AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719330 MtrunA17_Chr5g0409821 99.270 411 3 0 1 411 1 411 0.0 849
Msa0719330 MtrunA17_Chr4g0057631 30.645 124 83 2 137 257 90 213 7.50e-13 70.1
Msa0719330 MtrunA17_Chr7g0225691 28.302 159 111 2 137 292 110 268 9.33e-13 69.7
Msa0719330 MtrunA17_Chr6g0457931 36.667 90 56 1 169 257 5 94 1.84e-12 68.2
Msa0719330 MtrunA17_Chr3g0102981 26.752 157 114 1 137 292 105 261 5.49e-12 67.4
Msa0719330 MtrunA17_Chr5g0447081 26.415 159 114 2 137 292 105 263 3.52e-11 64.7
Msa0719330 MtrunA17_Chr4g0037431 25.907 193 112 6 66 253 90 256 5.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719330 AT1G32060.1 80.872 413 59 5 1 411 1 395 0.0 679
Msa0719330 AT3G27440.1 24.681 235 154 5 64 293 28 244 1.04e-15 79.3
Msa0719330 AT3G27440.2 24.681 235 154 5 64 293 28 244 1.39e-15 78.6
Msa0719330 AT3G27440.3 25.843 178 129 3 119 293 20 197 1.72e-14 75.1
Msa0719330 AT3G27190.1 33.065 124 80 2 137 257 119 242 2.84e-14 74.7
Msa0719330 AT1G55810.7 26.000 200 124 5 64 257 33 214 8.92e-14 73.2
Msa0719330 AT1G55810.2 26.000 200 124 5 64 257 43 224 9.43e-14 73.2
Msa0719330 AT1G55810.5 30.645 124 83 2 137 257 101 224 9.56e-14 73.2
Msa0719330 AT1G55810.4 30.645 124 83 2 137 257 101 224 9.56e-14 73.2
Msa0719330 AT1G55810.3 26.000 200 124 5 64 257 43 224 1.05e-13 73.2
Msa0719330 AT1G55810.1 26.000 200 124 5 64 257 43 224 1.05e-13 73.2
Msa0719330 AT1G55810.6 26.000 200 124 5 64 257 43 224 1.05e-13 73.2
Msa0719330 AT5G40870.1 28.302 159 111 2 137 292 119 277 4.73e-13 71.2
Msa0719330 AT1G26190.1 26.368 201 109 7 66 257 66 236 8.77e-11 64.3

Find 99 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCAATGACCAAGATTT+TGG 0.150126 5_1:+14407526 None:intergenic
AGTATTTAACACCCTCTTTC+TGG 0.157752 5_1:+14406215 None:intergenic
TTCTCGAGTCAGAGATCTTT+TGG 0.212624 5_1:-14406928 Msa0719330:CDS
TAATCATGTTACTGGTCTTT+TGG 0.213994 5_1:-14407573 Msa0719330:CDS
TTTGGATGATTACCATTCTT+TGG 0.234705 5_1:-14407717 Msa0719330:CDS
AGTGACTTCTCCATAGAATT+TGG 0.257225 5_1:+14404890 None:intergenic
CCTATTTATAATCATGTTAC+TGG 0.259857 5_1:-14407581 Msa0719330:CDS
TTGTTCTCTCTTTCTCTCTA+AGG 0.263380 5_1:+14408099 None:intergenic
TCTTATCTTCAAACCAACTA+TGG 0.263816 5_1:+14404806 None:intergenic
GAAATTTGCTTGGAAAATTC+AGG 0.264484 5_1:-14406871 Msa0719330:intron
AAGTTGGATAGAGGATTATT+TGG 0.283269 5_1:+14408153 None:intergenic
CCAGTAACATGATTATAAAT+AGG 0.295466 5_1:+14407581 None:intergenic
CCAATATAAGCTTCAAAATC+AGG 0.308836 5_1:+14406675 None:intergenic
GAGTCAGGGTTTCCACCTTT+TGG 0.320180 5_1:+14407776 None:intergenic
TATATATACATACATAATAT+TGG 0.332409 5_1:-14404707 Msa0719330:three_prime_UTR
CATTATCATCTGGAATTAGT+TGG 0.339527 5_1:+14406266 None:intergenic
CCGTCATCAAACAAGTAAAC+TGG 0.339534 5_1:+14406187 None:intergenic
CTGATAAGTGTGTTTGAGTC+AGG 0.348587 5_1:+14407761 None:intergenic
ATGACGGTTCTACAATTTCA+TGG 0.358447 5_1:-14406171 Msa0719330:CDS
ATTGAGATGTTTGTTCTTAG+AGG 0.359760 5_1:+14408031 None:intergenic
ATCTTTCCTTCATTATCATC+TGG 0.360226 5_1:+14406256 None:intergenic
TCATTTCCTTTGTAAGTCTC+TGG 0.363648 5_1:+14406091 None:intergenic
AAGAAGAAGTGAGTTTAAGT+TGG 0.366190 5_1:+14408137 None:intergenic
ATTGGTCTAGCAGCTGATTC+AGG 0.370444 5_1:-14407860 Msa0719330:CDS
TATTAAACCACCCAAAATCT+TGG 0.372303 5_1:-14407537 Msa0719330:CDS
AGTTGGATAGAGGATTATTT+GGG 0.372468 5_1:+14408154 None:intergenic
AACCTCTCTTCCAAATTCTA+TGG 0.381744 5_1:-14404900 Msa0719330:CDS
ATATTCATATGCATGGACTA+TGG 0.386337 5_1:+14404465 None:intergenic
TCTTCAAACCAACTATGGTT+TGG 0.386867 5_1:+14404811 None:intergenic
AGTGAGTTTAAGTTGGATAG+AGG 0.388378 5_1:+14408144 None:intergenic
