AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686040 MtrunA17_Chr4g0034821 94.020 301 18 0 1 301 1 301 0.0 572
Msa0686040 MtrunA17_Chr3g0144451 68.000 275 77 1 27 301 22 285 1.18e-135 385
Msa0686040 MtrunA17_Chr3g0138231 70.683 249 71 1 55 301 28 276 1.13e-129 370
Msa0686040 MtrunA17_Chr3g0144421 52.419 248 113 2 44 291 60 302 4.81e-94 280
Msa0686040 MtrunA17_Chr3g0144391 46.460 226 118 1 66 291 283 505 1.98e-69 224
Msa0686040 MtrunA17_Chr3g0144411 44.690 226 122 1 66 291 316 538 1.10e-66 217
Msa0686040 MtrunA17_Chr4g0034451 40.927 259 147 4 35 291 272 526 1.71e-66 216
Msa0686040 MtrunA17_Chr4g0034731 43.043 230 126 4 64 291 206 432 1.37e-64 209
Msa0686040 MtrunA17_Chr4g0034721 45.662 219 114 4 75 291 361 576 2.73e-62 207
Msa0686040 MtrunA17_Chr1g0147271 41.850 227 127 4 67 292 163 385 2.89e-60 196
Msa0686040 MtrunA17_Chr3g0139431 43.668 229 121 5 67 292 99 322 8.34e-60 193
Msa0686040 MtrunA17_Chr4g0034691 43.379 219 119 3 75 291 493 708 2.70e-59 201
Msa0686040 MtrunA17_Chr1g0147301 38.433 268 148 7 30 292 30 285 3.50e-57 185
Msa0686040 MtrunA17_Chr1g0147291 39.344 244 132 6 50 292 39 267 2.05e-55 180
Msa0686040 MtrunA17_Chr1g0146631 40.969 227 127 4 67 292 105 325 3.37e-54 179
Msa0686040 MtrunA17_Chr6g0485051 43.062 209 113 4 87 292 1 206 3.70e-54 175
Msa0686040 MtrunA17_Chr1g0147321 39.732 224 127 5 67 289 19 235 3.94e-54 177
Msa0686040 MtrunA17_Chr1g0147311 40.625 224 127 5 71 292 137 356 1.39e-53 178
Msa0686040 MtrunA17_Chr1g0147331 40.529 227 128 4 67 292 105 325 3.83e-53 176
Msa0686040 MtrunA17_Chr1g0147241 39.381 226 131 4 67 292 94 313 3.60e-51 171
Msa0686040 MtrunA17_Chr1g0147261 38.288 222 131 4 71 292 85 300 6.06e-50 167
Msa0686040 MtrunA17_Chr1g0147251 37.826 230 130 5 63 292 27 243 1.82e-49 164
Msa0686040 MtrunA17_Chr8g0365361 33.636 220 133 6 75 289 181 392 1.82e-32 124
Msa0686040 MtrunA17_Chr8g0365381 33.484 221 132 7 75 289 429 640 6.45e-30 119
Msa0686040 MtrunA17_Chr8g0365401 33.784 222 132 8 75 290 412 624 2.09e-29 117
Msa0686040 MtrunA17_Chr5g0413591 33.186 226 128 8 75 290 415 627 4.91e-29 116
Msa0686040 MtrunA17_Chr3g0117791 32.420 219 139 6 75 290 413 625 1.20e-25 106
Msa0686040 MtrunA17_Chr4g0076231 31.847 157 102 4 135 289 3 156 7.48e-22 89.7
Msa0686040 MtrunA17_Chr4g0034051 49.367 79 38 2 215 291 1 79 8.42e-22 87.4
Msa0686040 MtrunA17_Chr8g0355311 34.211 152 90 5 144 295 53 194 2.84e-18 81.3
Msa0686040 MtrunA17_Chr5g0412981 28.440 218 149 5 74 289 196 408 5.11e-18 83.6
Msa0686040 MtrunA17_Chr5g0412981 28.655 171 109 4 112 273 18 184 1.14e-13 70.9
Msa0686040 MtrunA17_Chr5g0412991 28.440 218 149 5 74 289 196 408 5.21e-18 83.6
Msa0686040 MtrunA17_Chr5g0412991 28.070 171 110 4 112 273 18 184 1.10e-12 67.8
Msa0686040 MtrunA17_Chr8g0355871 35.811 148 85 6 144 291 85 222 4.77e-17 78.6
Msa0686040 MtrunA17_Chr5g0412951 28.342 187 121 4 112 289 25 207 6.12e-17 77.8
Msa0686040 MtrunA17_Chr8g0355861 33.333 153 92 4 144 296 123 265 7.39e-17 79.0
Msa0686040 MtrunA17_Chr2g0318871 29.279 222 121 9 75 293 73 261 1.01e-16 78.6
Msa0686040 MtrunA17_Chr2g0318901 33.333 144 86 6 150 293 128 261 1.27e-16 78.2
