AlfalfaGEDB | Msa0119950

M. sativa cultivar zhongmu-4 / Msa0119950

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119950	XP_013467935.1	98.234	906	16	0	1	906	1	906	0.0	1833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119950	A0A072VJK4	98.234	906	16	0	1	906	1	906	0.0	1833

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008250	Msa0119950	0.801778	7.668993e-49	-8.615850e-47
Msa0009800	Msa0119950	0.814301	1.652192e-51	-8.615850e-47
Msa0018870	Msa0119950	0.828967	6.696599e-55	-8.615850e-47
Msa0025690	Msa0119950	0.809998	1.433839e-50	-8.615850e-47
Msa0030400	Msa0119950	0.801377	9.265274e-49	-8.615850e-47
Msa0032450	Msa0119950	0.841339	5.046685e-58	-8.615850e-47
Msa0041780	Msa0119950	0.838040	3.641132e-57	-8.615850e-47
Msa0046360	Msa0119950	0.818680	1.727672e-52	-8.615850e-47
Msa0047470	Msa0119950	0.801341	9.426226e-49	-8.615850e-47
Msa0051600	Msa0119950	0.808314	3.290837e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0119950	MtrunA17_Chr1g0178091	98.234	906	16	0	1	906	1	906	0.0	1833
Msa0119950	MtrunA17_Chr7g0266791	65.752	911	275	10	1	905	1	880	0.0	1127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0119950	AT3G11560.3	59.140	837	312	8	58	889	45	856	981
Msa0119950	AT3G11560.2	59.140	837	312	8	58	889	45	856	981
Msa0119950	AT3G11560.4	59.140	837	312	8	58	889	45	856	981
Msa0119950	AT5G06220.3	55.373	912	366	15	1	903	1	880	938
Msa0119950	AT5G06220.2	53.698	933	374	16	1	903	1	905	910
Msa0119950	AT5G06220.1	51.595	909	353	15	1	903	1	828	832
Msa0119950	AT3G11560.1	60.377	583	208	5	58	635	45	609	716
Msa0119950	AT3G11560.5	60.377	583	208	5	58	635	45	609	716

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Find 256 sgRNAs with CRISPR-Local