ATATTATGTATGTATATATA+AGG 0.388663 5_1:+14404710 None:intergenic
CCCAAAATCTTGGTCATTGA+AGG 0.390954 5_1:-14407527 Msa0719330:CDS
TAAGCTTTAGCTGCTCCTAC+TGG 0.408909 5_1:+14404744 None:intergenic
ATTATCATCTGGAATTAGTT+GGG 0.412929 5_1:+14406267 None:intergenic
TGGAAGAGAGGTTGCTTAAG+TGG 0.427841 5_1:+14404910 None:intergenic
TTTGAACAATTTGTCATCAC+TGG 0.433037 5_1:-14404500 Msa0719330:three_prime_UTR
CACAACCACTGTGATATGTT+TGG 0.440482 5_1:-14407735 Msa0719330:CDS
CCTGTTCCATTGTTGCTACC+AGG 0.444673 5_1:+14404840 None:intergenic
TACCATTCTTTGGATAGAAC+TGG 0.449333 5_1:-14407707 Msa0719330:CDS
ATAGGTGTCAGTTGTGGAAA+TGG 0.452646 5_1:-14404976 Msa0719330:intron
TACCAGTTCTATCCAAAGAA+TGG 0.458109 5_1:+14407705 None:intergenic
GCAATGAGGTGAAATTTGCT+TGG 0.466967 5_1:-14406881 Msa0719330:CDS
TCATCTGGAATTAGTTGGGT+TGG 0.467987 5_1:+14406271 None:intergenic
CAAAACAAAGGGAGTTTAGC+AGG 0.468657 5_1:+14408235 None:intergenic
AGATCAAAATCATTAGCTCT+TGG 0.471925 5_1:+14407653 None:intergenic
GGTCTCTTCCAAACCATAGT+TGG 0.473792 5_1:-14404819 Msa0719330:CDS
CCTGGTAGCAACAATGGAAC+AGG 0.476412 5_1:-14404840 Msa0719330:CDS
TTGAGCAGATAGTAGCAAGC+AGG 0.481692 5_1:-14404776 Msa0719330:CDS
AGTAGGAGCAGCTAAAGCTT+AGG 0.484112 5_1:-14404742 Msa0719330:exon
TTGGGTGGTTTAATAAGCTC+AGG 0.487228 5_1:+14407545 None:intergenic
ACAATAATATTCAGTGAGAA+TGG 0.495990 5_1:-14408080 Msa0719330:exon
CTAGCAGCTGATTCAGGATG+TGG 0.497361 5_1:-14407854 Msa0719330:CDS
TTTGTAAGTCTCTGGTCCAT+AGG 0.514381 5_1:+14406099 None:intergenic
CTCCATAGAATTTGGAAGAG+AGG 0.516431 5_1:+14404898 None:intergenic
TATGTATGTATATATAAGGC+AGG 0.519140 5_1:+14404714 None:intergenic
CCATAGGAAAATTTAATGCC+AGG 0.522813 5_1:+14406115 None:intergenic
AAACTTACATGCTCTTATCC+TGG 0.529194 5_1:-14406133 Msa0719330:CDS
GAACTTTAAATCAAAACAAA+GGG 0.529797 5_1:+14408224 None:intergenic
CCAGTTTACTTGTTTGATGA+CGG 0.531064 5_1:-14406187 Msa0719330:CDS
TACTTGATAACATGTGGAGC+AGG 0.532032 5_1:-14407902 Msa0719330:CDS
CTAATTCCAGATGATAATGA+AGG 0.532317 5_1:-14406262 Msa0719330:CDS
GACTCACAGACAATTGTGAT+TGG 0.537034 5_1:-14407878 Msa0719330:CDS
AAGGAAAGATATTAAGAGTG+AGG 0.539424 5_1:-14406243 Msa0719330:CDS
TGATAAGTGTGTTTGAGTCA+GGG 0.540780 5_1:+14407762 None:intergenic
CTGTTCCATTGTTGCTACCA+GGG 0.541192 5_1:+14404841 None:intergenic
ATGTTGTATTAATAATATAG+AGG 0.542686 5_1:-14404565 Msa0719330:three_prime_UTR
ACAAGTTAAAGCTATTAAAG+AGG 0.546142 5_1:-14407621 Msa0719330:CDS
TGGAACACATAAAATATATG+AGG 0.549816 5_1:+14408199 None:intergenic
GATTTCCCTGGTAGCAACAA+TGG 0.550594 5_1:-14404846 Msa0719330:CDS
AGTGAGGTTGATCCAGAAAG+AGG 0.553461 5_1:-14406227 Msa0719330:CDS
AACATACAATACATGAAATG+TGG 0.565555 5_1:+14404631 None:intergenic
CAAGTTAAAGCTATTAAAGA+GGG 0.566898 5_1:-14407620 Msa0719330:CDS
AGAACTGGTAGAAAAGAGAA+AGG 0.567928 5_1:-14407692 Msa0719330:CDS
GGAACTTTAAATCAAAACAA+AGG 0.576138 5_1:+14408223 None:intergenic
CGTCATCAAACAAGTAAACT+GGG 0.577268 5_1:+14406188 None:intergenic
TGAGCAGATAGTAGCAAGCA+GGG 0.579633 5_1:-14404775 Msa0719330:CDS
TTGAAGCATGCTGATTTCCC+TGG 0.586959 5_1:-14404858 Msa0719330:CDS
CATGTAAGTTTCCTTCCACA+TGG 0.594474 5_1:+14406145 None:intergenic
ACACAGTCTTGAAAGTATCA+AGG 0.597310 5_1:-14406718 Msa0719330:CDS
TTTCATGGATACCATGTGGA+AGG 0.599237 5_1:-14406156 Msa0719330:CDS
GTGAGGTTGATCCAGAAAGA+GGG 0.602515 5_1:-14406226 Msa0719330:CDS
AGAAGATACTTGATAACATG+TGG 0.602583 5_1:-14407908 Msa0719330:CDS
AACACATAAAATATATGAGG+TGG 0.602665 5_1:+14408202 None:intergenic
GGTGGTTTAATAAGCTCAGG+AGG 0.603286 5_1:+14407548 None:intergenic
GCAGCAGAACCTCCAAAAGG+TGG 0.608673 5_1:-14407788 Msa0719330:CDS
GGTGCAGCAGAACCTCCAAA+AGG 0.611239 5_1:-14407791 Msa0719330:CDS
