AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575450 MtrunA17_Chr8g0392621 98.852 871 10 0 1 871 22 892 0.0 1774
Msa0575450 MtrunA17_Chr6g0483131 65.873 882 265 16 5 870 8 869 0.0 1071
Msa0575450 MtrunA17_Chr4g0070741 27.386 482 211 19 518 867 593 1067 2.67e-29 125
Msa0575450 MtrunA17_Chr4g0070741 26.216 473 284 18 109 538 57 507 1.71e-22 103
Msa0575450 MtrunA17_Chr2g0300211 34.500 200 123 4 99 293 70 266 1.52e-27 120
Msa0575450 MtrunA17_Chr2g0300211 24.893 466 216 16 519 855 704 1164 4.22e-27 119
Msa0575450 MtrunA17_Chr1g0150791 36.207 174 105 3 105 275 76 246 6.23e-27 118
Msa0575450 MtrunA17_Chr1g0150791 24.681 470 260 14 471 871 621 1065 3.03e-26 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575450 AT1G42550.1 54.886 880 329 26 9 869 12 842 0.0 818
Msa0575450 AT5G20610.1 30.383 339 209 11 87 413 38 361 3.08e-27 119
Msa0575450 AT5G20610.1 33.498 203 126 4 514 709 701 901 1.15e-22 105
Msa0575450 AT5G26160.3 31.925 213 126 6 65 272 32 230 1.13e-24 111
Msa0575450 AT5G26160.3 25.613 367 227 12 517 851 590 942 2.77e-20 97.4
Msa0575450 AT5G26160.2 31.925 213 126 6 65 272 32 230 1.26e-24 111
Msa0575450 AT5G26160.2 25.613 367 227 12 517 851 590 942 2.46e-20 97.4
Msa0575450 AT5G26160.1 31.925 213 126 6 65 272 32 230 1.26e-24 111
Msa0575450 AT5G26160.1 25.613 367 227 12 517 851 590 942 2.46e-20 97.4

Find 225 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACACATCAACAACTAATT+TGG 0.112687 4_1:+79338954 Msa0575450:CDS
TCGTTTCTGCTTGTCATTCT+AGG 0.136217 4_1:-79339615 None:intergenic
CTATGTGGTCATCAACTTTC+TGG 0.179146 4_1:-79339743 None:intergenic
AGTTGTAAAGGTGGAATTTC+AGG 0.189977 4_1:-79340128 None:intergenic
AATATCAGCGTGACTCTTTC+AGG 0.228861 4_1:-79340887 None:intergenic
ACATCTGCATTGCTAGCTTT+GGG 0.242611 4_1:-79340304 None:intergenic
CTGAGCATTGGGATTGTTCT+TGG 0.248888 4_1:-79338671 None:intergenic
TGCAACCGGTTTCTCTTCTA+TGG 0.251241 4_1:-79339865 None:intergenic
GAGGAATCATGAACTGGATT+TGG 0.266943 4_1:-79339711 None:intergenic
GACATCTGCATTGCTAGCTT+TGG 0.273912 4_1:-79340305 None:intergenic
GTTTGACTTGTTTCAGAAAT+TGG 0.274326 4_1:+79340367 Msa0575450:CDS
CACCTCTTTGGTTTCTGTCT+TGG 0.280369 4_1:-79338926 None:intergenic
GCCTTACTCGTGCACCTTGT+TGG 0.294284 4_1:-79339377 None:intergenic
GATGCTCAAGAGCTGGATTT+TGG 0.294691 4_1:+79339303 Msa0575450:CDS
CTTATTCATGCAACACGTTC+TGG 0.320960 4_1:+79340971 Msa0575450:CDS
GGAAAGTGGGAAAGATCTTT+TGG 0.322823 4_1:+79340778 Msa0575450:CDS
CTTGGCTTCCATGAATCCTT+TGG 0.326206 4_1:+79340256 Msa0575450:CDS
ATGCGTGCACTTTCACATAT+TGG 0.332421 4_1:+79339015 Msa0575450:CDS
TGTGTTAACCACCACCTCTT+TGG 0.342541 4_1:-79338938 None:intergenic
GTCCCATGCATTCTTATTTG+TGG 0.349501 4_1:-79341071 None:intergenic
CTTCTTCTCATGATTGTTGT+TGG 0.355425 4_1:-79339241 None:intergenic
TCGGATTCTCCTCCATCTTC+CGG 0.357183 4_1:-79340170 None:intergenic
AACACATCAACAACTAATTT+GGG 0.359751 4_1:+79338955 Msa0575450:CDS
AGAAGCTTCTCTGAAGTAAC+TGG 0.362673 4_1:-79340641 None:intergenic
AGGCACACTGAAGGATGATT+TGG 0.363853 4_1:-79339589 None:intergenic
CTGCTTGTCATTCTAGGACT+AGG 0.364675 4_1:-79339609 None:intergenic
AGAATGAGAAGAAAGGGATT+TGG 0.370371 4_1:+79338980 Msa0575450:CDS
ATGTGGGTGGTTTCAAAGTT+AGG 0.372982 4_1:+79341044 Msa0575450:CDS
TTCTGACCTCGGTAAAGGCT+TGG 0.373813 4_1:+79340202 Msa0575450:CDS
TGAAAGAGTCACGCTGATAT+TGG 0.381885 4_1:+79340889 Msa0575450:CDS
GAAATTCCATCCTCAAGCTT+TGG 0.383944 4_1:-79338904 None:intergenic
TGACAAACTACTCAACTTGC+TGG 0.387407 4_1:-79339544 None:intergenic
GATACGAGCTTCAAGTTATC+TGG 0.390732 4_1:+79339405 Msa0575450:CDS
CTGCTATTCCACTTGAGGAT+TGG 0.394911 4_1:+79340804 Msa0575450:CDS
CTGGACTTTGAATTCTGCAT+TGG 0.395970 4_1:-79339525 None:intergenic
AGGAATCATGAACTGGATTT+GGG 0.397713 4_1:-79339710 None:intergenic
TTTCAGAAATTGGCTGGCAT+TGG 0.398106 4_1:+79340377 Msa0575450:CDS
TCTGACCTCGGTAAAGGCTT+GGG 0.399031 4_1:+79340203 Msa0575450:CDS
CAAATCGTCCATTCCTTGAA+TGG 0.403133 4_1:-79339676 None:intergenic
TTCACAACCTCATCTGCAAC+CGG 0.404254 4_1:-79339879 None:intergenic
ACTTCTTCATATCGTCTCAT+TGG 0.404417 4_1:-79340929 None:intergenic
AACAAGAGATGGCGGATACT+TGG 0.406870 4_1:+79340238 Msa0575450:CDS
TCTTCAAGAATCTGAGCATT+GGG 0.406979 4_1:-79338682 None:intergenic
TGCTGTTGATGCTCAAGAGC+TGG 0.408444 4_1:+79339296 Msa0575450:CDS
ATGCAATGGTTAGTTGCATA+TGG 0.412127 4_1:+79341118 Msa0575450:CDS
AACAACATCCAAAGGATTCA+TGG 0.412903 4_1:-79340264 None:intergenic
AGAGGAAGAGACGGAATCAT+TGG 0.413020 4_1:+79340022 Msa0575450:CDS
TGGGAGAGAATGAGAAGAAA+GGG 0.417323 4_1:+79338974 Msa0575450:CDS
CTTTGTTGTAGCTTAAGCTT+TGG 0.419370 4_1:-79340835 None:intergenic
GGCTAGTCTTAGTCCGTTCA+TGG 0.419473 4_1:-79339100 None:intergenic
CACTTTACAAGCTTGACATC+GGG 0.426837 4_1:-79341253 None:intergenic
ATCGAATGGAGCTTCTTCTT+CGG 0.429366 4_1:-79340729 None:intergenic