Find 971 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAGCCAAAGTCATG+TGG	0.608768	1_3:+44470000	Msa0119940:intron
AAAGAAAACATACAAAGCAA+TGG	0.602552	1_3:+44479432	None:intergenic
AAAGAATGACAATGTAAAGG+TGG	0.599299	1_3:-44474665	Msa0119950:CDS
AAAGGCTGATTCTCTGCAAG+AGG	0.626235	1_3:-44475811	Msa0119950:intron
AAATCTTCAATTGGATCATC+GGG	0.443539	1_3:+44478247	None:intergenic
AAATGGGGCAGTTCAAGAAA+GGG	0.611700	1_3:-44482820	Msa0119950:CDS
AACAGCCTGAAGTGTACGAA+TGG	0.620134	1_3:-44479531	Msa0119950:CDS
AACAGCCTGCACCAAATGTA+GGG	0.479756	1_3:-44473035	Msa0119950:CDS
AACCATCACACCGGTTGGTG+AGG	0.578656	1_3:-44474716	Msa0119950:CDS
AACCCCACCCGATGCTCCTC+AGG	0.434501	1_3:+44470539	Msa0119940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAGAGTGAAATAGAGA+AGG	+	chr1_3:44470021-44470040	Msa0119940:intron	30.0%
CCTTAACGGAAGAAAATTAT+TGG	+	chr1_3:44470142-44470161	Msa0119940:intron	30.0%
CCTGAATTACCTACAAAAAA+GGG	+	chr1_3:44470489-44470508	Msa0119940:CDS	30.0%
ACCTGAATTACCTACAAAAA+AGG	+	chr1_3:44470490-44470509	Msa0119940:CDS	30.0%
CATTCTCAATCTAAGAAGAA+TGG	-	chr1_3:44470864-44470883	Msa0119950:intron	30.0%
TTCTCAATCTAAGAAGAATG+GGG	-	chr1_3:44470866-44470885	Msa0119950:intron	30.0%
ATAATATAACCGTAAAACGC+GGG	+	chr1_3:44470941-44470960	None:intergenic	30.0%
CGAAGTTACAAGAAATAGTT+TGG	-	chr1_3:44471853-44471872	Msa0119950:intron	30.0%
TAAGCATTTATGAGACTGTT+TGG	-	chr1_3:44471926-44471945	Msa0119950:intron	30.0%
AAGCATTTATGAGACTGTTT+GGG	-	chr1_3:44471927-44471946	Msa0119950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	44469964	44485383	44469964	ID=Msa0119950;Name=Msa0119950
chr1_3	mRNA	44469964	44485383	44469964	ID=Msa0119950-mRNA-1;Parent=Msa0119950;Name=Msa0119950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=153\|1\|1\|1\|1\|1\|18\|789\|906
chr1_3	exon	44469964	44470872	44469964	ID=Msa0119950-mRNA-1:exon:13273;Parent=Msa0119950-mRNA-1
chr1_3	exon	44470982	44471041	44470982	ID=Msa0119950-mRNA-1:exon:13272;Parent=Msa0119950-mRNA-1
chr1_3	exon	44471946	44472116	44471946	ID=Msa0119950-mRNA-1:exon:13271;Parent=Msa0119950-mRNA-1
chr1_3	exon	44472360	44472485	44472360	ID=Msa0119950-mRNA-1:exon:13270;Parent=Msa0119950-mRNA-1
chr1_3	exon	44472924	44473070	44472924	ID=Msa0119950-mRNA-1:exon:13269;Parent=Msa0119950-mRNA-1
chr1_3	exon	44474442	44474529	44474442	ID=Msa0119950-mRNA-1:exon:13268;Parent=Msa0119950-mRNA-1
chr1_3	exon	44474652	44474755	44474652	ID=Msa0119950-mRNA-1:exon:13267;Parent=Msa0119950-mRNA-1
chr1_3	exon	44475812	44476003	44475812	ID=Msa0119950-mRNA-1:exon:13266;Parent=Msa0119950-mRNA-1
chr1_3	exon	44476220	44476313	44476220	ID=Msa0119950-mRNA-1:exon:13265;Parent=Msa0119950-mRNA-1
chr1_3	exon	44477456	44477500	44477456	ID=Msa0119950-mRNA-1:exon:13264;Parent=Msa0119950-mRNA-1
chr1_3	exon	44477586	44477803	44477586	ID=Msa0119950-mRNA-1:exon:13263;Parent=Msa0119950-mRNA-1
chr1_3	exon	44477887	44477959	44477887	ID=Msa0119950-mRNA-1:exon:13262;Parent=Msa0119950-mRNA-1
chr1_3	exon	44478241	44478359	44478241	ID=Msa0119950-mRNA-1:exon:13261;Parent=Msa0119950-mRNA-1
chr1_3	exon	44478939	44479326	44478939	ID=Msa0119950-mRNA-1:exon:13260;Parent=Msa0119950-mRNA-1
chr1_3	exon	44479445	44479609	44479445	ID=Msa0119950-mRNA-1:exon:13259;Parent=Msa0119950-mRNA-1
chr1_3	exon	44480166	44480257	44480166	ID=Msa0119950-mRNA-1:exon:13258;Parent=Msa0119950-mRNA-1
chr1_3	exon	44482447	44482921	44482447	ID=Msa0119950-mRNA-1:exon:13257;Parent=Msa0119950-mRNA-1
chr1_3	exon	44485187	44485383	44485187	ID=Msa0119950-mRNA-1:exon:13256;Parent=Msa0119950-mRNA-1
chr1_3	five_prime_UTR	44485231	44485383	44485231	ID=Msa0119950-mRNA-1:five_prime_utr;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44485187	44485230	44485187	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44482447	44482921	44482447	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44480166	44480257	44480166	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44479445	44479609	44479445	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44478939	44479326	44478939	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44478241	44478359	44478241	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44477887	44477959	44477887	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44477586	44477803	44477586	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44477456	44477500	44477456	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44476220	44476313	44476220	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44475812	44476003	44475812	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44474652	44474755	44474652	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44474442	44474529	44474442	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44472924	44473070	44472924	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44472360	44472485	44472360	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44471946	44472116	44471946	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44470982	44471041	44470982	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	CDS	44470753	44470872	44470753	ID=Msa0119950-mRNA-1:cds;Parent=Msa0119950-mRNA-1
chr1_3	three_prime_UTR	44469964	44470752	44469964	ID=Msa0119950-mRNA-1:three_prime_utr;Parent=Msa0119950-mRNA-1