GTGTCAGTTGTGGAAATGGA+TGG 0.614489 5_1:-14404972 Msa0719330:CDS
CAGAGAGACATGGCGGAACG+TGG 0.615135 5_1:-14406741 Msa0719330:CDS
AGAGACTTACAAAGGAAATG+AGG 0.618923 5_1:-14406089 Msa0719330:intron
ACAAATATTTCAGAGAGACA+TGG 0.624789 5_1:-14406751 Msa0719330:intron
TCAAGGCTAGCATTGAAGCA+AGG 0.642202 5_1:-14406701 Msa0719330:CDS
CTACTTAGACATTAGCAATG+AGG 0.647945 5_1:-14406895 Msa0719330:CDS
TGTGCAATAGGTGTCAGTTG+TGG 0.648349 5_1:-14404982 Msa0719330:intron
AGCAGGGCTGAGACTCCAGT+AGG 0.659219 5_1:-14404759 Msa0719330:CDS
ACAATTTCATGGATACCATG+TGG 0.667312 5_1:-14406160 Msa0719330:CDS
TACATACATAATATTGGACA+AGG 0.682019 5_1:-14404701 Msa0719330:three_prime_UTR
TATGGACCAGAGACTTACAA+AGG 0.682242 5_1:-14406097 Msa0719330:CDS
AATATTTCAGAGAGACATGG+CGG 0.751503 5_1:-14406748 Msa0719330:intron
ATCATCCAAACATATCACAG+TGG 0.763501 5_1:+14407730 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATGTATGTATATATA+AGG + chr5_1:14408064-14408083 None:intergenic 10.0%
!! TATATATACATACATAATAT+TGG - chr5_1:14408064-14408083 Msa0719330:CDS 10.0%
!!! AAAAATAAGAAAATGATTTT+GGG + chr5_1:14408113-14408132 None:intergenic 10.0%
!!! TGAAACAGATATTTTTTAAA+TGG + chr5_1:14404505-14404524 None:intergenic 15.0%
!!! ATATATTCTAAGAAAAAGTT+TGG + chr5_1:14404595-14404614 None:intergenic 15.0%
!! CAATCATAAAAAAATAGATA+AGG + chr5_1:14405618-14405637 None:intergenic 15.0%
!! ATATTTGTCAAAAAATTGTT+AGG + chr5_1:14406008-14406027 None:intergenic 15.0%
!! TATAAATCTACAGTAAATAA+TGG - chr5_1:14406814-14406833 Msa0719330:intron 15.0%
!! TTCTATTAGTTATTATCTAA+AGG + chr5_1:14406942-14406961 None:intergenic 15.0%
!! TCAGTTTAAAAAACAATTAT+AGG - chr5_1:14407537-14407556 Msa0719330:CDS 15.0%
!! CAGTTTAAAAAACAATTATA+GGG - chr5_1:14407538-14407557 Msa0719330:CDS 15.0%
!! AGTTTAAAAAACAATTATAG+GGG - chr5_1:14407539-14407558 Msa0719330:CDS 15.0%
!!! TATTTGCTATAGTTTTATAA+AGG + chr5_1:14407704-14407723 None:intergenic 15.0%
!!! TTTTTAAATTTTTGTGCAAT+AGG - chr5_1:14407777-14407796 Msa0719330:CDS 15.0%
!!! CAAAAATAAGAAAATGATTT+TGG + chr5_1:14408114-14408133 None:intergenic 15.0%
!! ATGTTGTATTAATAATATAG+AGG - chr5_1:14408206-14408225 Msa0719330:five_prime_UTR 15.0%
!! AAAAAAAATATTCATATGCA+TGG + chr5_1:14408316-14408335 None:intergenic 15.0%
!!! GTAAACAACAATTTTGATTT+TGG + chr5_1:14404483-14404502 None:intergenic 20.0%
!! GAACTTTAAATCAAAACAAA+GGG + chr5_1:14404550-14404569 None:intergenic 20.0%
!!! TTGAATTTTATCTAGTAAGA+TGG + chr5_1:14405317-14405336 None:intergenic 20.0%
!! ATAAAATTCAAAATTAGCGA+CGG - chr5_1:14405326-14405345 Msa0719330:intron 20.0%
!!! ACATTAGACATTTTTATCTA+TGG + chr5_1:14405471-14405490 None:intergenic 20.0%
!!! TCTATTTTTTTATGATTGTG+TGG - chr5_1:14405620-14405639 Msa0719330:intron 20.0%
!!! ATTTTACTATAGAGTAACAA+TGG + chr5_1:14405715-14405734 None:intergenic 20.0%
!! AAAACTTATGCAATTCTATA+AGG - chr5_1:14405952-14405971 Msa0719330:intron 20.0%
!! TACTTGTACAAATTATTCAT+TGG - chr5_1:14406388-14406407 Msa0719330:intron 20.0%
!! ATTGAAATCAAATAGTTGAT+TGG + chr5_1:14406734-14406753 None:intergenic 20.0%
!! CTGTAGATTTATAATTAAAC+TGG + chr5_1:14406858-14406877 None:intergenic 20.0%
!! TAAATATGTCACATTGTTAA+AGG - chr5_1:14406887-14406906 Msa0719330:CDS 20.0%
!! AATAACACAATTACCAATTA+GGG - chr5_1:14407154-14407173 Msa0719330:intron 20.0%
!! AATGTAAAGTTACTTATGTT+TGG - chr5_1:14407258-14407277 Msa0719330:intron 20.0%
!! AGTTTCCTTCAAAAAAAAAA+TGG - chr5_1:14407300-14407319 Msa0719330:intron 20.0%
!! GTTTCCTTCAAAAAAAAAAT+GGG - chr5_1:14407301-14407320 Msa0719330:intron 20.0%
!!! ATTTCCCATTTTTTTTTTGA+AGG + chr5_1:14407308-14407327 None:intergenic 20.0%
