Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865450 | XP_024626091.1 | 85.886 | 581 | 51 | 2 | 88 | 637 | 4 | 584 | 0.0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865450 | sp|Q6AVI0|RSLE2_ORYSJ | 30.631 | 666 | 391 | 18 | 67 | 673 | 64 | 717 | 2.18e-96 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865450 | A0A6P5XLY3 | 48.617 | 687 | 307 | 10 | 18 | 669 | 54 | 729 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0865450 | 0.827908 | 1.206386e-54 | -8.615850e-47 |
| Msa0017300 | Msa0865450 | -0.800930 | 1.143808e-48 | -8.615850e-47 |
| Msa0029380 | Msa0865450 | 0.816332 | 5.841019e-52 | -8.615850e-47 |
| Msa0035670 | Msa0865450 | 0.807239 | 5.571146e-50 | -8.615850e-47 |
| Msa0037180 | Msa0865450 | 0.812349 | 4.432892e-51 | -8.615850e-47 |
| Msa0057840 | Msa0865450 | 0.802665 | 5.036560e-49 | -8.615850e-47 |
| Msa0062190 | Msa0865450 | 0.800136 | 1.660441e-48 | -8.615850e-47 |
| Msa0077560 | Msa0865450 | 0.814963 | 1.178750e-51 | -8.615850e-47 |
| Msa0102240 | Msa0865450 | 0.829730 | 4.372270e-55 | -8.615850e-47 |
| Msa0106540 | Msa0865450 | 0.818033 | 2.420336e-52 | -8.615850e-47 |
| Msa0606820 | Msa0865450 | 0.816605 | 5.074074e-52 | -8.615850e-47 |
| Msa0610700 | Msa0865450 | -0.843335 | 1.493143e-58 | -8.615850e-47 |
| Msa0641990 | Msa0865450 | 0.819098 | 1.388276e-52 | -8.615850e-47 |
| Msa0681050 | Msa0865450 | 0.811628 | 6.367408e-51 | -8.615850e-47 |
| Msa0687580 | Msa0865450 | 0.815271 | 1.007141e-51 | -8.615850e-47 |
| Msa0693340 | Msa0865450 | -0.818491 | 1.906407e-52 | -8.615850e-47 |
| Msa0703950 | Msa0865450 | 0.831450 | 1.658013e-55 | -8.615850e-47 |
| Msa0719270 | Msa0865450 | 0.828857 | 7.120635e-55 | -8.615850e-47 |
| Msa0734250 | Msa0865450 | 0.822568 | 2.210057e-53 | -8.615850e-47 |
| Msa0745140 | Msa0865450 | 0.869391 | 3.207554e-66 | -8.615850e-47 |
| Msa0776640 | Msa0865450 | 0.873199 | 1.769501e-67 | -8.615850e-47 |
| Msa0813160 | Msa0865450 | 0.832441 | 9.434642e-56 | -8.615850e-47 |
| Msa0825920 | Msa0865450 | 0.873654 | 1.243617e-67 | -8.615850e-47 |
| Msa0840520 | Msa0865450 | 0.824678 | 7.087689e-54 | -8.615850e-47 |
| Msa0124910 | Msa0865450 | 0.820733 | 5.868636e-53 | -8.615850e-47 |
| Msa0139500 | Msa0865450 | 0.813209 | 2.873580e-51 | -8.615850e-47 |
| Msa0142430 | Msa0865450 | 0.814157 | 1.777487e-51 | -8.615850e-47 |
| Msa0143590 | Msa0865450 | 0.806710 | 7.205744e-50 | -8.615850e-47 |
| Msa0169410 | Msa0865450 | 0.818781 | 1.639014e-52 | -8.615850e-47 |
| Msa0177320 | Msa0865450 | 0.833097 | 6.484591e-56 | -8.615850e-47 |
| Msa0183710 | Msa0865450 | 0.805280 | 1.440412e-49 | -8.615850e-47 |
| Msa0204950 | Msa0865450 | 0.807002 | 6.251068e-50 | -8.615850e-47 |
| Msa0235290 | Msa0865450 | 0.808489 | 3.020223e-50 | -8.615850e-47 |
| Msa0386880 | Msa0865450 | 0.833538 | 5.034302e-56 | -8.615850e-47 |
| Msa0409830 | Msa0865450 | 0.817985 | 2.481359e-52 | -8.615850e-47 |
| Msa0412790 | Msa0865450 | 0.837623 | 4.660184e-57 | -8.615850e-47 |
| Msa0440350 | Msa0865450 | 0.804023 | 2.635199e-49 | -8.615850e-47 |
| Msa0454560 | Msa0865450 | 0.806030 | 1.002743e-49 | -8.615850e-47 |
| Msa0467170 | Msa0865450 | 0.810364 | 1.195773e-50 | -8.615850e-47 |
| Msa0467330 | Msa0865450 | 0.823143 | 1.623244e-53 | -8.615850e-47 |
| Msa0249850 | Msa0865450 | 0.811376 | 7.221307e-51 | -8.615850e-47 |
| Msa0256540 | Msa0865450 | 0.800005 | 1.765616e-48 | -8.615850e-47 |
| Msa0269210 | Msa0865450 | 0.821262 | 4.433974e-53 | -8.615850e-47 |
| Msa0288620 | Msa0865450 | 0.810141 | 1.335784e-50 | -8.615850e-47 |
| Msa0313900 | Msa0865450 | 0.814117 | 1.813942e-51 | -8.615850e-47 |
| Msa0320600 | Msa0865450 | 0.817617 | 3.005814e-52 | -8.615850e-47 |
| Msa0326710 | Msa0865450 | 0.830127 | 3.498139e-55 | -8.615850e-47 |
| Msa0333610 | Msa0865450 | 0.817868 | 2.637574e-52 | -8.615850e-47 |
| Msa0354840 | Msa0865450 | 0.805550 | 1.264435e-49 | -8.615850e-47 |
| Msa0502510 | Msa0865450 | 0.825071 | 5.725525e-54 | -8.615850e-47 |
| Msa0545920 | Msa0865450 | 0.804890 | 1.738185e-49 | -8.615850e-47 |
| Msa0567610 | Msa0865450 | 0.808768 | 2.633531e-50 | -8.615850e-47 |
| Msa0574900 | Msa0865450 | 0.811231 | 7.765365e-51 | -8.615850e-47 |
| Msa0579070 | Msa0865450 | -0.829521 | 4.913358e-55 | -8.615850e-47 |
| Msa0601720 | Msa0865450 | 0.808160 | 3.549373e-50 | -8.615850e-47 |
| Msa0842750 | Msa0865450 | 0.804153 | 2.476596e-49 | -8.615850e-47 |
| Msa0865420 | Msa0865450 | 0.870389 | 1.514665e-66 | -8.615850e-47 |
| Msa0865450 | Msa0882780 | 0.802040 | 6.773971e-49 | -8.615850e-47 |
| Msa0865450 | Msa0945030 | 0.841397 | 4.871989e-58 | -8.615850e-47 |
| Msa0865450 | Msa1013190 | 0.811142 | 8.116158e-51 | -8.615850e-47 |
| Msa0865450 | Msa1029820 | 0.800189 | 1.619362e-48 | -8.615850e-47 |
| Msa0865450 | Msa1044250 | 0.804692 | 1.911954e-49 | -8.615850e-47 |
| Msa0865450 | Msa1045280 | 0.811108 | 8.255608e-51 | -8.615850e-47 |
| Msa0865450 | Msa1068710 | 0.813796 | 2.135356e-51 | -8.615850e-47 |
| Msa0865450 | Msa1068940 | 0.818268 | 2.142272e-52 | -8.615850e-47 |
| Msa0865450 | Msa1082410 | 0.845690 | 3.469815e-59 | -8.615850e-47 |
| Msa0865450 | Msa1106590 | 0.846159 | 2.587426e-59 | -8.615850e-47 |
| Msa0865450 | Msa1115740 | 0.811131 | 8.162381e-51 | -8.615850e-47 |
| Msa0865450 | Msa1149910 | 0.804043 | 2.610794e-49 | -8.615850e-47 |
| Msa0865450 | Msa1156710 | 0.809463 | 1.869320e-50 | -8.615850e-47 |
| Msa0865450 | Msa1158600 | -0.802160 | 6.400585e-49 | -8.615850e-47 |
| Msa0865450 | Msa1173250 | 0.801417 | 9.091580e-49 | -8.615850e-47 |
| Msa0865450 | Msa1257570 | 0.809184 | 2.144842e-50 | -8.615850e-47 |
| Msa0865450 | Msa1290380 | 0.807293 | 5.426670e-50 | -8.615850e-47 |
| Msa0865450 | Msa1290440 | 0.813046 | 3.121065e-51 | -8.615850e-47 |
| Msa0865450 | Msa1365820 | 0.862475 | 4.938097e-64 | -8.615850e-47 |
| Msa0865450 | Msa1366150 | 0.816256 | 6.072932e-52 | -8.615850e-47 |
| Msa0865450 | Msa1368390 | 0.845049 | 5.175569e-59 | -8.615850e-47 |
| Msa0865450 | Msa1384150 | 0.808499 | 3.005840e-50 | -8.615850e-47 |