Msa0686040 MtrunA17_Chr8g0355321 33.333 141 84 5 151 291 172 302 1.44e-15 75.5
Msa0686040 MtrunA17_Chr8g0355331 33.333 141 84 5 151 291 291 421 3.07e-15 75.5
Msa0686040 MtrunA17_Chr8g0355841 34.483 145 85 6 151 295 379 513 3.16e-14 72.8
Msa0686040 MtrunA17_Chr8g0371951 40.789 76 40 3 208 280 14 87 3.79e-14 67.0
Msa0686040 MtrunA17_Chr1g0168781 30.464 151 90 5 144 291 121 259 2.53e-13 68.9
Msa0686040 MtrunA17_Chr8g0355831 33.108 148 89 5 144 291 214 351 9.95e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686040 AT1G49320.1 44.978 229 121 2 69 292 52 280 6.69e-67 211
Msa0686040 AT5G25610.1 40.000 225 130 4 67 289 168 389 9.93e-52 175
Msa0686040 AT1G70370.2 33.047 233 119 7 75 290 411 623 1.79e-29 118
Msa0686040 AT1G70370.1 33.047 233 119 7 75 290 411 623 1.79e-29 118
Msa0686040 AT1G23760.1 32.353 204 120 5 92 290 429 619 3.65e-27 111
Msa0686040 AT1G60390.1 30.667 225 133 8 75 289 409 620 1.88e-25 106

Find 73 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTCTTGGCCAAAATTT+AGG 0.117666 4_4:+50378584 None:intergenic
ACACCCTGAACTTCCAATTT+TGG 0.159002 4_4:+50378011 None:intergenic
TTTCATATGGGTTCCAAAAT+TGG 0.163908 4_4:-50378024 Msa0686040:CDS
CATGTTTCATTTCAGGTTCT+TGG 0.168453 4_4:-50378095 Msa0686040:CDS
CTTCAACTTCCCCTAAATTT+TGG 0.169638 4_4:-50378595 Msa0686040:CDS
ACATGGTCATGTTTCATTTC+AGG 0.187970 4_4:-50378102 Msa0686040:CDS
GATTTCACTCAAACCATTCT+TGG 0.227601 4_4:-50378389 Msa0686040:CDS
GGAAGTTTCTTCAATGAAAA+AGG 0.233694 4_4:+50378548 None:intergenic
ATATCCTATTCTCACTTTCT+TGG 0.238700 4_4:+50378204 None:intergenic
TATCTCTTGGCCAAAATTTA+GGG 0.266762 4_4:+50378585 None:intergenic
GTTTCACTTGATGGTGATAA+TGG 0.290573 4_4:-50378176 Msa0686040:CDS
GAATTTCACTTCTCCTTTGA+TGG 0.304953 4_4:+50378439 None:intergenic
GGAAGTTGAAGGGTCTCTTT+TGG 0.310572 4_4:+50378607 None:intergenic
CTGAAAAGTGACACTTGATT+TGG 0.319135 4_4:+50378325 None:intergenic
GGTTCCAAAATTGGAAGTTC+AGG 0.332466 4_4:-50378015 Msa0686040:CDS
TTCCAGCTGATAATTTCATA+TGG 0.349895 4_4:-50378037 Msa0686040:CDS
TGATGGTGATAATGGGGATT+TGG 0.354761 4_4:-50378168 Msa0686040:CDS
TCATATGGATACTTCTCATT+GGG 0.365983 4_4:-50378126 Msa0686040:CDS
TTTCACTTGATGGTGATAAT+GGG 0.372984 4_4:-50378175 Msa0686040:CDS
AATATCTACATGATCATATC+AGG 0.377551 4_4:+50379110 None:intergenic
AAGGGTATCTACCATTGCTT+TGG 0.378961 4_4:+50378481 None:intergenic
CAGGTTCTTGGTGTTGTGCC+AGG 0.389898 4_4:-50378083 Msa0686040:CDS
ATTTATTGAGAATAATGTAT+TGG 0.396779 4_4:-50377837 Msa0686040:three_prime_UTR
ATATATAGAGTTTCACTTGA+TGG 0.401586 4_4:-50378185 Msa0686040:CDS
AGGATCTCAGATATAAACTT+TGG 0.401643 4_4:+50378997 None:intergenic
GTGTTCTATTTGATGTTCAT+TGG 0.403592 4_4:+50378730 None:intergenic
TCTACCATTGCTTTGGCTTG+TGG 0.404591 4_4:+50378488 None:intergenic
TATTCTCACTTTCTTGGCTA+TGG 0.412269 4_4:+50378210 None:intergenic
GTCATATGGATACTTCTCAT+TGG 0.421442 4_4:-50378127 Msa0686040:CDS
ACCTTGAAAGACTTAAAAGT+TGG 0.422790 4_4:-50378653 Msa0686040:CDS
GTGTGACACGCCACCATCTT+TGG 0.423518 4_4:+50378263 None:intergenic
TGGCAATAGAAAACAGCATA+AGG 0.425668 4_4:+50378230 None:intergenic