!!! TCAAAAACAGTTTCTTTTTA+TGG - chr5_1:14407417-14407436 Msa0719330:intron 20.0%
!!! GACACAAAAGTTAAATATTT+TGG + chr5_1:14407745-14407764 None:intergenic 20.0%
! GGAACTTTAAATCAAAACAA+AGG + chr5_1:14404551-14404570 None:intergenic 25.0%
! AACACATAAAATATATGAGG+TGG + chr5_1:14404572-14404591 None:intergenic 25.0%
! TGGAACACATAAAATATATG+AGG + chr5_1:14404575-14404594 None:intergenic 25.0%
! ACAATAATATTCAGTGAGAA+TGG - chr5_1:14404691-14404710 Msa0719330:three_prime_UTR 25.0%
! ACAAGTTAAAGCTATTAAAG+AGG - chr5_1:14405150-14405169 Msa0719330:intron 25.0%
! CAAGTTAAAGCTATTAAAGA+GGG - chr5_1:14405151-14405170 Msa0719330:intron 25.0%
! CCAGTAACATGATTATAAAT+AGG + chr5_1:14405193-14405212 None:intergenic 25.0%
! CCTATTTATAATCATGTTAC+TGG - chr5_1:14405190-14405209 Msa0719330:intron 25.0%
! GCATAGATATTACTTACATT+GGG + chr5_1:14405276-14405295 None:intergenic 25.0%
! AGCATAGATATTACTTACAT+TGG + chr5_1:14405277-14405296 None:intergenic 25.0%
! TTCATCACTAATGATATTAG+AGG + chr5_1:14405381-14405400 None:intergenic 25.0%
! AAAATAGATAGTTCAATCCA+TGG - chr5_1:14405730-14405749 Msa0719330:intron 25.0%
!! CTAAAAAGATTTTATGTCCA+TGG + chr5_1:14405750-14405769 None:intergenic 25.0%
!!! GACATAAAATCTTTTTAGCT+TGG - chr5_1:14405752-14405771 Msa0719330:intron 25.0%
! AAATTAATAATCAAGGTGAG+TGG + chr5_1:14405795-14405814 None:intergenic 25.0%
! ACGTCTCAAATTAATAATCA+AGG + chr5_1:14405802-14405821 None:intergenic 25.0%
! AAAAAATTGTTAGGCCAAAA+TGG + chr5_1:14405999-14406018 None:intergenic 25.0%
!! TTTAAGATTTCCTTTCTTTC+AGG + chr5_1:14406143-14406162 None:intergenic 25.0%
! ACATCTTAGATCAAAATTGT+TGG + chr5_1:14406246-14406265 None:intergenic 25.0%
! AAAGTGAATTATCAAATCAG+CGG + chr5_1:14406368-14406387 None:intergenic 25.0%
!! ATTATCATCTGGAATTAGTT+GGG + chr5_1:14406507-14406526 None:intergenic 25.0%
! TAGTTGATTGGATATTTGAA+GGG + chr5_1:14406722-14406741 None:intergenic 25.0%
! ATAGTTGATTGGATATTTGA+AGG + chr5_1:14406723-14406742 None:intergenic 25.0%
! AAATCTACAGTAAATAATGG+TGG - chr5_1:14406817-14406836 Msa0719330:intron 25.0%
! TTTATTTACCGACATTACAT+TGG - chr5_1:14406975-14406994 Msa0719330:intron 25.0%
! TCGATGATTAATCTATGATA+GGG + chr5_1:14407106-14407125 None:intergenic 25.0%
! CAATAACACAATTACCAATT+AGG - chr5_1:14407153-14407172 Msa0719330:intron 25.0%
!! TTGAGAGAATATTTTGCTTT+AGG - chr5_1:14407200-14407219 Msa0719330:intron 25.0%
!! CTTTTTATGTTATGCTTAAC+CGG - chr5_1:14407449-14407468 Msa0719330:intron 25.0%
!! ATTAACTTGAAGCTTGATTA+TGG + chr5_1:14407573-14407592 None:intergenic 25.0%
! TATGTATGTATATATAAGGC+AGG + chr5_1:14408060-14408079 None:intergenic 25.0%
! TACATACATAATATTGGACA+AGG - chr5_1:14408070-14408089 Msa0719330:exon 25.0%
! AACATACAATACATGAAATG+TGG + chr5_1:14408143-14408162 None:intergenic 25.0%
AGTTGGATAGAGGATTATTT+GGG + chr5_1:14404620-14404639 None:intergenic 30.0%
AAGTTGGATAGAGGATTATT+TGG + chr5_1:14404621-14404640 None:intergenic 30.0%
AAGAAGAAGTGAGTTTAAGT+TGG + chr5_1:14404637-14404656 None:intergenic 30.0%
ATTGAGATGTTTGTTCTTAG+AGG + chr5_1:14404743-14404762 None:intergenic 30.0%
!!! ACATGTGTTTTTGATGATGT+TGG + chr5_1:14404767-14404786 None:intergenic 30.0%
ACATCATCAAAAACACATGT+TGG - chr5_1:14404767-14404786 Msa0719330:CDS 30.0%
!! TGTTGGTTTGAATCAAAAAC+AGG - chr5_1:14404784-14404803 Msa0719330:CDS 30.0%
! AGAAGATACTTGATAACATG+TGG - chr5_1:14404863-14404882 Msa0719330:CDS 30.0%
TTTGGATGATTACCATTCTT+TGG - chr5_1:14405054-14405073 Msa0719330:intron 30.0%
! AGATCAAAATCATTAGCTCT+TGG + chr5_1:14405121-14405140 None:intergenic 30.0%
!!! TAATCATGTTACTGGTCTTT+TGG - chr5_1:14405198-14405217 Msa0719330:intron 30.0%
TATTAAACCACCCAAAATCT+TGG - chr5_1:14405234-14405253 Msa0719330:intron 30.0%