| Msa0865450 | Msa1387440 | 0.812565 | 3.977752e-51 | -8.615850e-47 |
| Msa0865450 | Msa1391500 | 0.817134 | 3.860735e-52 | -8.615850e-47 |
| Msa0865450 | Msa1398810 | 0.842945 | 1.896903e-58 | -8.615850e-47 |
| Msa0865450 | Msa1405830 | 0.815607 | 8.478214e-52 | -8.615850e-47 |
| Msa0865450 | Msa1407840 | 0.847214 | 1.332368e-59 | -8.615850e-47 |
| Msa0865450 | Msa1413130 | 0.805699 | 1.176881e-49 | -8.615850e-47 |
| Msa0865450 | Msa1429070 | 0.807249 | 5.544154e-50 | -8.615850e-47 |
| Msa0865450 | Msa1436620 | 0.820142 | 8.018830e-53 | -8.615850e-47 |
| Msa0865450 | Msa1437810 | 0.845616 | 3.633817e-59 | -8.615850e-47 |
| Msa0865450 | Msa1447100 | 0.800596 | 1.338428e-48 | -8.615850e-47 |
| Msa0865450 | Msa1454500 | 0.844468 | 7.422229e-59 | -8.615850e-47 |
| Msa0865450 | Msa1457770 | 0.821383 | 4.156495e-53 | -8.615850e-47 |
| Msa0865450 | Msa1461370 | 0.808928 | 2.434128e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865450 | MtrunA17_Chr7g0263231 | 30.015 | 673 | 400 | 17 | 40 | 659 | 415 | 1069 | 1.32e-94 | 315 |
| Msa0865450 | MtrunA17_Chr2g0308821 | 29.925 | 665 | 393 | 16 | 59 | 659 | 4 | 659 | 2.03e-93 | 303 |
| Msa0865450 | MtrunA17_Chr7g0263261 | 29.971 | 684 | 390 | 17 | 34 | 659 | 358 | 1010 | 5.83e-89 | 299 |
| Msa0865450 | MtrunA17_Chr8g0359341 | 28.781 | 681 | 404 | 18 | 58 | 674 | 59 | 722 | 2.66e-87 | 288 |
| Msa0865450 | MtrunA17_Chr2g0333261 | 28.968 | 649 | 390 | 18 | 69 | 658 | 42 | 678 | 2.94e-82 | 274 |
| Msa0865450 | MtrunA17_Chr4g0003151 | 26.222 | 675 | 424 | 15 | 55 | 669 | 13 | 673 | 5.02e-79 | 265 |
| Msa0865450 | MtrunA17_Chr8g0383211 | 26.261 | 674 | 390 | 12 | 50 | 658 | 4 | 635 | 2.52e-78 | 263 |
| Msa0865450 | MtrunA17_Chr8g0354631 | 28.902 | 692 | 409 | 23 | 33 | 659 | 30 | 703 | 9.57e-78 | 263 |
| Msa0865450 | MtrunA17_Chr5g0402891 | 30.862 | 580 | 336 | 16 | 134 | 659 | 11 | 579 | 3.95e-77 | 259 |
| Msa0865450 | MtrunA17_Chr4g0052681 | 31.103 | 553 | 306 | 18 | 160 | 658 | 27 | 558 | 1.68e-70 | 240 |
| Msa0865450 | MtrunA17_Chr8g0383041 | 30.346 | 491 | 287 | 12 | 210 | 658 | 78 | 555 | 3.60e-68 | 234 |
| Msa0865450 | MtrunA17_Chr8g0383081 | 28.437 | 531 | 331 | 11 | 166 | 658 | 31 | 550 | 1.19e-65 | 226 |
| Msa0865450 | MtrunA17_Chr8g0383071 | 34.875 | 281 | 144 | 6 | 225 | 470 | 34 | 310 | 6.60e-48 | 171 |
| Msa0865450 | MtrunA17_Chr4g0052601 | 29.782 | 413 | 226 | 15 | 68 | 437 | 33 | 424 | 1.41e-43 | 162 |
| Msa0865450 | MtrunA17_Chr4g0062411 | 24.499 | 649 | 415 | 17 | 65 | 676 | 55 | 665 | 3.13e-39 | 154 |
| Msa0865450 | MtrunA17_Chr4g0053391 | 32.353 | 272 | 146 | 6 | 406 | 664 | 1 | 247 | 2.87e-37 | 140 |
| Msa0865450 | MtrunA17_Chr4g0052611 | 35.981 | 214 | 114 | 6 | 453 | 660 | 9 | 205 | 1.39e-30 | 120 |
| Msa0865450 | MtrunA17_Chr5g0408131 | 34.483 | 203 | 126 | 2 | 456 | 658 | 23 | 218 | 1.66e-30 | 120 |
| Msa0865450 | MtrunA17_Chr1g0192041 | 33.333 | 180 | 111 | 3 | 349 | 522 | 48 | 224 | 1.61e-29 | 117 |
| Msa0865450 | MtrunA17_Chr8g0383051 | 28.826 | 281 | 159 | 8 | 166 | 410 | 46 | 321 | 5.97e-26 | 109 |
| Msa0865450 | MtrunA17_Chr8g0383181 | 27.869 | 244 | 148 | 6 | 67 | 306 | 22 | 241 | 6.53e-23 | 100 |
| Msa0865450 | MtrunA17_Chr8g0383061 | 30.435 | 207 | 130 | 6 | 456 | 658 | 1 | 197 | 3.48e-19 | 87.4 |
| Msa0865450 | MtrunA17_Chr8g0390371 | 45.205 | 73 | 37 | 1 | 592 | 664 | 11 | 80 | 2.13e-13 | 66.2 |
| Msa0865450 | MtrunA17_Chr8g0383171 | 26.816 | 179 | 118 | 5 | 483 | 658 | 63 | 231 | 5.46e-13 | 69.7 |
| Msa0865450 | MtrunA17_Chr3g0108001 | 42.466 | 73 | 39 | 1 | 592 | 664 | 7 | 76 | 5.68e-13 | 65.9 |
| Msa0865450 | MtrunA17_Chr1g0162951 | 45.000 | 60 | 30 | 1 | 611 | 670 | 1 | 57 | 1.67e-11 | 60.1 |
| Msa0865450 | MtrunA17_Chr5g0440991 | 29.032 | 124 | 79 | 3 | 370 | 484 | 1 | 124 | 2.96e-11 | 61.6 |
| Msa0865450 | MtrunA17_Chr8g0383091 | 27.703 | 148 | 99 | 4 | 456 | 601 | 1 | 142 | 4.77e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865450 | AT3G42170.2 | 28.661 | 635 | 387 | 14 | 67 | 658 | 41 | 652 | 7.93e-89 | 291 |
| Msa0865450 | AT3G42170.1 | 28.661 | 635 | 387 | 14 | 67 | 658 | 63 | 674 | 1.05e-88 | 292 |
| Msa0865450 | AT1G18560.1 | 25.152 | 656 | 407 | 20 | 67 | 676 | 48 | 665 | 3.46e-34 | 139 |
Find 151 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTTGAAGAGACATTTA+AGG | 0.168338 | 5_4:+66155270 | Msa0865450:CDS |
| CATAAATTATATAAAGTTAA+AGG | 0.209633 | 5_4:-66157908 | None:intergenic |
| TCTGTTACAAATATAATTTC+TGG | 0.238190 | 5_4:+66156281 | Msa0865450:CDS |
| TTTGCTTGACCACGGATTTA+TGG | 0.240127 | 5_4:+66155630 | Msa0865450:CDS |
| GAAAGAAAACTTCTCCAGTT+TGG | 0.243752 | 5_4:+66155150 | Msa0865450:CDS |
| TCTTCCTCAACAATACTAAA+TGG | 0.270419 | 5_4:-66155470 | None:intergenic |
| GCTGCTGCTCCGTCTGTTGC+GGG | 0.276350 | 5_4:+66153515 | Msa0865450:five_prime_UTR |
| TCATCTCCGGGGTAAATTAA+AGG | 0.288608 | 5_4:-66156521 | None:intergenic |
| CTTCAAAGAAGTGAAGTTAA+AGG | 0.299486 | 5_4:+66155178 | Msa0865450:CDS |
| TATGTCCCTTGCTTCTGTTT+TGG | 0.319533 | 5_4:+66156460 | Msa0865450:CDS |
| ATGATTGATGAGAAGCTTTC+CGG | 0.328359 | 5_4:+66155362 | Msa0865450:CDS |
| GACCACCCTGTGTCTCTTGT+TGG | 0.332360 | 5_4:-66156677 | None:intergenic |
| AGGGGAGAGCAATTGGAGTT+TGG | 0.335928 | 5_4:+66157788 | Msa0865450:three_prime_UTR |
| TCACTTGTTGTTGGAACAAC+AGG | 0.341153 | 5_4:-66153437 | None:intergenic |
| TTTGTTCATGTTCCTCCTCC+TGG | 0.341927 | 5_4:+66155740 | Msa0865450:CDS |
| AAAGAAAACTTCTCCAGTTT+GGG | 0.345891 | 5_4:+66155151 | Msa0865450:CDS |
| CCATTTCATTGATGCTGATT+GGG | 0.352176 | 5_4:+66155694 | Msa0865450:CDS |
| AAATCAAAAGATAGAATATA+TGG | 0.355539 | 5_4:+66155661 | Msa0865450:CDS |
| GCCATTTCATTGATGCTGAT+TGG | 0.359357 | 5_4:+66155693 | Msa0865450:CDS |
| TGACCTAATCGAGTTTGTTT+TGG | 0.360190 | 5_4:+66153865 | Msa0865450:five_prime_UTR |
| TCTGAAGCCACAGTAGATAT+TGG | 0.367386 | 5_4:-66156893 | None:intergenic |
| CTCTTCCAGATGAAGATGAT+TGG | 0.371453 | 5_4:+66156216 | Msa0865450:CDS |
| AAGCCCTCTTCTCCATCATT+TGG | 0.374987 | 5_4:-66154990 | None:intergenic |
