAAATAATCAACTGG+GGG + chr1_2:10522031-10522050 None:intergenic 35.0%
GGAGAAACCAAATAATCAAC+TGG + chr1_2:10522034-10522053 None:intergenic 35.0%
AAAGAATTATCACCAACCCA+AGG + chr1_2:10522055-10522074 None:intergenic 35.0%
TTGACCGTCAAGGATTATAT+TGG - chr1_2:10522091-10522110 Msa0055490:CDS 35.0%
TGACCGTCAAGGATTATATT+GGG - chr1_2:10522092-10522111 Msa0055490:CDS 35.0%
GGGATTAAAGCCAAGAATTT+AGG - chr1_2:10522112-10522131 Msa0055490:CDS 35.0%
GCCTTCCAATTGAAGAATCA+TGG - chr1_2:10520287-10520306 Msa0055490:CDS 40.0%
GCCATGATTCTTCAATTGGA+AGG + chr1_2:10520291-10520310 None:intergenic 40.0%
! ACTCTTTTCTCTTCCTTCCA+AGG - chr1_2:10520355-10520374 Msa0055490:CDS 40.0%
TCCTTCCAAGGAGAAACTTA+AGG - chr1_2:10520367-10520386 Msa0055490:CDS 40.0%
GAAACTTAAGGCCCTTAGAT+CGG - chr1_2:10520379-10520398 Msa0055490:CDS 40.0%
CACATGAATTTGGGGAAGAA+TGG + chr1_2:10520443-10520462 None:intergenic 40.0%
CATTCTTCCCCAAATTCATG+TGG - chr1_2:10520441-10520460 Msa0055490:CDS 40.0%
CTTCATGCCACATGAATTTG+GGG + chr1_2:10520451-10520470 None:intergenic 40.0%
CCTTCATGCCACATGAATTT+GGG + chr1_2:10520452-10520471 None:intergenic 40.0%
TCCTTCATGCCACATGAATT+TGG + chr1_2:10520453-10520472 None:intergenic 40.0%
TCTGGCCTAATGACTACAAA+CGG - chr1_2:10520513-10520532 Msa0055490:CDS 40.0%
! GTTGCTCACTTTAGAGAAGT+TGG + chr1_2:10520693-10520712 None:intergenic 40.0%
CCCCACAAAAAGTAAGTACT+AGG - chr1_2:10521365-10521384 Msa0055490:intron 40.0%
!! GTTGGTTCTAACAACCATGT+TGG - chr1_2:10521713-10521732 Msa0055490:CDS 40.0%
TTAGTTGCATTGCTCCAACA+TGG + chr1_2:10521730-10521749 None:intergenic 40.0%
!!! ACCCATTGCTTTTTTTGGGT+CGG + chr1_2:10521771-10521790 None:intergenic 40.0%
!!! CCAGACCCATTGCTTTTTTT+GGG + chr1_2:10521775-10521794 None:intergenic 40.0%
! TATTTGGTTTCTCCTTGGGT+TGG - chr1_2:10522040-10522059 Msa0055490:CDS 40.0%
GCCTTCCAATTGAAGAATCA+TGG - chr1_2:10520287-10520306 Msa0055490:CDS 40.0%
GCCATGATTCTTCAATTGGA+AGG + chr1_2:10520291-10520310 None:intergenic 40.0%
! ACTCTTTTCTCTTCCTTCCA+AGG - chr1_2:10520355-10520374 Msa0055490:CDS 40.0%
TCCTTCCAAGGAGAAACTTA+AGG - chr1_2:10520367-10520386 Msa0055490:CDS 40.0%
GAAACTTAAGGCCCTTAGAT+CGG - chr1_2:10520379-10520398 Msa0055490:CDS 40.0%
CACATGAATTTGGGGAAGAA+TGG + chr1_2:10520443-10520462 None:intergenic 40.0%
CATTCTTCCCCAAATTCATG+TGG - chr1_2:10520441-10520460 Msa0055490:CDS 40.0%
