AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606200 MtrunA17_Chr4g0035731 88.850 287 29 2 1 286 1 285 5.95e-160 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606200 AT2G21350.1 41.200 250 109 8 2 246 3 219 1.55e-41 143
Msa0606200 AT4G39040.2 62.500 112 42 0 146 257 153 264 1.93e-35 129
Msa0606200 AT4G39040.1 62.500 112 42 0 146 257 153 264 2.34e-35 129

Find 92 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGGGATTGTCGATTTC+TGG 0.153329 4_2:+52338783 Msa0606200:three_prime_UTR
TTCAATTTCGTCTTCTTCTA+TGG 0.227363 4_2:-52336540 None:intergenic
CGAACCCCGCCGTGATGATT+TGG 0.238788 4_2:-52338619 None:intergenic
GACTAGGCCTGTATAAAATA+AGG 0.255349 4_2:-52338408 None:intergenic
TGGGTCTTATGCACATAGTT+TGG 0.267978 4_2:+52336733 Msa0606200:CDS
CCTCTTTCTTCCTTCGTTGA+AGG 0.270970 4_2:+52336503 Msa0606200:CDS
ATCATATAAACTAGACTTAC+AGG 0.279272 4_2:+52339050 Msa0606200:three_prime_UTR
GAGAGAAGAGAGATTGAAAT+TGG 0.291593 4_2:+52336673 Msa0606200:CDS
GGGTCTTATGCACATAGTTT+GGG 0.294992 4_2:+52336734 Msa0606200:CDS
TGATGCCGTCATCTCTGTTT+TGG 0.306359 4_2:-52336261 None:intergenic
ATGAAGTCTTAAATTGAGTT+TGG 0.322635 4_2:+52338861 Msa0606200:three_prime_UTR
AACGAAGACTACTAATAAAC+AGG 0.325327 4_2:+52338497 Msa0606200:CDS
TAAGAAGTTCATTAGCTTCA+AGG 0.331752 4_2:-52336829 None:intergenic
TGAAGCTAATGAACTTCTTA+AGG 0.332588 4_2:+52336832 Msa0606200:CDS
TTTGGACTGTGAAATGAAAC+TGG 0.355620 4_2:-52336243 None:intergenic
AAAGAGTCTCATTCTTGTTC+AGG 0.362299 4_2:-52338709 None:intergenic
GAACCCCGCCGTGATGATTT+GGG 0.368695 4_2:-52338618 None:intergenic
TGGAGAATGTTGCTTCCATT+TGG 0.384947 4_2:+52338987 Msa0606200:three_prime_UTR
ACACAATTGGTGGGTAAGTC+TGG 0.392170 4_2:+52336770 Msa0606200:CDS
TACTGGCAGATGAGAATTCC+GGG 0.399607 4_2:+52338768 Msa0606200:three_prime_UTR
GTACTGGCAGATGAGAATTC+CGG 0.402233 4_2:+52338767 Msa0606200:three_prime_UTR
GGAAGAAAGAGGAGGGATGT+AGG 0.418907 4_2:-52336492 None:intergenic
AAATAAGGGTTCGACCAATC+TGG 0.423091 4_2:-52338393 None:intergenic
CATGGAAAGCGAGAGGAAAT+AGG 0.424887 4_2:+52338643 Msa0606200:CDS
CCAGTACAATGTCCAGTCCT+TGG 0.439188 4_2:-52338751 None:intergenic
ACTGAAAGCAGTAATAAGAT+TGG 0.440308 4_2:-52336801 None:intergenic
TCAGTGACCGTTGGCCAGAT+TGG 0.443479 4_2:+52338379 Msa0606200:CDS
CGAAGGGTAATATTGGAAGA+AGG 0.461644 4_2:-52336386 None:intergenic
AATCTCATCCACCGCCACTT+TGG 0.465240 4_2:-52336621 None:intergenic
CTATTTCCTCTCGCTTTCCA+TGG 0.468374 4_2:-52338642 None:intergenic
CAGTACAATGTCCAGTCCTT+GGG 0.469095 4_2:-52338750 None:intergenic
GGAACACTTGTATGAGGTTG+TGG 0.470746 4_2:+52338811 Msa0606200:three_prime_UTR
GCCTAGTCTCTCCAAATTGA+AGG 0.481817 4_2:+52338423 Msa0606200:CDS
GGATAAGAAATATGGTGAAC+GGG 0.482122 4_2:-52336441 None:intergenic
CTGAAAGCAGTAATAAGATT+GGG 0.482185 4_2:-52336800 None:intergenic
ACTAGGCCTGTATAAAATAA+GGG 0.483984 4_2:-52338407 None:intergenic
CTTTCCTTCACACTCAAACT+CGG 0.486915 4_2:-52336701 None:intergenic
ATTGAGTTTGGTTTATTCTG+TGG 0.487591 4_2:+52338873 Msa0606200:three_prime_UTR
AAAATACACGGGAGTTGTCC+AGG 0.506780 4_2:+52338313 Msa0606200:CDS
AAGAAAAGAAGAAACAAGTT+CGG 0.507063 4_2:+52338449 Msa0606200:CDS