GCAACACGTTCTGGCACAAA+GGG 0.435630 4_1:+79340980 Msa0575450:CDS
ACTGCAACTGCAAGTTCTAA+TGG 0.438234 4_1:+79340860 Msa0575450:CDS
TCCTCCATCTTCCGGAGAAT+CGG 0.440582 4_1:-79340162 None:intergenic
GCCAACAAGGTGCACGAGTA+AGG 0.442623 4_1:+79339376 Msa0575450:CDS
ATTGTCATTGTGATCTTCAA+TGG 0.443126 4_1:-79338803 None:intergenic
TGGGAAAAGCAGGGAAGAAA+GGG 0.443601 4_1:+79341143 Msa0575450:CDS
TTGGGAAAAGCAGGGAAGAA+AGG 0.444809 4_1:+79341142 Msa0575450:CDS
GGAGAACTTGTTGTGAAACT+TGG 0.445170 4_1:+79339441 Msa0575450:CDS
TGGTTAGTTGCATATGGGTT+GGG 0.448026 4_1:+79341124 Msa0575450:CDS
TAAGACTAGCCGTTTGCGTT+AGG 0.448434 4_1:+79339112 Msa0575450:CDS
ATGTCAAACATTATCAGTTC+AGG 0.453173 4_1:+79340572 Msa0575450:CDS
AAAAGCTCTTGAGTCTATGA+TGG 0.453235 4_1:+79339968 Msa0575450:CDS
TTTCAGATTGTGGAGAAAGA+TGG 0.453818 4_1:+79339465 Msa0575450:CDS
GACTTGTTTCAGAAATTGGC+TGG 0.453957 4_1:+79340371 Msa0575450:CDS
GCATATGGGTTGGGAAAAGC+AGG 0.456357 4_1:+79341133 Msa0575450:CDS
GGCTTCTGCTATTCCACTTG+AGG 0.457095 4_1:+79340799 Msa0575450:CDS
GCTTTGGTCTTGATCGCCAT+GGG 0.457357 4_1:-79338888 None:intergenic
AACGAATATCAACAGGACTT+TGG 0.460472 4_1:+79340603 Msa0575450:CDS
TGATCTTCAATGGATGGAAC+AGG 0.463470 4_1:-79338793 None:intergenic
AGCCGTTTGCGTTAGGAAGA+AGG 0.466046 4_1:+79339119 Msa0575450:CDS
ATTCCACCTTTACAACTTGA+AGG 0.467961 4_1:+79340134 Msa0575450:CDS
CAGATTGTGGAGAAAGATGG+AGG 0.468329 4_1:+79339468 Msa0575450:CDS
TTCTTCAAGAATCTGAGCAT+TGG 0.469470 4_1:-79338683 None:intergenic
TTGTTCTTGGCATCTGCCAT+TGG 0.473010 4_1:-79338658 None:intergenic
CTGCACTCAGCTCAAAGAAA+GGG 0.475554 4_1:+79340756 Msa0575450:CDS
GGTAGTTGATAAAGGGATTG+AGG 0.475867 4_1:+79339800 Msa0575450:CDS
AGCTCAAAGAAAGGGGAAAG+TGG 0.476835 4_1:+79340764 Msa0575450:CDS
TTCCTTCTTCCTAACGCAAA+CGG 0.477467 4_1:-79339121 None:intergenic
TATCTTTCTGACCTCGGTAA+AGG 0.481608 4_1:+79340197 Msa0575450:CDS
GAAGAAGAGGAATCATGAAC+TGG 0.483448 4_1:-79339717 None:intergenic
AGCTTTGGTCTTGATCGCCA+TGG 0.485605 4_1:-79338889 None:intergenic
CTTGACATCGGGATTTCTCA+TGG 0.485916 4_1:-79341242 None:intergenic
AGGAGAGAACGAATATCAAC+AGG 0.488196 4_1:+79340596 Msa0575450:CDS
TTGGGAGAGAATGAGAAGAA+AGG 0.488412 4_1:+79338973 Msa0575450:CDS
TGAAGGGCATGCCGATTCTC+CGG 0.490624 4_1:+79340151 Msa0575450:CDS
AGAAGAAAGGGATTTGGAAG+TGG 0.490924 4_1:+79338986 Msa0575450:CDS
TAATAATGCAATGAAAATAG+AGG 0.491030 4_1:+79340004 Msa0575450:CDS
TTATCAACTACCTCAAAATC+CGG 0.493481 4_1:-79339789 None:intergenic
GAAGGTGGCAGTGCCATTCA+AGG 0.493689 4_1:+79339663 Msa0575450:CDS
GTCTCATTGGATCCCGCAGT+TGG 0.493983 4_1:-79340916 None:intergenic
AGAAACTATGCGGGCAGCGC+TGG 0.502243 4_1:-79340537 None:intergenic
GAATCCTTTGGATGTTGTTG+TGG 0.502472 4_1:+79340268 Msa0575450:CDS
TCATGCGATGCCAACACAAA+AGG 0.503833 4_1:-79340332 None:intergenic
CTGTTTGTTCTCTGTTGAAG+TGG 0.506284 4_1:+79339053 Msa0575450:CDS
CAAAGGGACAAGACCTGCTA+TGG 0.506660 4_1:+79341179 Msa0575450:CDS
CATCTGCATTGCTAGCTTTG+GGG 0.507161 4_1:-79340303 None:intergenic
ATGAGACGATATGAAGAAGT+TGG 0.507288 4_1:+79340932 Msa0575450:CDS
GGGAAGAAGACATTGACAAA+GGG 0.509402 4_1:+79341163 Msa0575450:CDS
AGGGATTGAGGTTCAAGAGA+AGG 0.509466 4_1:+79339812 Msa0575450:CDS
CTTAGTCCGTTCATGGAAGA+AGG 0.510345 4_1:-79339093 None:intergenic
TAAAACCATAGAAGAGAAAC+CGG 0.511009 4_1:+79339860 Msa0575450:CDS
AAACAAGTCAAACCCACTTA+CGG 0.513728 4_1:-79340357 None:intergenic
GAGTTGTTCGTGGCAAAACA+AGG 0.514347 4_1:-79338771 None:intergenic
GTCGCATGTCCTTGTCCCCA+TGG 0.514497 4_1:+79338872 Msa0575450:CDS
TCTGCACTCAGCTCAAAGAA+AGG 0.515153 4_1:+79340755 Msa0575450:CDS
TTTCCCATCAGTTCATCTAT+CGG 0.516995 4_1:-79340440 None:intergenic
TTTCAATGCCTCAACTGCCA+TGG 0.518234 4_1:-79340690 None:intergenic
GAGTATTTCGTCACGGATCG+TGG 0.521965 4_1:+79341201 Msa0575450:CDS
CAGTTCATCTATCGGCATCA+AGG 0.524088 4_1:-79340432 None:intergenic
AGCTGTTCTTCGAGCTGTGG+TGG 0.524261 4_1:-79338746 None:intergenic
TTCCACCTTTACAACTTGAA+GGG 0.526364 4_1:+79340135 Msa0575450:CDS
CAAGAGAAGGAAGAAGATGA+AGG 0.527000 4_1:+79339825 Msa0575450:CDS
GAAGGAAGAAGATGAAGGTG+AGG 0.527620 4_1:+79339830 Msa0575450:CDS
CAGATGAAGAAACTGTGACT+AGG 0.532322 4_1:+79340048 Msa0575450:CDS
AGATGAAGAAACTGTGACTA+GGG 0.533523 4_1:+79340049 Msa0575450:CDS
AATGCAGAAGATTGAATCCA+TGG 0.535381 4_1:+79340673 Msa0575450:CDS
CATGCCGATTCTCCGGAAGA+TGG 0.536713 4_1:+79340158 Msa0575450:CDS
CACGGATCGTGGCTGATATG+TGG 0.539317 4_1:+79341212 Msa0575450:CDS
GATTGAATCCATGGCAGTTG+AGG 0.540044 4_1:+79340682 Msa0575450:CDS
AGAGAAACCGGTTGCAGATG+AGG 0.540398 4_1:+79339872 Msa0575450:CDS
GCATCGCATGAATCCGTAAG+TGG 0.540823 4_1:+79340344 Msa0575450:CDS
ATCGCGTCAGCTGTCGTACA+AGG 0.542327 4_1:+79340491 Msa0575450:CDS
ACTGCTTTCACTGTAAACTT+CGG 0.543612 4_1:-79338833 None:intergenic
GTTCCACAAATAAGAATGCA+TGG 0.544139 4_1:+79341068 Msa0575450:CDS