CTTCATGCCACATGAATTTG+GGG + chr1_2:10520451-10520470 None:intergenic 40.0%
CCTTCATGCCACATGAATTT+GGG + chr1_2:10520452-10520471 None:intergenic 40.0%
TCCTTCATGCCACATGAATT+TGG + chr1_2:10520453-10520472 None:intergenic 40.0%
TCTGGCCTAATGACTACAAA+CGG - chr1_2:10520513-10520532 Msa0055490:CDS 40.0%
! GTTGCTCACTTTAGAGAAGT+TGG + chr1_2:10520693-10520712 None:intergenic 40.0%
CCCCACAAAAAGTAAGTACT+AGG - chr1_2:10521365-10521384 Msa0055490:intron 40.0%
!! GTTGGTTCTAACAACCATGT+TGG - chr1_2:10521713-10521732 Msa0055490:CDS 40.0%
TTAGTTGCATTGCTCCAACA+TGG + chr1_2:10521730-10521749 None:intergenic 40.0%
!!! ACCCATTGCTTTTTTTGGGT+CGG + chr1_2:10521771-10521790 None:intergenic 40.0%
!!! CCAGACCCATTGCTTTTTTT+GGG + chr1_2:10521775-10521794 None:intergenic 40.0%
! TATTTGGTTTCTCCTTGGGT+TGG - chr1_2:10522040-10522059 Msa0055490:CDS 40.0%
CTTTGCCTGATTCACATGCA+TGG - chr1_2:10520117-10520136 Msa0055490:CDS 45.0%
TGAGACCATGCATGTGAATC+AGG + chr1_2:10520125-10520144 None:intergenic 45.0%
GCCTTAAGTTTCTCCTTGGA+AGG + chr1_2:10520371-10520390 None:intergenic 45.0%
AAGGGCCTTAAGTTTCTCCT+TGG + chr1_2:10520375-10520394 None:intergenic 45.0%
TATTCGTGCTCTACCGTATC+CGG + chr1_2:10520417-10520436 None:intergenic 45.0%
CCCAAATTCATGTGGCATGA+AGG - chr1_2:10520449-10520468 Msa0055490:CDS 45.0%
TCATGCACTTTCATGCAACG+TGG - chr1_2:10520564-10520583 Msa0055490:CDS 45.0%
CATGCAACGTGGACAATCAT+AGG - chr1_2:10520575-10520594 Msa0055490:CDS 45.0%
!!! TTTTTGGGTCGGGACAACAT+GGG + chr1_2:10521760-10521779 None:intergenic 45.0%
!!! TTTTTTGGGTCGGGACAACA+TGG + chr1_2:10521761-10521780 None:intergenic 45.0%
TCCCGACCCAAAAAAAGCAA+TGG - chr1_2:10521766-10521785 Msa0055490:CDS 45.0%
!!! CCCATTGCTTTTTTTGGGTC+GGG + chr1_2:10521770-10521789 None:intergenic 45.0%
CCCGACCCAAAAAAAGCAAT+GGG - chr1_2:10521767-10521786 Msa0055490:CDS 45.0%
CCCAAAAAAAGCAATGGGTC+TGG - chr1_2:10521772-10521791 Msa0055490:CDS 45.0%
!!! GCCAGACCCATTGCTTTTTT+TGG + chr1_2:10521776-10521795 None:intergenic 45.0%
AAAGGGATGTGTCTGTGTGT+GGG + chr1_2:10521799-10521818 None:intergenic 45.0%
AAAAGGGATGTGTCTGTGTG+TGG + chr1_2:10521800-10521819 None:intergenic 45.0%
TGGACCCCCAGTTGATTATT+TGG - chr1_2:10522024-10522043 Msa0055490:CDS 45.0%
! TTTTCGTGCTTTGACCGTCA+AGG - chr1_2:10522081-10522100 Msa0055490:CDS 45.0%
! CAAAGCACCCCCTAAATTCT+TGG + chr1_2:10522125-10522144 None:intergenic 45.0%
CTTTGCCTGATTCACATGCA+TGG - chr1_2:10520117-10520136 Msa0055490:CDS 45.0%