TCACATGGACCCTTCTGTTA+TGG 0.432901 4_4:-50378684 Msa0686040:CDS
AGCTATGGTTGTTTGTCATA+TGG 0.433565 4_4:-50378141 Msa0686040:CDS
GTTTGCTCTCACATTCTGTA+AGG 0.443520 4_4:+50378462 None:intergenic
AGTGAATCAGCTTTATCTCT+TGG 0.451780 4_4:+50378572 None:intergenic
TGGGGATTTGGTGGAAGCTA+TGG 0.459502 4_4:-50378156 Msa0686040:CDS
TCCAGCTGATAATTTCATAT+GGG 0.459838 4_4:-50378036 Msa0686040:CDS
TGACACACATTAGAACTTCC+TGG 0.463418 4_4:+50378065 None:intergenic
CCTTGAAAGACTTAAAAGTT+GGG 0.465337 4_4:-50378652 Msa0686040:CDS
CAAAATTTAGGGGAAGTTGA+AGG 0.467776 4_4:+50378596 None:intergenic
AATTTCACTTCTCCTTTGAT+GGG 0.477046 4_4:+50378440 None:intergenic
TGGTGATAATGGGGATTTGG+TGG 0.481792 4_4:-50378165 Msa0686040:CDS
TGTTGAAATAAGTACTCTCC+TGG 0.484120 4_4:-50377911 Msa0686040:three_prime_UTR
CTATATTCGACAAGATTATG+AGG 0.498845 4_4:-50378295 Msa0686040:CDS
GAGGATTTCAGCACCAAAGA+TGG 0.504203 4_4:-50378276 Msa0686040:CDS
GGCAATAGAAAACAGCATAA+GGG 0.512658 4_4:+50378231 None:intergenic
GTTCCAAAATTGGAAGTTCA+GGG 0.515552 4_4:-50378014 Msa0686040:CDS
ACCCATATGAAATTATCAGC+TGG 0.518839 4_4:+50378035 None:intergenic
AAGCATAGATTCTAAAGAAG+TGG 0.527429 4_4:+50378412 None:intergenic
TAGAAAACAGCATAAGGGTA+AGG 0.533811 4_4:+50378236 None:intergenic
ATAGCCAAGAAAGTGAGAAT+AGG 0.536032 4_4:-50378208 Msa0686040:CDS
TTTGCTCTCACATTCTGTAA+GGG 0.540182 4_4:+50378463 None:intergenic
GATACTTCTCATTGGGGACA+TGG 0.551200 4_4:-50378119 Msa0686040:CDS
AGCAGAGCAAGAGAATTAGC+TGG 0.551256 4_4:-50378797 Msa0686040:CDS
GTACTAGTAGATGAAGAAAG+AGG 0.558137 4_4:+50378977 None:intergenic
AGAAACTCAAACATCAAACT+TGG 0.558625 4_4:+50377941 None:intergenic
TTCACTTGATGGTGATAATG+GGG 0.559109 4_4:-50378174 Msa0686040:CDS
AAAATTTAGGGGAAGTTGAA+GGG 0.570464 4_4:+50378597 None:intergenic
GTGAAGAACACCATAACAGA+AGG 0.585539 4_4:+50378674 None:intergenic
TGTGAGAGCAAACCCATCAA+AGG 0.590120 4_4:-50378452 Msa0686040:CDS
ATCTCTTGGCCAAAATTTAG+GGG 0.592699 4_4:+50378586 None:intergenic
CTCTCCACAAGCCAAAGCAA+TGG 0.615953 4_4:-50378492 Msa0686040:CDS
TGGAACAGAAAGCAAACACT+TGG 0.622898 4_4:-50378777 Msa0686040:CDS
GATTTCAGCACCAAAGATGG+TGG 0.624452 4_4:-50378273 Msa0686040:CDS
ATCTCTGTCTTTCTACACAA+AGG 0.629482 4_4:-50379060 Msa0686040:five_prime_UTR
CATATGGATACTTCTCATTG+GGG 0.635326 4_4:-50378125 Msa0686040:CDS
GTTGAAATAAGTACTCTCCT+GGG 0.635439 4_4:-50377910 Msa0686040:three_prime_UTR
TGCACATAATCACAATCACA+TGG 0.646984 4_4:-50378699 Msa0686040:CDS
GAGATGCCTAAATCTAACAC+CGG 0.665460 4_4:+50379078 None:intergenic
TGAAGAACACCATAACAGAA+GGG 0.675219 4_4:+50378675 None:intergenic
TCATCTACTAGTACTAATCA+CGG 0.682328 4_4:-50378968 Msa0686040:intron
TAGCATCATTACATGTACCC+AGG 0.694629 4_4:+50377893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTATAGTATTAAAAAA+TGG - chr4_4:50379082-50379101 Msa0686040:five_prime_UTR 10.0%
!!! AGTTTTATAGTATTAAAAAA+TGG - chr4_4:50379082-50379101 Msa0686040:five_prime_UTR 10.0%
!!! TGTAGATATTAATTATTTTC+CGG - chr4_4:50377780-50377799 Msa0686040:three_prime_UTR 15.0%