| AGAAGGATGAGGTTATTGTT+AGG | 0.376741 | 5_4:+66153639 | Msa0865450:five_prime_UTR |
| TTATCTGAACGATTCAATCT+TGG | 0.385657 | 5_4:+66153893 | Msa0865450:five_prime_UTR |
| AGAGTATGCTGATATGCTTC+AGG | 0.386838 | 5_4:+66156595 | Msa0865450:CDS |
| TTGCTTGTCTAAGATGGTAT+TGG | 0.387214 | 5_4:+66155963 | Msa0865450:intron |
| CTTTAATTTGTGGTGGTGAT+TGG | 0.392374 | 5_4:+66156987 | Msa0865450:CDS |
| TAACCAAAACAAACTCGATT+AGG | 0.395311 | 5_4:-66153868 | None:intergenic |
| ATAGAATATATGGTGCTAAC+TGG | 0.395733 | 5_4:+66155671 | Msa0865450:CDS |
| CCCTTAAATGTCTCTTCAAA+TGG | 0.398206 | 5_4:-66155271 | None:intergenic |
| GGTGTTCTTGATATCTTTGA+TGG | 0.400107 | 5_4:+66153668 | Msa0865450:five_prime_UTR |
| CTTTAAATGTCTCAAAGAAT+GGG | 0.401248 | 5_4:+66155790 | Msa0865450:CDS |
| TCTTTAAATGTCTCAAAGAA+TGG | 0.404654 | 5_4:+66155789 | Msa0865450:CDS |
| ATGAGTAAATATTAAGTTGA+AGG | 0.409203 | 5_4:+66157729 | Msa0865450:three_prime_UTR |
| GTCTTGAAGGGGAGAGCAAT+TGG | 0.409399 | 5_4:+66157781 | Msa0865450:three_prime_UTR |
| CCCAATCAGCATCAATGAAA+TGG | 0.414858 | 5_4:-66155694 | None:intergenic |
| TCTTTGAAGTGATCCCAAAC+TGG | 0.416027 | 5_4:-66155164 | None:intergenic |
| TAGTACGTCAATTGAATCAT+TGG | 0.416517 | 5_4:+66154956 | Msa0865450:CDS |
| CCATTTGAAGAGACATTTAA+GGG | 0.423793 | 5_4:+66155271 | Msa0865450:CDS |
| AGCAAGATTACGAACATTCT+CGG | 0.424413 | 5_4:+66156046 | Msa0865450:CDS |
| ACATTTAAGGGAAGTATGTC+AGG | 0.427916 | 5_4:+66155283 | Msa0865450:CDS |
| GACATATGACCATTATCGTT+AGG | 0.427964 | 5_4:-66156788 | None:intergenic |
| ACTTACAACCCTAACGATAA+TGG | 0.429827 | 5_4:+66156779 | Msa0865450:CDS |
| ACGAGAAGCCACTGCACATT+GGG | 0.435944 | 5_4:+66155430 | Msa0865450:CDS |
| TTTAGTATTGTTGAGGAAGA+AGG | 0.438752 | 5_4:+66155473 | Msa0865450:CDS |
| TCGAGCATTTCACTTGTTGT+TGG | 0.442853 | 5_4:-66153446 | None:intergenic |
| CCACCATTCCAAGGCACAAA+AGG | 0.447229 | 5_4:-66156810 | None:intergenic |
| TCTTCCAGATGAAGATGATT+GGG | 0.455559 | 5_4:+66156217 | Msa0865450:CDS |
| GGACCCTAGGATCAAAATGA+TGG | 0.456567 | 5_4:+66156481 | Msa0865450:CDS |
| TGCTGCTGCTCCGTCTGTTG+CGG | 0.460459 | 5_4:+66153514 | Msa0865450:five_prime_UTR |
| ATATAGAGTATTATCTCATA+TGG | 0.462323 | 5_4:+66156850 | Msa0865450:CDS |
| CAACGATGCTGTTATTCAAA+AGG | 0.462531 | 5_4:+66155121 | Msa0865450:CDS |
| AATTATTCTGTTGTTGCAAG+TGG | 0.466913 | 5_4:+66155239 | Msa0865450:CDS |
| GGTGTTGCTTCATTTGTTAG+TGG | 0.469430 | 5_4:-66155062 | None:intergenic |
| TCTGGAAGAGTTGTATAACT+TGG | 0.473625 | 5_4:-66156203 | None:intergenic |
| CTTACAGTAACAGGTCTCTC+AGG | 0.475890 | 5_4:-66153722 | None:intergenic |
| GCAAGATATAAATTAGAAGT+TGG | 0.480417 | 5_4:-66156314 | None:intergenic |
| GCAACACCGGAAAATGAAGT+TGG | 0.483664 | 5_4:+66155077 | Msa0865450:CDS |
| TGAGAATGATCCTTCGTTGA+CGG | 0.484846 | 5_4:+66153565 | Msa0865450:five_prime_UTR |
| ACATATGACCATTATCGTTA+GGG | 0.488004 | 5_4:-66156787 | None:intergenic |
| CTCAGGCAACTGCATACAAA+AGG | 0.493682 | 5_4:-66153705 | None:intergenic |
| TTATTCCCTTGATGTTAAGT+AGG | 0.495461 | 5_4:+66157157 | Msa0865450:exon |
| GAGGTTATTGTTAGGAGAAG+TGG | 0.495866 | 5_4:+66153647 | Msa0865450:five_prime_UTR |
| TTCTTGATTGCCCTACTCGT+TGG | 0.497369 | 5_4:+66156108 | Msa0865450:CDS |
| TCACTTGGTTGAGCACAATC+AGG | 0.500895 | 5_4:-66153479 | None:intergenic |
| CAACAAGTGAAATGCTCGAT+TGG | 0.502883 | 5_4:+66153450 | Msa0865450:five_prime_UTR |
| AGACATGGCAAATGCGATGA+AGG | 0.505997 | 5_4:+66156400 | Msa0865450:CDS |
| ACCGTTGAAACTTTAATTTG+TGG | 0.507663 | 5_4:+66156977 | Msa0865450:CDS |
| AACGTACCTACTTAACATCA+AGG | 0.512693 | 5_4:-66157163 | None:intergenic |
| AACATGCCATGGTGCTGTGC+AGG | 0.512754 | 5_4:-66153405 | None:intergenic |
| TGGATTCATAAGTAGTGGTC+CGG | 0.516119 | 5_4:-66155381 | None:intergenic |
| CTTCAGGAGCATAGAGAAGA+TGG | 0.516761 | 5_4:+66156611 | Msa0865450:CDS |
| TGAAGTGTTTCGGTTTCTGA+TGG | 0.520576 | 5_4:-66153374 | None:intergenic |
| CTGCTGCTCCGTCTGTTGCG+GGG | 0.521108 | 5_4:+66153516 | Msa0865450:five_prime_UTR |
| AGTACGTCAATTGAATCATT+GGG | 0.521505 | 5_4:+66154957 | Msa0865450:CDS |
| TTCTAATTTATATCTTGCTG+AGG | 0.525402 | 5_4:+66156319 | Msa0865450:CDS |
| CAACACCGGAAAATGAAGTT+GGG | 0.527758 | 5_4:+66155078 | Msa0865450:CDS |
| GGGAATAATGTGATTTCTGT+CGG | 0.531032 | 5_4:-66157142 | None:intergenic |
| AAATAAAATATTTAGTGTGT+CGG | 0.531663 | 5_4:+66155820 | Msa0865450:CDS |
| GTCTATTATATGCATGCTTG+TGG | 0.533217 | 5_4:+66157930 | Msa0865450:three_prime_UTR |
| CATGTTCCTCCTCCTGGACG+TGG | 0.534347 | 5_4:+66155746 | Msa0865450:CDS |
| AACTGACAACATTTGATACA+TGG | 0.534684 | 5_4:-66156135 | None:intergenic |
| TAAAATATTTAGTGTGTCGG+TGG | 0.536956 | 5_4:+66155823 | Msa0865450:CDS |
| ACCACAAATTAAAGTTTCAA+CGG | 0.539404 | 5_4:-66156978 | None:intergenic |
| TGCTGCTCCGTCTGTTGCGG+GGG | 0.540490 | 5_4:+66153517 | Msa0865450:five_prime_UTR |
| TCATGATCATATGTAGCACT+TGG | 0.542404 | 5_4:-66155401 | None:intergenic |
| GAAGCATATCAGCATACTCT+AGG | 0.542630 | 5_4:-66156592 | None:intergenic |
| AAATATTAAGTTGAAGGCTG+TGG | 0.544022 | 5_4:+66157735 | Msa0865450:three_prime_UTR |
| GGAGGTTCATCACCAAATGA+TGG | 0.548483 | 5_4:+66154978 | Msa0865450:CDS |
| ATTGGCTTCGAGTATTGCAT+GGG | 0.548627 | 5_4:+66157005 | Msa0865450:CDS |
| ACATGGAGTTCCAACGAGTA+GGG | 0.548628 | 5_4:-66156118 | None:intergenic |
| GATTGGCTTCGAGTATTGCA+TGG | 0.550233 | 5_4:+66157004 | Msa0865450:CDS |
| TGCTTTCCTTTAATTTACCC+CGG | 0.550404 | 5_4:+66156515 | Msa0865450:CDS |
| TCGATCTTGAAAACGTGGAA+AGG | 0.551102 | 5_4:-66156177 | None:intergenic |
| ATTCAACTTCCACCATTCCA+AGG | 0.551929 | 5_4:-66156819 | None:intergenic |
| CGTCAGCGTCACAAGGAAGA+TGG | 0.556935 | 5_4:-66153325 | None:intergenic |
| ATAGTTCGACAACTAAAGCT+TGG | 0.560720 | 5_4:+66156071 | Msa0865450:CDS |
| AAAGAAGTGAAGTTAAAGGA+TGG | 0.565368 | 5_4:+66155182 | Msa0865450:CDS |
| GAATGGTGGAAGTTGAATAA+CGG | 0.565459 | 5_4:+66156824 | Msa0865450:CDS |
| TTCTCTTCCTCCGTCAACGA+AGG | 0.565587 | 5_4:-66153575 | None:intergenic |
| GCAATATCAACACCACGTCC+AGG | 0.566147 | 5_4:-66155758 | None:intergenic |
