AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063260 MtrunA17_Chr7g0242431 86.429 280 38 0 1 280 1 280 0.0 510
Msa1063260 MtrunA17_Chr7g0242401 85.393 267 39 0 14 280 15 281 3.00e-174 482
Msa1063260 MtrunA17_Chr7g0242411 85.944 249 30 2 32 280 2 245 3.62e-159 442
Msa1063260 MtrunA17_Chr4g0006731 67.331 251 80 2 31 279 5 255 9.22e-125 356
Msa1063260 MtrunA17_Chr7g0242451 67.600 250 78 3 31 279 5 252 9.39e-123 350
Msa1063260 MtrunA17_Chr7g0242391 66.008 253 81 3 32 279 2 254 1.53e-120 345
Msa1063260 MtrunA17_Chr3g0113401 58.498 253 103 2 29 279 3 255 3.46e-110 319
Msa1063260 MtrunA17_Chr7g0242461 62.343 239 88 2 32 269 6 243 2.87e-107 311
Msa1063260 MtrunA17_Chr7g0242441 62.753 247 30 2 30 276 1 185 2.14e-102 296
Msa1063260 MtrunA17_Chr2g0283421 35.545 211 128 4 31 233 4 214 1.55e-42 146
Msa1063260 MtrunA17_Chr2g0283411 34.906 212 128 4 32 233 4 215 2.59e-42 145
Msa1063260 MtrunA17_Chr4g0059001 31.100 209 133 4 54 256 54 257 2.46e-28 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063260 AT3G11210.1 58.566 251 102 2 31 279 5 255 7.12e-111 321
Msa1063260 AT2G38180.1 60.262 229 81 4 32 257 6 227 6.20e-99 293
Msa1063260 AT5G45920.1 38.863 211 122 4 30 233 1 211 6.90e-47 157
Msa1063260 AT5G45920.4 38.863 211 122 4 30 233 1 211 6.90e-47 157
Msa1063260 AT5G62930.1 34.483 232 141 4 32 256 2 229 1.48e-45 154
Msa1063260 AT5G62930.2 34.177 237 145 4 27 256 23 255 1.76e-45 154
Msa1063260 AT5G45920.2 39.037 187 107 4 30 209 1 187 5.10e-40 138
Msa1063260 AT5G45920.3 39.037 187 107 4 30 209 1 187 5.10e-40 138
Msa1063260 AT5G62930.3 29.944 177 109 5 94 264 7 174 1.50e-24 97.8

Find 68 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGGATTCTATGAATT+TGG 0.135830 7_2:+54913163 None:intergenic
AAGTTAATGCCAGCTGAATT+TGG 0.274855 7_2:-54913289 Msa1063260:CDS
AATGAGCTCAGTGATGAATT+TGG 0.285385 7_2:-54913640 Msa1063260:intron
AAGGCGTGCTGTGCAAGTTT+TGG 0.302736 7_2:-54914520 Msa1063260:CDS
TATGATATGGTTTCTCTTGA+TGG 0.317939 7_2:-54913253 Msa1063260:CDS
AGAAGATTCACCTTATGATA+TGG 0.335446 7_2:-54913266 Msa1063260:CDS
CGATCAACGAGGCACAAATT+AGG 0.337436 7_2:-54913763 Msa1063260:CDS
CTATTTCAACTCAGAAGTTA+TGG 0.346406 7_2:-54914965 Msa1063260:exon
AATATATTCAGAAGCGTGTT+TGG 0.360952 7_2:-54913587 Msa1063260:CDS
TGGTCCTCATGTACCATTGC+AGG 0.370383 7_2:-54914173 Msa1063260:CDS
AGGCCTAAAATTGTGTTGTT+TGG 0.380075 7_2:-54914782 Msa1063260:CDS
GTTCAATACAGTTGCTATGA+AGG 0.383262 7_2:-54914749 Msa1063260:CDS
GAAGATTGCTACTTATATAA+TGG 0.403964 7_2:-54914131 Msa1063260:intron
ATACAGTTGCTATGAAGGTT+GGG 0.406406 7_2:-54914744 Msa1063260:CDS
AGTGGGAACCAAGTCTATAT+TGG 0.407643 7_2:-54913312 Msa1063260:CDS
GGACCAAGGCCACTTGGATA+TGG 0.410264 7_2:+54914190 None:intergenic
CGTCCATATCCAAGTGGCCT+TGG 0.417610 7_2:-54914193 Msa1063260:CDS
TAATAAAATCAATTTACATA+AGG 0.419747 7_2:+54913148 None:intergenic
TATTTCAACTCAGAAGTTAT+GGG 0.420297 7_2:-54914964 Msa1063260:exon
CACTCTACATCTTGAGGAAA+AGG 0.437938 7_2:+54913202 None:intergenic
TGCCATTGAGCAACCATCAT+TGG 0.437939 7_2:-54914248 Msa1063260:CDS
GTGTCGTGAGATGAAAATAA+AGG 0.443191 7_2:-54913560 Msa1063260:CDS
ATGAGCTCAGTGATGAATTT+GGG 0.445759 7_2:-54913639 Msa1063260:intron
TTCTCACTTGTATGCTCGTA+AGG 0.448936 7_2:-54914711 Msa1063260:intron
AATACAGTTGCTATGAAGGT+TGG 0.465220 7_2:-54914745 Msa1063260:CDS
ACCTTTCAATCCTCTCTCTC+TGG 0.465769 7_2:-54914928 Msa1063260:intron
CTAATTTGTGCCTCGTTGAT+CGG 0.468483 7_2:+54913764 None:intergenic
CTTGCATGTTCAATAATACA+TGG 0.469501 7_2:-54913082 Msa1063260:three_prime_UTR
AAGGTTGGGGAGCAATTAAG+AGG 0.474474 7_2:-54914838 Msa1063260:CDS
TCAAGAGAAACCATATCATA+AGG 0.483799 7_2:+54913256 None:intergenic