AGAAGATGTTGTGAAGCAGT+TGG 0.507699 4_2:+52338342 Msa0606200:CDS
TGAAGATACCAAAGTGGCGG+TGG 0.512629 4_2:+52336613 Msa0606200:CDS
GATTGTCGATTTCTGGATCA+AGG 0.513618 4_2:+52338790 Msa0606200:three_prime_UTR
AAGACTTCATCCTCTAGCTC+CGG 0.515644 4_2:-52338848 None:intergenic
AAGCAGTTGGAAGAAGCAAC+TGG 0.518116 4_2:+52338355 Msa0606200:CDS
TTTGAGAAATGAAATGAAAG+AGG 0.521063 4_2:-52336351 None:intergenic
TCTTCTCTCTTACTCATCAA+TGG 0.521598 4_2:-52336659 None:intergenic
CGAAGGATTGTTGTGGTGCA+TGG 0.526235 4_2:+52338686 Msa0606200:three_prime_UTR
AGAACCCAAATCATCACGGC+GGG 0.527975 4_2:+52338614 Msa0606200:CDS
AAAGCTTAGCACACAATTGG+TGG 0.528041 4_2:+52336760 Msa0606200:CDS
CCAAGGACTGGACATTGTAC+TGG 0.532343 4_2:+52338751 Msa0606200:three_prime_UTR
GTGAAGGAAAGGAAAGAACT+TGG 0.535787 4_2:+52336713 Msa0606200:CDS
TGTGGAATGTGCTTTGTGAC+CGG 0.545351 4_2:+52338829 Msa0606200:three_prime_UTR
GATCAAGGAACACTTGTATG+AGG 0.553111 4_2:+52338805 Msa0606200:three_prime_UTR
TTGGAAGAAGGAATAAAGAG+AGG 0.559901 4_2:-52336374 None:intergenic
ACGGTAACGGCGGTTGTGAA+CGG 0.569654 4_2:-52336316 None:intergenic
TGGATAAGAAATATGGTGAA+CGG 0.571212 4_2:-52336442 None:intergenic
GAAGATGACGGTGACGGTAA+CGG 0.572355 4_2:-52336329 None:intergenic
ACATACTGATACCCAAGGAC+TGG 0.573563 4_2:+52338739 Msa0606200:three_prime_UTR
TGAAGTTGAACCTTCAACGA+AGG 0.575257 4_2:-52336513 None:intergenic
CGAGTTTGAGTGTGAAGGAA+AGG 0.578460 4_2:+52336702 Msa0606200:CDS
CATCACGGCGGGGTTCGCCA+TGG 0.588212 4_2:+52338625 Msa0606200:CDS
GATCCAGAAATCGACAATCC+CGG 0.588392 4_2:-52338786 None:intergenic
GGTCTTATGCACATAGTTTG+GGG 0.589830 4_2:+52336735 Msa0606200:CDS
CCTTCAACGAAGGAAGAAAG+AGG 0.590228 4_2:-52336503 None:intergenic
ACAACATCTTCTAACTCACC+TGG 0.594667 4_2:-52338331 None:intergenic
GAGAACGACGAGGAGGTGAG+AGG 0.594830 4_2:-52336294 None:intergenic
CATTTACAGATTAAAATACA+CGG 0.607337 4_2:+52338301 Msa0606200:intron
GTTTCGTCGAAGGATTGTTG+TGG 0.608084 4_2:+52338679 Msa0606200:three_prime_UTR
TAAACACGTAGTTTCGTCGA+AGG 0.615826 4_2:+52338669 Msa0606200:exon
TGCTTTGTGACCGGAGCTAG+AGG 0.621918 4_2:+52338838 Msa0606200:three_prime_UTR
ACAGTCCAAAACAGAGATGA+CGG 0.622947 4_2:+52336256 Msa0606200:exon
ACCTTCAATTTGGAGAGACT+AGG 0.627384 4_2:-52338424 None:intergenic
AAGCTTAGCACACAATTGGT+GGG 0.629215 4_2:+52336761 Msa0606200:CDS
GCAACTGGTTCAGTGACCGT+TGG 0.632856 4_2:+52338370 Msa0606200:CDS
CAACGAAGGAAGAAAGAGGA+GGG 0.633433 4_2:-52336499 None:intergenic
ATTTACAGATTAAAATACAC+GGG 0.633460 4_2:+52338302 Msa0606200:intron
TGAAGGAAAGGAAAGAACTT+GGG 0.637854 4_2:+52336714 Msa0606200:CDS
AAAGAGGAAGATGACGGTGA+CGG 0.641972 4_2:-52336335 None:intergenic
TCAACGAAGGAAGAAAGAGG+AGG 0.642176 4_2:-52336500 None:intergenic
GAAATGAAAGAGGAAGATGA+CGG 0.644772 4_2:-52336341 None:intergenic
AACAAGAACCCAAATCATCA+CGG 0.648444 4_2:+52338610 Msa0606200:CDS
ACGAAGACTACTAATAAACA+GGG 0.650052 4_2:+52338498 Msa0606200:CDS
GGTTCGACCAATCTGGCCAA+CGG 0.657872 4_2:-52338386 None:intergenic
TGCGTACATACTGATACCCA+AGG 0.659496 4_2:+52338734 Msa0606200:three_prime_UTR
GGTTCGCCATGGAAAGCGAG+AGG 0.664200 4_2:+52338636 Msa0606200:CDS
GAACCCAAATCATCACGGCG+GGG 0.716097 4_2:+52338615 Msa0606200:CDS