GGATGTGTGTGATTTGTAGA+GGG 0.546560 4_1:-79338725 None:intergenic
GACCTTCCTTCTTCCATGAA+CGG 0.548612 4_1:+79339087 Msa0575450:CDS
TGCAATGGTTAGTTGCATAT+GGG 0.549444 4_1:+79341119 Msa0575450:CDS
GAGTCTATGATGGGAGATGA+TGG 0.552409 4_1:+79339978 Msa0575450:CDS
GATATTGGTTGTCCAACTGC+GGG 0.552803 4_1:+79340904 Msa0575450:CDS
CGGTAAAGGCTTGGGTTGTG+TGG 0.554157 4_1:+79340211 Msa0575450:CDS
TCTTGATCGCCATGGGGACA+AGG 0.555366 4_1:-79338881 None:intergenic
TGGCAGTGCCATTCAAGGAA+TGG 0.555467 4_1:+79339668 Msa0575450:CDS
TTTCAATGCAGAAACTATGC+GGG 0.556470 4_1:-79340546 None:intergenic
GGGCTAAGGAGGAGGAGAAG+AGG 0.559729 4_1:+79341002 Msa0575450:CDS
GTGACGAAATACTCCATAGC+AGG 0.562189 4_1:-79341192 None:intergenic
CTAGCCACAACAACATCCAA+AGG 0.562371 4_1:-79340272 None:intergenic
GCATGCCCTTCAAGTTGTAA+AGG 0.562567 4_1:-79340140 None:intergenic
TGGGGACAAGGACATGCGAC+GGG 0.563051 4_1:-79338869 None:intergenic
TCACTTTACAAGCTTGACAT+CGG 0.564256 4_1:-79341254 None:intergenic
TGGATGTGTGTGATTTGTAG+AGG 0.564843 4_1:-79338726 None:intergenic
CAAAGTAACAAGCATGCATG+TGG 0.566320 4_1:+79341027 Msa0575450:CDS
GACAGAAACCAAAGAGGTGG+TGG 0.570453 4_1:+79338930 Msa0575450:CDS
TCATTGTGATCTTCAATGGA+TGG 0.574269 4_1:-79338799 None:intergenic
TCAAGACCAAAGCTTGAGGA+TGG 0.574280 4_1:+79338898 Msa0575450:CDS
AAGGTGCACGAGTAAGGCAG+TGG 0.574926 4_1:+79339382 Msa0575450:CDS
GCTCAAAGAAAGGGGAAAGT+GGG 0.576184 4_1:+79340765 Msa0575450:CDS
ACTCCTTCGCATTCACATGA+AGG 0.576309 4_1:+79339645 Msa0575450:CDS
AAAGCTCTTGAGTCTATGAT+GGG 0.578864 4_1:+79339969 Msa0575450:CDS
TGCAACACGTTCTGGCACAA+AGG 0.579645 4_1:+79340979 Msa0575450:CDS
AACTTTCTGGACAGAAGAAG+AGG 0.581837 4_1:-79339730 None:intergenic
GGAAGCTGTTCTTCGAGCTG+TGG 0.583506 4_1:-79338749 None:intergenic
ATGGTTAGTTGCATATGGGT+TGG 0.588597 4_1:+79341123 Msa0575450:CDS
GGAGTTTCTTCAGATGCTTG+AGG 0.589691 4_1:+79340070 Msa0575450:CDS
AATCCTCCACTTGTTCTATG+TGG 0.592843 4_1:-79339758 None:intergenic
GATGGAACAGGAGTTGTTCG+TGG 0.594167 4_1:-79338781 None:intergenic
TGATGACCACATAGAACAAG+TGG 0.594643 4_1:+79339752 Msa0575450:CDS
CGTTAGGAAGAAGGAAACAA+AGG 0.595602 4_1:+79339128 Msa0575450:CDS
AGACGATATGAAGAAGTTGG+AGG 0.596461 4_1:+79340935 Msa0575450:CDS
AAGTTATCTGGAAAGGCGAA+AGG 0.598430 4_1:+79339417 Msa0575450:CDS
AATGAAAATAGAGGAAGAGA+CGG 0.598522 4_1:+79340013 Msa0575450:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.599945 4_1:+79340227 Msa0575450:CDS
TGCCCTTCAAGTTGTAAAGG+TGG 0.600821 4_1:-79340137 None:intergenic
TGCACTCAGCTCAAAGAAAG+GGG 0.602008 4_1:+79340757 Msa0575450:CDS
AAAGACTAACTGCAATGCAA+TGG 0.603303 4_1:+79341104 Msa0575450:CDS
GTCCGTTCATGGAAGAAGGA+AGG 0.603868 4_1:-79339089 None:intergenic
TCCGTTGAGAAAAGCCAACA+AGG 0.603895 4_1:+79339363 Msa0575450:CDS
ATGCCATCACGTGTTTCGCA+AGG 0.606513 4_1:+79339168 Msa0575450:CDS
GTTTCTTCAGATGCTTGAGG+AGG 0.606539 4_1:+79340073 Msa0575450:CDS
TGATATTGGTTGTCCAACTG+CGG 0.606602 4_1:+79340903 Msa0575450:CDS
AGATAAATTGAAAAGGGACG+TGG 0.607650 4_1:-79339270 None:intergenic
CGTCAGCTGTCGTACAAGGT+AGG 0.608854 4_1:+79340495 Msa0575450:CDS
GATGCCGATAGATGAACTGA+TGG 0.613209 4_1:+79340436 Msa0575450:CDS
TCTCTAATCCAATCCTCAAG+TGG 0.613755 4_1:-79340812 None:intergenic
AGGGAAGAAGACATTGACAA+AGG 0.614678 4_1:+79341162 Msa0575450:CDS
TCAGATTCTTGAAGAACTAG+AGG 0.615369 4_1:+79338690 Msa0575450:CDS
TGCTATGGAGTATTTCGTCA+CGG 0.616016 4_1:+79341194 Msa0575450:CDS
GAGGTCAGAAAGATATACTT+CGG 0.619421 4_1:-79340189 None:intergenic
CAAAGCTTAAGCTACAACAA+AGG 0.620042 4_1:+79340836 Msa0575450:CDS
GGTTGCAGATGAGGTTGTGA+AGG 0.621662 4_1:+79339881 Msa0575450:CDS
CTGAGTGCAGAAACATCGAA+TGG 0.625191 4_1:-79340743 None:intergenic
TGTTGTTGGTATAATAAGCA+TGG 0.627355 4_1:-79339227 None:intergenic
GAAGTATATCTTTCTGACCT+CGG 0.627389 4_1:+79340191 Msa0575450:CDS
GTAAAGGTGGAATTTCAGGT+TGG 0.628299 4_1:-79340124 None:intergenic
CATCGCATGAATCCGTAAGT+GGG 0.628618 4_1:+79340345 Msa0575450:CDS
ATATGTGAAAGTGCACGCAT+CGG 0.629019 4_1:-79339012 None:intergenic
TTTGGATTGTTTGCGTGCGA+AGG 0.630319 4_1:-79339571 None:intergenic
GGCATTGGTCTTGATGAACT+CGG 0.632439 4_1:+79340392 Msa0575450:CDS
AAGGACATGCGACGGGATCG+AGG 0.632471 4_1:-79338862 None:intergenic
ATTGAAAATTCAAGCTGACG+TGG 0.632872 4_1:+79340706 Msa0575450:CDS
CCACCTTCATGTGAATGCGA+AGG 0.633028 4_1:-79339648 None:intergenic
TTCCACAAATAAGAATGCAT+GGG 0.633963 4_1:+79341069 Msa0575450:CDS
GCGATCAAGACCAAAGCTTG+AGG 0.634062 4_1:+79338894 Msa0575450:CDS
GAGCTTCAAGTTATCTGGAA+AGG 0.635002 4_1:+79339410 Msa0575450:CDS
GCCGATTCTCCGGAAGATGG+AGG 0.639156 4_1:+79340161 Msa0575450:CDS
ATGGGGACAAGGACATGCGA+CGG 0.641046 4_1:-79338870 None:intergenic
AAAGTAACAAGCATGCATGT+GGG 0.649857 4_1:+79341028 Msa0575450:CDS
CAAGACAGAAACCAAAGAGG+TGG 0.653529 4_1:+79338927 Msa0575450:CDS