ATGATATGGTTTCTCTTGAT+GGG 0.487292 7_2:-54913252 Msa1063260:CDS
CAATTCAGAAGAGAGATGAT+TGG 0.494653 7_2:-54913519 Msa1063260:CDS
GATATGCTGCTTGGAATTCA+AGG 0.495898 7_2:-54914539 Msa1063260:CDS
CACCAATGATGGTTGCTCAA+TGG 0.505270 7_2:+54914246 None:intergenic
GGGTTCTTCCATTGCACAGT+GGG 0.510655 7_2:-54914817 Msa1063260:CDS
TTGGTGATTGTGTACTTTGG+TGG 0.528440 7_2:-54914229 Msa1063260:CDS
AAGTACACAATCACCAATGA+TGG 0.528971 7_2:+54914235 None:intergenic
GAATCTTCTCCAAATTCAGC+TGG 0.530268 7_2:+54913280 None:intergenic
AGGAATACATAGAAAATATG+AGG 0.533134 7_2:-54914153 Msa1063260:CDS
ACATGAGGACCAAGGCCACT+TGG 0.533170 7_2:+54914184 None:intergenic
GTTCTTCCATTGCACAGTGG+GGG 0.534821 7_2:-54914815 Msa1063260:CDS
ACCAGAGAGAGAGGATTGAA+AGG 0.536372 7_2:+54914927 None:intergenic
TAATCCGAGTCTTATGTGAC+AGG 0.539331 7_2:+54913804 None:intergenic
GAATTTGGAATAATATATCA+AGG 0.546411 7_2:+54913178 None:intergenic
TCATTGGTGATTGTGTACTT+TGG 0.556007 7_2:-54914232 Msa1063260:CDS
TACAGTTGCTATGAAGGTTG+GGG 0.558888 7_2:-54914743 Msa1063260:CDS
GAGAAAGTTACCAGAGAGAG+AGG 0.562172 7_2:+54914918 None:intergenic
CAAGGCCACTCTACATCTTG+AGG 0.564026 7_2:+54913196 None:intergenic
AATTGCAGACCACATATCAA+TGG 0.566695 7_2:+54913537 None:intergenic
ATTAACTTCCAATATAGACT+TGG 0.567442 7_2:+54913304 None:intergenic
TGTCATAAAAGAAGCAGAGT+GGG 0.567830 7_2:-54913329 Msa1063260:CDS
AAATAAAGGCCATTGATATG+TGG 0.571676 7_2:-54913546 Msa1063260:CDS
GGAGTTCATCTATCAACTGA+GGG 0.572805 7_2:-54913382 Msa1063260:CDS
ATTTGTGCCTCGTTGATCGG+AGG 0.599779 7_2:+54913767 None:intergenic
ATCTTGAGGAAAAGGCACAT+TGG 0.602253 7_2:+54913210 None:intergenic
TATTCCTGCAATGGTACATG+AGG 0.621940 7_2:+54914169 None:intergenic
GGGGAGTGAAATATTAACAA+AGG 0.628715 7_2:-54913362 Msa1063260:CDS
TTGCATGTTCAATAATACAT+GGG 0.642172 7_2:-54913081 Msa1063260:three_prime_UTR
GGTTCTTCCATTGCACAGTG+GGG 0.662401 7_2:-54914816 Msa1063260:CDS
AGAGCCTGTCACATAAGACT+CGG 0.665508 7_2:-54913808 Msa1063260:CDS
ATGTCATAAAAGAAGCAGAG+TGG 0.667998 7_2:-54913330 Msa1063260:CDS
TGGAGTTCATCTATCAACTG+AGG 0.669042 7_2:-54913383 Msa1063260:CDS
AGGGTTCTTCCATTGCACAG+TGG 0.691611 7_2:-54914818 Msa1063260:CDS
TGTATTCGTCCATATCCAAG+TGG 0.698167 7_2:-54914199 Msa1063260:CDS
AGGTTGGGGAGCAATTAAGA+GGG 0.698292 7_2:-54914837 Msa1063260:CDS
GAGTTCATCTATCAACTGAG+GGG 0.728386 7_2:-54913381 Msa1063260:CDS
CAGTAGTCCTCCGATCAACG+AGG 0.731081 7_2:-54913774 Msa1063260:CDS
GCAATGGTACATGAGGACCA+AGG 0.776215 7_2:+54914176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTAATTATTGATAATAAA+TGG + chr7_2:54914214-54914233 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_2:54914654-54914673 None:intergenic 10.0%
!! TAATAAAATCAATTTACATA+AGG + chr7_2:54914960-54914979 None:intergenic 10.0%
!!! AAGTAATTATTGATAATAAA+TGG + chr7_2:54914214-54914233 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_2:54914654-54914673 None:intergenic 10.0%
!! TAATAAAATCAATTTACATA+AGG + chr7_2:54914960-54914979 None:intergenic 10.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_2:54913241-54913260 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_2:54913242-54913261 Msa1063260:CDS 15.0%
!! AAATAAAAATAATCACATCA+TGG + chr7_2:54913783-54913802 None:intergenic 15.0%
!!! GTTATTTTGATTTCAAATTT+CGG - chr7_2:54914009-54914028 Msa1063260:intron 15.0%
!!! AAAGATTATACATTTGTTAA+GGG + chr7_2:54914391-54914410 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_2:54914427-54914446 None:intergenic 15.0%
!! TCAATAATAATTTAATTACG+TGG - chr7_2:54914680-54914699 Msa1063260:intron 15.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_2:54913241-54913260 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_2:54913242-54913261 Msa1063260:CDS 15.0%
