Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114610 | sp|I6YGS0|EPHA_MYCTU | 33.636 | 330 | 179 | 8 | 1 | 304 | 1 | 316 | 8.57e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114610 | G7JUF4 | 90.741 | 324 | 11 | 2 | 1 | 307 | 1 | 322 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0114610 | 0.802119 | 6.524933e-49 | -8.615850e-47 |
| Msa0032770 | Msa0114610 | 0.849292 | 3.551236e-60 | -8.615850e-47 |
| Msa0048950 | Msa0114610 | 0.802484 | 5.489762e-49 | -8.615850e-47 |
| Msa0059880 | Msa0114610 | 0.843151 | 1.671659e-58 | -8.615850e-47 |
| Msa0064990 | Msa0114610 | 0.807474 | 4.966700e-50 | -8.615850e-47 |
| Msa0072030 | Msa0114610 | 0.818499 | 1.898497e-52 | -8.615850e-47 |
| Msa0114610 | Msa0120070 | 0.802417 | 5.665356e-49 | -8.615850e-47 |
| Msa0114610 | Msa0131460 | 0.803537 | 3.324645e-49 | -8.615850e-47 |
| Msa0114610 | Msa0140270 | 0.830909 | 2.251707e-55 | -8.615850e-47 |
| Msa0114610 | Msa0150910 | 0.831388 | 1.717378e-55 | -8.615850e-47 |
| Msa0114610 | Msa0150920 | 0.815518 | 8.875228e-52 | -8.615850e-47 |
| Msa0114610 | Msa0163340 | 0.817749 | 2.806341e-52 | -8.615850e-47 |
| Msa0114610 | Msa0163370 | 0.812782 | 3.565546e-51 | -8.615850e-47 |
| Msa0114610 | Msa0172890 | 0.858070 | 1.060243e-62 | -8.615850e-47 |
| Msa0114610 | Msa0190670 | 0.810467 | 1.135980e-50 | -8.615850e-47 |
| Msa0114610 | Msa0190890 | 0.818376 | 2.024148e-52 | -8.615850e-47 |
| Msa0114610 | Msa0194230 | 0.801780 | 7.662027e-49 | -8.615850e-47 |
| Msa0114610 | Msa0195580 | 0.802201 | 6.277697e-49 | -8.615850e-47 |
| Msa0114610 | Msa0212550 | 0.822995 | 1.757201e-53 | -8.615850e-47 |
| Msa0114610 | Msa0233210 | 0.810588 | 1.070016e-50 | -8.615850e-47 |
| Msa0114610 | Msa0252930 | 0.838486 | 2.795450e-57 | -8.615850e-47 |
| Msa0114610 | Msa0274250 | 0.812668 | 3.776712e-51 | -8.615850e-47 |
| Msa0114610 | Msa0274260 | 0.819294 | 1.252294e-52 | -8.615850e-47 |
| Msa0114610 | Msa0278480 | 0.841348 | 5.019027e-58 | -8.615850e-47 |
| Msa0114610 | Msa0281190 | 0.821077 | 4.890634e-53 | -8.615850e-47 |
| Msa0114610 | Msa0287720 | 0.802360 | 5.820542e-49 | -8.615850e-47 |
| Msa0114610 | Msa0319830 | 0.803593 | 3.237318e-49 | -8.615850e-47 |
| Msa0114610 | Msa0328100 | 0.807164 | 5.777409e-50 | -8.615850e-47 |
| Msa0114610 | Msa0328870 | 0.806740 | 7.101783e-50 | -8.615850e-47 |
| Msa0114610 | Msa0349910 | 0.807250 | 5.541110e-50 | -8.615850e-47 |
| Msa0114610 | Msa0374040 | 0.808617 | 2.836448e-50 | -8.615850e-47 |
| Msa0114610 | Msa0414480 | 0.809637 | 1.715020e-50 | -8.615850e-47 |
| Msa0114610 | Msa0430320 | 0.814022 | 1.903803e-51 | -8.615850e-47 |
| Msa0114610 | Msa0430460 | 0.800788 | 1.222924e-48 | -8.615850e-47 |
| Msa0114610 | Msa0464310 | 0.801043 | 1.084613e-48 | -8.615850e-47 |
| Msa0114610 | Msa0472390 | 0.814547 | 1.457313e-51 | -8.615850e-47 |
| Msa0114610 | Msa0484410 | 0.806286 | 8.854501e-50 | -8.615850e-47 |
| Msa0114610 | Msa0535570 | 0.813119 | 3.008248e-51 | -8.615850e-47 |
| Msa0114610 | Msa0538050 | -0.802460 | 5.552575e-49 | -8.615850e-47 |
| Msa0114610 | Msa0543740 | 0.810421 | 1.162183e-50 | -8.615850e-47 |