TCTAGGACTAGGCACACTGA+AGG 0.657190 4_1:-79339598 None:intergenic
GAGGAGGATCAAGACAGCAA+AGG 0.657946 4_1:+79340089 Msa0575450:CDS
AACACGTTCTGGCACAAAGG+GGG 0.659062 4_1:+79340982 Msa0575450:CDS
GCTCCTTGCGAAACACGTGA+TGG 0.659072 4_1:-79339171 None:intergenic
CAAACATTATCAGTTCAGGA+AGG 0.660678 4_1:+79340576 Msa0575450:CDS
CAAGCTCAGACAATCTAGCA+TGG 0.661428 4_1:-79339926 None:intergenic
AGGAAGAAGGAAACAAAGGA+TGG 0.665822 4_1:+79339132 Msa0575450:CDS
GTAACAAGCATGCATGTGGG+TGG 0.668323 4_1:+79341031 Msa0575450:CDS
CCTTCGCATTCACATGAAGG+TGG 0.668486 4_1:+79339648 Msa0575450:CDS
ATGCCGATAGATGAACTGAT+GGG 0.669377 4_1:+79340437 Msa0575450:CDS
AGGTGCACGAGTAAGGCAGT+GGG 0.671222 4_1:+79339383 Msa0575450:CDS
GCATGAATAAGCACCATCGT+AGG 0.672184 4_1:-79340959 None:intergenic
TTATCTGGAAAGGCGAAAGG+AGG 0.674087 4_1:+79339420 Msa0575450:CDS
GTACAAGGTAGGAACAAGGA+AGG 0.681269 4_1:+79340506 Msa0575450:CDS
TTCCAAGACAGAAACCAAAG+AGG 0.681865 4_1:+79338924 Msa0575450:CDS
AGTTGTTCGTGGCAAAACAA+GGG 0.685686 4_1:-79338770 None:intergenic
TTCATCTATCGGCATCAAGG+AGG 0.688397 4_1:-79340429 None:intergenic
TGACCACATAGAACAAGTGG+AGG 0.689391 4_1:+79339755 Msa0575450:CDS
TGTCGTACAAGGTAGGAACA+AGG 0.689829 4_1:+79340502 Msa0575450:CDS
GTGGTTCAAACAAGAGATGG+CGG 0.692152 4_1:+79340230 Msa0575450:CDS
AGAAGTTGGAGGACCTACGA+TGG 0.697633 4_1:+79340946 Msa0575450:CDS
TGACAAGCAGAAACGACGCG+TGG 0.698961 4_1:+79339622 Msa0575450:CDS
CTTTGGTCTTGATCGCCATG+GGG 0.700721 4_1:-79338887 None:intergenic
CAACACGTTCTGGCACAAAG+GGG 0.715647 4_1:+79340981 Msa0575450:CDS
CATATGGGTTGGGAAAAGCA+GGG 0.739417 4_1:+79341134 Msa0575450:CDS
CACAACCCAAGCCTTTACCG+AGG 0.745080 4_1:-79340208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCAAAAAGATAAATTGAAAA+GGG - chr4_1:79339279-79339298 None:intergenic 20.0%
!! AGCAAAAAGATAAATTGAAA+AGG - chr4_1:79339280-79339299 None:intergenic 20.0%
!! TAATAATGCAATGAAAATAG+AGG + chr4_1:79340004-79340023 Msa0575450:CDS 20.0%
! TAACACATCAACAACTAATT+TGG + chr4_1:79338954-79338973 Msa0575450:CDS 25.0%
! AACACATCAACAACTAATTT+GGG + chr4_1:79338955-79338974 Msa0575450:CDS 25.0%
!!! ATTTTGAGGTAGTTGATAAA+GGG + chr4_1:79339793-79339812 Msa0575450:CDS 25.0%
ATTGTCATTGTGATCTTCAA+TGG - chr4_1:79338806-79338825 None:intergenic 30.0%
TGTTGTTGGTATAATAAGCA+TGG - chr4_1:79339230-79339249 None:intergenic 30.0%
TTATCAACTACCTCAAAATC+CGG - chr4_1:79339792-79339811 None:intergenic 30.0%
!!! GATTTTGAGGTAGTTGATAA+AGG + chr4_1:79339792-79339811 Msa0575450:CDS 30.0%
TAAAACCATAGAAGAGAAAC+CGG + chr4_1:79339860-79339879 Msa0575450:CDS 30.0%
AATGAAAATAGAGGAAGAGA+CGG + chr4_1:79340013-79340032 Msa0575450:CDS 30.0%
!! GTTTGACTTGTTTCAGAAAT+TGG + chr4_1:79340367-79340386 Msa0575450:CDS 30.0%
! TTTTCAATGCAGAAACTATG+CGG - chr4_1:79340550-79340569 None:intergenic 30.0%
ATGTCAAACATTATCAGTTC+AGG + chr4_1:79340572-79340591 Msa0575450:CDS 30.0%
TTCCACAAATAAGAATGCAT+GGG + chr4_1:79341069-79341088 Msa0575450:CDS 30.0%
TCTTCAAGAATCTGAGCATT+GGG - chr4_1:79338685-79338704 None:intergenic 35.0%
TTCTTCAAGAATCTGAGCAT+TGG - chr4_1:79338686-79338705 None:intergenic 35.0%
TCAGATTCTTGAAGAACTAG+AGG + chr4_1:79338690-79338709 Msa0575450:CDS 35.0%
TCATTGTGATCTTCAATGGA+TGG - chr4_1:79338802-79338821 None:intergenic 35.0%
ACTGCTTTCACTGTAAACTT+CGG - chr4_1:79338836-79338855 None:intergenic 35.0%
AGAATGAGAAGAAAGGGATT+TGG + chr4_1:79338980-79338999 Msa0575450:CDS 35.0%
CTTCTTCTCATGATTGTTGT+TGG - chr4_1:79339244-79339263 None:intergenic 35.0%
AGATAAATTGAAAAGGGACG+TGG - chr4_1:79339273-79339292 None:intergenic 35.0%
!! GAAACTTGGTTTTCAGATTG+TGG + chr4_1:79339455-79339474 Msa0575450:CDS 35.0%
TTTCAGATTGTGGAGAAAGA+TGG + chr4_1:79339465-79339484 Msa0575450:CDS 35.0%
AGGAATCATGAACTGGATTT+GGG - chr4_1:79339713-79339732 None:intergenic 35.0%
! TTTTGATCTTCCGGATTTTG+AGG + chr4_1:79339779-79339798 Msa0575450:CDS 35.0%
AAAAGCTCTTGAGTCTATGA+TGG + chr4_1:79339968-79339987 Msa0575450:CDS 35.0%
AAAGCTCTTGAGTCTATGAT+GGG + chr4_1:79339969-79339988 Msa0575450:CDS 35.0%
AGATGAAGAAACTGTGACTA+GGG + chr4_1:79340049-79340068 Msa0575450:CDS 35.0%
AGTTGTAAAGGTGGAATTTC+AGG - chr4_1:79340131-79340150 None:intergenic 35.0%
ATTCCACCTTTACAACTTGA+AGG + chr4_1:79340134-79340153 Msa0575450:CDS 35.0%
TTCCACCTTTACAACTTGAA+GGG + chr4_1:79340135-79340154 Msa0575450:CDS 35.0%
GAGGTCAGAAAGATATACTT+CGG - chr4_1:79340192-79340211 None:intergenic 35.0%
GAAGTATATCTTTCTGACCT+CGG + chr4_1:79340191-79340210 Msa0575450:CDS 35.0%
AACAACATCCAAAGGATTCA+TGG - chr4_1:79340267-79340286 None:intergenic 35.0%
AAACAAGTCAAACCCACTTA+CGG - chr4_1:79340360-79340379 None:intergenic 35.0%
TTTCCCATCAGTTCATCTAT+CGG - chr4_1:79340443-79340462 None:intergenic 35.0%
TTTCAATGCAGAAACTATGC+GGG - chr4_1:79340549-79340568 None:intergenic 35.0%