AGTGCCGAGTTTGAGTGTGA+AGG 0.720831 4_2:+52336697 Msa0606200:CDS
GTGAACGGAGAACGACGAGG+AGG 0.727474 4_2:-52336301 None:intergenic
GATGACGGTGACGGTAACGG+CGG 0.733207 4_2:-52336326 None:intergenic
AAGAACCCAAATCATCACGG+CGG 0.750849 4_2:+52338613 Msa0606200:CDS
GTTGTGAACGGAGAACGACG+AGG 0.796015 4_2:-52336304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTGTTTGATATATTT+TGG + chr4_2:52336925-52336944 Msa0606200:intron 15.0%
!!! TTATAATCATCTTTATTTGA+AGG + chr4_2:52338029-52338048 Msa0606200:intron 15.0%
!! ATTAATTTATACTTGCAATT+TGG + chr4_2:52338274-52338293 Msa0606200:intron 15.0%
!!! TATTAATTGCAATTTTTTCA+TGG + chr4_2:52338967-52338986 Msa0606200:three_prime_UTR 15.0%
!!! TGATATATTTTGGTAATACA+TGG + chr4_2:52336935-52336954 Msa0606200:intron 20.0%
!!! GATATATTTTGGTAATACAT+GGG + chr4_2:52336936-52336955 Msa0606200:intron 20.0%
!! TTGTCATTGATGTTAATTAT+TGG + chr4_2:52337120-52337139 Msa0606200:intron 20.0%
!! CATTTACAGATTAAAATACA+CGG + chr4_2:52338301-52338320 Msa0606200:intron 20.0%
!! ATTTACAGATTAAAATACAC+GGG + chr4_2:52338302-52338321 Msa0606200:intron 20.0%
! TTTGAGAAATGAAATGAAAG+AGG - chr4_2:52336354-52336373 None:intergenic 25.0%
!! AAATTTTCGAAGGGTAATAT+TGG - chr4_2:52336396-52336415 None:intergenic 25.0%
! TAATGAACTTCTTAAGGTAA+TGG + chr4_2:52336838-52336857 Msa0606200:intron 25.0%
!!! AATGTGTTATTGTTTTCATG+TGG + chr4_2:52337036-52337055 Msa0606200:intron 25.0%
! AATTACAGATGCTAAACATA+CGG - chr4_2:52337072-52337091 None:intergenic 25.0%
! AAAGTGAATGCAAATTCATT+AGG + chr4_2:52337176-52337195 Msa0606200:intron 25.0%
! AATAGCAGATTGTTTCAATT+CGG + chr4_2:52337232-52337251 Msa0606200:intron 25.0%
! ACAAAATTATTGTCAACTAG+TGG - chr4_2:52337288-52337307 None:intergenic 25.0%
! TTGTTAAATACCATCTATAG+TGG - chr4_2:52337377-52337396 None:intergenic 25.0%
! TAGATGGTATTTAACAACAT+TGG + chr4_2:52337380-52337399 Msa0606200:intron 25.0%
! AGATGGTATTTAACAACATT+GGG + chr4_2:52337381-52337400 Msa0606200:intron 25.0%
!! GATTTAGCAAGAGTATATTT+AGG + chr4_2:52337439-52337458 Msa0606200:intron 25.0%
! ATAGATACTGAGAGTAATTT+AGG - chr4_2:52337564-52337583 None:intergenic 25.0%
!! ATCAATCTATAGACCATTTT+AGG - chr4_2:52337885-52337904 None:intergenic 25.0%
!! ACTTCAGAGTGTAATTTTTA+TGG + chr4_2:52338003-52338022 Msa0606200:intron 25.0%
!! TAATCATCTTTATTTGAAGG+AGG + chr4_2:52338032-52338051 Msa0606200:intron 25.0%
!! AATCATCTTTATTTGAAGGA+GGG + chr4_2:52338033-52338052 Msa0606200:intron 25.0%
!! TTTAGTTCACTCTTATCAAT+TGG - chr4_2:52338114-52338133 None:intergenic 25.0%
! ACAAAGCAATATACTTTCAT+TGG + chr4_2:52338133-52338152 Msa0606200:intron 25.0%
!!! ACTTGTGCATTTTAATGATT+AGG - chr4_2:52338226-52338245 None:intergenic 25.0%
! AAGAAAAGAAGAAACAAGTT+CGG + chr4_2:52338449-52338468 Msa0606200:CDS 25.0%
! ATGAAGTCTTAAATTGAGTT+TGG + chr4_2:52338861-52338880 Msa0606200:three_prime_UTR 25.0%
TGGATAAGAAATATGGTGAA+CGG - chr4_2:52336445-52336464 None:intergenic 30.0%
TTCAATTTCGTCTTCTTCTA+TGG - chr4_2:52336543-52336562 None:intergenic 30.0%
!! GAATTTTGAAGATACCAAAG+TGG + chr4_2:52336607-52336626 Msa0606200:CDS 30.0%
CTGAAAGCAGTAATAAGATT+GGG - chr4_2:52336803-52336822 None:intergenic 30.0%