| AACGAGAAGCCACTGCACAT+TGG | 0.572418 | 5_4:+66155429 | Msa0865450:CDS |
| TCACCAAATGATGGAGAAGA+GGG | 0.573695 | 5_4:+66154987 | Msa0865450:CDS |
| ATCTTTGAAAGAGAAGGATG+AGG | 0.574241 | 5_4:+66153628 | Msa0865450:five_prime_UTR |
| AAATAAGATTTGCTTGACCA+CGG | 0.577624 | 5_4:+66155622 | Msa0865450:CDS |
| TGACGCTGACGGTGTATGCA+TGG | 0.578180 | 5_4:+66153337 | Msa0865450:five_prime_UTR |
| GTTGGAACAACAGGGAGACA+TGG | 0.578356 | 5_4:-66153428 | None:intergenic |
| TGGTGGATCTTTGAAAGAGA+AGG | 0.582483 | 5_4:+66153622 | Msa0865450:five_prime_UTR |
| TTATCGTTAGGGTTGTAAGT+TGG | 0.583804 | 5_4:-66156776 | None:intergenic |
| CATCTTCCTTGTGACGCTGA+CGG | 0.585310 | 5_4:+66153326 | Msa0865450:five_prime_UTR |
| GTTCGACAACTAAAGCTTGG+TGG | 0.587329 | 5_4:+66156074 | Msa0865450:CDS |
| ATCACCAAATGATGGAGAAG+AGG | 0.588933 | 5_4:+66154986 | Msa0865450:CDS |
| TTTCATATGAGAAAATTAGT+CGG | 0.590543 | 5_4:+66155525 | Msa0865450:CDS |
| GACCCTAGGATCAAAATGAT+GGG | 0.591637 | 5_4:+66156482 | Msa0865450:CDS |
| ACATCCATTTAGTATTGTTG+AGG | 0.596544 | 5_4:+66155466 | Msa0865450:CDS |
| GCACTTGGATTCATAAGTAG+TGG | 0.598264 | 5_4:-66155386 | None:intergenic |
| AGAAGTTAAAGTCAACTTTG+AGG | 0.600517 | 5_4:+66155594 | Msa0865450:CDS |
| TCAACACCACGTCCAGGAGG+AGG | 0.600852 | 5_4:-66155752 | None:intergenic |
| TTGTGACTTCCATAAATCCG+TGG | 0.602894 | 5_4:-66155639 | None:intergenic |
| ATTCTCAATAGCGCGAATAG+CGG | 0.603171 | 5_4:-66153549 | None:intergenic |
| AGGGTCCAAAACAGAAGCAA+GGG | 0.604905 | 5_4:-66156465 | None:intergenic |
| TAGAAGAATGTAGAGAAGCT+CGG | 0.609825 | 5_4:-66156955 | None:intergenic |
| AAAAGTTTGCAAGCTGCTAG+AGG | 0.611700 | 5_4:+66156250 | Msa0865450:CDS |
| GCAGCAGCAACAACATCACT+TGG | 0.612364 | 5_4:-66153494 | None:intergenic |
| GTTGAAGGCTGTGGCAAATG+TGG | 0.614214 | 5_4:+66157744 | Msa0865450:three_prime_UTR |
| TTGGAGCCAACAAGAGACAC+AGG | 0.615353 | 5_4:+66156671 | Msa0865450:CDS |
| TAGGGTCCAAAACAGAAGCA+AGG | 0.615539 | 5_4:-66156466 | None:intergenic |
| GGGAGACATGGAACATGCCA+TGG | 0.619691 | 5_4:-66153416 | None:intergenic |
| ACGTACCTACTTAACATCAA+GGG | 0.621396 | 5_4:-66157162 | None:intergenic |
| CACTTGTTGTTGGAACAACA+GGG | 0.621855 | 5_4:-66153436 | None:intergenic |
| GAATGATCCTTCGTTGACGG+AGG | 0.625010 | 5_4:+66153568 | Msa0865450:five_prime_UTR |
| AGCTATTCCAATATCTACTG+TGG | 0.625240 | 5_4:+66156886 | Msa0865450:CDS |
| TTTAAATGTCTCAAAGAATG+GGG | 0.629030 | 5_4:+66155791 | Msa0865450:CDS |
| CATCATAACCCAATGTGCAG+TGG | 0.633413 | 5_4:-66155438 | None:intergenic |
| GTTGAAACTTTAATTTGTGG+TGG | 0.639553 | 5_4:+66156980 | Msa0865450:CDS |
| AAGAAACGTCAAGAGTTACA+TGG | 0.640610 | 5_4:+66153602 | Msa0865450:five_prime_UTR |
| GGTGTTTCAAATCAAGCAAG+TGG | 0.641921 | 5_4:+66156340 | Msa0865450:CDS |
| ACTAACAAATGAAGCAACAC+CGG | 0.649014 | 5_4:+66155064 | Msa0865450:CDS |
| TGATCAAAATGAGCTGACAT+TGG | 0.652396 | 5_4:+66156652 | Msa0865450:CDS |
| ACGTCAATTGAATCATTGGG+AGG | 0.653810 | 5_4:+66154960 | Msa0865450:CDS |
| TACATGGAGTTCCAACGAGT+AGG | 0.657696 | 5_4:-66156119 | None:intergenic |
| TTGCTGTCTATGAATCTGAA+AGG | 0.661595 | 5_4:+66155570 | Msa0865450:CDS |
| GGTTCTCGATCTTGAAAACG+TGG | 0.664593 | 5_4:-66156182 | None:intergenic |
| GCAAAACCTGCACAGCACCA+TGG | 0.665753 | 5_4:+66153399 | Msa0865450:five_prime_UTR |
| GTCTAACTTCATGAAAGACA+TGG | 0.678953 | 5_4:+66156385 | Msa0865450:CDS |
| CATACACCGTCAGCGTCACA+AGG | 0.681538 | 5_4:-66153332 | None:intergenic |
| AAACGTCAAGAGTTACATGG+TGG | 0.708724 | 5_4:+66153605 | Msa0865450:five_prime_UTR |
| TGGAGCCAACAAGAGACACA+GGG | 0.732152 | 5_4:+66156672 | Msa0865450:CDS |
| ATATCAACACCACGTCCAGG+AGG | 0.742793 | 5_4:-66155755 | None:intergenic |
| AGCCAACAAGAGACACAGGG+TGG | 0.786904 | 5_4:+66156675 | Msa0865450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATCTAAAAAAACAAAAA+GGG | - | chr5_4:66153758-66153777 | None:intergenic | 10.0% |
| !! | TAAAAAATCAAAAAACTTTA+CGG | - | chr5_4:66154925-66154944 | None:intergenic | 10.0% |
| !! | CATAAATTATATAAAGTTAA+AGG | - | chr5_4:66157911-66157930 | None:intergenic | 10.0% |
| !! | GTAAATCTAAAAAAACAAAA+AGG | - | chr5_4:66153759-66153778 | None:intergenic | 15.0% |
| !!! | TAAAAAAAGTTAGAAACTTT+TGG | + | chr5_4:66154054-66154073 | Msa0865450:intron | 15.0% |
| !!! | AAAAAAAGTTAGAAACTTTT+GGG | + | chr5_4:66154055-66154074 | Msa0865450:intron | 15.0% |
| !!! | TACTTGTTTAATTGATTTAT+AGG | + | chr5_4:66154588-66154607 | Msa0865450:intron | 15.0% |
| !!! | ACTTGTTTAATTGATTTATA+GGG | + | chr5_4:66154589-66154608 | Msa0865450:intron | 15.0% |
| !!! | TGAAACTTTTTTAATGATAA+AGG | - | chr5_4:66154638-66154657 | None:intergenic | 15.0% |
| !! | AAATCAAAAGATAGAATATA+TGG | + | chr5_4:66155661-66155680 | Msa0865450:CDS | 15.0% |
| !! | AAATAAAATATTTAGTGTGT+CGG | + | chr5_4:66155820-66155839 | Msa0865450:CDS | 15.0% |
| !! | AAGAGAAAATATATTACTTT+AGG | - | chr5_4:66157043-66157062 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTATTAATAGG+TGG | + | chr5_4:66157111-66157130 | Msa0865450:intron | 15.0% |
| !! | ATCAATAAACAACTTAATAA+AGG | - | chr5_4:66157609-66157628 | None:intergenic | 15.0% |
| !!! | AGTGATTTAGAGTATAATTT+AGG | + | chr5_4:66154448-66154467 | Msa0865450:intron | 20.0% |
| !!! | ATTTAGAGTATAATTTAGGT+TGG | + | chr5_4:66154452-66154471 | Msa0865450:intron | 20.0% |
| !! | TTTATAGGGTATATATACAA+TGG | + | chr5_4:66154603-66154622 | Msa0865450:intron | 20.0% |
| !! | TTATAGGGTATATATACAAT+GGG | + | chr5_4:66154604-66154623 | Msa0865450:intron | 20.0% |
| !! | TTTAAACAAATCATACTTGT+AGG | + | chr5_4:66154818-66154837 | Msa0865450:intron | 20.0% |
| !! | TTAAACAAATCATACTTGTA+GGG | + | chr5_4:66154819-66154838 | Msa0865450:intron | 20.0% |
| !! | TTTCATATGAGAAAATTAGT+CGG | + | chr5_4:66155525-66155544 | Msa0865450:CDS | 20.0% |
| !! | TCTGTTACAAATATAATTTC+TGG | + | chr5_4:66156281-66156300 | Msa0865450:CDS | 20.0% |
| !! | AGCTAGAAAAAATATAGAAA+AGG | + | chr5_4:66156544-66156563 | Msa0865450:CDS | 20.0% |
| !!! | ATATAGAGTATTATCTCATA+TGG | + | chr5_4:66156850-66156869 | Msa0865450:CDS | 20.0% |