CAAACATTATCAGTTCAGGA+AGG + chr4_1:79340576-79340595 Msa0575450:CDS 35.0%
AACGAATATCAACAGGACTT+TGG + chr4_1:79340603-79340622 Msa0575450:CDS 35.0%
AATGCAGAAGATTGAATCCA+TGG + chr4_1:79340673-79340692 Msa0575450:CDS 35.0%
ATTGAAAATTCAAGCTGACG+TGG + chr4_1:79340706-79340725 Msa0575450:CDS 35.0%
! CTTTGTTGTAGCTTAAGCTT+TGG - chr4_1:79340838-79340857 None:intergenic 35.0%
CAAAGCTTAAGCTACAACAA+AGG + chr4_1:79340836-79340855 Msa0575450:CDS 35.0%
ACTTCTTCATATCGTCTCAT+TGG - chr4_1:79340932-79340951 None:intergenic 35.0%
ATGAGACGATATGAAGAAGT+TGG + chr4_1:79340932-79340951 Msa0575450:CDS 35.0%
AAAGTAACAAGCATGCATGT+GGG + chr4_1:79341028-79341047 Msa0575450:CDS 35.0%
GTTCCACAAATAAGAATGCA+TGG + chr4_1:79341068-79341087 Msa0575450:CDS 35.0%
AAAGACTAACTGCAATGCAA+TGG + chr4_1:79341104-79341123 Msa0575450:CDS 35.0%
! ATGCAATGGTTAGTTGCATA+TGG + chr4_1:79341118-79341137 Msa0575450:CDS 35.0%
! TGCAATGGTTAGTTGCATAT+GGG + chr4_1:79341119-79341138 Msa0575450:CDS 35.0%
TCACTTTACAAGCTTGACAT+CGG - chr4_1:79341257-79341276 None:intergenic 35.0%
! GGATGTGTGTGATTTGTAGA+GGG - chr4_1:79338728-79338747 None:intergenic 40.0%
! TGGATGTGTGTGATTTGTAG+AGG - chr4_1:79338729-79338748 None:intergenic 40.0%
AGTTGTTCGTGGCAAAACAA+GGG - chr4_1:79338773-79338792 None:intergenic 40.0%
TGATCTTCAATGGATGGAAC+AGG - chr4_1:79338796-79338815 None:intergenic 40.0%
GAAATTCCATCCTCAAGCTT+TGG - chr4_1:79338907-79338926 None:intergenic 40.0%
TTCCAAGACAGAAACCAAAG+AGG + chr4_1:79338924-79338943 Msa0575450:CDS 40.0%
TTGGGAGAGAATGAGAAGAA+AGG + chr4_1:79338973-79338992 Msa0575450:CDS 40.0%
TGGGAGAGAATGAGAAGAAA+GGG + chr4_1:79338974-79338993 Msa0575450:CDS 40.0%
AGAAGAAAGGGATTTGGAAG+TGG + chr4_1:79338986-79339005 Msa0575450:CDS 40.0%
! ATATGTGAAAGTGCACGCAT+CGG - chr4_1:79339015-79339034 None:intergenic 40.0%
ATGCGTGCACTTTCACATAT+TGG + chr4_1:79339015-79339034 Msa0575450:CDS 40.0%
CTGTTTGTTCTCTGTTGAAG+TGG + chr4_1:79339053-79339072 Msa0575450:CDS 40.0%
TTCCTTCTTCCTAACGCAAA+CGG - chr4_1:79339124-79339143 None:intergenic 40.0%
CGTTAGGAAGAAGGAAACAA+AGG + chr4_1:79339128-79339147 Msa0575450:CDS 40.0%
AGGAAGAAGGAAACAAAGGA+TGG + chr4_1:79339132-79339151 Msa0575450:CDS 40.0%
!! GGATTTTGGAAGAAGCTATG+TGG + chr4_1:79339317-79339336 Msa0575450:CDS 40.0%
!!! ACCTTGTTGGCTTTTCTCAA+CGG - chr4_1:79339367-79339386 None:intergenic 40.0%
! GATACGAGCTTCAAGTTATC+TGG + chr4_1:79339405-79339424 Msa0575450:CDS 40.0%
! GAGCTTCAAGTTATCTGGAA+AGG + chr4_1:79339410-79339429 Msa0575450:CDS 40.0%
AAGTTATCTGGAAAGGCGAA+AGG + chr4_1:79339417-79339436 Msa0575450:CDS 40.0%
!! GGAGAACTTGTTGTGAAACT+TGG + chr4_1:79339441-79339460 Msa0575450:CDS 40.0%
CTGGACTTTGAATTCTGCAT+TGG - chr4_1:79339528-79339547 None:intergenic 40.0%
TGACAAACTACTCAACTTGC+TGG - chr4_1:79339547-79339566 None:intergenic 40.0%
TCGTTTCTGCTTGTCATTCT+AGG - chr4_1:79339618-79339637 None:intergenic 40.0%
CAAATCGTCCATTCCTTGAA+TGG - chr4_1:79339679-79339698 None:intergenic 40.0%
GAGGAATCATGAACTGGATT+TGG - chr4_1:79339714-79339733 None:intergenic 40.0%
GAAGAAGAGGAATCATGAAC+TGG - chr4_1:79339720-79339739 None:intergenic 40.0%
AACTTTCTGGACAGAAGAAG+AGG - chr4_1:79339733-79339752 None:intergenic 40.0%
CTATGTGGTCATCAACTTTC+TGG - chr4_1:79339746-79339765 None:intergenic 40.0%
TGATGACCACATAGAACAAG+TGG + chr4_1:79339752-79339771 Msa0575450:CDS 40.0%
AATCCTCCACTTGTTCTATG+TGG - chr4_1:79339761-79339780 None:intergenic 40.0%
!! AGTGGAGGATTTTGATCTTC+CGG + chr4_1:79339770-79339789 Msa0575450:CDS 40.0%
!! GGTAGTTGATAAAGGGATTG+AGG + chr4_1:79339800-79339819 Msa0575450:CDS 40.0%
CAAGAGAAGGAAGAAGATGA+AGG + chr4_1:79339825-79339844 Msa0575450:CDS 40.0%
CAGATGAAGAAACTGTGACT+AGG + chr4_1:79340048-79340067 Msa0575450:CDS 40.0%
! GTAAAGGTGGAATTTCAGGT+TGG - chr4_1:79340127-79340146 None:intergenic 40.0%
TATCTTTCTGACCTCGGTAA+AGG + chr4_1:79340197-79340216 Msa0575450:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG + chr4_1:79340227-79340246 Msa0575450:CDS 40.0%
GAATCCTTTGGATGTTGTTG+TGG + chr4_1:79340268-79340287 Msa0575450:CDS 40.0%
!! ACATCTGCATTGCTAGCTTT+GGG - chr4_1:79340307-79340326 None:intergenic 40.0%
! GATGTCAAAGCCTTTTGTGT+TGG + chr4_1:79340322-79340341 Msa0575450:CDS 40.0%
! GACTTGTTTCAGAAATTGGC+TGG + chr4_1:79340371-79340390 Msa0575450:CDS 40.0%
TTTCAGAAATTGGCTGGCAT+TGG + chr4_1:79340377-79340396 Msa0575450:CDS 40.0%
ATGCCGATAGATGAACTGAT+GGG + chr4_1:79340437-79340456 Msa0575450:CDS 40.0%
AGGAGAGAACGAATATCAAC+AGG + chr4_1:79340596-79340615 Msa0575450:CDS 40.0%
!! AGAAGCTTCTCTGAAGTAAC+TGG - chr4_1:79340644-79340663 None:intergenic 40.0%
ATCGAATGGAGCTTCTTCTT+CGG - chr4_1:79340732-79340751 None:intergenic 40.0%
! GGAAAGTGGGAAAGATCTTT+TGG + chr4_1:79340778-79340797 Msa0575450:CDS 40.0%
TCTCTAATCCAATCCTCAAG+TGG - chr4_1:79340815-79340834 None:intergenic 40.0%