| Msa0114610 | Msa0580210 | 0.824710 | 6.965067e-54 | -8.615850e-47 |
| Msa0114610 | Msa0587870 | 0.813652 | 2.297211e-51 | -8.615850e-47 |
| Msa0114610 | Msa0591490 | 0.806440 | 8.216370e-50 | -8.615850e-47 |
| Msa0114610 | Msa0599600 | 0.800074 | 1.709228e-48 | -8.615850e-47 |
| Msa0114610 | Msa0602050 | 0.812839 | 3.464457e-51 | -8.615850e-47 |
| Msa0114610 | Msa0631700 | 0.806939 | 6.448169e-50 | -8.615850e-47 |
| Msa0114610 | Msa0643190 | 0.831842 | 1.327605e-55 | -8.615850e-47 |
| Msa0114610 | Msa0668220 | 0.805892 | 1.071663e-49 | -8.615850e-47 |
| Msa0114610 | Msa0670360 | 0.812382 | 4.360972e-51 | -8.615850e-47 |
| Msa0114610 | Msa0671640 | 0.809326 | 2.000131e-50 | -8.615850e-47 |
| Msa0114610 | Msa0678620 | 0.815284 | 1.000358e-51 | -8.615850e-47 |
| Msa0114610 | Msa0705520 | 0.820856 | 5.499557e-53 | -8.615850e-47 |
| Msa0114610 | Msa0727480 | 0.802973 | 4.349705e-49 | -8.615850e-47 |
| Msa0114610 | Msa0735280 | 0.809383 | 1.944620e-50 | -8.615850e-47 |
| Msa0114610 | Msa0768670 | 0.815206 | 1.041261e-51 | -8.615850e-47 |
| Msa0114610 | Msa0777060 | 0.805157 | 1.528577e-49 | -8.615850e-47 |
| Msa0114610 | Msa0777070 | 0.826048 | 3.358554e-54 | -8.615850e-47 |
| Msa0114610 | Msa0777250 | 0.815359 | 9.625512e-52 | -8.615850e-47 |
| Msa0114610 | Msa0814160 | 0.853126 | 2.936309e-61 | -8.615850e-47 |
| Msa0114610 | Msa0814230 | 0.828732 | 7.635551e-55 | -8.615850e-47 |
| Msa0114610 | Msa0822410 | 0.808486 | 3.024143e-50 | -8.615850e-47 |
| Msa0114610 | Msa0832750 | 0.813138 | 2.978384e-51 | -8.615850e-47 |
| Msa0114610 | Msa0841670 | 0.800372 | 1.486480e-48 | -8.615850e-47 |
| Msa0114610 | Msa0854840 | 0.864786 | 9.460933e-65 | -8.615850e-47 |
| Msa0114610 | Msa0861730 | 0.814119 | 1.811893e-51 | -8.615850e-47 |
| Msa0114610 | Msa0883640 | 0.804400 | 2.199809e-49 | -8.615850e-47 |
| Msa0114610 | Msa0896920 | 0.801636 | 8.202082e-49 | -8.615850e-47 |
| Msa0114610 | Msa0902340 | 0.805829 | 1.104929e-49 | -8.615850e-47 |
| Msa0114610 | Msa0910830 | 0.823627 | 1.250764e-53 | -8.615850e-47 |
| Msa0114610 | Msa0913550 | 0.831023 | 2.111172e-55 | -8.615850e-47 |
| Msa0114610 | Msa0941120 | 0.803268 | 3.780040e-49 | -8.615850e-47 |
| Msa0114610 | Msa0951150 | 0.822987 | 1.764982e-53 | -8.615850e-47 |
| Msa0114610 | Msa0960090 | 0.805203 | 1.495213e-49 | -8.615850e-47 |
| Msa0114610 | Msa0985700 | 0.803621 | 3.195026e-49 | -8.615850e-47 |
| Msa0114610 | Msa0987640 | 0.826346 | 2.852447e-54 | -8.615850e-47 |
| Msa0114610 | Msa1006170 | 0.844328 | 8.091613e-59 | -8.615850e-47 |
| Msa0114610 | Msa1021620 | 0.808087 | 3.678873e-50 | -8.615850e-47 |
| Msa0114610 | Msa1022510 | 0.811744 | 6.008051e-51 | -8.615850e-47 |
| Msa0114610 | Msa1024350 | 0.826440 | 2.709508e-54 | -8.615850e-47 |
| Msa0114610 | Msa1061670 | 0.811553 | 6.608888e-51 | -8.615850e-47 |
| Msa0114610 | Msa1068080 | 0.806642 | 7.449328e-50 | -8.615850e-47 |
| Msa0114610 | Msa1078090 | 0.805895 | 1.070273e-49 | -8.615850e-47 |
| Msa0114610 | Msa1084340 | -0.801727 | 7.856010e-49 | -8.615850e-47 |
| Msa0114610 | Msa1087370 | 0.806662 | 7.378810e-50 | -8.615850e-47 |
| Msa0114610 | Msa1087380 | 0.819806 | 9.570972e-53 | -8.615850e-47 |