!!! TTTTTTTTCTTTCTTTTTCT+TGG - chr4_4:50377952-50377971 Msa0686040:three_prime_UTR 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_4:50377978-50377997 Msa0686040:three_prime_UTR 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_4:50378056-50378075 Msa0686040:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_4:50379040-50379059 Msa0686040:exon 15.0%
!!! TGTAGATATTAATTATTTTC+CGG - chr4_4:50377780-50377799 Msa0686040:three_prime_UTR 15.0%
!!! TTTTTTTTCTTTCTTTTTCT+TGG - chr4_4:50377952-50377971 Msa0686040:three_prime_UTR 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_4:50377978-50377997 Msa0686040:three_prime_UTR 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_4:50378056-50378075 Msa0686040:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_4:50379040-50379059 Msa0686040:exon 15.0%
! AATATCTACATGATCATATC+AGG + chr4_4:50377770-50377789 None:intergenic 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_4:50378504-50378523 None:intergenic 25.0%
! ATATATAGAGTTTCACTTGA+TGG - chr4_4:50378692-50378711 Msa0686040:CDS 25.0%
! AATATCTACATGATCATATC+AGG + chr4_4:50377770-50377789 None:intergenic 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_4:50378504-50378523 None:intergenic 25.0%
! ATATATAGAGTTTCACTTGA+TGG - chr4_4:50378692-50378711 Msa0686040:CDS 25.0%
!! TATTTTCCGGTGTTAGATTT+AGG - chr4_4:50377793-50377812 Msa0686040:three_prime_UTR 30.0%
AGGATCTCAGATATAAACTT+TGG + chr4_4:50377883-50377902 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_4:50377909-50377928 Msa0686040:three_prime_UTR 30.0%
GTGTTCTATTTGATGTTCAT+TGG + chr4_4:50378150-50378169 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_4:50378224-50378243 Msa0686040:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_4:50378225-50378244 Msa0686040:CDS 30.0%
AAAATTTAGGGGAAGTTGAA+GGG + chr4_4:50378283-50378302 None:intergenic 30.0%
TATCTCTTGGCCAAAATTTA+GGG + chr4_4:50378295-50378314 None:intergenic 30.0%
TTATCTCTTGGCCAAAATTT+AGG + chr4_4:50378296-50378315 None:intergenic 30.0%
GGAAGTTTCTTCAATGAAAA+AGG + chr4_4:50378332-50378351 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_4:50378440-50378459 None:intergenic 30.0%
! AAGCATAGATTCTAAAGAAG+TGG + chr4_4:50378468-50378487 None:intergenic 30.0%
CTATATTCGACAAGATTATG+AGG - chr4_4:50378582-50378601 Msa0686040:CDS 30.0%
ATATCCTATTCTCACTTTCT+TGG + chr4_4:50378676-50378695 None:intergenic 30.0%
!! TTTCACTTGATGGTGATAAT+GGG - chr4_4:50378702-50378721 Msa0686040:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_4:50378751-50378770 Msa0686040:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_4:50378840-50378859 Msa0686040:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_4:50378841-50378860 Msa0686040:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_4:50378853-50378872 Msa0686040:intron 30.0%
AGAAACTCAAACATCAAACT+TGG + chr4_4:50378939-50378958 None:intergenic 30.0%
!! TATTTTCCGGTGTTAGATTT+AGG - chr4_4:50377793-50377812 Msa0686040:three_prime_UTR 30.0%
AGGATCTCAGATATAAACTT+TGG + chr4_4:50377883-50377902 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_4:50377909-50377928 Msa0686040:three_prime_UTR 30.0%