! ACTGCAACTGCAAGTTCTAA+TGG + chr4_1:79340860-79340879 Msa0575450:CDS 40.0%
AATATCAGCGTGACTCTTTC+AGG - chr4_1:79340890-79340909 None:intergenic 40.0%
TGAAAGAGTCACGCTGATAT+TGG + chr4_1:79340889-79340908 Msa0575450:CDS 40.0%
! TGATATTGGTTGTCCAACTG+CGG + chr4_1:79340903-79340922 Msa0575450:CDS 40.0%
AGACGATATGAAGAAGTTGG+AGG + chr4_1:79340935-79340954 Msa0575450:CDS 40.0%
CTTATTCATGCAACACGTTC+TGG + chr4_1:79340971-79340990 Msa0575450:CDS 40.0%
CAAAGTAACAAGCATGCATG+TGG + chr4_1:79341027-79341046 Msa0575450:CDS 40.0%
ATGTGGGTGGTTTCAAAGTT+AGG + chr4_1:79341044-79341063 Msa0575450:CDS 40.0%
! GTCCCATGCATTCTTATTTG+TGG - chr4_1:79341074-79341093 None:intergenic 40.0%
! ATGGTTAGTTGCATATGGGT+TGG + chr4_1:79341123-79341142 Msa0575450:CDS 40.0%
! TGGTTAGTTGCATATGGGTT+GGG + chr4_1:79341124-79341143 Msa0575450:CDS 40.0%
AGGGAAGAAGACATTGACAA+AGG + chr4_1:79341162-79341181 Msa0575450:CDS 40.0%
GGGAAGAAGACATTGACAAA+GGG + chr4_1:79341163-79341182 Msa0575450:CDS 40.0%
! TGCTATGGAGTATTTCGTCA+CGG + chr4_1:79341194-79341213 Msa0575450:CDS 40.0%
CACTTTACAAGCTTGACATC+GGG - chr4_1:79341256-79341275 None:intergenic 40.0%
!! CTGAGCATTGGGATTGTTCT+TGG - chr4_1:79338674-79338693 None:intergenic 45.0%
GAGTTGTTCGTGGCAAAACA+AGG - chr4_1:79338774-79338793 None:intergenic 45.0%
TCAAGACCAAAGCTTGAGGA+TGG + chr4_1:79338898-79338917 Msa0575450:CDS 45.0%
! CACCTCTTTGGTTTCTGTCT+TGG - chr4_1:79338929-79338948 None:intergenic 45.0%
CAAGACAGAAACCAAAGAGG+TGG + chr4_1:79338927-79338946 Msa0575450:CDS 45.0%
TGTGTTAACCACCACCTCTT+TGG - chr4_1:79338941-79338960 None:intergenic 45.0%
GACCTTCCTTCTTCCATGAA+CGG + chr4_1:79339087-79339106 Msa0575450:CDS 45.0%
CTTAGTCCGTTCATGGAAGA+AGG - chr4_1:79339096-79339115 None:intergenic 45.0%
! TAAGACTAGCCGTTTGCGTT+AGG + chr4_1:79339112-79339131 Msa0575450:CDS 45.0%
! GATGCTCAAGAGCTGGATTT+TGG + chr4_1:79339303-79339322 Msa0575450:CDS 45.0%
TCCGTTGAGAAAAGCCAACA+AGG + chr4_1:79339363-79339382 Msa0575450:CDS 45.0%
TTATCTGGAAAGGCGAAAGG+AGG + chr4_1:79339420-79339439 Msa0575450:CDS 45.0%
CAGATTGTGGAGAAAGATGG+AGG + chr4_1:79339468-79339487 Msa0575450:CDS 45.0%
TTTGGATTGTTTGCGTGCGA+AGG - chr4_1:79339574-79339593 None:intergenic 45.0%
AGGCACACTGAAGGATGATT+TGG - chr4_1:79339592-79339611 None:intergenic 45.0%
!! CTGCTTGTCATTCTAGGACT+AGG - chr4_1:79339612-79339631 None:intergenic 45.0%
ACTCCTTCGCATTCACATGA+AGG + chr4_1:79339645-79339664 Msa0575450:CDS 45.0%
TGACCACATAGAACAAGTGG+AGG + chr4_1:79339755-79339774 Msa0575450:CDS 45.0%
AGGGATTGAGGTTCAAGAGA+AGG + chr4_1:79339812-79339831 Msa0575450:CDS 45.0%
GAAGGAAGAAGATGAAGGTG+AGG + chr4_1:79339830-79339849 Msa0575450:CDS 45.0%
! TGCAACCGGTTTCTCTTCTA+TGG - chr4_1:79339868-79339887 None:intergenic 45.0%
TTCACAACCTCATCTGCAAC+CGG - chr4_1:79339882-79339901 None:intergenic 45.0%
CAAGCTCAGACAATCTAGCA+TGG - chr4_1:79339929-79339948 None:intergenic 45.0%
! GAGTCTATGATGGGAGATGA+TGG + chr4_1:79339978-79339997 Msa0575450:CDS 45.0%
AGAGGAAGAGACGGAATCAT+TGG + chr4_1:79340022-79340041 Msa0575450:CDS 45.0%
GGAGTTTCTTCAGATGCTTG+AGG + chr4_1:79340070-79340089 Msa0575450:CDS 45.0%
GTTTCTTCAGATGCTTGAGG+AGG + chr4_1:79340073-79340092 Msa0575450:CDS 45.0%
!! TGCCCTTCAAGTTGTAAAGG+TGG - chr4_1:79340140-79340159 None:intergenic 45.0%
!! GCATGCCCTTCAAGTTGTAA+AGG - chr4_1:79340143-79340162 None:intergenic 45.0%
GTGGTTCAAACAAGAGATGG+CGG + chr4_1:79340230-79340249 Msa0575450:CDS 45.0%
!! AACAAGAGATGGCGGATACT+TGG + chr4_1:79340238-79340257 Msa0575450:CDS 45.0%
CTTGGCTTCCATGAATCCTT+TGG + chr4_1:79340256-79340275 Msa0575450:CDS 45.0%
CTAGCCACAACAACATCCAA+AGG - chr4_1:79340275-79340294 None:intergenic 45.0%
!! CATCTGCATTGCTAGCTTTG+GGG - chr4_1:79340306-79340325 None:intergenic 45.0%
! GACATCTGCATTGCTAGCTT+TGG - chr4_1:79340308-79340327 None:intergenic 45.0%
TCATGCGATGCCAACACAAA+AGG - chr4_1:79340335-79340354 None:intergenic 45.0%
CATCGCATGAATCCGTAAGT+GGG + chr4_1:79340345-79340364 Msa0575450:CDS 45.0%
!! GGCATTGGTCTTGATGAACT+CGG + chr4_1:79340392-79340411 Msa0575450:CDS 45.0%
TTCATCTATCGGCATCAAGG+AGG - chr4_1:79340432-79340451 None:intergenic 45.0%
CAGTTCATCTATCGGCATCA+AGG - chr4_1:79340435-79340454 None:intergenic 45.0%
GATGCCGATAGATGAACTGA+TGG + chr4_1:79340436-79340455 Msa0575450:CDS 45.0%
!! GCAGAGCAGATTGCTTTTGA+AGG + chr4_1:79340467-79340486 Msa0575450:CDS 45.0%
TGTCGTACAAGGTAGGAACA+AGG + chr4_1:79340502-79340521 Msa0575450:CDS 45.0%
GTACAAGGTAGGAACAAGGA+AGG + chr4_1:79340506-79340525 Msa0575450:CDS 45.0%
GATTGAATCCATGGCAGTTG+AGG + chr4_1:79340682-79340701 Msa0575450:CDS 45.0%
TTTCAATGCCTCAACTGCCA+TGG - chr4_1:79340693-79340712 None:intergenic 45.0%
CTGAGTGCAGAAACATCGAA+TGG - chr4_1:79340746-79340765 None:intergenic 45.0%
TCTGCACTCAGCTCAAAGAA+AGG + chr4_1:79340755-79340774 Msa0575450:CDS 45.0%