TGAGACCATGCATGTGAATC+AGG + chr1_2:10520125-10520144 None:intergenic 45.0%
GCCTTAAGTTTCTCCTTGGA+AGG + chr1_2:10520371-10520390 None:intergenic 45.0%
AAGGGCCTTAAGTTTCTCCT+TGG + chr1_2:10520375-10520394 None:intergenic 45.0%
TATTCGTGCTCTACCGTATC+CGG + chr1_2:10520417-10520436 None:intergenic 45.0%
CCCAAATTCATGTGGCATGA+AGG - chr1_2:10520449-10520468 Msa0055490:CDS 45.0%
TCATGCACTTTCATGCAACG+TGG - chr1_2:10520564-10520583 Msa0055490:CDS 45.0%
CATGCAACGTGGACAATCAT+AGG - chr1_2:10520575-10520594 Msa0055490:CDS 45.0%
!!! TTTTTGGGTCGGGACAACAT+GGG + chr1_2:10521760-10521779 None:intergenic 45.0%
!!! TTTTTTGGGTCGGGACAACA+TGG + chr1_2:10521761-10521780 None:intergenic 45.0%
TCCCGACCCAAAAAAAGCAA+TGG - chr1_2:10521766-10521785 Msa0055490:CDS 45.0%
!!! CCCATTGCTTTTTTTGGGTC+GGG + chr1_2:10521770-10521789 None:intergenic 45.0%
CCCGACCCAAAAAAAGCAAT+GGG - chr1_2:10521767-10521786 Msa0055490:CDS 45.0%
CCCAAAAAAAGCAATGGGTC+TGG - chr1_2:10521772-10521791 Msa0055490:CDS 45.0%
!!! GCCAGACCCATTGCTTTTTT+TGG + chr1_2:10521776-10521795 None:intergenic 45.0%
AAAGGGATGTGTCTGTGTGT+GGG + chr1_2:10521799-10521818 None:intergenic 45.0%
AAAAGGGATGTGTCTGTGTG+TGG + chr1_2:10521800-10521819 None:intergenic 45.0%
TGGACCCCCAGTTGATTATT+TGG - chr1_2:10522024-10522043 Msa0055490:CDS 45.0%
! TTTTCGTGCTTTGACCGTCA+AGG - chr1_2:10522081-10522100 Msa0055490:CDS 45.0%
! CAAAGCACCCCCTAAATTCT+TGG + chr1_2:10522125-10522144 None:intergenic 45.0%
!! TATATATATATATATATTGT+AGG - chr1_2:10520812-10520831 Msa0055490:intron 5.0%
!!! TTTTATTAAACTAAAATAAA+AGG - chr1_2:10521116-10521135 Msa0055490:intron 5.0%
!! TTTAAATAAAAAAAATGAAA+TGG + chr1_2:10521505-10521524 None:intergenic 5.0%
!! TATATATATATATATATTGT+AGG - chr1_2:10520812-10520831 Msa0055490:intron 5.0%
!!! TTTTATTAAACTAAAATAAA+AGG - chr1_2:10521116-10521135 Msa0055490:intron 5.0%
!! TTTAAATAAAAAAAATGAAA+TGG + chr1_2:10521505-10521524 None:intergenic 5.0%
TAGGCCTTGCATGTGAGAAG+TGG - chr1_2:10520261-10520280 Msa0055490:CDS 50.0%
AGGCCTTGCATGTGAGAAGT+GGG - chr1_2:10520262-10520281 Msa0055490:CDS 50.0%
! CAACACAAGATGGCGGCAAA+CGG + chr1_2:10521316-10521335 None:intergenic 50.0%
ACAAGGTCGGCAACACAAGA+TGG + chr1_2:10521326-10521345 None:intergenic 50.0%
AAGGGATGTGTCTGTGTGTG+GGG + chr1_2:10521798-10521817 None:intergenic 50.0%
AGGTGTAGGGTATGTTCCTG+TGG - chr1_2:10521868-10521887 Msa0055490:CDS 50.0%