Gene Sequence

>Msa0119950

ATGGCAGTTAAATCTCATAGCACCAATAATTTTCTTCCGTTAAGCTCCTCAAATTGCTGCCTTTCGAATGGTTCCTCTAGTGTAGGGAGAAAAGTGTCGGACTTGCATTGCCTACTATTTAGTAAATGGGGCAGTTCAAGAAAGGGATGCCTTATACAACATGATTTGTCTTTGAGCAGTGGTCAAGGTTCTGTGAGCTGTAGAAAACACTATTTTACGTTTTCTAAGGCGGGAAGGAGTGTAAATTTGCTTCCATTTGCTACCTCTGATGATGGTATGACTGTCAACGGGAGTCCACAAGCTGACGCCAGTGCTAACCTTGAAAAAATGAGGGTGAAATTGAATAGCTCTCTTGAAGATGAAGACTTTTATGATGGACTTGTTCAAGCTTTATATGATGCAGCCAGGGTTTTTGAGCTCGCAATTAAAGACCATAAATCGTCATCACGTGGATCCTGGTTTTCAACAGCTTGGCTTGGGGTAGACCAAACCGCATGGGTGAAGGCATTGTCATGTCAGGCTGCCGTGTACTCTTTATTATATGCTGCAAGTGAAATTTCATCCCGAGATGATAGCAGAGATAGAAATGTCAATGTATTTGTTCAAAGGAGTTTGCTAAGGCTATCTGCTCCCTTGGAGAGCTTAATCAGAGAAAACTTATCTGCCAAACAGCCTGAAGTGTACGAATGGTTTTGGTCTGAGCAAGTTCCAGCTGTAGTGACGTCCTTTGTTAATAAGTTTGAAGGGGACGGGCGCTTCACTTCTGCCATTGCTTTGTCTGGAAAAACTAAGGGTTTGAGCAGTGCAAGTGATGCATCACTTCTCCTGCTTGCACTTACATGCATTGCTGCAATTGCTAAACTTGGCCCGGCAAAAGTTTCTTGCTCACAATTCTTTTCCATGAGCACTGAGATAACTGGTAGTTTGATGGACATGCTGGTTGGTTTAATTCCTGTAAGTCAAGCTTATAATTCTATAAAGGATGTTGGTCTACACAGAGAATTTCTTGTACATTTTGGTCCTCGAGCTGCAGCTTTTAGAGCTAACGTTGAGTGGGGTTCAGAAGAGGTTATTTTCTGGGTAAATCTGGTTCAGAAGCAGCTGCAGCAGGCTATTGATAAGGAGAAAATATGGTCAAGACTGACAACATCTGAAAGCATTGAGGTTTTGGAGAAGGATTTGGCTATATTTGGATTCTTTATTGCTTTAGGAAGAAGTACACGAACATTTCTTTTGGCAAATGGTTTCGATGGTCCCGATGATCCAATTGAAGATTTCATCAGGTATCTTATTGGGGGAAGTGTTTTATACTACCCACAACTCTCATCCATTAGTTCATATCAATTGTATGTTGAGGTAGTTTGTGAAGAGCTGGATTGGCTTCCTTTTTATCCGGGAATCACCAGCATCACAAAACAGTCTCATGGTCATAGTAAACCAGAAGGTCCTCCAAATGCAGAAGCAGTGACCCAAGCATTTGCTGTTTGCTCTTATTGGATGCAGAGCTTTATTAAATACAGCACATGGCTTGAGAGTCCTTCAAATGTAAAAGCAGCTGAATTTCTGTCCAGAGGGCACAACAAGTTGATGGAGTGCATGGATGAACTTGGGATGATAAAAGATAAGACATTGGAGAGTGATGCCAAGAAAATAGTTGACGGGCAAAGATCCACAATTCAGTCAACGATAAAAGACTCGGGTTCTTTTGATGAGGCATTAAAAAGTGTCGAAGAAGCTGTGATAAAGCTTGAAAAGTTGCTTCAAGAATTGCATGTGTCAAGCTCTAGTTCTGGAAAGGAGCATTTGAAAGCAGCCTGTTCTGACTTGGAAAAAATACGGAAACTTAAGAAAGAAGCTGAATTCCTGGAGGCATCTTTCCGAGCAAAGGCTGATTCTCTGCAAGAGGGAGTTAATAGTGATCAAACCATCACACCGGTTGGTGAGGAGGACAGGTTTATGAAAGGGAAAAGCAGAAAGAATGACAATGTAAAGGTGGACAGGAGCAAAAGACAAATTGGAAAATCTCGTGGATTCTGGAGCATATTTGTACCTCCTATACCCAGAAAGCCCGACCCGGAACCTGATGTGGATGCTCATGAAAATTATATTGAACAGCCTGCACCAAATGTAGGGGTTGTGGACCAAGAACCCAATGAAATCCTTCGCTTTGAGCTTCTAAGAAATGAGCTGATGGAACTTGAGAAAAGGGTCCAAAGAAGTGCCTATCAATCAGAAAACAATGAGGATTTGATGATCAGTGATGATGGTGCCCGTTATAACGGTGATGCTGGAGGTGTTCAGATGGTCAGAGTTCAGAAGAATGAAAATTTCATACAGAAATCTTTTGACAAACTAAAAGAAACGGGAACGGATGTCTTGCAAGGAACTCAACTTCTTGCTATTGATGTTGGTGCTGCCTCGGGTTTGGTCAAAAGGACCTTAATAGGTGATGAATTGACTGAGAAGGAGAAGAAAGCACTTAAAAGAACCTTAACTGACATGGCTTCAGTTGTTCCTATCGGCATTTTAATGCTTCTTCCTGTTACTGCCGTTGGGCATGCAGCAATGTTGGCTGCCATTCAGAGATATGTACCATCCCTGATTCCATCCACTTATGCACCAGAAAGGTTGGATCTCTTGAGGCAGCTTGAGAAAGTGAAGCAAATGTCAATGTCAACCAGTGATGTAGATTCAGATGATGAAATGGATGGAGTTAAATGA