GTGTTCTATTTGATGTTCAT+TGG + chr4_4:50378150-50378169 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_4:50378224-50378243 Msa0686040:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_4:50378225-50378244 Msa0686040:CDS 30.0%
AAAATTTAGGGGAAGTTGAA+GGG + chr4_4:50378283-50378302 None:intergenic 30.0%
TATCTCTTGGCCAAAATTTA+GGG + chr4_4:50378295-50378314 None:intergenic 30.0%
TTATCTCTTGGCCAAAATTT+AGG + chr4_4:50378296-50378315 None:intergenic 30.0%
GGAAGTTTCTTCAATGAAAA+AGG + chr4_4:50378332-50378351 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_4:50378440-50378459 None:intergenic 30.0%
! AAGCATAGATTCTAAAGAAG+TGG + chr4_4:50378468-50378487 None:intergenic 30.0%
CTATATTCGACAAGATTATG+AGG - chr4_4:50378582-50378601 Msa0686040:CDS 30.0%
ATATCCTATTCTCACTTTCT+TGG + chr4_4:50378676-50378695 None:intergenic 30.0%
!! TTTCACTTGATGGTGATAAT+GGG - chr4_4:50378702-50378721 Msa0686040:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_4:50378751-50378770 Msa0686040:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_4:50378840-50378859 Msa0686040:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_4:50378841-50378860 Msa0686040:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_4:50378853-50378872 Msa0686040:intron 30.0%
AGAAACTCAAACATCAAACT+TGG + chr4_4:50378939-50378958 None:intergenic 30.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_4:50377817-50377836 Msa0686040:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_4:50377903-50377922 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_4:50378033-50378052 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_4:50378178-50378197 Msa0686040:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_4:50378205-50378224 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_4:50378228-50378247 None:intergenic 35.0%
CAAAATTTAGGGGAAGTTGA+AGG + chr4_4:50378284-50378303 None:intergenic 35.0%
! CTTCAACTTCCCCTAAATTT+TGG - chr4_4:50378282-50378301 Msa0686040:CDS 35.0%
ATCTCTTGGCCAAAATTTAG+GGG + chr4_4:50378294-50378313 None:intergenic 35.0%
! AGTGAATCAGCTTTATCTCT+TGG + chr4_4:50378308-50378327 None:intergenic 35.0%
!! GAGAAGATTTTGAGAAGAGA+TGG + chr4_4:50378353-50378372 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_4:50378417-50378436 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_4:50378441-50378460 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_4:50378488-50378507 Msa0686040:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_4:50378555-50378574 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_4:50378644-50378663 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_4:50378649-50378668 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_4:50378650-50378669 None:intergenic 35.0%
TATTCTCACTTTCTTGGCTA+TGG + chr4_4:50378670-50378689 None:intergenic 35.0%
ATAGCCAAGAAAGTGAGAAT+AGG - chr4_4:50378669-50378688 Msa0686040:CDS 35.0%
!! GTTTCACTTGATGGTGATAA+TGG - chr4_4:50378701-50378720 Msa0686040:CDS 35.0%