AATCTTGAGAATCAAGATGT+GGG - chr5_1:14405547-14405566 Msa0719330:intron 30.0%
! TTTTTATGATTGTGTGGACA+AGG - chr5_1:14405626-14405645 Msa0719330:intron 30.0%
TCAATCTTCCTTAATGTATG+TGG - chr5_1:14405666-14405685 Msa0719330:intron 30.0%
! GAAATTTGCTTGGAAAATTC+AGG - chr5_1:14405900-14405919 Msa0719330:intron 30.0%
CTTATGCAATTCTATAAGGT+TGG - chr5_1:14405956-14405975 Msa0719330:intron 30.0%
! TTTATGCTTCTCATCCATTT+TGG - chr5_1:14405982-14406001 Msa0719330:intron 30.0%
ACAAATATTTCAGAGAGACA+TGG - chr5_1:14406020-14406039 Msa0719330:intron 30.0%
CCAATATAAGCTTCAAAATC+AGG + chr5_1:14406099-14406118 None:intergenic 30.0%
!!! CCTGATTTTGAAGCTTATAT+TGG - chr5_1:14406096-14406115 Msa0719330:CDS 30.0%
TCTTAGATCAAAATTGTTGG+TGG + chr5_1:14406243-14406262 None:intergenic 30.0%
! CATTATCATCTGGAATTAGT+TGG + chr5_1:14406508-14406527 None:intergenic 30.0%
! CTAATTCCAGATGATAATGA+AGG - chr5_1:14406509-14406528 Msa0719330:intron 30.0%
ATCTTTCCTTCATTATCATC+TGG + chr5_1:14406518-14406537 None:intergenic 30.0%
AAGGAAAGATATTAAGAGTG+AGG - chr5_1:14406528-14406547 Msa0719330:intron 30.0%
! AACAAACTAGCTTGAATTTG+TGG + chr5_1:14406769-14406788 None:intergenic 30.0%
GAATCTCTTAAGCAATATCT+TGG - chr5_1:14407017-14407036 Msa0719330:intron 30.0%
TTAATCTATGATAGGGAACA+TGG + chr5_1:14407099-14407118 None:intergenic 30.0%
GTCGATGATTAATCTATGAT+AGG + chr5_1:14407107-14407126 None:intergenic 30.0%
AGATTAATCATCGACAAAGT+CGG - chr5_1:14407112-14407131 Msa0719330:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG - chr5_1:14407349-14407368 Msa0719330:intron 30.0%
CGGTTAAGCATAACATAAAA+AGG + chr5_1:14407451-14407470 None:intergenic 30.0%
AAGGAACAAAAACACAAGTT+TGG + chr5_1:14407685-14407704 None:intergenic 30.0%
TCTTATCTTCAAACCAACTA+TGG + chr5_1:14407968-14407987 None:intergenic 30.0%
!!! TGATTTTGGGATAGAATTCA+AGG + chr5_1:14408100-14408119 None:intergenic 30.0%
TAATATAGAGGAGAAAAAGC+AGG - chr5_1:14408218-14408237 Msa0719330:five_prime_UTR 30.0%
TTTGAACAATTTGTCATCAC+TGG - chr5_1:14408271-14408290 Msa0719330:five_prime_UTR 30.0%
! ATATTCATATGCATGGACTA+TGG + chr5_1:14408309-14408328 None:intergenic 30.0%
!! AGTGAGTTTAAGTTGGATAG+AGG + chr5_1:14404630-14404649 None:intergenic 35.0%
TTGTTCTCTCTTTCTCTCTA+AGG + chr5_1:14404675-14404694 None:intergenic 35.0%
! TCTTCTGTTGTTGCTCTTTT+TGG + chr5_1:14404828-14404847 None:intergenic 35.0%
! AGAAGACTCACAAGTGTTTT+TGG - chr5_1:14404956-14404975 Msa0719330:CDS 35.0%
TGATAAGTGTGTTTGAGTCA+GGG + chr5_1:14405012-14405031 None:intergenic 35.0%
ATCATCCAAACATATCACAG+TGG + chr5_1:14405044-14405063 None:intergenic 35.0%
TACCATTCTTTGGATAGAAC+TGG - chr5_1:14405064-14405083 Msa0719330:intron 35.0%
TACCAGTTCTATCCAAAGAA+TGG + chr5_1:14405069-14405088 None:intergenic 35.0%
AGAACTGGTAGAAAAGAGAA+AGG - chr5_1:14405079-14405098 Msa0719330:intron 35.0%
! CCTTCAATGACCAAGATTTT+GGG + chr5_1:14405247-14405266 None:intergenic 35.0%
! ACCTTCAATGACCAAGATTT+TGG + chr5_1:14405248-14405267 None:intergenic 35.0%
GAATCTTGAGAATCAAGATG+TGG - chr5_1:14405546-14405565 Msa0719330:intron 35.0%
ATCTTGAGAATCAAGATGTG+GGG - chr5_1:14405548-14405567 Msa0719330:intron 35.0%
TTGTTGGTCCACATACATTA+AGG + chr5_1:14405677-14405696 None:intergenic 35.0%
CTACTTAGACATTAGCAATG+AGG - chr5_1:14405876-14405895 Msa0719330:intron 35.0%
AATATTTCAGAGAGACATGG+CGG - chr5_1:14406023-14406042 Msa0719330:intron 35.0%
!! ACACAGTCTTGAAAGTATCA+AGG - chr5_1:14406053-14406072 Msa0719330:intron 35.0%
ATTTCCTTTCTTTCAGGAGT+TGG + chr5_1:14406137-14406156 None:intergenic 35.0%
TCGTCTTTAGCAATTTACGA+CGG - chr5_1:14406183-14406202 Msa0719330:CDS 35.0%
AATCGTTTGCGTCTATGTAT+CGG - chr5_1:14406313-14406332 Msa0719330:CDS 35.0%