| !! | ATAAGAAAAAAAGATGCATT+GGG | + | chr5_4:66157288-66157307 | Msa0865450:intron | 20.0% |
| !!! | TAAAGATAGCATTTTTGTAT+TGG | + | chr5_4:66157413-66157432 | Msa0865450:intron | 20.0% |
| !!! | AAAGATAGCATTTTTGTATT+GGG | + | chr5_4:66157414-66157433 | Msa0865450:intron | 20.0% |
| !!! | ATGAGTAAATATTAAGTTGA+AGG | + | chr5_4:66157729-66157748 | Msa0865450:three_prime_UTR | 20.0% |
| ! | AAAAAAAAGCTTACAGTAAC+AGG | - | chr5_4:66153734-66153753 | None:intergenic | 25.0% |
| ! | ACTGAAGTGTGTTAAATATT+TGG | + | chr5_4:66153916-66153935 | Msa0865450:intron | 25.0% |
| !!! | TTAGTTTTTGGTAGATAGTT+GGG | - | chr5_4:66154184-66154203 | None:intergenic | 25.0% |
| ! | TGCAATATAATATGAAAGCA+CGG | + | chr5_4:66154740-66154759 | Msa0865450:intron | 25.0% |
| ! | AGTTAACCAAAAAAATTGAG+AGG | - | chr5_4:66154883-66154902 | None:intergenic | 25.0% |
| ! | TAAAGGATGGAACAAAAAAA+TGG | + | chr5_4:66155195-66155214 | Msa0865450:CDS | 25.0% |
| ! | TCTTTAAATGTCTCAAAGAA+TGG | + | chr5_4:66155789-66155808 | Msa0865450:CDS | 25.0% |
| ! | CTTTAAATGTCTCAAAGAAT+GGG | + | chr5_4:66155790-66155809 | Msa0865450:CDS | 25.0% |
| ! | TTTAAATGTCTCAAAGAATG+GGG | + | chr5_4:66155791-66155810 | Msa0865450:CDS | 25.0% |
| ! | GCAAGATATAAATTAGAAGT+TGG | - | chr5_4:66156317-66156336 | None:intergenic | 25.0% |
| ! | TTCTAATTTATATCTTGCTG+AGG | + | chr5_4:66156319-66156338 | Msa0865450:CDS | 25.0% |
| ! | AGGAAAAATTTGACAAGTAT+TGG | + | chr5_4:66156420-66156439 | Msa0865450:CDS | 25.0% |
| ! | ACCACAAATTAAAGTTTCAA+CGG | - | chr5_4:66156981-66157000 | None:intergenic | 25.0% |
| ! | GATAAGAAAAAAAGATGCAT+TGG | + | chr5_4:66157287-66157306 | Msa0865450:intron | 25.0% |
| ! | CAACTATGATATGACATTTA+CGG | + | chr5_4:66157514-66157533 | Msa0865450:intron | 25.0% |
| ! | AACTATGATATGACATTTAC+GGG | + | chr5_4:66157515-66157534 | Msa0865450:intron | 25.0% |
| !! | GCTAAAAGCATAACAAAAAA+AGG | - | chr5_4:66157572-66157591 | None:intergenic | 25.0% |
| !! | ATTGATATGTAGCATTTTTC+AGG | + | chr5_4:66157623-66157642 | Msa0865450:intron | 25.0% |
| !! | TGAATACAATTTTGTCTTGA+AGG | + | chr5_4:66157768-66157787 | Msa0865450:three_prime_UTR | 25.0% |
| !! | GAATACAATTTTGTCTTGAA+GGG | + | chr5_4:66157769-66157788 | Msa0865450:three_prime_UTR | 25.0% |
| !! | AATACAATTTTGTCTTGAAG+GGG | + | chr5_4:66157770-66157789 | Msa0865450:three_prime_UTR | 25.0% |
| TAACCAAAACAAACTCGATT+AGG | - | chr5_4:66153871-66153890 | None:intergenic | 30.0% | |
| !!! | TAATCGAGTTTGTTTTGGTT+AGG | + | chr5_4:66153870-66153889 | Msa0865450:five_prime_UTR | 30.0% |
| TTATCTGAACGATTCAATCT+TGG | + | chr5_4:66153893-66153912 | Msa0865450:five_prime_UTR | 30.0% | |
| ATGCTTCATAATCATTCTTG+CGG | - | chr5_4:66154083-66154102 | None:intergenic | 30.0% | |
| CAAGAATGATTATGAAGCAT+AGG | + | chr5_4:66154083-66154102 | Msa0865450:intron | 30.0% | |
| !!! | CTTAGTTTTTGGTAGATAGT+TGG | - | chr5_4:66154185-66154204 | None:intergenic | 30.0% |
| TAGAATTGAGAAGTAGCAAT+AGG | + | chr5_4:66154285-66154304 | Msa0865450:intron | 30.0% | |
| ! | GCAACAATTTTCTTCTTTGA+TGG | - | chr5_4:66154313-66154332 | None:intergenic | 30.0% |
| CTCAAATACCTTAAGAGAAA+TGG | - | chr5_4:66154339-66154358 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTCTCTCTTATTG+TGG | + | chr5_4:66154398-66154417 | Msa0865450:intron | 30.0% |
| ATTTCACTATCACTACTTTC+TGG | - | chr5_4:66154543-66154562 | None:intergenic | 30.0% | |
| ! | ATGAAAGCACGGTATATATA+CGG | + | chr5_4:66154751-66154770 | Msa0865450:intron | 30.0% |
| ! | TTTTCAATCAAAACTCCTGT+TGG | + | chr5_4:66154779-66154798 | Msa0865450:intron | 30.0% |
| CTTAAACATATTGAACCAAC+AGG | - | chr5_4:66154797-66154816 | None:intergenic | 30.0% | |
| TAGTACGTCAATTGAATCAT+TGG | + | chr5_4:66154956-66154975 | Msa0865450:CDS | 30.0% | |
| AGTACGTCAATTGAATCATT+GGG | + | chr5_4:66154957-66154976 | Msa0865450:CDS | 30.0% | |
| AAAGAAAACTTCTCCAGTTT+GGG | + | chr5_4:66155151-66155170 | Msa0865450:CDS | 30.0% | |
| CTTCAAAGAAGTGAAGTTAA+AGG | + | chr5_4:66155178-66155197 | Msa0865450:CDS | 30.0% | |
| AAAGAAGTGAAGTTAAAGGA+TGG | + | chr5_4:66155182-66155201 | Msa0865450:CDS | 30.0% | |
| AATTATTCTGTTGTTGCAAG+TGG | + | chr5_4:66155239-66155258 | Msa0865450:CDS | 30.0% | |
| CCATTTGAAGAGACATTTAA+GGG | + | chr5_4:66155271-66155290 | Msa0865450:CDS | 30.0% | |
| ACATCCATTTAGTATTGTTG+AGG | + | chr5_4:66155466-66155485 | Msa0865450:CDS | 30.0% | |
| TCTTCCTCAACAATACTAAA+TGG | - | chr5_4:66155473-66155492 | None:intergenic | 30.0% | |
| TTTAGTATTGTTGAGGAAGA+AGG | + | chr5_4:66155473-66155492 | Msa0865450:CDS | 30.0% | |
| AGAAGTTAAAGTCAACTTTG+AGG | + | chr5_4:66155594-66155613 | Msa0865450:CDS | 30.0% | |
| ! | AAATAAGATTTGCTTGACCA+CGG | + | chr5_4:66155622-66155641 | Msa0865450:CDS | 30.0% |
| ! | ATAGAATATATGGTGCTAAC+TGG | + | chr5_4:66155671-66155690 | Msa0865450:CDS | 30.0% |
| TAAAATATTTAGTGTGTCGG+TGG | + | chr5_4:66155823-66155842 | Msa0865450:CDS | 30.0% | |
| AGCTAAAAGTTCTACTTTCA+AGG | + | chr5_4:66155877-66155896 | Msa0865450:intron | 30.0% | |
| ! | TTCCATCCAACACTAATTTT+TGG | - | chr5_4:66155905-66155924 | None:intergenic | 30.0% |
| GACAAGCAAGTTTAGTATAT+GGG | - | chr5_4:66155952-66155971 | None:intergenic | 30.0% | |
| AGACAAGCAAGTTTAGTATA+TGG | - | chr5_4:66155953-66155972 | None:intergenic | 30.0% | |
| AACTGACAACATTTGATACA+TGG | - | chr5_4:66156138-66156157 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTAGCTTCATCTC+CGG | - | chr5_4:66156537-66156556 | None:intergenic | 30.0% |
| ACATATGACCATTATCGTTA+GGG | - | chr5_4:66156790-66156809 | None:intergenic | 30.0% | |
| !! | ACCGTTGAAACTTTAATTTG+TGG | + | chr5_4:66156977-66156996 | Msa0865450:CDS | 30.0% |
| !! | GTTGAAACTTTAATTTGTGG+TGG | + | chr5_4:66156980-66156999 | Msa0865450:CDS | 30.0% |
| ! | TTTTTATTAATAGGTGGAGC+AGG | + | chr5_4:66157117-66157136 | Msa0865450:intron | 30.0% |
| TTATTCCCTTGATGTTAAGT+AGG | + | chr5_4:66157157-66157176 | Msa0865450:exon | 30.0% | |
| AAATTGACAAGAACCTATTG+TGG | + | chr5_4:66157197-66157216 | Msa0865450:intron | 30.0% | |