!! TTCACTTGATGGTGATAATG+GGG - chr4_4:50378703-50378722 Msa0686040:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_4:50378736-50378755 Msa0686040:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_4:50378750-50378769 Msa0686040:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_4:50378752-50378771 Msa0686040:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_4:50378775-50378794 Msa0686040:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_4:50378782-50378801 Msa0686040:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_4:50378845-50378864 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_4:50378863-50378882 Msa0686040:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_4:50378966-50378985 Msa0686040:intron 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_4:50378967-50378986 Msa0686040:intron 35.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_4:50377817-50377836 Msa0686040:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_4:50377903-50377922 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_4:50378033-50378052 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_4:50378178-50378197 Msa0686040:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_4:50378205-50378224 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_4:50378228-50378247 None:intergenic 35.0%
CAAAATTTAGGGGAAGTTGA+AGG + chr4_4:50378284-50378303 None:intergenic 35.0%
! CTTCAACTTCCCCTAAATTT+TGG - chr4_4:50378282-50378301 Msa0686040:CDS 35.0%
ATCTCTTGGCCAAAATTTAG+GGG + chr4_4:50378294-50378313 None:intergenic 35.0%
! AGTGAATCAGCTTTATCTCT+TGG + chr4_4:50378308-50378327 None:intergenic 35.0%
!! GAGAAGATTTTGAGAAGAGA+TGG + chr4_4:50378353-50378372 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_4:50378417-50378436 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_4:50378441-50378460 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_4:50378488-50378507 Msa0686040:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_4:50378555-50378574 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_4:50378644-50378663 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_4:50378649-50378668 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_4:50378650-50378669 None:intergenic 35.0%
TATTCTCACTTTCTTGGCTA+TGG + chr4_4:50378670-50378689 None:intergenic 35.0%
ATAGCCAAGAAAGTGAGAAT+AGG - chr4_4:50378669-50378688 Msa0686040:CDS 35.0%
!! GTTTCACTTGATGGTGATAA+TGG - chr4_4:50378701-50378720 Msa0686040:CDS 35.0%
!! TTCACTTGATGGTGATAATG+GGG - chr4_4:50378703-50378722 Msa0686040:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_4:50378736-50378755 Msa0686040:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_4:50378750-50378769 Msa0686040:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_4:50378752-50378771 Msa0686040:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_4:50378775-50378794 Msa0686040:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_4:50378782-50378801 Msa0686040:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_4:50378845-50378864 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_4:50378863-50378882 Msa0686040:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_4:50378966-50378985 Msa0686040:intron 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_4:50378967-50378986 Msa0686040:intron 35.0%