!! AAATAAAAATAATCACATCA+TGG + chr7_2:54913783-54913802 None:intergenic 15.0%
!!! GTTATTTTGATTTCAAATTT+CGG - chr7_2:54914009-54914028 Msa1063260:intron 15.0%
!!! AAAGATTATACATTTGTTAA+GGG + chr7_2:54914391-54914410 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_2:54914427-54914446 None:intergenic 15.0%
!! TCAATAATAATTTAATTACG+TGG - chr7_2:54914680-54914699 Msa1063260:intron 15.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_2:54913434-54913453 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_2:54913441-54913460 Msa1063260:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_2:54913603-54913622 Msa1063260:CDS 20.0%
!! AGTATGAAACTTAATAATTC+AGG + chr7_2:54914116-54914135 None:intergenic 20.0%
!!! CAAAGATTATACATTTGTTA+AGG + chr7_2:54914392-54914411 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_2:54914930-54914949 None:intergenic 20.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_2:54913434-54913453 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_2:54913441-54913460 Msa1063260:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_2:54913603-54913622 Msa1063260:CDS 20.0%
!! AGTATGAAACTTAATAATTC+AGG + chr7_2:54914116-54914135 None:intergenic 20.0%
!!! CAAAGATTATACATTTGTTA+AGG + chr7_2:54914392-54914411 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_2:54914930-54914949 None:intergenic 20.0%
! TATTTCAACTCAGAAGTTAT+GGG - chr7_2:54913141-54913160 Msa1063260:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_2:54913248-54913267 Msa1063260:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_2:54913450-54913469 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_2:54913622-54913641 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_2:54913628-54913647 Msa1063260:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_2:54913657-54913676 Msa1063260:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_2:54913665-54913684 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG - chr7_2:54913952-54913971 Msa1063260:intron 25.0%
!! GAAGATTGCTACTTATATAA+TGG - chr7_2:54913974-54913993 Msa1063260:intron 25.0%
! ATGTTTGTTTCATGTAAGTA+TGG - chr7_2:54914613-54914632 Msa1063260:intron 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_2:54914702-54914721 Msa1063260:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_2:54914804-54914823 None:intergenic 25.0%
! ACATAAGGATTCTATGAATT+TGG + chr7_2:54914945-54914964 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_2:54914989-54915008 Msa1063260:five_prime_UTR 25.0%
! TTGCATGTTCAATAATACAT+GGG - chr7_2:54915024-54915043 Msa1063260:five_prime_UTR 25.0%
! TATTTCAACTCAGAAGTTAT+GGG - chr7_2:54913141-54913160 Msa1063260:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_2:54913248-54913267 Msa1063260:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_2:54913450-54913469 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_2:54913622-54913641 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_2:54913628-54913647 Msa1063260:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_2:54913657-54913676 Msa1063260:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_2:54913665-54913684 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG - chr7_2:54913952-54913971 Msa1063260:intron 25.0%
!! GAAGATTGCTACTTATATAA+TGG - chr7_2:54913974-54913993 Msa1063260:intron 25.0%
! ATGTTTGTTTCATGTAAGTA+TGG - chr7_2:54914613-54914632 Msa1063260:intron 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_2:54914702-54914721 Msa1063260:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_2:54914804-54914823 None:intergenic 25.0%