| Msa0114610 | Msa1090150 | 0.804546 | 2.050613e-49 | -8.615850e-47 |
| Msa0114610 | Msa1106680 | 0.822440 | 2.366377e-53 | -8.615850e-47 |
| Msa0114610 | Msa1106960 | 0.808101 | 3.653684e-50 | -8.615850e-47 |
| Msa0114610 | Msa1109890 | 0.810278 | 1.248321e-50 | -8.615850e-47 |
| Msa0114610 | Msa1156240 | 0.802444 | 5.593914e-49 | -8.615850e-47 |
| Msa0114610 | Msa1170320 | 0.832052 | 1.177813e-55 | -8.615850e-47 |
| Msa0114610 | Msa1177090 | 0.803947 | 2.733451e-49 | -8.615850e-47 |
| Msa0114610 | Msa1214960 | 0.808398 | 3.157841e-50 | -8.615850e-47 |
| Msa0114610 | Msa1269050 | 0.818616 | 1.786147e-52 | -8.615850e-47 |
| Msa0114610 | Msa1323030 | 0.840662 | 7.597878e-58 | -8.615850e-47 |
| Msa0114610 | Msa1323120 | 0.817511 | 3.175557e-52 | -8.615850e-47 |
| Msa0114610 | Msa1343590 | 0.803570 | 3.273824e-49 | -8.615850e-47 |
| Msa0114610 | Msa1353130 | 0.803299 | 3.724751e-49 | -8.615850e-47 |
| Msa0114610 | Msa1373560 | 0.807012 | 6.222480e-50 | -8.615850e-47 |
| Msa0114610 | Msa1445900 | 0.823865 | 1.100485e-53 | -8.615850e-47 |
| Msa0114610 | Msa1459610 | 0.815534 | 8.800870e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114610 | MtrunA17_Chr4g0000111 | 90.741 | 324 | 11 | 2 | 1 | 307 | 1 | 322 | 0.0 | 592 |
| Msa0114610 | MtrunA17_Chr7g0272501 | 67.802 | 323 | 84 | 6 | 1 | 307 | 1 | 319 | 6.79e-159 | 446 |
| Msa0114610 | MtrunA17_Chr7g0272531 | 67.492 | 323 | 85 | 6 | 1 | 307 | 31 | 349 | 8.47e-159 | 447 |
| Msa0114610 | MtrunA17_Chr7g0272481 | 68.111 | 323 | 83 | 6 | 1 | 307 | 1 | 319 | 4.18e-158 | 444 |
| Msa0114610 | MtrunA17_Chr7g0272171 | 67.183 | 323 | 86 | 6 | 1 | 307 | 1 | 319 | 7.77e-157 | 441 |
| Msa0114610 | MtrunA17_Chr7g0272181 | 65.944 | 323 | 90 | 6 | 1 | 307 | 1 | 319 | 1.05e-154 | 435 |
| Msa0114610 | MtrunA17_Chr7g0272431 | 64.396 | 323 | 95 | 6 | 1 | 307 | 1 | 319 | 4.55e-147 | 416 |
| Msa0114610 | MtrunA17_Chr7g0272441 | 63.158 | 323 | 99 | 6 | 1 | 307 | 1 | 319 | 1.77e-144 | 409 |
| Msa0114610 | MtrunA17_Chr7g0272451 | 63.158 | 323 | 96 | 7 | 1 | 307 | 1 | 316 | 2.74e-141 | 401 |
| Msa0114610 | MtrunA17_Chr7g0269471 | 53.416 | 322 | 130 | 6 | 1 | 307 | 1 | 317 | 7.03e-118 | 342 |
| Msa0114610 | MtrunA17_Chr4g0067581 | 52.941 | 323 | 132 | 5 | 1 | 307 | 37 | 355 | 2.86e-117 | 342 |
| Msa0114610 | MtrunA17_Chr1g0192291 | 86.076 | 158 | 5 | 1 | 1 | 141 | 1 | 158 | 2.39e-94 | 276 |
| Msa0114610 | MtrunA17_Chr8g0372491 | 41.121 | 321 | 169 | 6 | 1 | 307 | 3 | 317 | 2.91e-77 | 238 |
| Msa0114610 | MtrunA17_Chr7g0272471 | 68.153 | 157 | 33 | 4 | 1 | 141 | 1 | 156 | 1.17e-67 | 208 |
| Msa0114610 | MtrunA17_Chr2g0324161 | 34.154 | 325 | 180 | 10 | 1 | 306 | 1 | 310 | 3.23e-52 | 174 |
| Msa0114610 | MtrunA17_Chr2g0324141 | 35.077 | 325 | 177 | 11 | 1 | 306 | 1 | 310 | 8.29e-52 | 172 |
| Msa0114610 | MtrunA17_Chr4g0047701 | 32.407 | 324 | 186 | 9 | 1 | 306 | 1 | 309 | 1.84e-50 | 169 |
| Msa0114610 | MtrunA17_Chr4g0047681 | 32.822 | 326 | 182 | 9 | 1 | 306 | 1 | 309 | 3.94e-50 | 168 |
| Msa0114610 | MtrunA17_Chr7g0272461 | 54.630 | 108 | 46 | 2 | 162 | 269 | 1 | 105 | 3.19e-31 | 114 |