AGTATTTAACACCCTCTTTC+TGG + chr5_1:14406559-14406578 None:intergenic 35.0%
CGTCATCAAACAAGTAAACT+GGG + chr5_1:14406586-14406605 None:intergenic 35.0%
CCAGTTTACTTGTTTGATGA+CGG - chr5_1:14406584-14406603 Msa0719330:intron 35.0%
ATGACGGTTCTACAATTTCA+TGG - chr5_1:14406600-14406619 Msa0719330:intron 35.0%
ACAATTTCATGGATACCATG+TGG - chr5_1:14406611-14406630 Msa0719330:intron 35.0%
AAACTTACATGCTCTTATCC+TGG - chr5_1:14406638-14406657 Msa0719330:intron 35.0%
CCATAGGAAAATTTAATGCC+AGG + chr5_1:14406659-14406678 None:intergenic 35.0%
! CCTGGCATTAAATTTTCCTA+TGG - chr5_1:14406656-14406675 Msa0719330:intron 35.0%
TCATTTCCTTTGTAAGTCTC+TGG + chr5_1:14406683-14406702 None:intergenic 35.0%
AGAGACTTACAAAGGAAATG+AGG - chr5_1:14406682-14406701 Msa0719330:CDS 35.0%
CTAAAGGAAATAGCTCAACT+TGG + chr5_1:14406926-14406945 None:intergenic 35.0%
!! TTGGATTTTAGCCATGTAGA+TGG - chr5_1:14407036-14407055 Msa0719330:intron 35.0%
!! TGGATTTTAGCCATGTAGAT+GGG - chr5_1:14407037-14407056 Msa0719330:intron 35.0%
! CCATATTTTTCCCATCTACA+TGG + chr5_1:14407050-14407069 None:intergenic 35.0%
CCATGTAGATGGGAAAAATA+TGG - chr5_1:14407047-14407066 Msa0719330:intron 35.0%
AACCTCTCTTCCAAATTCTA+TGG - chr5_1:14407871-14407890 Msa0719330:CDS 35.0%
AGTGACTTCTCCATAGAATT+TGG + chr5_1:14407884-14407903 None:intergenic 35.0%
TCTTCAAACCAACTATGGTT+TGG + chr5_1:14407963-14407982 None:intergenic 35.0%
!!! TTTTGGTTCTTAACTGTGCG+AGG + chr5_1:14404466-14404485 None:intergenic 40.0%
CAAAACAAAGGGAGTTTAGC+AGG + chr5_1:14404539-14404558 None:intergenic 40.0%
! TACTTGATAACATGTGGAGC+AGG - chr5_1:14404869-14404888 Msa0719330:CDS 40.0%
GACTCACAGACAATTGTGAT+TGG - chr5_1:14404893-14404912 Msa0719330:CDS 40.0%
!!! AGACTCACAAGTGTTTTTGG+AGG - chr5_1:14404959-14404978 Msa0719330:CDS 40.0%
CTGATAAGTGTGTTTGAGTC+AGG + chr5_1:14405013-14405032 None:intergenic 40.0%
CACAACCACTGTGATATGTT+TGG - chr5_1:14405036-14405055 Msa0719330:intron 40.0%
TTGGGTGGTTTAATAAGCTC+AGG + chr5_1:14405229-14405248 None:intergenic 40.0%
! TCAATGACCAAGATTTTGGG+TGG + chr5_1:14405244-14405263 None:intergenic 40.0%
CCCAAAATCTTGGTCATTGA+AGG - chr5_1:14405244-14405263 Msa0719330:intron 40.0%
TAGCGACGGAAATTTAGAGA+CGG - chr5_1:14405340-14405359 Msa0719330:intron 40.0%
GAGAATCATACCTACATGCA+TGG + chr5_1:14405828-14405847 None:intergenic 40.0%
! TTCTCGAGTCAGAGATCTTT+TGG - chr5_1:14405843-14405862 Msa0719330:intron 40.0%
! GCAATGAGGTGAAATTTGCT+TGG - chr5_1:14405890-14405909 Msa0719330:intron 40.0%
GATTCCAACTCCTGAAAGAA+AGG - chr5_1:14406130-14406149 Msa0719330:CDS 40.0%
!! GCATCTGCATATTGCTTTTG+TGG + chr5_1:14406464-14406483 None:intergenic 40.0%
! TCATCTGGAATTAGTTGGGT+TGG + chr5_1:14406503-14406522 None:intergenic 40.0%
CCGTCATCAAACAAGTAAAC+TGG + chr5_1:14406587-14406606 None:intergenic 40.0%
TTTCATGGATACCATGTGGA+AGG - chr5_1:14406615-14406634 Msa0719330:intron 40.0%
CATGTAAGTTTCCTTCCACA+TGG + chr5_1:14406629-14406648 None:intergenic 40.0%
TTTGTAAGTCTCTGGTCCAT+AGG + chr5_1:14406675-14406694 None:intergenic 40.0%
TATGGACCAGAGACTTACAA+AGG - chr5_1:14406674-14406693 Msa0719330:intron 40.0%
CACTAGGACCAATGTAATGT+CGG + chr5_1:14406986-14407005 None:intergenic 40.0%
! GATTCGAGTTCAATTCCACT+AGG + chr5_1:14407002-14407021 None:intergenic 40.0%
TCTATGATAGGGAACATGGT+TGG + chr5_1:14407095-14407114 None:intergenic 40.0%
TAATCATCGACAAAGTCGGT+TGG - chr5_1:14407116-14407135 Msa0719330:intron 40.0%
!!! TTTTTTTGGGTCCTGCTAAC+CGG + chr5_1:14407488-14407507 None:intergenic 40.0%
! AGCAAATTCAATTCGACTCG+AGG - chr5_1:14407602-14407621 Msa0719330:CDS 40.0%
ATAGGTGTCAGTTGTGGAAA+TGG - chr5_1:14407795-14407814 Msa0719330:CDS 40.0%