ACTGAAAGCAGTAATAAGAT+TGG - chr4_2:52336804-52336823 None:intergenic 30.0%
! TAAGAAGTTCATTAGCTTCA+AGG - chr4_2:52336832-52336851 None:intergenic 30.0%
TGAAGCTAATGAACTTCTTA+AGG + chr4_2:52336832-52336851 Msa0606200:CDS 30.0%
! CTGAAAAATGTCTCTGTTTT+CGG + chr4_2:52336893-52336912 Msa0606200:intron 30.0%
CATTGGGCAATACAAATAAA+TGG + chr4_2:52337397-52337416 Msa0606200:intron 30.0%
CAATACAAATAAATGGCCTT+GGG + chr4_2:52337404-52337423 Msa0606200:intron 30.0%
! AATACAAATAAATGGCCTTG+GGG + chr4_2:52337405-52337424 Msa0606200:intron 30.0%
AGAGTATATTTAGGAACTAG+TGG + chr4_2:52337448-52337467 Msa0606200:intron 30.0%
CTGAGAGTAATTTAGGAAAA+TGG - chr4_2:52337557-52337576 None:intergenic 30.0%
!!! GTAAAACGATTGTTTTGAGT+TGG + chr4_2:52337640-52337659 Msa0606200:intron 30.0%
! ATCATCTTTATTTGAAGGAG+GGG + chr4_2:52338034-52338053 Msa0606200:intron 30.0%
TACTGTAAAACTGTTCTACA+CGG + chr4_2:52338160-52338179 Msa0606200:intron 30.0%
!! TGTGCATTTTAATGATTAGG+AGG - chr4_2:52338223-52338242 None:intergenic 30.0%
AGATGCAAAGATTGTGAATA+AGG - chr4_2:52338253-52338272 None:intergenic 30.0%
ACTAGGCCTGTATAAAATAA+GGG - chr4_2:52338410-52338429 None:intergenic 30.0%
! CTTTTCTTCTACCTTCAATT+TGG - chr4_2:52338437-52338456 None:intergenic 30.0%
AACGAAGACTACTAATAAAC+AGG + chr4_2:52338497-52338516 Msa0606200:CDS 30.0%
ACGAAGACTACTAATAAACA+GGG + chr4_2:52338498-52338517 Msa0606200:CDS 30.0%
GAAGAGATCAAAATAATTCG+AGG - chr4_2:52338550-52338569 None:intergenic 30.0%
! ATTGAGTTTGGTTTATTCTG+TGG + chr4_2:52338873-52338892 Msa0606200:three_prime_UTR 30.0%
!! TGCTACTATTTTTCTCCAAA+TGG - chr4_2:52339005-52339024 None:intergenic 30.0%
TTTGGACTGTGAAATGAAAC+TGG - chr4_2:52336246-52336265 None:intergenic 35.0%
GAAATGAAAGAGGAAGATGA+CGG - chr4_2:52336344-52336363 None:intergenic 35.0%
TTGGAAGAAGGAATAAAGAG+AGG - chr4_2:52336377-52336396 None:intergenic 35.0%
!! AAATATGGTGAACGGGTTTT+TGG - chr4_2:52336437-52336456 None:intergenic 35.0%
GGATAAGAAATATGGTGAAC+GGG - chr4_2:52336444-52336463 None:intergenic 35.0%
!! TTTTGAAGATACCAAAGTGG+CGG + chr4_2:52336610-52336629 Msa0606200:CDS 35.0%
TCTTCTCTCTTACTCATCAA+TGG - chr4_2:52336662-52336681 None:intergenic 35.0%
GAGAGAAGAGAGATTGAAAT+TGG + chr4_2:52336673-52336692 Msa0606200:CDS 35.0%
TGAAGGAAAGGAAAGAACTT+GGG + chr4_2:52336714-52336733 Msa0606200:CDS 35.0%
GAAAAAGCTTAGCACACAAT+TGG + chr4_2:52336757-52336776 Msa0606200:CDS 35.0%
! AAATGTCTCTGTTTTCGGTT+TGG + chr4_2:52336898-52336917 Msa0606200:intron 35.0%
!! TTTTGGTAATACATGGGAAG+AGG + chr4_2:52336942-52336961 Msa0606200:intron 35.0%
GTAGGTGTATGTGTTCTTTA+AGG + chr4_2:52336976-52336995 Msa0606200:intron 35.0%
GCAATACAAATAAATGGCCT+TGG + chr4_2:52337403-52337422 Msa0606200:intron 35.0%
! ATACAAATAAATGGCCTTGG+GGG + chr4_2:52337406-52337425 Msa0606200:intron 35.0%
ACCGACACTTTAGATTGAAA+GGG + chr4_2:52337486-52337505 Msa0606200:intron 35.0%
! ACCCTTTCAATCTAAAGTGT+CGG - chr4_2:52337490-52337509 None:intergenic 35.0%
ACATACGCAATCATCAAACA+AGG - chr4_2:52337588-52337607 None:intergenic 35.0%
! CGTTTTACATACATCAAGTC+TGG - chr4_2:52337628-52337647 None:intergenic 35.0%