Protein sequence

>Msa0119950

MAVKSHSTNNFLPLSSSNCCLSNGSSSVGRKVSDLHCLLFSKWGSSRKGCLIQHDLSLSSGQGSVSCRKHYFTFSKAGRSVNLLPFATSDDGMTVNGSPQADASANLEKMRVKLNSSLEDEDFYDGLVQALYDAARVFELAIKDHKSSSRGSWFSTAWLGVDQTAWVKALSCQAAVYSLLYAASEISSRDDSRDRNVNVFVQRSLLRLSAPLESLIRENLSAKQPEVYEWFWSEQVPAVVTSFVNKFEGDGRFTSAIALSGKTKGLSSASDASLLLLALTCIAAIAKLGPAKVSCSQFFSMSTEITGSLMDMLVGLIPVSQAYNSIKDVGLHREFLVHFGPRAAAFRANVEWGSEEVIFWVNLVQKQLQQAIDKEKIWSRLTTSESIEVLEKDLAIFGFFIALGRSTRTFLLANGFDGPDDPIEDFIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSITKQSHGHSKPEGPPNAEAVTQAFAVCSYWMQSFIKYSTWLESPSNVKAAEFLSRGHNKLMECMDELGMIKDKTLESDAKKIVDGQRSTIQSTIKDSGSFDEALKSVEEAVIKLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLKKEAEFLEASFRAKADSLQEGVNSDQTITPVGEEDRFMKGKSRKNDNVKVDRSKRQIGKSRGFWSIFVPPIPRKPDPEPDVDAHENYIEQPAPNVGVVDQEPNEILRFELLRNELMELEKRVQRSAYQSENNEDLMISDDGARYNGDAGGVQMVRVQKNENFIQKSFDKLKETGTDVLQGTQLLAIDVGAASGLVKRTLIGDELTEKEKKALKRTLTDMASVVPIGILMLLPVTAVGHAAMLAAIQRYVPSLIPSTYAPERLDLLRQLEKVKQMSMSTSDVDSDDEMDGVK*