GAGATGCCTAAATCTAACAC+CGG + chr4_4:50377802-50377821 None:intergenic 40.0%
TGGAACAGAAAGCAAACACT+TGG - chr4_4:50378100-50378119 Msa0686040:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_4:50378206-50378225 None:intergenic 40.0%
! AAGTTGAAGGGTCTCTTTTG+GGG + chr4_4:50378271-50378290 None:intergenic 40.0%
! GAAGTTGAAGGGTCTCTTTT+GGG + chr4_4:50378272-50378291 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_4:50378399-50378418 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_4:50378418-50378437 None:intergenic 40.0%
!! TGATGGTGATAATGGGGATT+TGG - chr4_4:50378709-50378728 Msa0686040:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_4:50378815-50378834 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_4:50378862-50378881 Msa0686040:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_4:50378869-50378888 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_4:50378987-50379006 None:intergenic 40.0%
GAGATGCCTAAATCTAACAC+CGG + chr4_4:50377802-50377821 None:intergenic 40.0%
TGGAACAGAAAGCAAACACT+TGG - chr4_4:50378100-50378119 Msa0686040:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_4:50378206-50378225 None:intergenic 40.0%
! AAGTTGAAGGGTCTCTTTTG+GGG + chr4_4:50378271-50378290 None:intergenic 40.0%
! GAAGTTGAAGGGTCTCTTTT+GGG + chr4_4:50378272-50378291 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_4:50378399-50378418 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_4:50378418-50378437 None:intergenic 40.0%
!! TGATGGTGATAATGGGGATT+TGG - chr4_4:50378709-50378728 Msa0686040:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_4:50378815-50378834 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_4:50378862-50378881 Msa0686040:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_4:50378869-50378888 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_4:50378987-50379006 None:intergenic 40.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_4:50378080-50378099 Msa0686040:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_4:50378193-50378212 Msa0686040:CDS 45.0%
! GGAAGTTGAAGGGTCTCTTT+TGG + chr4_4:50378273-50378292 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_4:50378392-50378411 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_4:50378425-50378444 Msa0686040:CDS 45.0%
GAGGATTTCAGCACCAAAGA+TGG - chr4_4:50378601-50378620 Msa0686040:CDS 45.0%
GATTTCAGCACCAAAGATGG+TGG - chr4_4:50378604-50378623 Msa0686040:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_4:50378712-50378731 Msa0686040:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_4:50378758-50378777 Msa0686040:CDS 45.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_4:50378080-50378099 Msa0686040:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_4:50378193-50378212 Msa0686040:CDS 45.0%
! GGAAGTTGAAGGGTCTCTTT+TGG + chr4_4:50378273-50378292 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_4:50378392-50378411 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_4:50378425-50378444 Msa0686040:CDS 45.0%
GAGGATTTCAGCACCAAAGA+TGG - chr4_4:50378601-50378620 Msa0686040:CDS 45.0%