CTCCATAGAATTTGGAAGAG+AGG + chr5_1:14407876-14407895 None:intergenic 40.0%
! ATTGGTCTAGCAGCTGATTC+AGG - chr5_1:14404911-14404930 Msa0719330:CDS 45.0%
GGTGGTTTAATAAGCTCAGG+AGG + chr5_1:14405226-14405245 None:intergenic 45.0%
! GAGACGTTTTCCATGCATGT+AGG - chr5_1:14405815-14405834 Msa0719330:intron 45.0%
! TCAAGGCTAGCATTGAAGCA+AGG - chr5_1:14406070-14406089 Msa0719330:intron 45.0%
! AGTGAGGTTGATCCAGAAAG+AGG - chr5_1:14406544-14406563 Msa0719330:intron 45.0%
! GTGAGGTTGATCCAGAAAGA+GGG - chr5_1:14406545-14406564 Msa0719330:intron 45.0%
CGACATTACATTGGTCCTAG+TGG - chr5_1:14406984-14407003 Msa0719330:intron 45.0%
GTTGAAGACTCCACCAAACT+TGG - chr5_1:14407069-14407088 Msa0719330:intron 45.0%
GAGCTTGAAGTAGCCCTAAT+TGG + chr5_1:14407170-14407189 None:intergenic 45.0%
TGTGCAATAGGTGTCAGTTG+TGG - chr5_1:14407789-14407808 Msa0719330:CDS 45.0%
GTGTCAGTTGTGGAAATGGA+TGG - chr5_1:14407799-14407818 Msa0719330:CDS 45.0%
TGGAAGAGAGGTTGCTTAAG+TGG + chr5_1:14407864-14407883 None:intergenic 45.0%
!! TTGAAGCATGCTGATTTCCC+TGG - chr5_1:14407913-14407932 Msa0719330:CDS 45.0%
GATTTCCCTGGTAGCAACAA+TGG - chr5_1:14407925-14407944 Msa0719330:CDS 45.0%
CTGTTCCATTGTTGCTACCA+GGG + chr5_1:14407933-14407952 None:intergenic 45.0%
GGTCTCTTCCAAACCATAGT+TGG - chr5_1:14407952-14407971 Msa0719330:CDS 45.0%
TTGAGCAGATAGTAGCAAGC+AGG - chr5_1:14407995-14408014 Msa0719330:CDS 45.0%
TGAGCAGATAGTAGCAAGCA+GGG - chr5_1:14407996-14408015 Msa0719330:CDS 45.0%
! TAAGCTTTAGCTGCTCCTAC+TGG + chr5_1:14408030-14408049 None:intergenic 45.0%
AGTAGGAGCAGCTAAAGCTT+AGG - chr5_1:14408029-14408048 Msa0719330:CDS 45.0%
!!! CTTTTATATTAATTTTTTTT+GGG + chr5_1:14407501-14407520 None:intergenic 5.0%
!!! ACTTTTATATTAATTTTTTT+TGG + chr5_1:14407502-14407521 None:intergenic 5.0%
! CTAGCAGCTGATTCAGGATG+TGG - chr5_1:14404917-14404936 Msa0719330:CDS 50.0%
! TCAGGGTTTCCACCTTTTGG+AGG + chr5_1:14404995-14405014 None:intergenic 50.0%
! GAGTCAGGGTTTCCACCTTT+TGG + chr5_1:14404998-14405017 None:intergenic 50.0%
GACCAACAACATGCACACGT+GGG - chr5_1:14405688-14405707 Msa0719330:intron 50.0%
!! GGAAGCATCGTTGCAGATAC+TGG + chr5_1:14406347-14406366 None:intergenic 50.0%
! ACATGGTTGGCCAAGTTTGG+TGG + chr5_1:14407082-14407101 None:intergenic 50.0%
! GGAACATGGTTGGCCAAGTT+TGG + chr5_1:14407085-14407104 None:intergenic 50.0%
CATCGACAAAGTCGGTTGGT+AGG - chr5_1:14407120-14407139 Msa0719330:intron 50.0%
CATATCCTTAACCAGTGCCC+CGG + chr5_1:14407345-14407364 None:intergenic 50.0%
CCTGTTCCATTGTTGCTACC+AGG + chr5_1:14407934-14407953 None:intergenic 50.0%
CCTGGTAGCAACAATGGAAC+AGG - chr5_1:14407931-14407950 Msa0719330:CDS 50.0%
GGTGCAGCAGAACCTCCAAA+AGG - chr5_1:14404980-14404999 Msa0719330:intron 55.0%
GCAGCAGAACCTCCAAAAGG+TGG - chr5_1:14404983-14405002 Msa0719330:intron 55.0%
GGACCAACAACATGCACACG+TGG - chr5_1:14405687-14405706 Msa0719330:intron 55.0%
GACCCACGTGTGCATGTTGT+TGG + chr5_1:14405693-14405712 None:intergenic 55.0%
GATGTGTCTCACGACGCATG+TGG - chr5_1:14406261-14406280 Msa0719330:CDS 55.0%
GAAATGCTAACCGCTGCCTC+CGG - chr5_1:14407323-14407342 Msa0719330:intron 55.0%
AAATGCTAACCGCTGCCTCC+GGG - chr5_1:14407324-14407343 Msa0719330:intron 55.0%
GTTATGCTTAACCGGTGCCC+CGG - chr5_1:14407457-14407476 Msa0719330:intron 55.0%
TTATGCTTAACCGGTGCCCC+GGG - chr5_1:14407458-14407477 Msa0719330:intron 55.0%
! CAGAGAGACATGGCGGAACG+TGG - chr5_1:14406030-14406049 Msa0719330:intron 60.0%
AATGCTAACCGCTGCCTCCG+GGG - chr5_1:14407325-14407344 Msa0719330:intron 60.0%
ATCCTTAACCAGTGCCCCGG+AGG + chr5_1:14407342-14407361 None:intergenic 60.0%
TATGCTTAACCGGTGCCCCG+GGG - chr5_1:14407459-14407478 Msa0719330:intron 60.0%