!!! ACGATTGTTTTGAGTTGGTT+TGG + chr4_2:52337645-52337664 Msa0606200:intron 35.0%
CATGCAATCTTATTCTAGTG+TGG + chr4_2:52337755-52337774 Msa0606200:intron 35.0%
ATCTTATTCTAGTGTGGAAG+TGG + chr4_2:52337761-52337780 Msa0606200:intron 35.0%
! CTTAAGTGTTGCACCTAAAA+TGG + chr4_2:52337869-52337888 Msa0606200:intron 35.0%
TGGTCTATAGATTGATTAGC+TGG + chr4_2:52337889-52337908 Msa0606200:intron 35.0%
! GGTCTATAGATTGATTAGCT+GGG + chr4_2:52337890-52337909 Msa0606200:intron 35.0%
TGCGTGATTCAATTATGTCT+CGG + chr4_2:52337963-52337982 Msa0606200:intron 35.0%
CACGATGAAAAGGATATGTA+TGG - chr4_2:52338187-52338206 None:intergenic 35.0%
AGAGAAAACACACGATGAAA+AGG - chr4_2:52338197-52338216 None:intergenic 35.0%
!!! GTCGAACCCTTATTTTATAC+AGG + chr4_2:52338401-52338420 Msa0606200:CDS 35.0%
GACTAGGCCTGTATAAAATA+AGG - chr4_2:52338411-52338430 None:intergenic 35.0%
!! ACAAGTTCGGAAACTTTTTC+TGG + chr4_2:52338462-52338481 Msa0606200:CDS 35.0%
AGACTACTAATAAACAGGGT+AGG + chr4_2:52338502-52338521 Msa0606200:intron 35.0%
CTAATAAACAGGGTAGGTTA+TGG + chr4_2:52338508-52338527 Msa0606200:intron 35.0%
CAAGAACATTAGTGAAGCAT+AGG - chr4_2:52338572-52338591 None:intergenic 35.0%
AACAAGAACCCAAATCATCA+CGG + chr4_2:52338610-52338629 Msa0606200:CDS 35.0%
AAAGAGTCTCATTCTTGTTC+AGG - chr4_2:52338712-52338731 None:intergenic 35.0%
ACAGTCCAAAACAGAGATGA+CGG + chr4_2:52336256-52336275 Msa0606200:exon 40.0%
CGAAGGGTAATATTGGAAGA+AGG - chr4_2:52336389-52336408 None:intergenic 40.0%
! GTGAGGGTGAAATTTTCGAA+GGG - chr4_2:52336405-52336424 None:intergenic 40.0%
! AAAAAGCGCGGGAAGAAAAA+GGG - chr4_2:52336472-52336491 None:intergenic 40.0%
TGAAGTTGAACCTTCAACGA+AGG - chr4_2:52336516-52336535 None:intergenic 40.0%
CTTTCCTTCACACTCAAACT+CGG - chr4_2:52336704-52336723 None:intergenic 40.0%
GTGAAGGAAAGGAAAGAACT+TGG + chr4_2:52336713-52336732 Msa0606200:CDS 40.0%
! TGGGTCTTATGCACATAGTT+TGG + chr4_2:52336733-52336752 Msa0606200:CDS 40.0%
! GGGTCTTATGCACATAGTTT+GGG + chr4_2:52336734-52336753 Msa0606200:CDS 40.0%
! GGTCTTATGCACATAGTTTG+GGG + chr4_2:52336735-52336754 Msa0606200:CDS 40.0%
AAAGCTTAGCACACAATTGG+TGG + chr4_2:52336760-52336779 Msa0606200:CDS 40.0%
AAGCTTAGCACACAATTGGT+GGG + chr4_2:52336761-52336780 Msa0606200:CDS 40.0%
TACATGGGAAGAGGAATTTG+AGG + chr4_2:52336951-52336970 Msa0606200:intron 40.0%
AATGCCAGAGTTGTCAATTG+TGG + chr4_2:52337200-52337219 Msa0606200:intron 40.0%
CTATCCACAATTGACAACTC+TGG - chr4_2:52337207-52337226 None:intergenic 40.0%
TTGTCAACTAGTGGTTACAG+TGG - chr4_2:52337279-52337298 None:intergenic 40.0%
!! GTCCAAATTCCGATTTGCTA+CGG + chr4_2:52337341-52337360 Msa0606200:intron 40.0%
AATCCAACAAAATACCCCCA+AGG - chr4_2:52337423-52337442 None:intergenic 40.0%
CACCGACACTTTAGATTGAA+AGG + chr4_2:52337485-52337504 Msa0606200:intron 40.0%
ACAAGTGTCATGTTCGACAT+CGG - chr4_2:52337515-52337534 None:intergenic 40.0%
TGCAATAGTCTTTGCAGTCT+TGG + chr4_2:52337668-52337687 Msa0606200:intron 40.0%
TGTGTTTGACAACTTTCCGT+TGG + chr4_2:52337809-52337828 Msa0606200:intron 40.0%
GCGTGATTCAATTATGTCTC+GGG + chr4_2:52337964-52337983 Msa0606200:intron 40.0%
CGTGATTCAATTATGTCTCG+GGG + chr4_2:52337965-52337984 Msa0606200:intron 40.0%