GTATTTGGATGAGGCTCCAC+AGG + chr1_2:10521887-10521906 None:intergenic 50.0%
ACGGTCAAAGCACGAAAACG+TGG + chr1_2:10522079-10522098 None:intergenic 50.0%
TAGGCCTTGCATGTGAGAAG+TGG - chr1_2:10520261-10520280 Msa0055490:CDS 50.0%
AGGCCTTGCATGTGAGAAGT+GGG - chr1_2:10520262-10520281 Msa0055490:CDS 50.0%
! CAACACAAGATGGCGGCAAA+CGG + chr1_2:10521316-10521335 None:intergenic 50.0%
ACAAGGTCGGCAACACAAGA+TGG + chr1_2:10521326-10521345 None:intergenic 50.0%
AAGGGATGTGTCTGTGTGTG+GGG + chr1_2:10521798-10521817 None:intergenic 50.0%
AGGTGTAGGGTATGTTCCTG+TGG - chr1_2:10521868-10521887 Msa0055490:CDS 50.0%
GTATTTGGATGAGGCTCCAC+AGG + chr1_2:10521887-10521906 None:intergenic 50.0%
ACGGTCAAAGCACGAAAACG+TGG + chr1_2:10522079-10522098 None:intergenic 50.0%
CTGCAGAGGGTGATCACGAT+AGG + chr1_2:10520057-10520076 None:intergenic 55.0%
GGCCTTGCATGTGAGAAGTG+GGG - chr1_2:10520263-10520282 Msa0055490:CDS 55.0%
CACCCCACTTCTCACATGCA+AGG + chr1_2:10520268-10520287 None:intergenic 55.0%
CTTAAGGCCCTTAGATCGGC+CGG - chr1_2:10520383-10520402 Msa0055490:CDS 55.0%
AGGTCGGCAACACAAGATGG+CGG + chr1_2:10521323-10521342 None:intergenic 55.0%
CTGCAGAGGGTGATCACGAT+AGG + chr1_2:10520057-10520076 None:intergenic 55.0%
GGCCTTGCATGTGAGAAGTG+GGG - chr1_2:10520263-10520282 Msa0055490:CDS 55.0%
CACCCCACTTCTCACATGCA+AGG + chr1_2:10520268-10520287 None:intergenic 55.0%
CTTAAGGCCCTTAGATCGGC+CGG - chr1_2:10520383-10520402 Msa0055490:CDS 55.0%
AGGTCGGCAACACAAGATGG+CGG + chr1_2:10521323-10521342 None:intergenic 55.0%
AAGGCCCTTAGATCGGCCGG+CGG - chr1_2:10520386-10520405 Msa0055490:CDS 65.0%
AAGGCCCTTAGATCGGCCGG+CGG - chr1_2:10520386-10520405 Msa0055490:CDS 65.0%
GCCCTTAGATCGGCCGGCGG+CGG - chr1_2:10520389-10520408 Msa0055490:CDS 75.0%
GCCGCCGCCGGCCGATCTAA+GGG + chr1_2:10520393-10520412 None:intergenic 75.0%
TGCCGCCGCCGGCCGATCTA+AGG + chr1_2:10520394-10520413 None:intergenic 75.0%
!! ACCGTATCCGGTGCCGCCGC+CGG + chr1_2:10520405-10520424 None:intergenic 75.0%
GCCCTTAGATCGGCCGGCGG+CGG - chr1_2:10520389-10520408 Msa0055490:CDS 75.0%
GCCGCCGCCGGCCGATCTAA+GGG + chr1_2:10520393-10520412 None:intergenic 75.0%
TGCCGCCGCCGGCCGATCTA+AGG + chr1_2:10520394-10520413 None:intergenic 75.0%
!! ACCGTATCCGGTGCCGCCGC+CGG + chr1_2:10520405-10520424 None:intergenic 75.0%
! AGATCGGCCGGCGGCGGCAC+CGG - chr1_2:10520395-10520414 Msa0055490:CDS 80.0%