| Msa0114610 | MtrunA17_Chr7g0272391 | 45.299 | 117 | 41 | 3 | 147 | 263 | 2 | 95 | 1.86e-21 | 87.8 |
| Msa0114610 | MtrunA17_Chr3g0086531 | 53.425 | 73 | 20 | 2 | 79 | 137 | 1 | 73 | 8.05e-16 | 72.0 |
| Msa0114610 | MtrunA17_Chr7g0272511 | 68.421 | 38 | 12 | 0 | 266 | 303 | 29 | 66 | 1.52e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114610 | AT3G05600.1 | 56.881 | 327 | 118 | 8 | 1 | 307 | 1 | 324 | 1.91e-127 | 367 |
| Msa0114610 | AT4G02340.1 | 51.242 | 322 | 136 | 6 | 1 | 307 | 1 | 316 | 1.86e-116 | 338 |
| Msa0114610 | AT4G15960.1 | 49.085 | 328 | 142 | 7 | 1 | 307 | 51 | 374 | 9.59e-102 | 303 |
| Msa0114610 | AT2G26740.1 | 51.070 | 327 | 131 | 8 | 4 | 307 | 1 | 321 | 4.63e-99 | 294 |
| Msa0114610 | AT2G26750.1 | 49.693 | 326 | 136 | 8 | 4 | 307 | 1 | 320 | 1.50e-94 | 283 |
| Msa0114610 | AT3G05600.2 | 57.551 | 245 | 82 | 7 | 1 | 225 | 1 | 243 | 2.82e-93 | 277 |
| Msa0114610 | AT4G15955.3 | 46.084 | 332 | 121 | 9 | 3 | 307 | 4 | 304 | 3.51e-85 | 258 |
| Msa0114610 | AT3G51000.1 | 41.945 | 329 | 154 | 10 | 3 | 307 | 4 | 319 | 1.95e-77 | 239 |
| Msa0114610 | AT4G15955.2 | 54.802 | 177 | 53 | 6 | 3 | 153 | 4 | 179 | 1.45e-54 | 176 |
| Msa0114610 | AT4G15955.1 | 54.762 | 168 | 49 | 6 | 3 | 144 | 4 | 170 | 3.75e-51 | 167 |
Find 93 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1_3:-31790321 | Msa0114610:CDS |
| TGATGTCTTGTGCTGCTTCT+TGG | 0.213872 | 1_3:+31787213 | None:intergenic |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1_3:-31789781 | Msa0114610:intron |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1_3:-31790366 | Msa0114610:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1_3:+31789828 | None:intergenic |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1_3:-31790322 | Msa0114610:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1_3:-31787581 | Msa0114610:CDS |
| CCAGTTCCATACCCTCCTTT+TGG | 0.320325 | 1_3:+31787674 | None:intergenic |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1_3:-31787276 | Msa0114610:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1_3:-31789810 | Msa0114610:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1_3:+31790311 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1_3:-31790464 | Msa0114610:CDS |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1_3:-31787572 | Msa0114610:CDS |
| ATATCTTATTCTTACCATCT+TGG | 0.383744 | 1_3:-31787631 | Msa0114610:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1_3:+31789827 | None:intergenic |
| TGGAAAAGCCGAAGCCGAAT+TGG | 0.398454 | 1_3:-31787765 | Msa0114610:CDS |
| CCAAAAGGAGGGTATGGAAC+TGG | 0.402502 | 1_3:-31787674 | Msa0114610:CDS |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1_3:-31790382 | Msa0114610:CDS |
| TACTCCAGCCAATTCGGCTT+CGG | 0.419392 | 1_3:+31787757 | None:intergenic |
| GTACTGGTAAAGTACATTAC+AGG | 0.427331 | 1_3:-31787359 | Msa0114610:CDS |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1_3:+31787604 | None:intergenic |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1_3:-31790391 | Msa0114610:CDS |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1_3:-31790314 | Msa0114610:CDS |