GTGATTCAATTATGTCTCGG+GGG + chr4_2:52337966-52337985 Msa0606200:intron 40.0%
ACAACATCTTCTAACTCACC+TGG - chr4_2:52338334-52338353 None:intergenic 40.0%
AGAAGATGTTGTGAAGCAGT+TGG + chr4_2:52338342-52338361 Msa0606200:CDS 40.0%
AAATAAGGGTTCGACCAATC+TGG - chr4_2:52338396-52338415 None:intergenic 40.0%
ACCTTCAATTTGGAGAGACT+AGG - chr4_2:52338427-52338446 None:intergenic 40.0%
TTCTTGTGAAACTGCAGAGT+AGG + chr4_2:52338586-52338605 Msa0606200:intron 40.0%
TCTTGTGAAACTGCAGAGTA+GGG + chr4_2:52338587-52338606 Msa0606200:intron 40.0%
TAAACACGTAGTTTCGTCGA+AGG + chr4_2:52338669-52338688 Msa0606200:exon 40.0%
!! GATTGTCGATTTCTGGATCA+AGG + chr4_2:52338790-52338809 Msa0606200:three_prime_UTR 40.0%
GATCAAGGAACACTTGTATG+AGG + chr4_2:52338805-52338824 Msa0606200:three_prime_UTR 40.0%
! TGGAGAATGTTGCTTCCATT+TGG + chr4_2:52338987-52339006 Msa0606200:three_prime_UTR 40.0%
! TGATGCCGTCATCTCTGTTT+TGG - chr4_2:52336264-52336283 None:intergenic 45.0%
! AAAGAGGAAGATGACGGTGA+CGG - chr4_2:52336338-52336357 None:intergenic 45.0%
! GGTGAGGGTGAAATTTTCGA+AGG - chr4_2:52336406-52336425 None:intergenic 45.0%
!! TTTTTGGAAGGGATGGGTGA+GGG - chr4_2:52336421-52336440 None:intergenic 45.0%
!! AACGGGTTTTTGGAAGGGAT+GGG - chr4_2:52336427-52336446 None:intergenic 45.0%
!! TGGTGAACGGGTTTTTGGAA+GGG - chr4_2:52336432-52336451 None:intergenic 45.0%
!! ATGGTGAACGGGTTTTTGGA+AGG - chr4_2:52336433-52336452 None:intergenic 45.0%
! GGGGGTGTGGATAAGAAATA+TGG - chr4_2:52336452-52336471 None:intergenic 45.0%
! AAAAGCGCGGGAAGAAAAAG+GGG - chr4_2:52336471-52336490 None:intergenic 45.0%
! GAAAAAGCGCGGGAAGAAAA+AGG - chr4_2:52336473-52336492 None:intergenic 45.0%
CAACGAAGGAAGAAAGAGGA+GGG - chr4_2:52336502-52336521 None:intergenic 45.0%
TCAACGAAGGAAGAAAGAGG+AGG - chr4_2:52336503-52336522 None:intergenic 45.0%
CCTTCAACGAAGGAAGAAAG+AGG - chr4_2:52336506-52336525 None:intergenic 45.0%
CCTCTTTCTTCCTTCGTTGA+AGG + chr4_2:52336503-52336522 Msa0606200:CDS 45.0%
CGAGTTTGAGTGTGAAGGAA+AGG + chr4_2:52336702-52336721 Msa0606200:CDS 45.0%
! ACACAATTGGTGGGTAAGTC+TGG + chr4_2:52336770-52336789 Msa0606200:CDS 45.0%
ATGGGAAGAGGAATTTGAGG+TGG + chr4_2:52336954-52336973 Msa0606200:intron 45.0%
! GAAGAGGAATTTGAGGTGGT+AGG + chr4_2:52336958-52336977 Msa0606200:intron 45.0%
CACCGTAGCAAATCGGAATT+TGG - chr4_2:52337346-52337365 None:intergenic 45.0%
!! CAAATTCCGATTTGCTACGG+TGG + chr4_2:52337344-52337363 Msa0606200:intron 45.0%
GATGTCGAACATGACACTTG+TGG + chr4_2:52337514-52337533 Msa0606200:intron 45.0%
!!! GCAGTCTTGGTGCTTTTTGA+TGG + chr4_2:52337681-52337700 Msa0606200:intron 45.0%
!!! TCTTGGTGCTTTTTGATGGC+TGG + chr4_2:52337685-52337704 Msa0606200:intron 45.0%
AAAATACACGGGAGTTGTCC+AGG + chr4_2:52338313-52338332 Msa0606200:CDS 45.0%
AAGCAGTTGGAAGAAGCAAC+TGG + chr4_2:52338355-52338374 Msa0606200:CDS 45.0%
GCCTAGTCTCTCCAAATTGA+AGG + chr4_2:52338423-52338442 Msa0606200:CDS 45.0%
AAGAACCCAAATCATCACGG+CGG + chr4_2:52338613-52338632 Msa0606200:CDS 45.0%
CTATTTCCTCTCGCTTTCCA+TGG - chr4_2:52338645-52338664 None:intergenic 45.0%
CATGGAAAGCGAGAGGAAAT+AGG + chr4_2:52338643-52338662 Msa0606200:CDS 45.0%
GTTTCGTCGAAGGATTGTTG+TGG + chr4_2:52338679-52338698 Msa0606200:three_prime_UTR 45.0%