CTGCACTCAGCTCAAAGAAA+GGG + chr4_1:79340756-79340775 Msa0575450:CDS 45.0%
TGCACTCAGCTCAAAGAAAG+GGG + chr4_1:79340757-79340776 Msa0575450:CDS 45.0%
AGCTCAAAGAAAGGGGAAAG+TGG + chr4_1:79340764-79340783 Msa0575450:CDS 45.0%
GCTCAAAGAAAGGGGAAAGT+GGG + chr4_1:79340765-79340784 Msa0575450:CDS 45.0%
CTGCTATTCCACTTGAGGAT+TGG + chr4_1:79340804-79340823 Msa0575450:CDS 45.0%
! GATATTGGTTGTCCAACTGC+GGG + chr4_1:79340904-79340923 Msa0575450:CDS 45.0%
GCATGAATAAGCACCATCGT+AGG - chr4_1:79340962-79340981 None:intergenic 45.0%
!! CATATGGGTTGGGAAAAGCA+GGG + chr4_1:79341134-79341153 Msa0575450:CDS 45.0%
TTGGGAAAAGCAGGGAAGAA+AGG + chr4_1:79341142-79341161 Msa0575450:CDS 45.0%
TGGGAAAAGCAGGGAAGAAA+GGG + chr4_1:79341143-79341162 Msa0575450:CDS 45.0%
GTGACGAAATACTCCATAGC+AGG - chr4_1:79341195-79341214 None:intergenic 45.0%
CTTGACATCGGGATTTCTCA+TGG - chr4_1:79341245-79341264 None:intergenic 45.0%
GATGGAACAGGAGTTGTTCG+TGG - chr4_1:79338784-79338803 None:intergenic 50.0%
!! CTTTGGTCTTGATCGCCATG+GGG - chr4_1:79338890-79338909 None:intergenic 50.0%
!! GCTTTGGTCTTGATCGCCAT+GGG - chr4_1:79338891-79338910 None:intergenic 50.0%
!! AGCTTTGGTCTTGATCGCCA+TGG - chr4_1:79338892-79338911 None:intergenic 50.0%
GCGATCAAGACCAAAGCTTG+AGG + chr4_1:79338894-79338913 Msa0575450:CDS 50.0%
GACAGAAACCAAAGAGGTGG+TGG + chr4_1:79338930-79338949 Msa0575450:CDS 50.0%
GTCCGTTCATGGAAGAAGGA+AGG - chr4_1:79339092-79339111 None:intergenic 50.0%
!! GGCTAGTCTTAGTCCGTTCA+TGG - chr4_1:79339103-79339122 None:intergenic 50.0%
AGCCGTTTGCGTTAGGAAGA+AGG + chr4_1:79339119-79339138 Msa0575450:CDS 50.0%
ATGCCATCACGTGTTTCGCA+AGG + chr4_1:79339168-79339187 Msa0575450:CDS 50.0%
TGCTGTTGATGCTCAAGAGC+TGG + chr4_1:79339296-79339315 Msa0575450:CDS 50.0%
! TCTAGGACTAGGCACACTGA+AGG - chr4_1:79339601-79339620 None:intergenic 50.0%
CCACCTTCATGTGAATGCGA+AGG - chr4_1:79339651-79339670 None:intergenic 50.0%
CCTTCGCATTCACATGAAGG+TGG + chr4_1:79339648-79339667 Msa0575450:CDS 50.0%
! TGGCAGTGCCATTCAAGGAA+TGG + chr4_1:79339668-79339687 Msa0575450:CDS 50.0%
AGAGAAACCGGTTGCAGATG+AGG + chr4_1:79339872-79339891 Msa0575450:CDS 50.0%
GGTTGCAGATGAGGTTGTGA+AGG + chr4_1:79339881-79339900 Msa0575450:CDS 50.0%
GAGGAGGATCAAGACAGCAA+AGG + chr4_1:79340089-79340108 Msa0575450:CDS 50.0%
TCCTCCATCTTCCGGAGAAT+CGG - chr4_1:79340165-79340184 None:intergenic 50.0%
TCGGATTCTCCTCCATCTTC+CGG - chr4_1:79340173-79340192 None:intergenic 50.0%
TTCTGACCTCGGTAAAGGCT+TGG + chr4_1:79340202-79340221 Msa0575450:CDS 50.0%
TCTGACCTCGGTAAAGGCTT+GGG + chr4_1:79340203-79340222 Msa0575450:CDS 50.0%
GCATCGCATGAATCCGTAAG+TGG + chr4_1:79340344-79340363 Msa0575450:CDS 50.0%
GGCTTCTGCTATTCCACTTG+AGG + chr4_1:79340799-79340818 Msa0575450:CDS 50.0%
AGAAGTTGGAGGACCTACGA+TGG + chr4_1:79340946-79340965 Msa0575450:CDS 50.0%
TGCAACACGTTCTGGCACAA+AGG + chr4_1:79340979-79340998 Msa0575450:CDS 50.0%
GCAACACGTTCTGGCACAAA+GGG + chr4_1:79340980-79340999 Msa0575450:CDS 50.0%
CAACACGTTCTGGCACAAAG+GGG + chr4_1:79340981-79341000 Msa0575450:CDS 50.0%
AACACGTTCTGGCACAAAGG+GGG + chr4_1:79340982-79341001 Msa0575450:CDS 50.0%
GTAACAAGCATGCATGTGGG+TGG + chr4_1:79341031-79341050 Msa0575450:CDS 50.0%
!! GCATATGGGTTGGGAAAAGC+AGG + chr4_1:79341133-79341152 Msa0575450:CDS 50.0%
CAAAGGGACAAGACCTGCTA+TGG + chr4_1:79341179-79341198 Msa0575450:CDS 50.0%
GAGTATTTCGTCACGGATCG+TGG + chr4_1:79341201-79341220 Msa0575450:CDS 50.0%
AGCTGTTCTTCGAGCTGTGG+TGG - chr4_1:79338749-79338768 None:intergenic 55.0%
GGAAGCTGTTCTTCGAGCTG+TGG - chr4_1:79338752-79338771 None:intergenic 55.0%
ATGGGGACAAGGACATGCGA+CGG - chr4_1:79338873-79338892 None:intergenic 55.0%
TCTTGATCGCCATGGGGACA+AGG - chr4_1:79338884-79338903 None:intergenic 55.0%
GCTCCTTGCGAAACACGTGA+TGG - chr4_1:79339174-79339193 None:intergenic 55.0%
GCCAACAAGGTGCACGAGTA+AGG + chr4_1:79339376-79339395 Msa0575450:CDS 55.0%
GCCTTACTCGTGCACCTTGT+TGG - chr4_1:79339380-79339399 None:intergenic 55.0%
AAGGTGCACGAGTAAGGCAG+TGG + chr4_1:79339382-79339401 Msa0575450:CDS 55.0%
AGGTGCACGAGTAAGGCAGT+GGG + chr4_1:79339383-79339402 Msa0575450:CDS 55.0%
TGACAAGCAGAAACGACGCG+TGG + chr4_1:79339622-79339641 Msa0575450:CDS 55.0%
! GAAGGTGGCAGTGCCATTCA+AGG + chr4_1:79339663-79339682 Msa0575450:CDS 55.0%
!! TGAAGGGCATGCCGATTCTC+CGG + chr4_1:79340151-79340170 Msa0575450:CDS 55.0%
!! CATGCCGATTCTCCGGAAGA+TGG + chr4_1:79340158-79340177 Msa0575450:CDS 55.0%
CACAACCCAAGCCTTTACCG+AGG - chr4_1:79340211-79340230 None:intergenic 55.0%
! CGGTAAAGGCTTGGGTTGTG+TGG + chr4_1:79340211-79340230 Msa0575450:CDS 55.0%
ATCGCGTCAGCTGTCGTACA+AGG + chr4_1:79340491-79340510 Msa0575450:CDS 55.0%
CGTCAGCTGTCGTACAAGGT+AGG + chr4_1:79340495-79340514 Msa0575450:CDS 55.0%
GTCTCATTGGATCCCGCAGT+TGG - chr4_1:79340919-79340938 None:intergenic 55.0%
TTCTGGCACAAAGGGGGCTA+AGG + chr4_1:79340988-79341007 Msa0575450:CDS 55.0%