| AGTGATATCAAATCCACAAT+AGG | - | chr5_4:66157213-66157232 | None:intergenic | 30.0% | |
| ! | AAGCTTTTGTGGATATATGT+TGG | + | chr5_4:66157390-66157409 | Msa0865450:intron | 30.0% |
| ! | CATGCTATATTTCTAATCAG+TGG | - | chr5_4:66157446-66157465 | None:intergenic | 30.0% |
| ATGTATGTTGAGTAAGCTTA+TGG | + | chr5_4:66157463-66157482 | Msa0865450:intron | 30.0% | |
| AAGCTTATGGAATCTTCATA+AGG | + | chr5_4:66157476-66157495 | Msa0865450:intron | 30.0% | |
| !! | AAATATTAAGTTGAAGGCTG+TGG | + | chr5_4:66157735-66157754 | Msa0865450:three_prime_UTR | 30.0% |
| ! | CTCAGCTAATTGAATTTTGT+TGG | + | chr5_4:66157838-66157857 | Msa0865450:three_prime_UTR | 30.0% |
| !! | GGTTTTGCAATGAAGTGTTT+CGG | - | chr5_4:66153387-66153406 | None:intergenic | 35.0% |
| AAGAAACGTCAAGAGTTACA+TGG | + | chr5_4:66153602-66153621 | Msa0865450:five_prime_UTR | 35.0% | |
| ! | ATCTTTGAAAGAGAAGGATG+AGG | + | chr5_4:66153628-66153647 | Msa0865450:five_prime_UTR | 35.0% |
| AGAAGGATGAGGTTATTGTT+AGG | + | chr5_4:66153639-66153658 | Msa0865450:five_prime_UTR | 35.0% | |
| GGTGTTCTTGATATCTTTGA+TGG | + | chr5_4:66153668-66153687 | Msa0865450:five_prime_UTR | 35.0% | |
| !! | TGACCTAATCGAGTTTGTTT+TGG | + | chr5_4:66153865-66153884 | Msa0865450:five_prime_UTR | 35.0% |
| GTGGGAATGTGAAAGATTAA+AGG | - | chr5_4:66154162-66154181 | None:intergenic | 35.0% | |
| !! | TTTTTGGTAGATAGTTGGGT+GGG | - | chr5_4:66154180-66154199 | None:intergenic | 35.0% |
| !! | AGAAGAGGATGCTTAGTTTT+TGG | - | chr5_4:66154196-66154215 | None:intergenic | 35.0% |
| ! | AGCATCCTCTTCTTTTTCTA+TGG | + | chr5_4:66154203-66154222 | Msa0865450:intron | 35.0% |
| ! | GCATCCTCTTCTTTTTCTAT+GGG | + | chr5_4:66154204-66154223 | Msa0865450:intron | 35.0% |
| CTCAAAAACCAAGCTTTCTA+CGG | + | chr5_4:66154252-66154271 | Msa0865450:intron | 35.0% | |
| GTTGGAGATTTCTGATTGTT+TGG | + | chr5_4:66154470-66154489 | Msa0865450:intron | 35.0% | |
| TAGTGAAATCATGAGCTTTC+TGG | + | chr5_4:66154554-66154573 | Msa0865450:intron | 35.0% | |
| AACAAATCATACTTGTAGGG+TGG | + | chr5_4:66154822-66154841 | Msa0865450:intron | 35.0% | |
| ! | AAAATTGAGAGGCACATCAA+TGG | - | chr5_4:66154872-66154891 | None:intergenic | 35.0% |
| !!! | GATGTGCCTCTCAATTTTTT+TGG | + | chr5_4:66154874-66154893 | Msa0865450:intron | 35.0% |
| ACTAACAAATGAAGCAACAC+CGG | + | chr5_4:66155064-66155083 | Msa0865450:CDS | 35.0% | |
| ! | TCTTTCCCAACTTCATTTTC+CGG | - | chr5_4:66155086-66155105 | None:intergenic | 35.0% |
| CAACGATGCTGTTATTCAAA+AGG | + | chr5_4:66155121-66155140 | Msa0865450:CDS | 35.0% | |
| GAAAGAAAACTTCTCCAGTT+TGG | + | chr5_4:66155150-66155169 | Msa0865450:CDS | 35.0% | |
| GCCATTTGAAGAGACATTTA+AGG | + | chr5_4:66155270-66155289 | Msa0865450:CDS | 35.0% | |
| CCCTTAAATGTCTCTTCAAA+TGG | - | chr5_4:66155274-66155293 | None:intergenic | 35.0% | |
| ! | ACATTTAAGGGAAGTATGTC+AGG | + | chr5_4:66155283-66155302 | Msa0865450:CDS | 35.0% |
| !! | TCATCAATCATGCTTTTTGC+TGG | - | chr5_4:66155353-66155372 | None:intergenic | 35.0% |
| ATGATTGATGAGAAGCTTTC+CGG | + | chr5_4:66155362-66155381 | Msa0865450:CDS | 35.0% | |
| TCATGATCATATGTAGCACT+TGG | - | chr5_4:66155404-66155423 | None:intergenic | 35.0% | |
| TTGCTGTCTATGAATCTGAA+AGG | + | chr5_4:66155570-66155589 | Msa0865450:CDS | 35.0% | |
| ! | CCATTTCATTGATGCTGATT+GGG | + | chr5_4:66155694-66155713 | Msa0865450:CDS | 35.0% |
| ! | AAGGCACCAAAAATTAGTGT+TGG | + | chr5_4:66155896-66155915 | Msa0865450:intron | 35.0% |
| ! | CACCAAAAATTAGTGTTGGA+TGG | + | chr5_4:66155900-66155919 | Msa0865450:intron | 35.0% |
| TTAGTATATGGGCACAACAA+CGG | - | chr5_4:66155941-66155960 | None:intergenic | 35.0% | |
| ! | CTAAACTTGCTTGTCTAAGA+TGG | + | chr5_4:66155957-66155976 | Msa0865450:intron | 35.0% |
| ! | TTGCTTGTCTAAGATGGTAT+TGG | + | chr5_4:66155963-66155982 | Msa0865450:intron | 35.0% |
| AGCAAGATTACGAACATTCT+CGG | + | chr5_4:66156046-66156065 | Msa0865450:CDS | 35.0% | |
| ATAGTTCGACAACTAAAGCT+TGG | + | chr5_4:66156071-66156090 | Msa0865450:CDS | 35.0% | |
| TCTGGAAGAGTTGTATAACT+TGG | - | chr5_4:66156206-66156225 | None:intergenic | 35.0% | |
| TCTTCCAGATGAAGATGATT+GGG | + | chr5_4:66156217-66156236 | Msa0865450:CDS | 35.0% | |
| ! | TTTTCCCAATCATCTTCATC+TGG | - | chr5_4:66156224-66156243 | None:intergenic | 35.0% |
| GTCTAACTTCATGAAAGACA+TGG | + | chr5_4:66156385-66156404 | Msa0865450:CDS | 35.0% | |
| ! | TGCTTTCCTTTAATTTACCC+CGG | + | chr5_4:66156515-66156534 | Msa0865450:CDS | 35.0% |
| !!! | TTTTTTCTAGCTTCATCTCC+GGG | - | chr5_4:66156536-66156555 | None:intergenic | 35.0% |
| TGATCAAAATGAGCTGACAT+TGG | + | chr5_4:66156652-66156671 | Msa0865450:CDS | 35.0% | |
| ! | TGAACTTCAGATTTTACAGC+AGG | - | chr5_4:66156740-66156759 | None:intergenic | 35.0% |
| TTATCGTTAGGGTTGTAAGT+TGG | - | chr5_4:66156779-66156798 | None:intergenic | 35.0% | |
| ACTTACAACCCTAACGATAA+TGG | + | chr5_4:66156779-66156798 | Msa0865450:CDS | 35.0% | |
| GACATATGACCATTATCGTT+AGG | - | chr5_4:66156791-66156810 | None:intergenic | 35.0% | |
| ! | GAATGGTGGAAGTTGAATAA+CGG | + | chr5_4:66156824-66156843 | Msa0865450:CDS | 35.0% |
| AGCTATTCCAATATCTACTG+TGG | + | chr5_4:66156886-66156905 | Msa0865450:CDS | 35.0% | |
| TAGAAGAATGTAGAGAAGCT+CGG | - | chr5_4:66156958-66156977 | None:intergenic | 35.0% | |
| !! | CTTTAATTTGTGGTGGTGAT+TGG | + | chr5_4:66156987-66157006 | Msa0865450:CDS | 35.0% |
| GGGAATAATGTGATTTCTGT+CGG | - | chr5_4:66157145-66157164 | None:intergenic | 35.0% | |
| ACGTACCTACTTAACATCAA+GGG | - | chr5_4:66157165-66157184 | None:intergenic | 35.0% | |
| AACGTACCTACTTAACATCA+AGG | - | chr5_4:66157166-66157185 | None:intergenic | 35.0% | |
| TCTCAGAAGTTCTTATCCAT+AGG | - | chr5_4:66157269-66157288 | None:intergenic | 35.0% | |
| !!! | AAGGATTTTTAGCATAGTCC+AGG | + | chr5_4:66157545-66157564 | Msa0865450:intron | 35.0% |
| AGCATAACAAAAAAAGGTCC+TGG | - | chr5_4:66157566-66157585 | None:intergenic | 35.0% | |
| CTGAAAAACAAACGAGAAAG+TGG | - | chr5_4:66157657-66157676 | None:intergenic | 35.0% | |
| ! | TGAAGTGTTTCGGTTTCTGA+TGG | - | chr5_4:66153377-66153396 | None:intergenic | 40.0% |