TGCGTACATACTGATACCCA+AGG + chr4_2:52338734-52338753 Msa0606200:three_prime_UTR 45.0%
ACATACTGATACCCAAGGAC+TGG + chr4_2:52338739-52338758 Msa0606200:three_prime_UTR 45.0%
CAGTACAATGTCCAGTCCTT+GGG - chr4_2:52338753-52338772 None:intergenic 45.0%
! GTACTGGCAGATGAGAATTC+CGG + chr4_2:52338767-52338786 Msa0606200:three_prime_UTR 45.0%
TACTGGCAGATGAGAATTCC+GGG + chr4_2:52338768-52338787 Msa0606200:three_prime_UTR 45.0%
!! ATTCCGGGATTGTCGATTTC+TGG + chr4_2:52338783-52338802 Msa0606200:three_prime_UTR 45.0%
GATCCAGAAATCGACAATCC+CGG - chr4_2:52338789-52338808 None:intergenic 45.0%
GGAACACTTGTATGAGGTTG+TGG + chr4_2:52338811-52338830 Msa0606200:three_prime_UTR 45.0%
TGTGGAATGTGCTTTGTGAC+CGG + chr4_2:52338829-52338848 Msa0606200:three_prime_UTR 45.0%
! AAGACTTCATCCTCTAGCTC+CGG - chr4_2:52338851-52338870 None:intergenic 45.0%
! GAAGATGACGGTGACGGTAA+CGG - chr4_2:52336332-52336351 None:intergenic 50.0%
!! GTTTTTGGAAGGGATGGGTG+AGG - chr4_2:52336422-52336441 None:intergenic 50.0%
!! GAACGGGTTTTTGGAAGGGA+TGG - chr4_2:52336428-52336447 None:intergenic 50.0%
AAAGCGCGGGAAGAAAAAGG+GGG - chr4_2:52336470-52336489 None:intergenic 50.0%
! AGGGATGTAGGAAAAAGCGC+GGG - chr4_2:52336483-52336502 None:intergenic 50.0%
GAGGGATGTAGGAAAAAGCG+CGG - chr4_2:52336484-52336503 None:intergenic 50.0%
GGAAGAAAGAGGAGGGATGT+AGG - chr4_2:52336495-52336514 None:intergenic 50.0%
TGAAGATACCAAAGTGGCGG+TGG + chr4_2:52336613-52336632 Msa0606200:CDS 50.0%
AATCTCATCCACCGCCACTT+TGG - chr4_2:52336624-52336643 None:intergenic 50.0%
! AGTGCCGAGTTTGAGTGTGA+AGG + chr4_2:52336697-52336716 Msa0606200:CDS 50.0%
!!! TGGCCTTGGGGGTATTTTGT+TGG + chr4_2:52337417-52337436 Msa0606200:intron 50.0%
GTGGCATTGCATGCAAAGCA+TGG + chr4_2:52337780-52337799 Msa0606200:intron 50.0%
ACAGTCAAACCAGTGGCCAA+CGG - chr4_2:52337828-52337847 None:intergenic 50.0%
TCCAGTGACAGTCAAACCAG+TGG - chr4_2:52337835-52337854 None:intergenic 50.0%
AGAACCCAAATCATCACGGC+GGG + chr4_2:52338614-52338633 Msa0606200:CDS 50.0%
CGAAGGATTGTTGTGGTGCA+TGG + chr4_2:52338686-52338705 Msa0606200:three_prime_UTR 50.0%
CCAGTACAATGTCCAGTCCT+TGG - chr4_2:52338754-52338773 None:intergenic 50.0%
CCAAGGACTGGACATTGTAC+TGG + chr4_2:52338751-52338770 Msa0606200:three_prime_UTR 50.0%
GTTGTGAACGGAGAACGACG+AGG - chr4_2:52336307-52336326 None:intergenic 55.0%
! ACGGTAACGGCGGTTGTGAA+CGG - chr4_2:52336319-52336338 None:intergenic 55.0%
!! TCCGATTTGCTACGGTGGTC+TGG + chr4_2:52337349-52337368 Msa0606200:intron 55.0%
GCCAGACCACCGTAGCAAAT+CGG - chr4_2:52337353-52337372 None:intergenic 55.0%
TGGTCTGGCGCCACTATAGA+TGG + chr4_2:52337364-52337383 Msa0606200:intron 55.0%
TTGCAGCAGCTGCGTGACAA+TGG - chr4_2:52337714-52337733 None:intergenic 55.0%
GACAACTTTCCGTTGGCCAC+TGG + chr4_2:52337816-52337835 Msa0606200:intron 55.0%
!! GCCACTGGTTTGACTGTCAC+TGG + chr4_2:52337831-52337850 Msa0606200:intron 55.0%
! GCAACTGGTTCAGTGACCGT+TGG + chr4_2:52338370-52338389 Msa0606200:CDS 55.0%
TCAGTGACCGTTGGCCAGAT+TGG + chr4_2:52338379-52338398 Msa0606200:CDS 55.0%
GGTTCGACCAATCTGGCCAA+CGG - chr4_2:52338389-52338408 None:intergenic 55.0%