! ACATAAGGATTCTATGAATT+TGG + chr7_2:54914945-54914964 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_2:54914989-54915008 Msa1063260:five_prime_UTR 25.0%
CTATTTCAACTCAGAAGTTA+TGG - chr7_2:54913140-54913159 Msa1063260:three_prime_UTR 30.0%
AATCATATTATGGTGAAGGT+TGG - chr7_2:54913252-54913271 Msa1063260:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_2:54913253-54913272 Msa1063260:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_2:54913329-54913348 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_2:54913525-54913544 Msa1063260:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_2:54913713-54913732 None:intergenic 30.0%
! TTTTCTATGTATTCCTGCAA+TGG + chr7_2:54913948-54913967 None:intergenic 30.0%
AACACAATTGAAATTGTACG+TGG - chr7_2:54914049-54914068 Msa1063260:intron 30.0%
! TACATTTGTTAAGGGAACAA+AGG + chr7_2:54914383-54914402 None:intergenic 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_2:54914518-54914537 Msa1063260:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_2:54914559-54914578 Msa1063260:CDS 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_2:54914839-54914858 Msa1063260:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_2:54914852-54914871 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_2:54914852-54914871 Msa1063260:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_2:54914853-54914872 Msa1063260:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_2:54914981-54915000 Msa1063260:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_2:54915023-54915042 Msa1063260:five_prime_UTR 30.0%
TGCATGTTCAATAATACATG+GGG - chr7_2:54915025-54915044 Msa1063260:five_prime_UTR 30.0%
CTATTTCAACTCAGAAGTTA+TGG - chr7_2:54913140-54913159 Msa1063260:three_prime_UTR 30.0%
AATCATATTATGGTGAAGGT+TGG - chr7_2:54913252-54913271 Msa1063260:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_2:54913253-54913272 Msa1063260:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_2:54913329-54913348 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_2:54913525-54913544 Msa1063260:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_2:54913713-54913732 None:intergenic 30.0%
! TTTTCTATGTATTCCTGCAA+TGG + chr7_2:54913948-54913967 None:intergenic 30.0%
AACACAATTGAAATTGTACG+TGG - chr7_2:54914049-54914068 Msa1063260:intron 30.0%
! TACATTTGTTAAGGGAACAA+AGG + chr7_2:54914383-54914402 None:intergenic 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_2:54914518-54914537 Msa1063260:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_2:54914559-54914578 Msa1063260:CDS 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_2:54914839-54914858 Msa1063260:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_2:54914852-54914871 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_2:54914852-54914871 Msa1063260:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_2:54914853-54914872 Msa1063260:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_2:54914981-54915000 Msa1063260:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_2:54915023-54915042 Msa1063260:five_prime_UTR 30.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_2:54913254-54913273 Msa1063260:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_2:54913323-54913342 Msa1063260:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_2:54913356-54913375 Msa1063260:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_2:54913360-54913379 Msa1063260:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_2:54913361-54913380 Msa1063260:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_2:54913453-54913472 Msa1063260:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_2:54913474-54913493 None:intergenic 35.0%