!! GCCGGCGGCGGCACCGGATA+CGG - chr1_2:10520401-10520420 Msa0055490:CDS 80.0%
! AGATCGGCCGGCGGCGGCAC+CGG - chr1_2:10520395-10520414 Msa0055490:CDS 80.0%
!! GCCGGCGGCGGCACCGGATA+CGG - chr1_2:10520401-10520420 Msa0055490:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 10520032 10522180 10520032 ID=Msa0055490;Name=Msa0055490
chr1_2 mRNA 10520032 10522180 10520032 ID=Msa0055490-mRNA-1;Parent=Msa0055490;Name=Msa0055490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|359
chr1_2 exon 10521672 10522180 10521672 ID=Msa0055490-mRNA-1:exon:4025;Parent=Msa0055490-mRNA-1
chr1_2 exon 10520032 10520602 10520032 ID=Msa0055490-mRNA-1:exon:4024;Parent=Msa0055490-mRNA-1
chr1_2 CDS 10521672 10522180 10521672 ID=Msa0055490-mRNA-1:cds;Parent=Msa0055490-mRNA-1
chr1_2 CDS 10520032 10520602 10520032 ID=Msa0055490-mRNA-1:cds;Parent=Msa0055490-mRNA-1
Gene Sequence

>Msa0055490

ATGGCTACTACTCTTTCTGAAGCCTATCGTGATCACCCTCTGCAGCTTCATCATATTATCCCCTTAGACTTTTCTTCATTTAGAACTTTGCCTGATTCACATGCATGGTCTCAATCTAATGATGATGGTAGTGATGATTTCACATCCAATGGATGCTATGACAATCATGATGAAGATGGATCATGCATACCAATTATTGATCTCAATGATCCTAATGCTATGGAACAAATAGGCCTTGCATGTGAGAAGTGGGGTGCCTTCCAATTGAAGAATCATGGCATACCCTTAAATTTTATTGAAGAGGTTGAAGAAGAGGCAAAGAGACTCTTTTCTCTTCCTTCCAAGGAGAAACTTAAGGCCCTTAGATCGGCCGGCGGCGGCACCGGATACGGTAGAGCACGAATATCACCATTCTTCCCCAAATTCATGTGGCATGAAGGATTCACAATTATGGGGTCCCCATCCAATGATGCTAAAAAGATCTGGCCTAATGACTACAAACGGTTTTGTGACATAATGGAGAACTACCAAAAGCAAATGAAGACACTAGCAGAGAAACTAACAAACATGATATTCAACATATTAGGAATTTCACAAGAACAAAACAAATGGGTTGGTTCTAACAACCATGTTGGAGCAATGCAACTAAACTTCTACCCATGTTGTCCCGACCCAAAAAAAGCAATGGGTCTGGCCCCACACACAGACACATCCCTTTTCACAATCCTCCATCAAAGTCAAACAAATGGACTTCAAATATTCAAAGAAGGTGTAGGGTATGTTCCTGTGGAGCCTCATCCAAATACACTTGTTGTTAACACTGGTGACATTCTTCATATATTGTCAAATTCAAGGTTTCGATGTTCACTTCATCGTGTTGTTGTGAATGATATTAGGGATAGATATTCTGTGGCTTATTTTTATGGACCCCCAGTTGATTATTTGGTTTCTCCTTGGGTTGGTGATAATTCTTTGCCACGTTTTCGTGCTTTGACCGTCAAGGATTATATTGGGATTAAAGCCAAGAATTTAGGGGGTGCTTTGTCTTTGATTAGTACATTACTTGATCATGATGACTAA
Protein sequence

>Msa0055490

MATTLSEAYRDHPLQLHHIIPLDFSSFRTLPDSHAWSQSNDDGSDDFTSNGCYDNHDEDGSCIPIIDLNDPNAMEQIGLACEKWGAFQLKNHGIPLNFIEEVEEEAKRLFSLPSKEKLKALRSAGGGTGYGRARISPFFPKFMWHEGFTIMGSPSNDAKKIWPNDYKRFCDIMENYQKQMKTLAEKLTNMIFNILGISQEQNKWVGSNNHVGAMQLNFYPCCPDPKKAMGLAPHTDTSLFTILHQSQTNGLQIFKEGVGYVPVEPHPNTLVVNTGDILHILSNSRFRCSLHRVVVNDIRDRYSVAYFYGPPVDYLVSPWVGDNSLPRFRALTVKDYIGIKAKNLGGALSLISTLLDHDD*