CACGGATCGTGGCTGATATG+TGG + chr4_1:79341212-79341231 Msa0575450:CDS 55.0%
AAGGACATGCGACGGGATCG+AGG - chr4_1:79338865-79338884 None:intergenic 60.0%
TGGGGACAAGGACATGCGAC+GGG - chr4_1:79338872-79338891 None:intergenic 60.0%
GTCGCATGTCCTTGTCCCCA+TGG + chr4_1:79338872-79338891 Msa0575450:CDS 60.0%
! GCCGATTCTCCGGAAGATGG+AGG + chr4_1:79340161-79340180 Msa0575450:CDS 60.0%
AGAAACTATGCGGGCAGCGC+TGG - chr4_1:79340540-79340559 None:intergenic 60.0%
TGGCACAAAGGGGGCTAAGG+AGG + chr4_1:79340991-79341010 Msa0575450:CDS 60.0%
CACAAAGGGGGCTAAGGAGG+AGG + chr4_1:79340994-79341013 Msa0575450:CDS 60.0%
GGGCTAAGGAGGAGGAGAAG+AGG + chr4_1:79341002-79341021 Msa0575450:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79338661 79341276 79338661 ID=Msa0575450;Name=Msa0575450
chr4_1 mRNA 79338661 79341276 79338661 ID=Msa0575450-mRNA-1;Parent=Msa0575450;Name=Msa0575450-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|871
chr4_1 exon 79338661 79341276 79338661 ID=Msa0575450-mRNA-1:exon:28271;Parent=Msa0575450-mRNA-1
chr4_1 CDS 79338661 79341276 79338661 ID=Msa0575450-mRNA-1:cds;Parent=Msa0575450-mRNA-1
Gene Sequence

>Msa0575450

ATGGCAGATGCCAAGAACAATCCCAATGCTCAGATTCTTGAAGAACTAGAGGCTCTGAGTGAAACCCTCTACAAATCACACACATCCACCACAGCTCGAAGAACAGCTTCCCTTGTTTTGCCACGAACAACTCCTGTTCCATCCATTGAAGATCACAATGACAATCACGCAACCGAAGTTTACAGTGAAAGCAGTAACAAACCTCGATCCCGTCGCATGTCCTTGTCCCCATGGCGATCAAGACCAAAGCTTGAGGATGGAATTTCCAAGACAGAAACCAAAGAGGTGGTGGTTAACACATCAACAACTAATTTGGGAGAGAATGAGAAGAAAGGGATTTGGAAGTGGAAGCCGATGCGTGCACTTTCACATATTGGAATGCAGAAACTAAGCTGTTTGTTCTCTGTTGAAGTGGTAGCTGCTCAAGACCTTCCTTCTTCCATGAACGGACTAAGACTAGCCGTTTGCGTTAGGAAGAAGGAAACAAAGGATGGTGCTGTTAAGACAATGCCATCACGTGTTTCGCAAGGAGCTGCTGATTTCGAAGAGACACTTTTCATCAAGTGCCATGCTTATTATACCAACAACAATCATGAGAAGAAGTTTGAGCCACGTCCCTTTTCAATTTATCTTTTTGCTGTTGATGCTCAAGAGCTGGATTTTGGAAGAAGCTATGTGGATTTGAGCGAGTTGATTCGAGAGTCCGTTGAGAAAAGCCAACAAGGTGCACGAGTAAGGCAGTGGGATACGAGCTTCAAGTTATCTGGAAAGGCGAAAGGAGGAGAACTTGTTGTGAAACTTGGTTTTCAGATTGTGGAGAAAGATGGAGGAGTTGATATATACAATAATACAAATAACAATAGTCCAATGCAGAATTCAAAGTCCAGCAAGTTGAGTAGTTTGTCATCTTCCTTCGCACGCAAACAATCCAAATCATCCTTCAGTGTGCCTAGTCCTAGAATGACAAGCAGAAACGACGCGTGGACTCCTTCGCATTCACATGAAGGTGGCAGTGCCATTCAAGGAATGGACGATTTGAATCTTGATGACCCAAATCCAGTTCATGATTCCTCTTCTTCTGTCCAGAAAGTTGATGACCACATAGAACAAGTGGAGGATTTTGATCTTCCGGATTTTGAGGTAGTTGATAAAGGGATTGAGGTTCAAGAGAAGGAAGAAGATGAAGGTGAGGAATCTGATAAAACCATAGAAGAGAAACCGGTTGCAGATGAGGTTGTGAAGGAAGTAGTGCACGATCATGTGCACCATGCTAGATTGTCTGAGCTTGATTCAATTGCTCAACAAATAAAAGCTCTTGAGTCTATGATGGGAGATGATGGAATTAATAATGCAATGAAAATAGAGGAAGAGACGGAATCATTGGATGCAGATGAAGAAACTGTGACTAGGGAGTTTCTTCAGATGCTTGAGGAGGATCAAGACAGCAAAGGATACTTGTTCGACCAACCTGAAATTCCACCTTTACAACTTGAAGGGCATGCCGATTCTCCGGAAGATGGAGGAGAATCCGAAGTATATCTTTCTGACCTCGGTAAAGGCTTGGGTTGTGTGGTTCAAACAAGAGATGGCGGATACTTGGCTTCCATGAATCCTTTGGATGTTGTTGTGGCTAGAAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCTTTTGTGTTGGCATCGCATGAATCCGTAAGTGGGTTTGACTTGTTTCAGAAATTGGCTGGCATTGGTCTTGATGAACTCGGCTCTCAAATTTTATCCTCCTTGATGCCGATAGATGAACTGATGGGAAAAACTGCAGAGCAGATTGCTTTTGAAGGCATCGCGTCAGCTGTCGTACAAGGTAGGAACAAGGAAGGAGCAAGTTCCAGCGCTGCCCGCATAGTTTCTGCATTGAAAAGCATGTCAAACATTATCAGTTCAGGAAGGAGAGAACGAATATCAACAGGACTTTGGAATGTTGACGAAAATCCAGTTACTTCAGAGAAGCTTCTTGCTATATCAATGCAGAAGATTGAATCCATGGCAGTTGAGGCATTGAAAATTCAAGCTGACGTGGCCGAAGAAGAAGCTCCATTCGATGTTTCTGCACTCAGCTCAAAGAAAGGGGAAAGTGGGAAAGATCTTTTGGCTTCTGCTATTCCACTTGAGGATTGGATTAGAGACCAAAGCTTAAGCTACAACAAAGGTACTGCAACTGCAAGTTCTAATGGTGAACCTGAAAGAGTCACGCTGATATTGGTTGTCCAACTGCGGGATCCAATGAGACGATATGAAGAAGTTGGAGGACCTACGATGGTGCTTATTCATGCAACACGTTCTGGCACAAAGGGGGCTAAGGAGGAGGAGAAGAGGTTCAAAGTAACAAGCATGCATGTGGGTGGTTTCAAAGTTAGGAGTTCCACAAATAAGAATGCATGGGACAATGAGAAGCAAAGACTAACTGCAATGCAATGGTTAGTTGCATATGGGTTGGGAAAAGCAGGGAAGAAAGGGAAGAAGACATTGACAAAGGGACAAGACCTGCTATGGAGTATTTCGTCACGGATCGTGGCTGATATGTGGCTCAAAACCATGAGAAATCCCGATGTCAAGCTTGTAAAGTGA
Protein sequence

>Msa0575450

MADAKNNPNAQILEELEALSETLYKSHTSTTARRTASLVLPRTTPVPSIEDHNDNHATEVYSESSNKPRSRRMSLSPWRSRPKLEDGISKTETKEVVVNTSTTNLGENEKKGIWKWKPMRALSHIGMQKLSCLFSVEVVAAQDLPSSMNGLRLAVCVRKKETKDGAVKTMPSRVSQGAADFEETLFIKCHAYYTNNNHEKKFEPRPFSIYLFAVDAQELDFGRSYVDLSELIRESVEKSQQGARVRQWDTSFKLSGKAKGGELVVKLGFQIVEKDGGVDIYNNTNNNSPMQNSKSSKLSSLSSSFARKQSKSSFSVPSPRMTSRNDAWTPSHSHEGGSAIQGMDDLNLDDPNPVHDSSSSVQKVDDHIEQVEDFDLPDFEVVDKGIEVQEKEEDEGEESDKTIEEKPVADEVVKEVVHDHVHHARLSELDSIAQQIKALESMMGDDGINNAMKIEEETESLDADEETVTREFLQMLEEDQDSKGYLFDQPEIPPLQLEGHADSPEDGGESEVYLSDLGKGLGCVVQTRDGGYLASMNPLDVVVARKDTPKLAMQMSKPFVLASHESVSGFDLFQKLAGIGLDELGSQILSSLMPIDELMGKTAEQIAFEGIASAVVQGRNKEGASSSAARIVSALKSMSNIISSGRRERISTGLWNVDENPVTSEKLLAISMQKIESMAVEALKIQADVAEEEAPFDVSALSSKKGESGKDLLASAIPLEDWIRDQSLSYNKGTATASSNGEPERVTLILVVQLRDPMRRYEEVGGPTMVLIHATRSGTKGAKEEEKRFKVTSMHVGGFKVRSSTNKNAWDNEKQRLTAMQWLVAYGLGKAGKKGKKTLTKGQDLLWSISSRIVADMWLKTMRNPDVKLVK*