| !! | CACTTGTTGTTGGAACAACA+GGG | - | chr5_4:66153439-66153458 | None:intergenic | 40.0% |
| !! | TCACTTGTTGTTGGAACAAC+AGG | - | chr5_4:66153440-66153459 | None:intergenic | 40.0% |
| !! | TCGAGCATTTCACTTGTTGT+TGG | - | chr5_4:66153449-66153468 | None:intergenic | 40.0% |
| CAACAAGTGAAATGCTCGAT+TGG | + | chr5_4:66153450-66153469 | Msa0865450:five_prime_UTR | 40.0% | |
| ATTCTCAATAGCGCGAATAG+CGG | - | chr5_4:66153552-66153571 | None:intergenic | 40.0% | |
| TGAGAATGATCCTTCGTTGA+CGG | + | chr5_4:66153565-66153584 | Msa0865450:five_prime_UTR | 40.0% | |
| AAACGTCAAGAGTTACATGG+TGG | + | chr5_4:66153605-66153624 | Msa0865450:five_prime_UTR | 40.0% | |
| ! | TGGTGGATCTTTGAAAGAGA+AGG | + | chr5_4:66153622-66153641 | Msa0865450:five_prime_UTR | 40.0% |
| GAGGTTATTGTTAGGAGAAG+TGG | + | chr5_4:66153647-66153666 | Msa0865450:five_prime_UTR | 40.0% | |
| !!! | GTTTTTGGTAGATAGTTGGG+TGG | - | chr5_4:66154181-66154200 | None:intergenic | 40.0% |
| ! | TCCTCTTCTTTTTCTATGGG+TGG | + | chr5_4:66154207-66154226 | Msa0865450:intron | 40.0% |
| !! | AGCTTGGTTTTTGAGAGAAG+AGG | - | chr5_4:66154247-66154266 | None:intergenic | 40.0% |
| AAAAACCAAGCTTTCTACGG+TGG | + | chr5_4:66154255-66154274 | Msa0865450:intron | 40.0% | |
| GTTGCTCTCCATTTCTCTTA+AGG | + | chr5_4:66154328-66154347 | Msa0865450:intron | 40.0% | |
| CAAAATAATCAGCAGTACCC+AGG | - | chr5_4:66154849-66154868 | None:intergenic | 40.0% | |
| ACGTCAATTGAATCATTGGG+AGG | + | chr5_4:66154960-66154979 | Msa0865450:CDS | 40.0% | |
| ! | ATCACCAAATGATGGAGAAG+AGG | + | chr5_4:66154986-66155005 | Msa0865450:CDS | 40.0% |
| ! | TCACCAAATGATGGAGAAGA+GGG | + | chr5_4:66154987-66155006 | Msa0865450:CDS | 40.0% |
| !! | GGTGTTGCTTCATTTGTTAG+TGG | - | chr5_4:66155065-66155084 | None:intergenic | 40.0% |
| CAACACCGGAAAATGAAGTT+GGG | + | chr5_4:66155078-66155097 | Msa0865450:CDS | 40.0% | |
| !! | TCTTTGAAGTGATCCCAAAC+TGG | - | chr5_4:66155167-66155186 | None:intergenic | 40.0% |
| TGGATTCATAAGTAGTGGTC+CGG | - | chr5_4:66155384-66155403 | None:intergenic | 40.0% | |
| GCACTTGGATTCATAAGTAG+TGG | - | chr5_4:66155389-66155408 | None:intergenic | 40.0% | |
| TTTGCTTGACCACGGATTTA+TGG | + | chr5_4:66155630-66155649 | Msa0865450:CDS | 40.0% | |
| TTGTGACTTCCATAAATCCG+TGG | - | chr5_4:66155642-66155661 | None:intergenic | 40.0% | |
| GCCATTTCATTGATGCTGAT+TGG | + | chr5_4:66155693-66155712 | Msa0865450:CDS | 40.0% | |
| CCCAATCAGCATCAATGAAA+TGG | - | chr5_4:66155697-66155716 | None:intergenic | 40.0% | |
| ! | AAAAAGTGTGTGACAGTGTG+AGG | + | chr5_4:66156006-66156025 | Msa0865450:CDS | 40.0% |
| TCGATCTTGAAAACGTGGAA+AGG | - | chr5_4:66156180-66156199 | None:intergenic | 40.0% | |
| CTCTTCCAGATGAAGATGAT+TGG | + | chr5_4:66156216-66156235 | Msa0865450:CDS | 40.0% | |
| AAAAGTTTGCAAGCTGCTAG+AGG | + | chr5_4:66156250-66156269 | Msa0865450:CDS | 40.0% | |
| GGTGTTTCAAATCAAGCAAG+TGG | + | chr5_4:66156340-66156359 | Msa0865450:CDS | 40.0% | |
| ! | TATGTCCCTTGCTTCTGTTT+TGG | + | chr5_4:66156460-66156479 | Msa0865450:CDS | 40.0% |
| GACCCTAGGATCAAAATGAT+GGG | + | chr5_4:66156482-66156501 | Msa0865450:CDS | 40.0% | |
| !! | CTCCCATCATTTTGATCCTA+GGG | - | chr5_4:66156487-66156506 | None:intergenic | 40.0% |
| !! | ACTCCCATCATTTTGATCCT+AGG | - | chr5_4:66156488-66156507 | None:intergenic | 40.0% |
| TCATCTCCGGGGTAAATTAA+AGG | - | chr5_4:66156524-66156543 | None:intergenic | 40.0% | |
| !!! | TTTTTCTAGCTTCATCTCCG+GGG | - | chr5_4:66156535-66156554 | None:intergenic | 40.0% |
| GAAGCATATCAGCATACTCT+AGG | - | chr5_4:66156595-66156614 | None:intergenic | 40.0% | |
| AGAGTATGCTGATATGCTTC+AGG | + | chr5_4:66156595-66156614 | Msa0865450:CDS | 40.0% | |
| ! | TCATATGTCCTTTTGTGCCT+TGG | + | chr5_4:66156802-66156821 | Msa0865450:CDS | 40.0% |
| ATTCAACTTCCACCATTCCA+AGG | - | chr5_4:66156822-66156841 | None:intergenic | 40.0% | |
| ! | TCTGAAGCCACAGTAGATAT+TGG | - | chr5_4:66156896-66156915 | None:intergenic | 40.0% |
| ! | ATTGGCTTCGAGTATTGCAT+GGG | + | chr5_4:66157005-66157024 | Msa0865450:CDS | 40.0% |
| TGCTCATTGTTCTTGACCTA+TGG | + | chr5_4:66157250-66157269 | Msa0865450:intron | 40.0% | |
| ! | CTGTGATGCATAAGCTTTTG+TGG | + | chr5_4:66157379-66157398 | Msa0865450:intron | 40.0% |
| GACATTTACGGGCATGTATA+AGG | + | chr5_4:66157526-66157545 | Msa0865450:intron | 40.0% | |
| TCACTTGGTTGAGCACAATC+AGG | - | chr5_4:66153482-66153501 | None:intergenic | 45.0% | |
| CTCAGGCAACTGCATACAAA+AGG | - | chr5_4:66153708-66153727 | None:intergenic | 45.0% | |
| CTTACAGTAACAGGTCTCTC+AGG | - | chr5_4:66153725-66153744 | None:intergenic | 45.0% | |
| GCCACCCATAGAAAAAGAAG+AGG | - | chr5_4:66154211-66154230 | None:intergenic | 45.0% | |
| GTTATCCACCGTAGAAAGCT+TGG | - | chr5_4:66154263-66154282 | None:intergenic | 45.0% | |
| GGAGGTTCATCACCAAATGA+TGG | + | chr5_4:66154978-66154997 | Msa0865450:CDS | 45.0% | |
| AAGCCCTCTTCTCCATCATT+TGG | - | chr5_4:66154993-66155012 | None:intergenic | 45.0% | |
| GCAACACCGGAAAATGAAGT+TGG | + | chr5_4:66155077-66155096 | Msa0865450:CDS | 45.0% | |
| CATCATAACCCAATGTGCAG+TGG | - | chr5_4:66155441-66155460 | None:intergenic | 45.0% | |
| TTTGTTCATGTTCCTCCTCC+TGG | + | chr5_4:66155740-66155759 | Msa0865450:CDS | 45.0% | |
| GTTCGACAACTAAAGCTTGG+TGG | + | chr5_4:66156074-66156093 | Msa0865450:CDS | 45.0% | |
| TTCTTGATTGCCCTACTCGT+TGG | + | chr5_4:66156108-66156127 | Msa0865450:CDS | 45.0% | |
| ACATGGAGTTCCAACGAGTA+GGG | - | chr5_4:66156121-66156140 | None:intergenic | 45.0% | |
| TACATGGAGTTCCAACGAGT+AGG | - | chr5_4:66156122-66156141 | None:intergenic | 45.0% | |
| GGTTCTCGATCTTGAAAACG+TGG | - | chr5_4:66156185-66156204 | None:intergenic | 45.0% | |
| AGACATGGCAAATGCGATGA+AGG | + | chr5_4:66156400-66156419 | Msa0865450:CDS | 45.0% | |
| AGGGTCCAAAACAGAAGCAA+GGG | - | chr5_4:66156468-66156487 | None:intergenic | 45.0% | |
| TAGGGTCCAAAACAGAAGCA+AGG | - | chr5_4:66156469-66156488 | None:intergenic | 45.0% | |
| !! | TTGCTTCTGTTTTGGACCCT+AGG | + | chr5_4:66156468-66156487 | Msa0865450:CDS | 45.0% |