| TGTACCTTGTCGGACATGAT+TGG | 0.443115 | 1_3:-31790196 | Msa0114610:CDS |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1_3:+31790256 | None:intergenic |
| AATAAGATATCCTGCATATC+CGG | 0.454796 | 1_3:+31787644 | None:intergenic |
| GTTCCATTCCGACCCTTCCT+TGG | 0.455873 | 1_3:-31789858 | Msa0114610:CDS |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1_3:+31789845 | None:intergenic |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1_3:+31789841 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1_3:+31790334 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1_3:-31787281 | Msa0114610:CDS |
| TGGATTCAATCCGGATATGC+AGG | 0.474601 | 1_3:-31787654 | Msa0114610:CDS |
| TGTTCCAGGTTTGGAGGAAG+TGG | 0.476149 | 1_3:-31787267 | Msa0114610:CDS |
| CTACGGTGAAACTGAAGCTT+CGG | 0.479527 | 1_3:-31790297 | Msa0114610:CDS |
| AACACCTACTCCAGCCAATT+CGG | 0.482718 | 1_3:+31787751 | None:intergenic |
| GTACCTTGTCGGACATGATT+GGG | 0.482847 | 1_3:-31790195 | Msa0114610:CDS |
| AAAATGCATGTTGCAGAGAA+AGG | 0.492527 | 1_3:-31790437 | Msa0114610:CDS |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1_3:+31790265 | None:intergenic |
| TTTGGAGGAAGTGGTTGTGC+AGG | 0.503362 | 1_3:-31787258 | Msa0114610:CDS |
| CATTACAGGAGATTGTGGTT+TGG | 0.505307 | 1_3:-31787345 | Msa0114610:CDS |
| AGTAGGAGTGGTAAATGTAC+TGG | 0.505564 | 1_3:-31787375 | Msa0114610:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1_3:+31789797 | None:intergenic |
| GAGGAAGTGGTTGTGCAGGA+AGG | 0.517437 | 1_3:-31787254 | Msa0114610:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1_3:+31789846 | None:intergenic |
| AAAGCCGAAGCCGAATTGGC+TGG | 0.521985 | 1_3:-31787761 | Msa0114610:CDS |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1_3:+31790380 | None:intergenic |
| CATGATTGGGGTGCGATCAT+CGG | 0.526291 | 1_3:-31790182 | Msa0114610:CDS |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1_3:+31789829 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1_3:-31787569 | Msa0114610:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1_3:-31790351 | Msa0114610:CDS |
| AGGAAGTGGTTGTGCAGGAA+GGG | 0.538638 | 1_3:-31787253 | Msa0114610:CDS |
| ACAACCACTTCCTCCAAACC+TGG | 0.541024 | 1_3:+31787263 | None:intergenic |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1_3:+31790312 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1_3:+31789855 | None:intergenic |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1_3:-31790407 | Msa0114610:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1_3:-31787273 | Msa0114610:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1_3:-31790350 | Msa0114610:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1_3:+31790407 | None:intergenic |
| AAGTACATTACAGGAGATTG+TGG | 0.554055 | 1_3:-31787350 | Msa0114610:CDS |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1_3:-31787392 | Msa0114610:CDS |
| GTGGACAAAGTGTACCTTGT+CGG | 0.558093 | 1_3:-31790206 | Msa0114610:CDS |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1_3:+31789850 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1_3:-31790336 | Msa0114610:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1_3:-31790230 | Msa0114610:CDS |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1_3:-31787568 | Msa0114610:CDS |