AGCAGGGCTGAGACTCCAGT+AGG - chr5_1:14408012-14408031 Msa0719330:CDS 60.0%
!! TGCCTCCGGGGCACTGGTTA+AGG - chr5_1:14407337-14407356 Msa0719330:intron 65.0%
TCCTGCTAACCGGTGTCCCC+GGG + chr5_1:14407478-14407497 None:intergenic 65.0%
GTCCTGCTAACCGGTGTCCC+CGG + chr5_1:14407479-14407498 None:intergenic 65.0%
AACCAGTGCCCCGGAGGCAG+CGG + chr5_1:14407336-14407355 None:intergenic 70.0%
CCTGCTAACCGGTGTCCCCG+GGG + chr5_1:14407477-14407496 None:intergenic 70.0%
AACCGCTGCCTCCGGGGCAC+TGG - chr5_1:14407331-14407350 Msa0719330:intron 75.0%
AACCGGTGCCCCGGGGACAC+CGG - chr5_1:14407466-14407485 Msa0719330:intron 75.0%
AACCGGTGTCCCCGGGGCAC+CGG + chr5_1:14407471-14407490 None:intergenic 75.0%
! CCCCGGGGACACCGGTTAGC+AGG - chr5_1:14407474-14407493 Msa0719330:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 14404449 14408344 14404449 ID=Msa0719330;Name=Msa0719330
chr5_1 mRNA 14404449 14408344 14404449 ID=Msa0719330-mRNA-1;Parent=Msa0719330;Name=Msa0719330-mRNA-1;_AED=0.17;_eAED=0.17;_QI=261|1|1|1|1|1|5|294|411
chr5_1 exon 14404449 14404994 14404449 ID=Msa0719330-mRNA-1:exon:5674;Parent=Msa0719330-mRNA-1
chr5_1 exon 14406090 14406334 14406090 ID=Msa0719330-mRNA-1:exon:5673;Parent=Msa0719330-mRNA-1
chr5_1 exon 14406676 14406760 14406676 ID=Msa0719330-mRNA-1:exon:5672;Parent=Msa0719330-mRNA-1
chr5_1 exon 14406872 14406956 14406872 ID=Msa0719330-mRNA-1:exon:5671;Parent=Msa0719330-mRNA-1
chr5_1 exon 14407515 14408344 14407515 ID=Msa0719330-mRNA-1:exon:5670;Parent=Msa0719330-mRNA-1
chr5_1 five_prime_UTR 14408084 14408344 14408084 ID=Msa0719330-mRNA-1:five_prime_utr;Parent=Msa0719330-mRNA-1
chr5_1 CDS 14407515 14408083 14407515 ID=Msa0719330-mRNA-1:cds;Parent=Msa0719330-mRNA-1
chr5_1 CDS 14406872 14406956 14406872 ID=Msa0719330-mRNA-1:cds;Parent=Msa0719330-mRNA-1
chr5_1 CDS 14406676 14406760 14406676 ID=Msa0719330-mRNA-1:cds;Parent=Msa0719330-mRNA-1
chr5_1 CDS 14406090 14406334 14406090 ID=Msa0719330-mRNA-1:cds;Parent=Msa0719330-mRNA-1
chr5_1 CDS 14404743 14404994 14404743 ID=Msa0719330-mRNA-1:cds;Parent=Msa0719330-mRNA-1
chr5_1 three_prime_UTR 14404449 14404742 14404449 ID=Msa0719330-mRNA-1:three_prime_utr;Parent=Msa0719330-mRNA-1
Gene Sequence

>Msa0719330

ATGGCAGCATGTACTGTCTACTCAACACAACCTCTAAGAACAAACATCTCAATTCCAACATCATCAAAAACACATGTTGGTTTGAATCAAAAACAGGTAGTGTTCTACACAACAACCAAAAAGAGCAACAACAGAAGAACTAACAGTAACAACAGAAGATACTTGATAACATGTGGAGCAGGTGACTCACAGACAATTGTGATTGGTCTAGCAGCTGATTCAGGATGTGGAAAAAGTACTTTCATGAGAAGACTCACAAGTGTTTTTGGAGGTGCAGCAGAACCTCCAAAAGGTGGAAACCCTGACTCAAACACACTTATCAGTGACACAACCACTGTGATATGTTTGGATGATTACCATTCTTTGGATAGAACTGGTAGAAAAGAGAAAGGTGTTACTGCACTTGATCCAAGAGCTAATGATTTTGATCTTATGTATGAACAAGTTAAAGCTATTAAAGAGGGTATTTCTGTTCAAAAACCTATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCACCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGATTCTCGAGTCAGAGATCTTTTGGACTTCAGTATCTACTTAGACATTAGCAATGAGGTGAAATTTGCTTGGAAAATTCAGAGAGACATGGCGGAACGTGGACACAGTCTTGAAAGTATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGAAGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTAATTCCAGATGATAATGAAGGAAAGATATTAAGAGTGAGGTTGATCCAGAAAGAGGGTGTTAAATACTTTAGCCCAGTTTACTTGTTTGATGACGGTTCTACAATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTATCCTGGCATTAAATTTTCCTATGGACCAGAGACTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATATGTTGAGAGCCACTTAAGCAACCTCTCTTCCAAATTCTATGGAGAAGTCACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGACTCCAGTAGGAGCAGCTAAAGCTTAG

Protein sequence

>Msa0719330

MAACTVYSTQPLRTNISIPTSSKTHVGLNQKQVVFYTTTKKSNNRRTNSNNRRYLITCGAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFSYGPETYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA*