AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299940 MtrunA17_Chr4g0061431 94.783 230 12 0 1 230 1 230 8.47e-164 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGGGAGGTTGGAATATT+TGG 0.159434 8_3:+61331816 None:intergenic
CCTTGCTGTGATTCTGAAAA+AGG 0.193262 8_3:+61331650 None:intergenic
GTGGGTTGGTTTGTAAATTA+AGG 0.194932 8_3:+61331874 None:intergenic
TTTGGAATTGGTTTGTATAT+TGG 0.217078 8_3:-61331498 Msa1299940:CDS
GGAATGGAGAAATCAATATT+TGG 0.260276 8_3:-61331516 Msa1299940:CDS
TCTTGATGATTCTAGTATTT+CGG 0.269601 8_3:+61331710 None:intergenic
ATCCAACTCACATGCTTGTC+TGG 0.275297 8_3:-61330114 Msa1299940:CDS
TTCTGATCTTTACCATTCTA+AGG 0.302171 8_3:-61331409 Msa1299940:intron
TGGTTTGTAAATTAAGGTTC+TGG 0.319123 8_3:+61331880 None:intergenic
AAGGTTCTGGCTTAGCTTCA+TGG 0.326775 8_3:+61331893 None:intergenic
GAGAAATCAATATTTGGAAT+TGG 0.332954 8_3:-61331510 Msa1299940:CDS
TCTGGTTTGGATTGGTGGGT+TGG 0.337391 8_3:+61331860 None:intergenic
GAAGGGGAGGTAGGGAGAGA+TGG 0.340377 8_3:+61331799 None:intergenic
TTGAAGAACTTATGATAAAA+TGG 0.367734 8_3:-61330060 Msa1299940:CDS
AAGGGGAGGTAGGGAGAGAT+GGG 0.392672 8_3:+61331800 None:intergenic
AAGAGGGAGATGATGAAGTC+TGG 0.398949 8_3:+61331842 None:intergenic
GGAGATGATGAAGTCTGGTT+TGG 0.401750 8_3:+61331847 None:intergenic
GGTAGGGAGAGATGGGAGGT+TGG 0.408763 8_3:+61331807 None:intergenic
TGAAGTCTGGTTTGGATTGG+TGG 0.432119 8_3:+61331855 None:intergenic
AAGTGACTGGTTCATCTGTT+GGG 0.435909 8_3:-61330138 Msa1299940:CDS
GGGAGGTAGGGAGAGATGGG+AGG 0.445867 8_3:+61331803 None:intergenic
TATCATAAGTTCTTCAACAC+TGG 0.457160 8_3:+61330066 None:intergenic
CTGGCTTAGCTTCATGGTGG+AGG 0.465525 8_3:+61331899 None:intergenic
TCCAACTCACATGCTTGTCT+GGG 0.466892 8_3:-61330113 Msa1299940:CDS
GAAGTCTGGTTTGGATTGGT+GGG 0.474714 8_3:+61331856 None:intergenic
GTTGGAATATTTGGTGAAAG+AGG 0.477675 8_3:+61331825 None:intergenic
TTGGAATATTTGGTGAAAGA+GGG 0.484949 8_3:+61331826 None:intergenic
AAGAGGTAATATTCTTCACT+TGG 0.488829 8_3:-61331568 Msa1299940:CDS
GCTTGGAAAAGCCGAGGGAT+TGG 0.488915 8_3:-61331607 Msa1299940:CDS
GGATTGGTAAGAATGTGGTT+TGG 0.503248 8_3:-61331591 Msa1299940:CDS
ATTAGGTTCTACACAAGACT+TGG 0.507328 8_3:-61330178 Msa1299940:CDS
CAGAATCACAGCAAGGAGCT+TGG 0.509095 8_3:-61331643 Msa1299940:CDS
GTAAGAATGTGGTTTGGAAG+AGG 0.511446 8_3:-61331585 Msa1299940:CDS
GAAGTGACTGGTTCATCTGT+TGG 0.525549 8_3:-61330139 Msa1299940:CDS
ACAAAGAGAAACACTTGGAA+TGG 0.525859 8_3:-61331532 Msa1299940:CDS
ATGCTTGTCTGGGGAGGTGT+TGG 0.529024 8_3:-61330103 Msa1299940:CDS
TCTAGTATTTCGGACATGGT+TGG 0.545589 8_3:+61331720 None:intergenic
TGATGAAGTCTGGTTTGGAT+TGG 0.549707 8_3:+61331852 None:intergenic
GTCCTAGAGTTTGGAGCTGA+AGG 0.555399 8_3:+61331673 None:intergenic
GAAAGAAGAGGACCTTAGAA+TGG 0.557524 8_3:+61331397 None:intergenic
GGGAGGTGTTGGTACTCGCA+TGG 0.557882 8_3:-61330092 Msa1299940:CDS
TGATTCTAGTATTTCGGACA+TGG 0.558688 8_3:+61331716 None:intergenic
CCCCAGACAAGCATGTGAGT+TGG 0.562238 8_3:+61330112 None:intergenic
CCACATTCTTACCAATCCCT+CGG 0.564065 8_3:+61331596 None:intergenic
ACTCACATGCTTGTCTGGGG+AGG 0.571451 8_3:-61330109 Msa1299940:CDS
TTGGTAACAGATAACGAGCT+TGG 0.577020 8_3:-61331624 Msa1299940:CDS
GTGTGTAATGCATGCTACTT+CGG 0.581801 8_3:+61329748 Msa1299930:three_prime_UTR
GACCTTCAGCTCCAAACTCT+AGG 0.585104 8_3:-61331675 Msa1299940:CDS
TGGCAATGAAATTGATTCGT+TGG 0.585470 8_3:+61331740 None:intergenic
AAACCTGTGTATGAAGTGAC+TGG 0.589730 8_3:-61330151 Msa1299940:CDS
TTAGGTTCTACACAAGACTT+GGG 0.594680 8_3:-61330177 Msa1299940:CDS
CCGAGGGATTGGTAAGAATG+TGG 0.599865 8_3:-61331596 Msa1299940:CDS
ATTAGACATGGATATGATTG+TGG 0.601421 8_3:-61331465 Msa1299940:CDS
GGAGCTGTTGCTATTAGACA+TGG 0.604767 8_3:-61331477 Msa1299940:CDS
TAACGAGCTTGGAAAAGCCG+AGG 0.622512 8_3:-61331613 Msa1299940:CDS
GAACCAGTCACTTCATACAC+AGG 0.629180 8_3:+61330148 None:intergenic
AACGAGCTTGGAAAAGCCGA+GGG 0.631401 8_3:-61331612 Msa1299940:CDS
GAAATACTAGAATCATCAAG+AGG 0.638232 8_3:-61331708 Msa1299940:CDS
AAACTACAAAGAGAAACACT+TGG 0.642328 8_3:-61331537 Msa1299940:CDS
CCAACTCACATGCTTGTCTG+GGG 0.646339 8_3:-61330112 Msa1299940:CDS
GTTCTGGCTTAGCTTCATGG+TGG 0.651358 8_3:+61331896 None:intergenic
AGTGACTGGTTCATCTGTTG+GGG 0.651858 8_3:-61330137 Msa1299940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGATGTAAAATGATTT+TGG - chr8_3:61330428-61330447 Msa1299940:intron 15.0%
!! CTGATTCAAAAAAAAAAAAA+AGG - chr8_3:61331207-61331226 Msa1299940:intron 15.0%
!! GTTAACACAATTTAAATAAA+TGG - chr8_3:61331256-61331275 Msa1299940:intron 15.0%
!!! TTTTTTAATAACAGTTGATT+AGG - chr8_3:61331463-61331482 Msa1299940:CDS 15.0%
!!! TAAAAGATGTAAAATGATTT+TGG - chr8_3:61330428-61330447 Msa1299940:intron 15.0%
!! CTGATTCAAAAAAAAAAAAA+AGG - chr8_3:61331207-61331226 Msa1299940:intron 15.0%
!! GTTAACACAATTTAAATAAA+TGG - chr8_3:61331256-61331275 Msa1299940:intron 15.0%
!!! TTTTTTAATAACAGTTGATT+AGG - chr8_3:61331463-61331482 Msa1299940:CDS 15.0%
!! CAATATAAAAGTTAAGGATA+AGG + chr8_3:61330290-61330309 None:intergenic 20.0%
!! AATTTCATTAACCATGAATT+TGG - chr8_3:61331317-61331336 Msa1299940:intron 20.0%
!! TTGAAGAACTTATGATAAAA+TGG - chr8_3:61331598-61331617 Msa1299940:CDS 20.0%
!! AATTATCATGACATACATTT+AGG + chr8_3:61331815-61331834 None:intergenic 20.0%
!! CAATATAAAAGTTAAGGATA+AGG + chr8_3:61330290-61330309 None:intergenic 20.0%
!! AATTTCATTAACCATGAATT+TGG - chr8_3:61331317-61331336 Msa1299940:intron 20.0%
!! TTGAAGAACTTATGATAAAA+TGG - chr8_3:61331598-61331617 Msa1299940:CDS 20.0%
!! AATTATCATGACATACATTT+AGG + chr8_3:61331815-61331834 None:intergenic 20.0%
!! TTTGAATCTGTTCTTTTGAA+GGG + chr8_3:61329879-61329898 Msa1299930:three_prime_UTR 25.0%
!! ATTTGAATCTGTTCTTTTGA+AGG + chr8_3:61329880-61329899 Msa1299930:three_prime_UTR 25.0%
!! TCTTGATGATTCTAGTATTT+CGG + chr8_3:61329951-61329970 Msa1299930:three_prime_UTR 25.0%
!! GAGAAATCAATATTTGGAAT+TGG - chr8_3:61330148-61330167 Msa1299940:CDS 25.0%
!!! TTTGGAATTGGTTTGTATAT+TGG - chr8_3:61330160-61330179 Msa1299940:CDS 25.0%
! ATAAAAGTTAAGGATAAGGT+TGG + chr8_3:61330286-61330305 None:intergenic 25.0%
! TGCAGACAATATAAAAGTTA+AGG + chr8_3:61330296-61330315 None:intergenic 25.0%
!!! GTCATTTTAATAAGAAAGTC+CGG - chr8_3:61330497-61330516 Msa1299940:intron 25.0%
!! TAAGTTCTTTTTGTACATTC+TGG - chr8_3:61330822-61330841 Msa1299940:intron 25.0%
! CAAAAACACAAAAATCAGAA+TGG + chr8_3:61330892-61330911 None:intergenic 25.0%
!!! TTCTGATTTTTGTGTTTTTG+CGG - chr8_3:61330892-61330911 Msa1299940:intron 25.0%
! GTTATAGAATTAGGATTGTT+AGG - chr8_3:61331066-61331085 Msa1299940:intron 25.0%
! TCAGCAAATATTATTAAGCT+AGG + chr8_3:61331191-61331210 None:intergenic 25.0%
! CTTATATATGTTGCATAAGA+TGG - chr8_3:61331665-61331684 Msa1299940:CDS 25.0%
!! TTTGAATCTGTTCTTTTGAA+GGG + chr8_3:61329879-61329898 Msa1299930:three_prime_UTR 25.0%
!! ATTTGAATCTGTTCTTTTGA+AGG + chr8_3:61329880-61329899 Msa1299930:three_prime_UTR 25.0%
!! TCTTGATGATTCTAGTATTT+CGG + chr8_3:61329951-61329970 Msa1299930:three_prime_UTR 25.0%
!! GAGAAATCAATATTTGGAAT+TGG - chr8_3:61330148-61330167 Msa1299940:CDS 25.0%
!!! TTTGGAATTGGTTTGTATAT+TGG - chr8_3:61330160-61330179 Msa1299940:CDS 25.0%
! ATAAAAGTTAAGGATAAGGT+TGG + chr8_3:61330286-61330305 None:intergenic 25.0%
! TGCAGACAATATAAAAGTTA+AGG + chr8_3:61330296-61330315 None:intergenic 25.0%
!!! GTCATTTTAATAAGAAAGTC+CGG - chr8_3:61330497-61330516 Msa1299940:intron 25.0%
!! TAAGTTCTTTTTGTACATTC+TGG - chr8_3:61330822-61330841 Msa1299940:intron 25.0%
! CAAAAACACAAAAATCAGAA+TGG + chr8_3:61330892-61330911 None:intergenic 25.0%
!!! TTCTGATTTTTGTGTTTTTG+CGG - chr8_3:61330892-61330911 Msa1299940:intron 25.0%
! GTTATAGAATTAGGATTGTT+AGG - chr8_3:61331066-61331085 Msa1299940:intron 25.0%
! TCAGCAAATATTATTAAGCT+AGG + chr8_3:61331191-61331210 None:intergenic 25.0%
! CTTATATATGTTGCATAAGA+TGG - chr8_3:61331665-61331684 Msa1299940:CDS 25.0%
! TGGTTTGTAAATTAAGGTTC+TGG + chr8_3:61329781-61329800 Msa1299930:three_prime_UTR 30.0%
! TTGGAATATTTGGTGAAAGA+GGG + chr8_3:61329835-61329854 Msa1299930:three_prime_UTR 30.0%
!! TTGAATCTGTTCTTTTGAAG+GGG + chr8_3:61329878-61329897 Msa1299930:three_prime_UTR 30.0%
GAAATACTAGAATCATCAAG+AGG - chr8_3:61329950-61329969 Msa1299940:intron 30.0%
AAGAGGTAATATTCTTCACT+TGG - chr8_3:61330090-61330109 Msa1299940:CDS 30.0%
AAACTACAAAGAGAAACACT+TGG - chr8_3:61330121-61330140 Msa1299940:CDS 30.0%
GGAATGGAGAAATCAATATT+TGG - chr8_3:61330142-61330161 Msa1299940:CDS 30.0%
ATTAGACATGGATATGATTG+TGG - chr8_3:61330193-61330212 Msa1299940:intron 30.0%
TTCTGATCTTTACCATTCTA+AGG - chr8_3:61330249-61330268 Msa1299940:intron 30.0%
! CATCTTTTATACACAGTAAG+TGG + chr8_3:61330417-61330436 None:intergenic 30.0%
AAATGATTCTGTATGTCCAT+TGG - chr8_3:61330458-61330477 Msa1299940:intron 30.0%
AATGATTCTGTATGTCCATT+GGG - chr8_3:61330459-61330478 Msa1299940:intron 30.0%
! TTTTAATAAGAAAGTCCGGA+AGG - chr8_3:61330501-61330520 Msa1299940:intron 30.0%
TTTAATAAGAAAGTCCGGAA+GGG - chr8_3:61330502-61330521 Msa1299940:intron 30.0%
GTTATTTGGAAAGCTAGAAA+TGG - chr8_3:61330556-61330575 Msa1299940:intron 30.0%
TGGAATGATCTTTAACAAAG+CGG - chr8_3:61330576-61330595 Msa1299940:intron 30.0%
TCCTGTTCTGTTATAGAATT+AGG - chr8_3:61331057-61331076 Msa1299940:intron 30.0%
TCCTAATTCTATAACAGAAC+AGG + chr8_3:61331061-61331080 None:intergenic 30.0%
ATAGAATTAGGATTGTTAGG+AGG - chr8_3:61331069-61331088 Msa1299940:intron 30.0%
TTTGAACACTTACTATGAGA+CGG - chr8_3:61331382-61331401 Msa1299940:intron 30.0%
TATCATAAGTTCTTCAACAC+TGG + chr8_3:61331595-61331614 None:intergenic 30.0%
! AATAGACAAGTTTTACAGAC+AGG + chr8_3:61331699-61331718 None:intergenic 30.0%
! TGGTTTGTAAATTAAGGTTC+TGG + chr8_3:61329781-61329800 Msa1299930:three_prime_UTR 30.0%
! TTGGAATATTTGGTGAAAGA+GGG + chr8_3:61329835-61329854 Msa1299930:three_prime_UTR 30.0%
!! TTGAATCTGTTCTTTTGAAG+GGG + chr8_3:61329878-61329897 Msa1299930:three_prime_UTR 30.0%
GAAATACTAGAATCATCAAG+AGG - chr8_3:61329950-61329969 Msa1299940:intron 30.0%
AAGAGGTAATATTCTTCACT+TGG - chr8_3:61330090-61330109 Msa1299940:CDS 30.0%
AAACTACAAAGAGAAACACT+TGG - chr8_3:61330121-61330140 Msa1299940:CDS 30.0%
GGAATGGAGAAATCAATATT+TGG - chr8_3:61330142-61330161 Msa1299940:CDS 30.0%
ATTAGACATGGATATGATTG+TGG - chr8_3:61330193-61330212 Msa1299940:intron 30.0%
TTCTGATCTTTACCATTCTA+AGG - chr8_3:61330249-61330268 Msa1299940:intron 30.0%
! CATCTTTTATACACAGTAAG+TGG + chr8_3:61330417-61330436 None:intergenic 30.0%
AAATGATTCTGTATGTCCAT+TGG - chr8_3:61330458-61330477 Msa1299940:intron 30.0%
AATGATTCTGTATGTCCATT+GGG - chr8_3:61330459-61330478 Msa1299940:intron 30.0%
! TTTTAATAAGAAAGTCCGGA+AGG - chr8_3:61330501-61330520 Msa1299940:intron 30.0%
TTTAATAAGAAAGTCCGGAA+GGG - chr8_3:61330502-61330521 Msa1299940:intron 30.0%
GTTATTTGGAAAGCTAGAAA+TGG - chr8_3:61330556-61330575 Msa1299940:intron 30.0%
TGGAATGATCTTTAACAAAG+CGG - chr8_3:61330576-61330595 Msa1299940:intron 30.0%
TCCTGTTCTGTTATAGAATT+AGG - chr8_3:61331057-61331076 Msa1299940:intron 30.0%
TCCTAATTCTATAACAGAAC+AGG + chr8_3:61331061-61331080 None:intergenic 30.0%
ATAGAATTAGGATTGTTAGG+AGG - chr8_3:61331069-61331088 Msa1299940:intron 30.0%
TTTGAACACTTACTATGAGA+CGG - chr8_3:61331382-61331401 Msa1299940:intron 30.0%
TATCATAAGTTCTTCAACAC+TGG + chr8_3:61331595-61331614 None:intergenic 30.0%
! AATAGACAAGTTTTACAGAC+AGG + chr8_3:61331699-61331718 None:intergenic 30.0%
!! GTGGGTTGGTTTGTAAATTA+AGG + chr8_3:61329787-61329806 Msa1299930:three_prime_UTR 35.0%
! GTTGGAATATTTGGTGAAAG+AGG + chr8_3:61329836-61329855 Msa1299930:three_prime_UTR 35.0%
!! TGGCAATGAAATTGATTCGT+TGG + chr8_3:61329921-61329940 Msa1299930:three_prime_UTR 35.0%
TGATTCTAGTATTTCGGACA+TGG + chr8_3:61329945-61329964 Msa1299930:three_prime_UTR 35.0%
! CTTGCTGTGATTCTGAAAAA+GGG + chr8_3:61330010-61330029 None:intergenic 35.0%
ACAAAGAGAAACACTTGGAA+TGG - chr8_3:61330126-61330145 Msa1299940:CDS 35.0%
TCTTTAACAAAGCGGTTGTA+AGG - chr8_3:61330584-61330603 Msa1299940:intron 35.0%
TTATCTCATCAAACACTCCA+CGG + chr8_3:61330710-61330729 None:intergenic 35.0%
ACAGAAGAAGAAAACCAGTA+GGG + chr8_3:61330783-61330802 None:intergenic 35.0%
AACAGAAGAAGAAAACCAGT+AGG + chr8_3:61330784-61330803 None:intergenic 35.0%
! TCCTTTTCCTTTTTTTCCAG+CGG - chr8_3:61330959-61330978 Msa1299940:intron 35.0%
! GGTTTAGGCACTTTTCATTT+TGG - chr8_3:61331019-61331038 Msa1299940:intron 35.0%
ATTAACCATGAATTTGGACG+TGG - chr8_3:61331323-61331342 Msa1299940:intron 35.0%
GTTTGAACACCTGCAAATTA+TGG + chr8_3:61331353-61331372 None:intergenic 35.0%
ATTAGGTTCTACACAAGACT+TGG - chr8_3:61331480-61331499 Msa1299940:CDS 35.0%
TTAGGTTCTACACAAGACTT+GGG - chr8_3:61331481-61331500 Msa1299940:CDS 35.0%
! TCATGACATACATTTAGGAC+AGG + chr8_3:61331810-61331829 None:intergenic 35.0%
!! GTGGGTTGGTTTGTAAATTA+AGG + chr8_3:61329787-61329806 Msa1299930:three_prime_UTR 35.0%
! GTTGGAATATTTGGTGAAAG+AGG + chr8_3:61329836-61329855 Msa1299930:three_prime_UTR 35.0%
!! TGGCAATGAAATTGATTCGT+TGG + chr8_3:61329921-61329940 Msa1299930:three_prime_UTR 35.0%
TGATTCTAGTATTTCGGACA+TGG + chr8_3:61329945-61329964 Msa1299930:three_prime_UTR 35.0%
! CTTGCTGTGATTCTGAAAAA+GGG + chr8_3:61330010-61330029 None:intergenic 35.0%
ACAAAGAGAAACACTTGGAA+TGG - chr8_3:61330126-61330145 Msa1299940:CDS 35.0%
TCTTTAACAAAGCGGTTGTA+AGG - chr8_3:61330584-61330603 Msa1299940:intron 35.0%
TTATCTCATCAAACACTCCA+CGG + chr8_3:61330710-61330729 None:intergenic 35.0%
ACAGAAGAAGAAAACCAGTA+GGG + chr8_3:61330783-61330802 None:intergenic 35.0%
AACAGAAGAAGAAAACCAGT+AGG + chr8_3:61330784-61330803 None:intergenic 35.0%
! TCCTTTTCCTTTTTTTCCAG+CGG - chr8_3:61330959-61330978 Msa1299940:intron 35.0%
! GGTTTAGGCACTTTTCATTT+TGG - chr8_3:61331019-61331038 Msa1299940:intron 35.0%
ATTAACCATGAATTTGGACG+TGG - chr8_3:61331323-61331342 Msa1299940:intron 35.0%
GTTTGAACACCTGCAAATTA+TGG + chr8_3:61331353-61331372 None:intergenic 35.0%
ATTAGGTTCTACACAAGACT+TGG - chr8_3:61331480-61331499 Msa1299940:CDS 35.0%
TTAGGTTCTACACAAGACTT+GGG - chr8_3:61331481-61331500 Msa1299940:CDS 35.0%
! TCATGACATACATTTAGGAC+AGG + chr8_3:61331810-61331829 None:intergenic 35.0%
!! TGATGAAGTCTGGTTTGGAT+TGG + chr8_3:61329809-61329828 Msa1299930:three_prime_UTR 40.0%
AGATGGGAGGTTGGAATATT+TGG + chr8_3:61329845-61329864 Msa1299930:three_prime_UTR 40.0%
!! AATCTGTTCTTTTGAAGGGG+AGG + chr8_3:61329875-61329894 Msa1299930:three_prime_UTR 40.0%
TCTAGTATTTCGGACATGGT+TGG + chr8_3:61329941-61329960 Msa1299930:three_prime_UTR 40.0%
TGAAAAAGGGTCCTAGAGTT+TGG + chr8_3:61329997-61330016 None:intergenic 40.0%
! CCTTGCTGTGATTCTGAAAA+AGG + chr8_3:61330011-61330030 None:intergenic 40.0%
!!! CCTTTTTCAGAATCACAGCA+AGG - chr8_3:61330008-61330027 Msa1299940:intron 40.0%
! TTGGTAACAGATAACGAGCT+TGG - chr8_3:61330034-61330053 Msa1299940:intron 40.0%
! GGATTGGTAAGAATGTGGTT+TGG - chr8_3:61330067-61330086 Msa1299940:CDS 40.0%
! GTAAGAATGTGGTTTGGAAG+AGG - chr8_3:61330073-61330092 Msa1299940:CDS 40.0%
GAAAGAAGAGGACCTTAGAA+TGG + chr8_3:61330264-61330283 None:intergenic 40.0%
AGGATAAGGTTGGAAAGAAG+AGG + chr8_3:61330276-61330295 None:intergenic 40.0%
TGTATGTCCATTGGGAATGT+TGG - chr8_3:61330467-61330486 Msa1299940:intron 40.0%
GTATGTCCATTGGGAATGTT+GGG - chr8_3:61330468-61330487 Msa1299940:intron 40.0%
! AAGCTGCGATTTGGGTTATT+TGG - chr8_3:61330542-61330561 Msa1299940:intron 40.0%
TTAACAAAGCGGTTGTAAGG+TGG - chr8_3:61330587-61330606 Msa1299940:intron 40.0%
TAACAAAGCGGTTGTAAGGT+GGG - chr8_3:61330588-61330607 Msa1299940:intron 40.0%
GGAATTAGTGGAAGAGGTTA+AGG - chr8_3:61330612-61330631 Msa1299940:intron 40.0%
GTTAAACCGCTTCAATACTC+CGG - chr8_3:61330654-61330673 Msa1299940:intron 40.0%
TATCTCATCAAACACTCCAC+GGG + chr8_3:61330709-61330728 None:intergenic 40.0%
!! CATTCTGGCTTTCTGTTCTT+CGG - chr8_3:61330837-61330856 Msa1299940:intron 40.0%
!! TTTGCGGCTTTGTTTACTTC+TGG - chr8_3:61330908-61330927 Msa1299940:intron 40.0%
!! GGCTTTGTTTACTTCTGGTT+AGG - chr8_3:61330913-61330932 Msa1299940:intron 40.0%
ACCGCTGGAAAAAAAGGAAA+AGG + chr8_3:61330963-61330982 None:intergenic 40.0%
! TTTTCCTTTTTTTCCAGCGG+TGG - chr8_3:61330962-61330981 Msa1299940:intron 40.0%
!!! GGTTTGTTTTGTAGGCAGTT+GGG - chr8_3:61330996-61331015 Msa1299940:intron 40.0%
!!! GTTTGTTTTGTAGGCAGTTG+GGG - chr8_3:61330997-61331016 Msa1299940:intron 40.0%
!!! TTTGTTTTGTAGGCAGTTGG+GGG - chr8_3:61330998-61331017 Msa1299940:intron 40.0%
! GATTATGTGCCTTTGTTTGC+AGG - chr8_3:61331114-61331133 Msa1299940:intron 40.0%
! GTACTCTTTTTCCTCCTTAG+CGG - chr8_3:61331144-61331163 Msa1299940:intron 40.0%
! TACTCTTTTTCCTCCTTAGC+GGG - chr8_3:61331145-61331164 Msa1299940:intron 40.0%
GGTTAATTGCGTTCAGTAGA+TGG - chr8_3:61331277-61331296 Msa1299940:intron 40.0%
GTTAACCACGTCCAAATTCA+TGG + chr8_3:61331331-61331350 None:intergenic 40.0%
! CGTGGTTAACCATAATTTGC+AGG - chr8_3:61331341-61331360 Msa1299940:intron 40.0%
AACACTTACTATGAGACGGA+GGG - chr8_3:61331386-61331405 Msa1299940:intron 40.0%
GGAGTAGTAAGATGGTACAT+GGG - chr8_3:61331407-61331426 Msa1299940:intron 40.0%
AAACCTGTGTATGAAGTGAC+TGG - chr8_3:61331507-61331526 Msa1299940:CDS 40.0%
! AAGTGACTGGTTCATCTGTT+GGG - chr8_3:61331520-61331539 Msa1299940:CDS 40.0%
! AGATCTCTTCTAGCTAGCAA+AGG - chr8_3:61331768-61331787 Msa1299940:CDS 40.0%
!! TGATGAAGTCTGGTTTGGAT+TGG + chr8_3:61329809-61329828 Msa1299930:three_prime_UTR 40.0%
AGATGGGAGGTTGGAATATT+TGG + chr8_3:61329845-61329864 Msa1299930:three_prime_UTR 40.0%
!! AATCTGTTCTTTTGAAGGGG+AGG + chr8_3:61329875-61329894 Msa1299930:three_prime_UTR 40.0%
TCTAGTATTTCGGACATGGT+TGG + chr8_3:61329941-61329960 Msa1299930:three_prime_UTR 40.0%
TGAAAAAGGGTCCTAGAGTT+TGG + chr8_3:61329997-61330016 None:intergenic 40.0%
! CCTTGCTGTGATTCTGAAAA+AGG + chr8_3:61330011-61330030 None:intergenic 40.0%
!!! CCTTTTTCAGAATCACAGCA+AGG - chr8_3:61330008-61330027 Msa1299940:intron 40.0%
! TTGGTAACAGATAACGAGCT+TGG - chr8_3:61330034-61330053 Msa1299940:intron 40.0%
! GGATTGGTAAGAATGTGGTT+TGG - chr8_3:61330067-61330086 Msa1299940:CDS 40.0%
! GTAAGAATGTGGTTTGGAAG+AGG - chr8_3:61330073-61330092 Msa1299940:CDS 40.0%
GAAAGAAGAGGACCTTAGAA+TGG + chr8_3:61330264-61330283 None:intergenic 40.0%
AGGATAAGGTTGGAAAGAAG+AGG + chr8_3:61330276-61330295 None:intergenic 40.0%
TGTATGTCCATTGGGAATGT+TGG - chr8_3:61330467-61330486 Msa1299940:intron 40.0%
GTATGTCCATTGGGAATGTT+GGG - chr8_3:61330468-61330487 Msa1299940:intron 40.0%
! AAGCTGCGATTTGGGTTATT+TGG - chr8_3:61330542-61330561 Msa1299940:intron 40.0%
TTAACAAAGCGGTTGTAAGG+TGG - chr8_3:61330587-61330606 Msa1299940:intron 40.0%
TAACAAAGCGGTTGTAAGGT+GGG - chr8_3:61330588-61330607 Msa1299940:intron 40.0%
GGAATTAGTGGAAGAGGTTA+AGG - chr8_3:61330612-61330631 Msa1299940:intron 40.0%
GTTAAACCGCTTCAATACTC+CGG - chr8_3:61330654-61330673 Msa1299940:intron 40.0%
TATCTCATCAAACACTCCAC+GGG + chr8_3:61330709-61330728 None:intergenic 40.0%
!! CATTCTGGCTTTCTGTTCTT+CGG - chr8_3:61330837-61330856 Msa1299940:intron 40.0%
!! TTTGCGGCTTTGTTTACTTC+TGG - chr8_3:61330908-61330927 Msa1299940:intron 40.0%
!! GGCTTTGTTTACTTCTGGTT+AGG - chr8_3:61330913-61330932 Msa1299940:intron 40.0%
ACCGCTGGAAAAAAAGGAAA+AGG + chr8_3:61330963-61330982 None:intergenic 40.0%
! TTTTCCTTTTTTTCCAGCGG+TGG - chr8_3:61330962-61330981 Msa1299940:intron 40.0%
!!! GGTTTGTTTTGTAGGCAGTT+GGG - chr8_3:61330996-61331015 Msa1299940:intron 40.0%
!!! GTTTGTTTTGTAGGCAGTTG+GGG - chr8_3:61330997-61331016 Msa1299940:intron 40.0%
!!! TTTGTTTTGTAGGCAGTTGG+GGG - chr8_3:61330998-61331017 Msa1299940:intron 40.0%
! GATTATGTGCCTTTGTTTGC+AGG - chr8_3:61331114-61331133 Msa1299940:intron 40.0%
! GTACTCTTTTTCCTCCTTAG+CGG - chr8_3:61331144-61331163 Msa1299940:intron 40.0%
! TACTCTTTTTCCTCCTTAGC+GGG - chr8_3:61331145-61331164 Msa1299940:intron 40.0%
GGTTAATTGCGTTCAGTAGA+TGG - chr8_3:61331277-61331296 Msa1299940:intron 40.0%
GTTAACCACGTCCAAATTCA+TGG + chr8_3:61331331-61331350 None:intergenic 40.0%
! CGTGGTTAACCATAATTTGC+AGG - chr8_3:61331341-61331360 Msa1299940:intron 40.0%
AACACTTACTATGAGACGGA+GGG - chr8_3:61331386-61331405 Msa1299940:intron 40.0%
GGAGTAGTAAGATGGTACAT+GGG - chr8_3:61331407-61331426 Msa1299940:intron 40.0%
AAACCTGTGTATGAAGTGAC+TGG - chr8_3:61331507-61331526 Msa1299940:CDS 40.0%
! AAGTGACTGGTTCATCTGTT+GGG - chr8_3:61331520-61331539 Msa1299940:CDS 40.0%
! AGATCTCTTCTAGCTAGCAA+AGG - chr8_3:61331768-61331787 Msa1299940:CDS 40.0%
!! AAGGTTCTGGCTTAGCTTCA+TGG + chr8_3:61329768-61329787 Msa1299930:three_prime_UTR 45.0%
!! GAAGTCTGGTTTGGATTGGT+GGG + chr8_3:61329805-61329824 Msa1299930:three_prime_UTR 45.0%
!! TGAAGTCTGGTTTGGATTGG+TGG + chr8_3:61329806-61329825 Msa1299930:three_prime_UTR 45.0%
GGAGATGATGAAGTCTGGTT+TGG + chr8_3:61329814-61329833 Msa1299930:three_prime_UTR 45.0%
AAGAGGGAGATGATGAAGTC+TGG + chr8_3:61329819-61329838 Msa1299930:three_prime_UTR 45.0%
!! GTTCTTTTGAAGGGGAGGTA+GGG + chr8_3:61329870-61329889 Msa1299930:three_prime_UTR 45.0%
!! TGTTCTTTTGAAGGGGAGGT+AGG + chr8_3:61329871-61329890 Msa1299930:three_prime_UTR 45.0%
CCACATTCTTACCAATCCCT+CGG + chr8_3:61330065-61330084 None:intergenic 45.0%
! GGAGCTGTTGCTATTAGACA+TGG - chr8_3:61330181-61330200 Msa1299940:CDS 45.0%
AAATCATCCGCAATCCCTTC+CGG + chr8_3:61330519-61330538 None:intergenic 45.0%
! TGATTTGGCAAGCTGCGATT+TGG - chr8_3:61330533-61330552 Msa1299940:intron 45.0%
GATTTGGCAAGCTGCGATTT+GGG - chr8_3:61330534-61330553 Msa1299940:intron 45.0%
TGTAAGGTGGGAGGAATTAG+TGG - chr8_3:61330600-61330619 Msa1299940:intron 45.0%
AAGAGGTTAAGGTGATGTCG+TGG - chr8_3:61330623-61330642 Msa1299940:intron 45.0%
CATTCGTAGAACATGCAAGC+CGG + chr8_3:61330676-61330695 None:intergenic 45.0%
GCATGTTCTACGAATGGAGT+TGG - chr8_3:61330680-61330699 Msa1299940:intron 45.0%
CTGCTGCTGTCTGTTTGTTT+GGG - chr8_3:61330733-61330752 Msa1299940:intron 45.0%
TGCTGCTGTCTGTTTGTTTG+GGG - chr8_3:61330734-61330753 Msa1299940:intron 45.0%
TTCTTCTTCTGTTCCTGCTG+CGG - chr8_3:61330791-61330810 Msa1299940:intron 45.0%
TCTGTTCTTCGGTTGACAGT+AGG - chr8_3:61330848-61330867 Msa1299940:intron 45.0%
CTGTTCTTCGGTTGACAGTA+GGG - chr8_3:61330849-61330868 Msa1299940:intron 45.0%
!!! TGCTGGAGGGTTTGTTTTGT+AGG - chr8_3:61330988-61331007 Msa1299940:intron 45.0%
!!! GGGTTTGTTTTGTAGGCAGT+TGG - chr8_3:61330995-61331014 Msa1299940:intron 45.0%
!! ACAAGAGTGCCTGCAAACAA+AGG + chr8_3:61331126-61331145 None:intergenic 45.0%
GAACACTTACTATGAGACGG+AGG - chr8_3:61331385-61331404 Msa1299940:intron 45.0%
GGGAGTAGTAAGATGGTACA+TGG - chr8_3:61331406-61331425 Msa1299940:intron 45.0%
GAACCAGTCACTTCATACAC+AGG + chr8_3:61331513-61331532 None:intergenic 45.0%
! GAAGTGACTGGTTCATCTGT+TGG - chr8_3:61331519-61331538 Msa1299940:CDS 45.0%
! AGTGACTGGTTCATCTGTTG+GGG - chr8_3:61331521-61331540 Msa1299940:CDS 45.0%
ATCCAACTCACATGCTTGTC+TGG - chr8_3:61331544-61331563 Msa1299940:CDS 45.0%
TCCAACTCACATGCTTGTCT+GGG - chr8_3:61331545-61331564 Msa1299940:CDS 45.0%
!! AAGGTTCTGGCTTAGCTTCA+TGG + chr8_3:61329768-61329787 Msa1299930:three_prime_UTR 45.0%
!! GAAGTCTGGTTTGGATTGGT+GGG + chr8_3:61329805-61329824 Msa1299930:three_prime_UTR 45.0%
!! TGAAGTCTGGTTTGGATTGG+TGG + chr8_3:61329806-61329825 Msa1299930:three_prime_UTR 45.0%
GGAGATGATGAAGTCTGGTT+TGG + chr8_3:61329814-61329833 Msa1299930:three_prime_UTR 45.0%
AAGAGGGAGATGATGAAGTC+TGG + chr8_3:61329819-61329838 Msa1299930:three_prime_UTR 45.0%
!! GTTCTTTTGAAGGGGAGGTA+GGG + chr8_3:61329870-61329889 Msa1299930:three_prime_UTR 45.0%
!! TGTTCTTTTGAAGGGGAGGT+AGG + chr8_3:61329871-61329890 Msa1299930:three_prime_UTR 45.0%
CCACATTCTTACCAATCCCT+CGG + chr8_3:61330065-61330084 None:intergenic 45.0%
! GGAGCTGTTGCTATTAGACA+TGG - chr8_3:61330181-61330200 Msa1299940:CDS 45.0%
AAATCATCCGCAATCCCTTC+CGG + chr8_3:61330519-61330538 None:intergenic 45.0%
! TGATTTGGCAAGCTGCGATT+TGG - chr8_3:61330533-61330552 Msa1299940:intron 45.0%
GATTTGGCAAGCTGCGATTT+GGG - chr8_3:61330534-61330553 Msa1299940:intron 45.0%
TGTAAGGTGGGAGGAATTAG+TGG - chr8_3:61330600-61330619 Msa1299940:intron 45.0%
AAGAGGTTAAGGTGATGTCG+TGG - chr8_3:61330623-61330642 Msa1299940:intron 45.0%
CATTCGTAGAACATGCAAGC+CGG + chr8_3:61330676-61330695 None:intergenic 45.0%
GCATGTTCTACGAATGGAGT+TGG - chr8_3:61330680-61330699 Msa1299940:intron 45.0%
CTGCTGCTGTCTGTTTGTTT+GGG - chr8_3:61330733-61330752 Msa1299940:intron 45.0%
TGCTGCTGTCTGTTTGTTTG+GGG - chr8_3:61330734-61330753 Msa1299940:intron 45.0%
TTCTTCTTCTGTTCCTGCTG+CGG - chr8_3:61330791-61330810 Msa1299940:intron 45.0%
TCTGTTCTTCGGTTGACAGT+AGG - chr8_3:61330848-61330867 Msa1299940:intron 45.0%
CTGTTCTTCGGTTGACAGTA+GGG - chr8_3:61330849-61330868 Msa1299940:intron 45.0%
!!! TGCTGGAGGGTTTGTTTTGT+AGG - chr8_3:61330988-61331007 Msa1299940:intron 45.0%
!!! GGGTTTGTTTTGTAGGCAGT+TGG - chr8_3:61330995-61331014 Msa1299940:intron 45.0%
!! ACAAGAGTGCCTGCAAACAA+AGG + chr8_3:61331126-61331145 None:intergenic 45.0%
GAACACTTACTATGAGACGG+AGG - chr8_3:61331385-61331404 Msa1299940:intron 45.0%
GGGAGTAGTAAGATGGTACA+TGG - chr8_3:61331406-61331425 Msa1299940:intron 45.0%
GAACCAGTCACTTCATACAC+AGG + chr8_3:61331513-61331532 None:intergenic 45.0%
! GAAGTGACTGGTTCATCTGT+TGG - chr8_3:61331519-61331538 Msa1299940:CDS 45.0%
! AGTGACTGGTTCATCTGTTG+GGG - chr8_3:61331521-61331540 Msa1299940:CDS 45.0%
ATCCAACTCACATGCTTGTC+TGG - chr8_3:61331544-61331563 Msa1299940:CDS 45.0%
TCCAACTCACATGCTTGTCT+GGG - chr8_3:61331545-61331564 Msa1299940:CDS 45.0%
!!! CTTTTATTATAATTTTAAAA+TGG - chr8_3:61331234-61331253 Msa1299940:intron 5.0%
!!! CTTTTATTATAATTTTAAAA+TGG - chr8_3:61331234-61331253 Msa1299940:intron 5.0%
!! GTTCTGGCTTAGCTTCATGG+TGG + chr8_3:61329765-61329784 Msa1299930:three_prime_UTR 50.0%
!! TCTGGTTTGGATTGGTGGGT+TGG + chr8_3:61329801-61329820 Msa1299930:three_prime_UTR 50.0%
GACCTTCAGCTCCAAACTCT+AGG - chr8_3:61329983-61330002 Msa1299940:intron 50.0%
! GTCCTAGAGTTTGGAGCTGA+AGG + chr8_3:61329988-61330007 None:intergenic 50.0%
CAGAATCACAGCAAGGAGCT+TGG - chr8_3:61330015-61330034 Msa1299940:intron 50.0%
TAACGAGCTTGGAAAAGCCG+AGG - chr8_3:61330045-61330064 Msa1299940:CDS 50.0%
AACGAGCTTGGAAAAGCCGA+GGG - chr8_3:61330046-61330065 Msa1299940:CDS 50.0%
! CCGAGGGATTGGTAAGAATG+TGG - chr8_3:61330062-61330081 Msa1299940:CDS 50.0%
TGTCCATTGGGAATGTTGGG+TGG - chr8_3:61330471-61330490 Msa1299940:intron 50.0%
GTCCATTGGGAATGTTGGGT+GGG - chr8_3:61330472-61330491 Msa1299940:intron 50.0%
AGAAAGTCCGGAAGGGATTG+CGG - chr8_3:61330509-61330528 Msa1299940:intron 50.0%
GGAAGGGATTGCGGATGATT+TGG - chr8_3:61330518-61330537 Msa1299940:intron 50.0%
GTGGGAGGAATTAGTGGAAG+AGG - chr8_3:61330606-61330625 Msa1299940:intron 50.0%
AGGTTAAGGTGATGTCGTGG+AGG - chr8_3:61330626-61330645 Msa1299940:intron 50.0%
TTAAGGTGATGTCGTGGAGG+TGG - chr8_3:61330629-61330648 Msa1299940:intron 50.0%
!! TGCAAGCCGGAGTATTGAAG+CGG + chr8_3:61330663-61330682 None:intergenic 50.0%
CGGCTTGCATGTTCTACGAA+TGG - chr8_3:61330674-61330693 Msa1299940:intron 50.0%
GCTGCTGCTGTCTGTTTGTT+TGG - chr8_3:61330732-61330751 Msa1299940:intron 50.0%
! GTTTGGGGTAGAATTGCAGC+TGG - chr8_3:61330749-61330768 Msa1299940:intron 50.0%
TCTGGTTAGGCTACTGTTGC+TGG - chr8_3:61330926-61330945 Msa1299940:intron 50.0%
ACAGCCACCGCTGGAAAAAA+AGG + chr8_3:61330969-61330988 None:intergenic 50.0%
TTGTAGGCAGTTGGGGGTTT+AGG - chr8_3:61331004-61331023 Msa1299940:intron 50.0%
AAGACGCACTAAACCCGCTA+AGG + chr8_3:61331161-61331180 None:intergenic 50.0%
AGACGGAGGGAGTAGTAAGA+TGG - chr8_3:61331399-61331418 Msa1299940:intron 50.0%
CCAACTCACATGCTTGTCTG+GGG - chr8_3:61331546-61331565 Msa1299940:CDS 50.0%
AAAGTGTGATCTGCTGCCTC+AGG - chr8_3:61331874-61331893 Msa1299940:CDS 50.0%
CGGTATTTCACGTACACCTG+AGG + chr8_3:61331893-61331912 None:intergenic 50.0%
!! GTTCTGGCTTAGCTTCATGG+TGG + chr8_3:61329765-61329784 Msa1299930:three_prime_UTR 50.0%
!! TCTGGTTTGGATTGGTGGGT+TGG + chr8_3:61329801-61329820 Msa1299930:three_prime_UTR 50.0%
GACCTTCAGCTCCAAACTCT+AGG - chr8_3:61329983-61330002 Msa1299940:intron 50.0%
! GTCCTAGAGTTTGGAGCTGA+AGG + chr8_3:61329988-61330007 None:intergenic 50.0%
CAGAATCACAGCAAGGAGCT+TGG - chr8_3:61330015-61330034 Msa1299940:intron 50.0%
TAACGAGCTTGGAAAAGCCG+AGG - chr8_3:61330045-61330064 Msa1299940:CDS 50.0%
AACGAGCTTGGAAAAGCCGA+GGG - chr8_3:61330046-61330065 Msa1299940:CDS 50.0%
! CCGAGGGATTGGTAAGAATG+TGG - chr8_3:61330062-61330081 Msa1299940:CDS 50.0%
TGTCCATTGGGAATGTTGGG+TGG - chr8_3:61330471-61330490 Msa1299940:intron 50.0%
GTCCATTGGGAATGTTGGGT+GGG - chr8_3:61330472-61330491 Msa1299940:intron 50.0%
AGAAAGTCCGGAAGGGATTG+CGG - chr8_3:61330509-61330528 Msa1299940:intron 50.0%
GGAAGGGATTGCGGATGATT+TGG - chr8_3:61330518-61330537 Msa1299940:intron 50.0%
GTGGGAGGAATTAGTGGAAG+AGG - chr8_3:61330606-61330625 Msa1299940:intron 50.0%
AGGTTAAGGTGATGTCGTGG+AGG - chr8_3:61330626-61330645 Msa1299940:intron 50.0%
TTAAGGTGATGTCGTGGAGG+TGG - chr8_3:61330629-61330648 Msa1299940:intron 50.0%
!! TGCAAGCCGGAGTATTGAAG+CGG + chr8_3:61330663-61330682 None:intergenic 50.0%
CGGCTTGCATGTTCTACGAA+TGG - chr8_3:61330674-61330693 Msa1299940:intron 50.0%
GCTGCTGCTGTCTGTTTGTT+TGG - chr8_3:61330732-61330751 Msa1299940:intron 50.0%
! GTTTGGGGTAGAATTGCAGC+TGG - chr8_3:61330749-61330768 Msa1299940:intron 50.0%
TCTGGTTAGGCTACTGTTGC+TGG - chr8_3:61330926-61330945 Msa1299940:intron 50.0%
ACAGCCACCGCTGGAAAAAA+AGG + chr8_3:61330969-61330988 None:intergenic 50.0%
TTGTAGGCAGTTGGGGGTTT+AGG - chr8_3:61331004-61331023 Msa1299940:intron 50.0%
AAGACGCACTAAACCCGCTA+AGG + chr8_3:61331161-61331180 None:intergenic 50.0%
AGACGGAGGGAGTAGTAAGA+TGG - chr8_3:61331399-61331418 Msa1299940:intron 50.0%
CCAACTCACATGCTTGTCTG+GGG - chr8_3:61331546-61331565 Msa1299940:CDS 50.0%
AAAGTGTGATCTGCTGCCTC+AGG - chr8_3:61331874-61331893 Msa1299940:CDS 50.0%
CGGTATTTCACGTACACCTG+AGG + chr8_3:61331893-61331912 None:intergenic 50.0%
AAGGGGAGGTAGGGAGAGAT+GGG + chr8_3:61329861-61329880 Msa1299930:three_prime_UTR 55.0%
GCTTGGAAAAGCCGAGGGAT+TGG - chr8_3:61330051-61330070 Msa1299940:CDS 55.0%
CTCCCACCCAACATTCCCAA+TGG + chr8_3:61330477-61330496 None:intergenic 55.0%
CATTGGGAATGTTGGGTGGG+AGG - chr8_3:61330475-61330494 Msa1299940:intron 55.0%
CAAAGCGGTTGTAAGGTGGG+AGG - chr8_3:61330591-61330610 Msa1299940:intron 55.0%
GGGTAGAATTGCAGCTGGTG+CGG - chr8_3:61330754-61330773 Msa1299940:intron 55.0%
CTTCTGTTCCTGCTGCGGTT+CGG - chr8_3:61330796-61330815 Msa1299940:intron 55.0%
TTCTGTTCCTGCTGCGGTTC+GGG - chr8_3:61330797-61330816 Msa1299940:intron 55.0%
ACTTAAACCCGAACCGCAGC+AGG + chr8_3:61330807-61330826 None:intergenic 55.0%
ACGCACTAAACCCGCTAAGG+AGG + chr8_3:61331158-61331177 None:intergenic 55.0%
CCCCAGACAAGCATGTGAGT+TGG + chr8_3:61331549-61331568 None:intergenic 55.0%
ACTCACATGCTTGTCTGGGG+AGG - chr8_3:61331549-61331568 Msa1299940:CDS 55.0%
! ATGCTTGTCTGGGGAGGTGT+TGG - chr8_3:61331555-61331574 Msa1299940:CDS 55.0%
AAGGGGAGGTAGGGAGAGAT+GGG + chr8_3:61329861-61329880 Msa1299930:three_prime_UTR 55.0%
GCTTGGAAAAGCCGAGGGAT+TGG - chr8_3:61330051-61330070 Msa1299940:CDS 55.0%
CTCCCACCCAACATTCCCAA+TGG + chr8_3:61330477-61330496 None:intergenic 55.0%
CATTGGGAATGTTGGGTGGG+AGG - chr8_3:61330475-61330494 Msa1299940:intron 55.0%
CAAAGCGGTTGTAAGGTGGG+AGG - chr8_3:61330591-61330610 Msa1299940:intron 55.0%
GGGTAGAATTGCAGCTGGTG+CGG - chr8_3:61330754-61330773 Msa1299940:intron 55.0%
CTTCTGTTCCTGCTGCGGTT+CGG - chr8_3:61330796-61330815 Msa1299940:intron 55.0%
TTCTGTTCCTGCTGCGGTTC+GGG - chr8_3:61330797-61330816 Msa1299940:intron 55.0%
ACTTAAACCCGAACCGCAGC+AGG + chr8_3:61330807-61330826 None:intergenic 55.0%
ACGCACTAAACCCGCTAAGG+AGG + chr8_3:61331158-61331177 None:intergenic 55.0%
CCCCAGACAAGCATGTGAGT+TGG + chr8_3:61331549-61331568 None:intergenic 55.0%
ACTCACATGCTTGTCTGGGG+AGG - chr8_3:61331549-61331568 Msa1299940:CDS 55.0%
! ATGCTTGTCTGGGGAGGTGT+TGG - chr8_3:61331555-61331574 Msa1299940:CDS 55.0%
GGTAGGGAGAGATGGGAGGT+TGG + chr8_3:61329854-61329873 Msa1299930:three_prime_UTR 60.0%
GAAGGGGAGGTAGGGAGAGA+TGG + chr8_3:61329862-61329881 Msa1299930:three_prime_UTR 60.0%
!! CGAATGGAGTTGGTGTCCCG+TGG - chr8_3:61330690-61330709 Msa1299940:intron 60.0%
AGCTGGTGCGGTTTCCCTAC+TGG - chr8_3:61330766-61330785 Msa1299940:intron 60.0%
! TTTTCCAGCGGTGGCTGTGC+TGG - chr8_3:61330971-61330990 Msa1299940:intron 60.0%
!! GGGAGGTGTTGGTACTCGCA+TGG - chr8_3:61331566-61331585 Msa1299940:CDS 60.0%
GGTAGGGAGAGATGGGAGGT+TGG + chr8_3:61329854-61329873 Msa1299930:three_prime_UTR 60.0%
GAAGGGGAGGTAGGGAGAGA+TGG + chr8_3:61329862-61329881 Msa1299930:three_prime_UTR 60.0%
!! CGAATGGAGTTGGTGTCCCG+TGG - chr8_3:61330690-61330709 Msa1299940:intron 60.0%
AGCTGGTGCGGTTTCCCTAC+TGG - chr8_3:61330766-61330785 Msa1299940:intron 60.0%
! TTTTCCAGCGGTGGCTGTGC+TGG - chr8_3:61330971-61330990 Msa1299940:intron 60.0%
!! GGGAGGTGTTGGTACTCGCA+TGG - chr8_3:61331566-61331585 Msa1299940:CDS 60.0%
GGGAGGTAGGGAGAGATGGG+AGG + chr8_3:61329858-61329877 Msa1299930:three_prime_UTR 65.0%
GGGAGGTAGGGAGAGATGGG+AGG + chr8_3:61329858-61329877 Msa1299930:three_prime_UTR 65.0%
TCCAGCGGTGGCTGTGCTGG+AGG - chr8_3:61330974-61330993 Msa1299940:intron 70.0%
CCAGCGGTGGCTGTGCTGGA+GGG - chr8_3:61330975-61330994 Msa1299940:intron 70.0%
TCCAGCGGTGGCTGTGCTGG+AGG - chr8_3:61330974-61330993 Msa1299940:intron 70.0%
CCAGCGGTGGCTGTGCTGGA+GGG - chr8_3:61330975-61330994 Msa1299940:intron 70.0%
CCCTCCAGCACAGCCACCGC+TGG + chr8_3:61330978-61330997 None:intergenic 75.0%
CCCTCCAGCACAGCCACCGC+TGG + chr8_3:61330978-61330997 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61329762 61331918 61329762 ID=Msa1299940;Name=Msa1299940
chr8_3 mRNA 61329762 61331918 61329762 ID=Msa1299940-mRNA-1;Parent=Msa1299940;Name=Msa1299940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=5|0.5|0.33|1|0.5|0.66|3|0|230
chr8_3 exon 61329762 61329784 61329762 ID=Msa1299940-mRNA-1:exon:18047;Parent=Msa1299940-mRNA-1
chr8_3 exon 61330038 61330203 61330038 ID=Msa1299940-mRNA-1:exon:18046;Parent=Msa1299940-mRNA-1
chr8_3 exon 61331410 61331918 61331410 ID=Msa1299940-mRNA-1:exon:18045;Parent=Msa1299940-mRNA-1
chr8_3 five_prime_UTR 61331914 61331918 61331914 ID=Msa1299940-mRNA-1:five_prime_utr;Parent=Msa1299940-mRNA-1
chr8_3 CDS 61331410 61331913 61331410 ID=Msa1299940-mRNA-1:cds;Parent=Msa1299940-mRNA-1
chr8_3 CDS 61330038 61330203 61330038 ID=Msa1299940-mRNA-1:cds;Parent=Msa1299940-mRNA-1
chr8_3 CDS 61329762 61329784 61329762 ID=Msa1299940-mRNA-1:cds;Parent=Msa1299940-mRNA-1
Gene Sequence

>Msa1299940

ATGAAGCTAAGCCAGAACCTTAATTTACAAACCAACCCACCAATCCAAACCAGACTTCATCATCTCCCTCTTTCACCAAATATTCCAACCTCCCATCTCTCCCTACCTCCCCTTCAAAAGAACAGATTCAAATGCATTACTGTAAAAGCTACCAACGAATCAATTTCATTGCCAACCATGTCCGAAATACTAGAATCATCAAGAGGACAAAAACTCGACCTTCAGCTCCAAACTCTAGGACCCTTTTTCAGAATCACAGCAAGGAGCTTGGTAACAGATAACGAGCTTGGAAAAGCCGAGGGATTGGTAAGAATGTGGTTTGGAAGAGGTAATATTCTTCACTTGGATTCTATCAAACTACAAAGAGAAACACTTGGAATGGAGAAATCAATATTTGGAATTGGTTTGTATATTGGAGCTGTTGCTATTAGACATGGATATGATTGTGGTTGTAAATCAGCTCAGTTACTTGCTATCAATGATTCTGATCTTTACCATTCTAAGTTGATTAGGTTCTACACAAGACTTGGGTTTAAACCTGTGTATGAAGTGACTGGTTCATCTGTTGGGGATCCAACTCACATGCTTGTCTGGGGAGGTGTTGGTACTCGCATGGATGCCAGTGTTGAAGAACTTATGATAAAATGGTGTAAAAGATTTAAAAAAACAAGTGTACGTGAAATACCGAAGTAG

Protein sequence

>Msa1299940

MKLSQNLNLQTNPPIQTRLHHLPLSPNIPTSHLSLPPLQKNRFKCITVKATNESISLPTMSEILESSRGQKLDLQLQTLGPFFRITARSLVTDNELGKAEGLVRMWFGRGNILHLDSIKLQRETLGMEKSIFGIGLYIGAVAIRHGYDCGCKSAQLLAINDSDLYHSKLIRFYTRLGFKPVYEVTGSSVGDPTHMLVWGGVGTRMDASVEELMIKWCKRFKKTSVREIPK*