GATTTCAGCACCAAAGATGG+TGG - chr4_4:50378604-50378623 Msa0686040:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_4:50378712-50378731 Msa0686040:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_4:50378758-50378777 Msa0686040:CDS 45.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_4:50378385-50378404 Msa0686040:CDS 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_4:50378721-50378740 Msa0686040:CDS 50.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_4:50378385-50378404 Msa0686040:CDS 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_4:50378721-50378740 Msa0686040:CDS 50.0%
GTGTGACACGCCACCATCTT+TGG + chr4_4:50378617-50378636 None:intergenic 55.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_4:50378794-50378813 Msa0686040:CDS 55.0%
GTGTGACACGCCACCATCTT+TGG + chr4_4:50378617-50378636 None:intergenic 55.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_4:50378794-50378813 Msa0686040:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 50377755 50379144 50377755 ID=Msa0686040;Name=Msa0686040
chr4_4 mRNA 50377755 50379144 50377755 ID=Msa0686040-mRNA-1;Parent=Msa0686040;Name=Msa0686040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=104|1|1|1|1|1|2|243|301
chr4_4 exon 50377755 50378831 50377755 ID=Msa0686040-mRNA-1:exon:12861;Parent=Msa0686040-mRNA-1
chr4_4 exon 50378969 50379144 50378969 ID=Msa0686040-mRNA-1:exon:12860;Parent=Msa0686040-mRNA-1
chr4_4 five_prime_UTR 50379041 50379144 50379041 ID=Msa0686040-mRNA-1:five_prime_utr;Parent=Msa0686040-mRNA-1
chr4_4 CDS 50378969 50379040 50378969 ID=Msa0686040-mRNA-1:cds;Parent=Msa0686040-mRNA-1
chr4_4 CDS 50377998 50378831 50377998 ID=Msa0686040-mRNA-1:cds;Parent=Msa0686040-mRNA-1
chr4_4 three_prime_UTR 50377755 50377997 50377755 ID=Msa0686040-mRNA-1:three_prime_utr;Parent=Msa0686040-mRNA-1
Gene Sequence

>Msa0686040

ATGCTAAGCAGAAACATGAATCCAAAGTTTATATCTGAGATCCTCTTTCTTCATCTACTAGTACTAATCACGATTTTTTATGGAAGCAGAGCAAGAGAATTAGCTGGAACAGAAAGCAAACACTTGGATATTGCACTGAACAAAACTGCTACCAATGAACATCAAATAGAACACAAACATCATGCACATAATCACAATCACATGGACCCTTCTGTTATGGTGTTCTTCACCTTGAAAGACTTAAAAGTTGGGAAAAGAATGCAAATTAATTTCCCCAAAAGAGACCCTTCAACTTCCCCTAAATTTTGGCCAAGAGATAAAGCTGATTCACTTCCTTTTTCATTGAAGAAACTTCCATCTCTTCTCAAAATCTTCTCTTTGTCTCAAGACTCTCCACAAGCCAAAGCAATGGTAGATACCCTTACAGAATGTGAGAGCAAACCCATCAAAGGAGAAGTGAAATTCTGTGCCACTTCTTTAGAATCTATGCTTGATTTCACTCAAACCATTCTTGGTTTTTCAAATGATCTTCAAGTTTATGCAACTTCACATTTAACCAAATCAAGTGTCACTTTTCAGAACTATACTATATTCGACAAGATTATGAGGATTTCAGCACCAAAGATGGTGGCGTGTCACACTATGCCTTACCCTTATGCTGTTTTCTATTGCCATAGCCAAGAAAGTGAGAATAGGATATATAGAGTTTCACTTGATGGTGATAATGGGGATTTGGTGGAAGCTATGGTTGTTTGTCATATGGATACTTCTCATTGGGGACATGGTCATGTTTCATTTCAGGTTCTTGGTGTTGTGCCAGGAAGTTCTAATGTGTGTCACTTTTTTCCAGCTGATAATTTCATATGGGTTCCAAAATTGGAAGTTCAGGGTGTTTCAGACATGTGA

Protein sequence

>Msa0686040

MLSRNMNPKFISEILFLHLLVLITIFYGSRARELAGTESKHLDIALNKTATNEHQIEHKHHAHNHNHMDPSVMVFFTLKDLKVGKRMQINFPKRDPSTSPKFWPRDKADSLPFSLKKLPSLLKIFSLSQDSPQAKAMVDTLTECESKPIKGEVKFCATSLESMLDFTQTILGFSNDLQVYATSHLTKSSVTFQNYTIFDKIMRISAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLDGDNGDLVEAMVVCHMDTSHWGHGHVSFQVLGVVPGSSNVCHFFPADNFIWVPKLEVQGVSDM*