| GGACCCTAGGATCAAAATGA+TGG | + | chr5_4:66156481-66156500 | Msa0865450:CDS | 45.0% | |
| ! | CTTCAGGAGCATAGAGAAGA+TGG | + | chr5_4:66156611-66156630 | Msa0865450:CDS | 45.0% |
| ! | TGTCCTTTTGTGCCTTGGAA+TGG | + | chr5_4:66156807-66156826 | Msa0865450:CDS | 45.0% |
| ! | TCAGAGTCAACTTTTAGCGC+CGG | + | chr5_4:66156911-66156930 | Msa0865450:CDS | 45.0% |
| !! | GATTGGCTTCGAGTATTGCA+TGG | + | chr5_4:66157004-66157023 | Msa0865450:CDS | 45.0% |
| !!! | TATCAATATTTTTTATTAAT+AGG | + | chr5_4:66157108-66157127 | Msa0865450:intron | 5.0% |
| CATCTTCCTTGTGACGCTGA+CGG | + | chr5_4:66153326-66153345 | Msa0865450:five_prime_UTR | 50.0% | |
| GTTGGAACAACAGGGAGACA+TGG | - | chr5_4:66153431-66153450 | None:intergenic | 50.0% | |
| GCAGCAGCAACAACATCACT+TGG | - | chr5_4:66153497-66153516 | None:intergenic | 50.0% | |
| GAATGATCCTTCGTTGACGG+AGG | + | chr5_4:66153568-66153587 | Msa0865450:five_prime_UTR | 50.0% | |
| TTCTCTTCCTCCGTCAACGA+AGG | - | chr5_4:66153578-66153597 | None:intergenic | 50.0% | |
| TCATACTTGTAGGGTGGACC+TGG | + | chr5_4:66154828-66154847 | Msa0865450:intron | 50.0% | |
| CATACTTGTAGGGTGGACCT+GGG | + | chr5_4:66154829-66154848 | Msa0865450:intron | 50.0% | |
| AACGAGAAGCCACTGCACAT+TGG | + | chr5_4:66155429-66155448 | Msa0865450:CDS | 50.0% | |
| ACGAGAAGCCACTGCACATT+GGG | + | chr5_4:66155430-66155449 | Msa0865450:CDS | 50.0% | |
| ATATCAACACCACGTCCAGG+AGG | - | chr5_4:66155758-66155777 | None:intergenic | 50.0% | |
| GCAATATCAACACCACGTCC+AGG | - | chr5_4:66155761-66155780 | None:intergenic | 50.0% | |
| TTGGAGCCAACAAGAGACAC+AGG | + | chr5_4:66156671-66156690 | Msa0865450:CDS | 50.0% | |
| TGGAGCCAACAAGAGACACA+GGG | + | chr5_4:66156672-66156691 | Msa0865450:CDS | 50.0% | |
| CCACCATTCCAAGGCACAAA+AGG | - | chr5_4:66156813-66156832 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCCTTGGAATGG+TGG | + | chr5_4:66156810-66156829 | Msa0865450:CDS | 50.0% |
| ! | CAGAGTCAACTTTTAGCGCC+GGG | + | chr5_4:66156912-66156931 | Msa0865450:CDS | 50.0% |
| ! | AGAGTCAACTTTTAGCGCCG+GGG | + | chr5_4:66156913-66156932 | Msa0865450:CDS | 50.0% |
| TGAGTCAATAACTCTCCCCC+CGG | - | chr5_4:66156933-66156952 | None:intergenic | 50.0% | |
| GTTGAAGGCTGTGGCAAATG+TGG | + | chr5_4:66157744-66157763 | Msa0865450:three_prime_UTR | 50.0% | |
| GTCTTGAAGGGGAGAGCAAT+TGG | + | chr5_4:66157781-66157800 | Msa0865450:three_prime_UTR | 50.0% | |
| AGGGGAGAGCAATTGGAGTT+TGG | + | chr5_4:66157788-66157807 | Msa0865450:three_prime_UTR | 50.0% | |
| CGTCAGCGTCACAAGGAAGA+TGG | - | chr5_4:66153328-66153347 | None:intergenic | 55.0% | |
| CATACACCGTCAGCGTCACA+AGG | - | chr5_4:66153335-66153354 | None:intergenic | 55.0% | |
| TGACGCTGACGGTGTATGCA+TGG | + | chr5_4:66153337-66153356 | Msa0865450:five_prime_UTR | 55.0% | |
| GCAAAACCTGCACAGCACCA+TGG | + | chr5_4:66153399-66153418 | Msa0865450:five_prime_UTR | 55.0% | |
| !! | AACATGCCATGGTGCTGTGC+AGG | - | chr5_4:66153408-66153427 | None:intergenic | 55.0% |
| GGGAGACATGGAACATGCCA+TGG | - | chr5_4:66153419-66153438 | None:intergenic | 55.0% | |
| ACAAGATCCCCCGCAACAGA+CGG | - | chr5_4:66153527-66153546 | None:intergenic | 55.0% | |
| AGCCAACAAGAGACACAGGG+TGG | + | chr5_4:66156675-66156694 | Msa0865450:CDS | 55.0% | |
| GACCACCCTGTGTCTCTTGT+TGG | - | chr5_4:66156680-66156699 | None:intergenic | 55.0% | |
| !! | GAGTCAACTTTTAGCGCCGG+GGG | + | chr5_4:66156914-66156933 | Msa0865450:CDS | 55.0% |
| !! | AGTCAACTTTTAGCGCCGGG+GGG | + | chr5_4:66156915-66156934 | Msa0865450:CDS | 55.0% |
| TGCTGCTGCTCCGTCTGTTG+CGG | + | chr5_4:66153514-66153533 | Msa0865450:five_prime_UTR | 60.0% | |
| CATGTTCCTCCTCCTGGACG+TGG | + | chr5_4:66155746-66155765 | Msa0865450:CDS | 60.0% | |
| TCAACACCACGTCCAGGAGG+AGG | - | chr5_4:66155755-66155774 | None:intergenic | 60.0% | |
| GCTGCTGCTCCGTCTGTTGC+GGG | + | chr5_4:66153515-66153534 | Msa0865450:five_prime_UTR | 65.0% | |
| CTGCTGCTCCGTCTGTTGCG+GGG | + | chr5_4:66153516-66153535 | Msa0865450:five_prime_UTR | 65.0% | |
| TGCTGCTCCGTCTGTTGCGG+GGG | + | chr5_4:66153517-66153536 | Msa0865450:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 66153308 | 66157949 | 66153308 | ID=Msa0865450;Name=Msa0865450 |
| chr5_4 | mRNA | 66153308 | 66157949 | 66153308 | ID=Msa0865450-mRNA-1;Parent=Msa0865450;Name=Msa0865450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=543|0.4|0.33|0.66|0.8|0.66|6|283|681 |
| chr5_4 | exon | 66153308 | 66153739 | 66153308 | ID=Msa0865450-mRNA-1:exon:20917;Parent=Msa0865450-mRNA-1 |
| chr5_4 | exon | 66153815 | 66153923 | 66153815 | ID=Msa0865450-mRNA-1:exon:20918;Parent=Msa0865450-mRNA-1 |
| chr5_4 | exon | 66154946 | 66155884 | 66154946 | ID=Msa0865450-mRNA-1:exon:20919;Parent=Msa0865450-mRNA-1 |
| chr5_4 | exon | 66155976 | 66157045 | 66155976 | ID=Msa0865450-mRNA-1:exon:20920;Parent=Msa0865450-mRNA-1 |
| chr5_4 | exon | 66157130 | 66157178 | 66157130 | ID=Msa0865450-mRNA-1:exon:20921;Parent=Msa0865450-mRNA-1 |
| chr5_4 | exon | 66157677 | 66157949 | 66157677 | ID=Msa0865450-mRNA-1:exon:20922;Parent=Msa0865450-mRNA-1 |
| chr5_4 | five_prime_UTR | 66153308 | 66153739 | 66153308 | ID=Msa0865450-mRNA-1:five_prime_utr;Parent=Msa0865450-mRNA-1 |
| chr5_4 | five_prime_UTR | 66153815 | 66153923 | 66153815 | ID=Msa0865450-mRNA-1:five_prime_utr;Parent=Msa0865450-mRNA-1 |
| chr5_4 | five_prime_UTR | 66154946 | 66154947 | 66154946 | ID=Msa0865450-mRNA-1:five_prime_utr;Parent=Msa0865450-mRNA-1 |
| chr5_4 | CDS | 66154948 | 66155884 | 66154948 | ID=Msa0865450-mRNA-1:cds;Parent=Msa0865450-mRNA-1 |
| chr5_4 | CDS | 66155976 | 66157045 | 66155976 | ID=Msa0865450-mRNA-1:cds;Parent=Msa0865450-mRNA-1 |
| chr5_4 | CDS | 66157130 | 66157168 | 66157130 | ID=Msa0865450-mRNA-1:cds;Parent=Msa0865450-mRNA-1 |
| chr5_4 | three_prime_UTR | 66157169 | 66157178 | 66157169 | ID=Msa0865450-mRNA-1:three_prime_utr;Parent=Msa0865450-mRNA-1 |
| chr5_4 | three_prime_UTR | 66157677 | 66157949 | 66157677 | ID=Msa0865450-mRNA-1:three_prime_utr;Parent=Msa0865450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