! TGAGCTTAACTTAGTTGGTA+TGG + chr7_2:54913496-54913515 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_2:54913529-54913548 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_2:54913542-54913561 Msa1063260:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_2:54913676-54913695 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_2:54913692-54913711 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_2:54913693-54913712 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_2:54913710-54913729 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_2:54913873-54913892 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_2:54913873-54913892 Msa1063260:intron 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_2:54914465-54914484 Msa1063260:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_2:54914466-54914485 Msa1063260:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_2:54914545-54914564 Msa1063260:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_2:54914571-54914590 None:intergenic 35.0%
CAATTCAGAAGAGAGATGAT+TGG - chr7_2:54914586-54914605 Msa1063260:intron 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_2:54914743-54914762 Msa1063260:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_2:54914775-54914794 Msa1063260:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_2:54914776-54914795 Msa1063260:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_2:54914816-54914835 Msa1063260:CDS 35.0%
GCATGTTCAATAATACATGG+GGG - chr7_2:54915026-54915045 Msa1063260:five_prime_UTR 35.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_2:54913254-54913273 Msa1063260:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_2:54913323-54913342 Msa1063260:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_2:54913356-54913375 Msa1063260:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_2:54913360-54913379 Msa1063260:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_2:54913361-54913380 Msa1063260:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_2:54913453-54913472 Msa1063260:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_2:54913474-54913493 None:intergenic 35.0%
! TGAGCTTAACTTAGTTGGTA+TGG + chr7_2:54913496-54913515 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_2:54913529-54913548 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_2:54913542-54913561 Msa1063260:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_2:54913676-54913695 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_2:54913692-54913711 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_2:54913693-54913712 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_2:54913710-54913729 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_2:54913873-54913892 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_2:54913873-54913892 Msa1063260:intron 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_2:54914465-54914484 Msa1063260:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_2:54914466-54914485 Msa1063260:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_2:54914545-54914564 Msa1063260:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_2:54914571-54914590 None:intergenic 35.0%