GAACCCAAATCATCACGGCG+GGG + chr4_2:52338615-52338634 Msa0606200:CDS 55.0%
GAACCCCGCCGTGATGATTT+GGG - chr4_2:52338621-52338640 None:intergenic 55.0%
TGCTTTGTGACCGGAGCTAG+AGG + chr4_2:52338838-52338857 Msa0606200:three_prime_UTR 55.0%
GAGAACGACGAGGAGGTGAG+AGG - chr4_2:52336297-52336316 None:intergenic 60.0%
GTGAACGGAGAACGACGAGG+AGG - chr4_2:52336304-52336323 None:intergenic 60.0%
! GATGACGGTGACGGTAACGG+CGG - chr4_2:52336329-52336348 None:intergenic 60.0%
GCGGGAAGAAAAAGGGGGTG+TGG - chr4_2:52336465-52336484 None:intergenic 60.0%
GTCACGCAGCTGCTGCAAAG+TGG + chr4_2:52337716-52337735 Msa0606200:intron 60.0%
CGAACCCCGCCGTGATGATT+TGG - chr4_2:52338622-52338641 None:intergenic 60.0%
GGTTCGCCATGGAAAGCGAG+AGG + chr4_2:52338636-52338655 Msa0606200:CDS 60.0%
CATCACGGCGGGGTTCGCCA+TGG + chr4_2:52338625-52338644 Msa0606200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52336236 52339071 52336236 ID=Msa0606200;Name=Msa0606200
chr4_2 mRNA 52336236 52339071 52336236 ID=Msa0606200-mRNA-1;Parent=Msa0606200;Name=Msa0606200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|3|400|286
chr4_2 exon 52336236 52336853 52336236 ID=Msa0606200-mRNA-1:exon:12753;Parent=Msa0606200-mRNA-1
chr4_2 exon 52338310 52338519 52338310 ID=Msa0606200-mRNA-1:exon:12754;Parent=Msa0606200-mRNA-1
chr4_2 exon 52338603 52339071 52338603 ID=Msa0606200-mRNA-1:exon:12755;Parent=Msa0606200-mRNA-1
chr4_2 five_prime_UTR 52336236 52336271 52336236 ID=Msa0606200-mRNA-1:five_prime_utr;Parent=Msa0606200-mRNA-1
chr4_2 CDS 52336272 52336853 52336272 ID=Msa0606200-mRNA-1:cds;Parent=Msa0606200-mRNA-1
chr4_2 CDS 52338310 52338519 52338310 ID=Msa0606200-mRNA-1:cds;Parent=Msa0606200-mRNA-1
chr4_2 CDS 52338603 52338671 52338603 ID=Msa0606200-mRNA-1:cds;Parent=Msa0606200-mRNA-1
chr4_2 three_prime_UTR 52338672 52339071 52338672 ID=Msa0606200-mRNA-1:three_prime_utr;Parent=Msa0606200-mRNA-1
Gene Sequence

>Msa0606200

ATGACGGCATCATCATCAGTATCCTCTCACCTCCTCGTCGTTCTCCGTTCACAACCGCCGTTACCGTCACCGTCATCTTCCTCTTTCATTTCATTTCTCAAACCTCTCTTTATTCCTTCTTCCAATATTACCCTTCGAAAATTTCACCCTCACCCATCCCTTCCAAAAACCCGTTCACCATATTTCTTATCCACACCCCCTTTTTCTTCCCGCGCTTTTTCCTACATCCCTCCTCTTTCTTCCTTCGTTGAAGGTTCAACTTCAAAATCCATAGAAGAAGACGAAATTGAAGATGAATATGATGAAGAAAGAGATGAATTTGAAAGTGAAAGAGAGAATTTTGAAGATACCAAAGTGGCGGTGGATGAGATTGAAACTACATCGTCGCCATTGATGAGTAAGAGAGAAGAGAGATTGAAATTGGAAGTGCCGAGTTTGAGTGTGAAGGAAAGGAAAGAACTTGGGTCTTATGCACATAGTTTGGGGAAAAAGCTTAGCACACAATTGGTGGGTAAGTCTGGTGTTACACCCAATCTTATTACTGCTTTCAGTGATAACCTTGAAGCTAATGAACTTCTTAAGATTAAAATACACGGGAGTTGTCCAGGTGAGTTAGAAGATGTTGTGAAGCAGTTGGAAGAAGCAACTGGTTCAGTGACCGTTGGCCAGATTGGTCGAACCCTTATTTTATACAGGCCTAGTCTCTCCAAATTGAAGGTAGAAGAAAAGAAGAAACAAGTTCGGAAACTTTTTCTGGAAAAACAAAATAAACGAAGACTACTAATAAACAGGAGTAGGGAACAAGAACCCAAATCATCACGGCGGGGTTCGCCATGGAAAGCGAGAGGAAATAGGTCATAA

Protein sequence

>Msa0606200

MTASSSVSSHLLVVLRSQPPLPSPSSSSFISFLKPLFIPSSNITLRKFHPHPSLPKTRSPYFLSTPPFSSRAFSYIPPLSSFVEGSTSKSIEEDEIEDEYDEERDEFESERENFEDTKVAVDEIETTSSPLMSKREERLKLEVPSLSVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLITAFSDNLEANELLKIKIHGSCPGELEDVVKQLEEATGSVTVGQIGRTLILYRPSLSKLKVEEKKKQVRKLFLEKQNKRRLLINRSREQEPKSSRRGSPWKARGNRS*