CAATTCAGAAGAGAGATGAT+TGG - chr7_2:54914586-54914605 Msa1063260:intron 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_2:54914743-54914762 Msa1063260:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_2:54914775-54914794 Msa1063260:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_2:54914776-54914795 Msa1063260:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_2:54914816-54914835 Msa1063260:CDS 35.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_2:54913362-54913381 Msa1063260:CDS 40.0%
TTCTCACTTGTATGCTCGTA+AGG - chr7_2:54913394-54913413 Msa1063260:intron 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_2:54913543-54913562 Msa1063260:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_2:54913544-54913563 Msa1063260:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_2:54913566-54913585 Msa1063260:CDS 40.0%
CACCTCTGATACTCTTATAC+TGG - chr7_2:54913817-54913836 Msa1063260:intron 40.0%
!! GACCAGTATAAGAGTATCAG+AGG + chr7_2:54913822-54913841 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_2:54913876-54913895 Msa1063260:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_2:54913906-54913925 Msa1063260:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_2:54913939-54913958 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_2:54914304-54914323 None:intergenic 40.0%
! CTAATTTGTGCCTCGTTGAT+CGG + chr7_2:54914344-54914363 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_2:54914722-54914741 Msa1063260:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_2:54914723-54914742 Msa1063260:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_2:54914724-54914743 Msa1063260:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_2:54914793-54914812 Msa1063260:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_2:54914828-54914847 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_2:54914898-54914917 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_2:54914906-54914925 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_2:54914904-54914923 Msa1063260:intron 40.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_2:54913362-54913381 Msa1063260:CDS 40.0%
TTCTCACTTGTATGCTCGTA+AGG - chr7_2:54913394-54913413 Msa1063260:intron 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_2:54913543-54913562 Msa1063260:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_2:54913544-54913563 Msa1063260:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_2:54913566-54913585 Msa1063260:CDS 40.0%
CACCTCTGATACTCTTATAC+TGG - chr7_2:54913817-54913836 Msa1063260:intron 40.0%
!! GACCAGTATAAGAGTATCAG+AGG + chr7_2:54913822-54913841 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_2:54913876-54913895 Msa1063260:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_2:54913906-54913925 Msa1063260:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_2:54913939-54913958 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_2:54914304-54914323 None:intergenic 40.0%
! CTAATTTGTGCCTCGTTGAT+CGG + chr7_2:54914344-54914363 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_2:54914722-54914741 Msa1063260:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_2:54914723-54914742 Msa1063260:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_2:54914724-54914743 Msa1063260:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_2:54914793-54914812 Msa1063260:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_2:54914828-54914847 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_2:54914898-54914917 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_2:54914906-54914925 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_2:54914904-54914923 Msa1063260:intron 40.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_2:54913177-54913196 Msa1063260:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_2:54913181-54913200 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_2:54913190-54913209 None:intergenic 45.0%
AAGGTTGGGGAGCAATTAAG+AGG - chr7_2:54913267-54913286 Msa1063260:CDS 45.0%
AGGTTGGGGAGCAATTAAGA+GGG - chr7_2:54913268-54913287 Msa1063260:CDS 45.0%
CCTCGTGAGCTTAACTTAGT+TGG + chr7_2:54913501-54913520 None:intergenic 45.0%
CCAACTAAGTTAAGCTCACG+AGG - chr7_2:54913498-54913517 Msa1063260:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_2:54913857-54913876 Msa1063260:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_2:54913862-54913881 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_2:54914297-54914316 Msa1063260:intron 45.0%
CGATCAACGAGGCACAAATT+AGG - chr7_2:54914342-54914361 Msa1063260:intron 45.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_2:54913177-54913196 Msa1063260:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_2:54913181-54913200 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_2:54913190-54913209 None:intergenic 45.0%
AAGGTTGGGGAGCAATTAAG+AGG - chr7_2:54913267-54913286 Msa1063260:CDS 45.0%
AGGTTGGGGAGCAATTAAGA+GGG - chr7_2:54913268-54913287 Msa1063260:CDS 45.0%
CCTCGTGAGCTTAACTTAGT+TGG + chr7_2:54913501-54913520 None:intergenic 45.0%
CCAACTAAGTTAAGCTCACG+AGG - chr7_2:54913498-54913517 Msa1063260:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_2:54913857-54913876 Msa1063260:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_2:54913862-54913881 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_2:54914297-54914316 Msa1063260:intron 45.0%
CGATCAACGAGGCACAAATT+AGG - chr7_2:54914342-54914361 Msa1063260:intron 45.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_2:54913287-54913306 Msa1063260:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_2:54913288-54913307 Msa1063260:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_2:54913289-54913308 Msa1063260:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_2:54913290-54913309 Msa1063260:CDS 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_2:54913557-54913576 Msa1063260:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_2:54913585-54913604 Msa1063260:CDS 50.0%
GCAATGGTACATGAGGACCA+AGG + chr7_2:54913932-54913951 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_2:54913932-54913951 Msa1063260:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_2:54914341-54914360 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_2:54914912-54914931 None:intergenic 50.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_2:54913287-54913306 Msa1063260:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_2:54913288-54913307 Msa1063260:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_2:54913289-54913308 Msa1063260:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_2:54913290-54913309 Msa1063260:CDS 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_2:54913557-54913576 Msa1063260:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_2:54913585-54913604 Msa1063260:CDS 50.0%
GCAATGGTACATGAGGACCA+AGG + chr7_2:54913932-54913951 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_2:54913932-54913951 Msa1063260:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_2:54914341-54914360 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_2:54914912-54914931 None:intergenic 50.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_2:54913299-54913318 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_2:54913303-54913322 Msa1063260:CDS 55.0%
CGTCCATATCCAAGTGGCCT+TGG - chr7_2:54913912-54913931 Msa1063260:intron 55.0%
GGACCAAGGCCACTTGGATA+TGG + chr7_2:54913918-54913937 None:intergenic 55.0%
ACATGAGGACCAAGGCCACT+TGG + chr7_2:54913924-54913943 None:intergenic 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_2:54914331-54914350 Msa1063260:intron 55.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_2:54913299-54913318 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_2:54913303-54913322 Msa1063260:CDS 55.0%
CGTCCATATCCAAGTGGCCT+TGG - chr7_2:54913912-54913931 Msa1063260:intron 55.0%
GGACCAAGGCCACTTGGATA+TGG + chr7_2:54913918-54913937 None:intergenic 55.0%
ACATGAGGACCAAGGCCACT+TGG + chr7_2:54913924-54913943 None:intergenic 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_2:54914331-54914350 Msa1063260:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 54913081 54915046 54913081 ID=Msa1063260;Name=Msa1063260
chr7_2 mRNA 54913081 54915046 54913081 ID=Msa1063260-mRNA-1;Parent=Msa1063260;Name=Msa1063260-mRNA-1;_AED=0.38;_eAED=0.38;_QI=78|1|0.71|1|1|1|7|114|280
chr7_2 exon 54913081 54913408 54913081 ID=Msa1063260-mRNA-1:exon:10210;Parent=Msa1063260-mRNA-1
chr7_2 exon 54913502 54913651 54913502 ID=Msa1063260-mRNA-1:exon:10209;Parent=Msa1063260-mRNA-1
chr7_2 exon 54913755 54913828 54913755 ID=Msa1063260-mRNA-1:exon:10208;Parent=Msa1063260-mRNA-1
chr7_2 exon 54914132 54914272 54914132 ID=Msa1063260-mRNA-1:exon:10207;Parent=Msa1063260-mRNA-1
chr7_2 exon 54914503 54914580 54914503 ID=Msa1063260-mRNA-1:exon:10206;Parent=Msa1063260-mRNA-1
chr7_2 exon 54914712 54914857 54914712 ID=Msa1063260-mRNA-1:exon:10205;Parent=Msa1063260-mRNA-1
chr7_2 exon 54914929 54915046 54914929 ID=Msa1063260-mRNA-1:exon:10204;Parent=Msa1063260-mRNA-1
chr7_2 five_prime_UTR 54914969 54915046 54914969 ID=Msa1063260-mRNA-1:five_prime_utr;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54914929 54914968 54914929 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54914712 54914857 54914712 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54914503 54914580 54914503 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54914132 54914272 54914132 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54913755 54913828 54913755 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54913502 54913651 54913502 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 CDS 54913195 54913408 54913195 ID=Msa1063260-mRNA-1:cds;Parent=Msa1063260-mRNA-1
chr7_2 three_prime_UTR 54913081 54913194 54913081 ID=Msa1063260-mRNA-1:three_prime_utr;Parent=Msa1063260-mRNA-1
Gene Sequence

>Msa1063260

ATGGGATGCATATTATCTACCTTTCAATCCTCTCTCTCTGGTTGGGGAGCAATTAAGAGGGTTCTTCCATTGCACAGTGGGGGAGCAATAACGAGGCCTAAAATTGTGTTGTTTGGTTCTTCAATTGTTCAATACAGTTGCTATGAAGGTTGGGGAGCTACTCTTTCTCACTTGTATGCTCGTAAGGCTGATATAGTTTTGCGGGGATATGCTGCTTGGAATTCAAGGCGTGCTGTGCAAGTTTTGGATAAAATTTTTCCTAAGAATGCCATTGAGCAACCATCATTGGTGATTGTGTACTTTGGTGGTAATGATTGTATTCGTCCATATCCAAGTGGCCTTGGTCCTCATGTACCATTGCAGGAATACATAGAAAATATGAGGAAGATTGCTACTTATATAATGAGCCTGTCACATAAGACTCGGATTATATTTCTCAGTAGTCCTCCGATCAACGAGGCACAAATTAGGATCAACATTGATGAATTTGGGCAACAAATAAGAACAAATGAAATAAGTCGAATATATTCAGAAGCGTGTTTGGATATGTGTCGTGAGATGAAAATAAAGGCCATTGATATGTGGTCTGCAATTCAGAAGAGAGATGATTGGAGAGATGTTTGTTTCATTGATGGAGTTCATCTATCAACTGAGGGGAGTGAAATATTAACAAAGGAGATATTGAATGTCATAAAAGAAGCAGAGTGGGAACCAAGTCTATATTGGAAGTTAATGCCAGCTGAATTTGGAGAAGATTCACCTTATGATATGGTTTCTCTTGATGGGAAGACAAATATTAATTACTCCAATGTGCCTTTTCCTCAAGATGTAGAGTGGCCTTGA

Protein sequence

>Msa1063260

MGCILSTFQSSLSGWGAIKRVLPLHSGGAITRPKIVLFGSSIVQYSCYEGWGATLSHLYARKADIVLRGYAAWNSRRAVQVLDKIFPKNAIEQPSLVIVYFGGNDCIRPYPSGLGPHVPLQEYIENMRKIATYIMSLSHKTRIIFLSSPPINEAQIRINIDEFGQQIRTNEISRIYSEACLDMCREMKIKAIDMWSAIQKRDDWRDVCFIDGVHLSTEGSEILTKEILNVIKEAEWEPSLYWKLMPAEFGEDSPYDMVSLDGKTNINYSNVPFPQDVEWP*