| TCTTCTTCGGAAAGCCAAGA+TGG | 0.563903 | 1_3:+31787617 | None:intergenic |
| TTTGGGAAAATTGGAGGACC+GGG | 0.570933 | 1_3:+31787692 | None:intergenic |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1_3:-31787420 | Msa0114610:intron |
| GTATGGAACTGGATTCAATC+CGG | 0.573575 | 1_3:-31787663 | Msa0114610:CDS |
| TGATAACATTGATAGGAACC+TGG | 0.573596 | 1_3:-31787785 | Msa0114610:intron |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1_3:+31787386 | None:intergenic |
| ATGATGACAACGAGGAAACC+CGG | 0.579962 | 1_3:-31787710 | Msa0114610:CDS |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1_3:+31790324 | None:intergenic |
| ATACACTACACCGAGTATGA+AGG | 0.588126 | 1_3:-31787321 | Msa0114610:CDS |
| ATTGGGGTGCGATCATCGGT+TGG | 0.592371 | 1_3:-31790178 | Msa0114610:intron |
| AGGATATATTCCTTCATACT+CGG | 0.611989 | 1_3:+31787311 | None:intergenic |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1_3:+31790357 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1_3:+31790381 | None:intergenic |
| CATGTTGCAGAGAAAGGAGA+AGG | 0.616899 | 1_3:-31790431 | Msa0114610:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1_3:+31790313 | None:intergenic |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1_3:-31790320 | Msa0114610:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1_3:-31787305 | Msa0114610:CDS |
| CACCCCAATCATGTCCGACA+AGG | 0.629611 | 1_3:+31790192 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1_3:-31787387 | Msa0114610:CDS |
| TACCTTGTCGGACATGATTG+GGG | 0.642774 | 1_3:-31790194 | Msa0114610:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1_3:-31787302 | Msa0114610:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1_3:-31790423 | Msa0114610:CDS |
| GAAGCCGAATTGGCTGGAGT+AGG | 0.676454 | 1_3:-31787755 | Msa0114610:CDS |
| ACTCATTGACTCTCTAGGTG+TGG | 0.677971 | 1_3:-31790225 | Msa0114610:CDS |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1_3:+31790246 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1_3:+31787291 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1_3:-31787403 | Msa0114610:CDS |
| TGCGTAACATGATGACAACG+AGG | 0.737897 | 1_3:-31787718 | Msa0114610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAAATTAAAATA+GGG | + | chr1_3:31789159-31789178 | None:intergenic | 0.0% |
| !! | TAAAAAAAATAAATTAAAAT+AGG | + | chr1_3:31789160-31789179 | None:intergenic | 0.0% |
| !! | TAATGTCTTTAAATTAAAAA+AGG | + | chr1_3:31787607-31787626 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTGACAAA+GGG | - | chr1_3:31788042-31788061 | Msa0114610:intron | 10.0% |
| !! | TATAAATATCAATAAATAAG+GGG | + | chr1_3:31788128-31788147 | None:intergenic | 10.0% |
| !! | ATATATATATATATATATGC+TGG | - | chr1_3:31788181-31788200 | Msa0114610:intron | 10.0% |
| !! | ATCAATAAATAAATAAATGA+GGG | + | chr1_3:31788228-31788247 | None:intergenic | 10.0% |
| !!! | TTTTAGAAACTATAATATTT+TGG | + | chr1_3:31789131-31789150 | None:intergenic | 10.0% |
| !!! | TTAATAAATGTAATTGATTT+TGG | + | chr1_3:31789454-31789473 | None:intergenic | 10.0% |
| !!! | TATTAACATTGTTTTTTAAT+CGG | + | chr1_3:31789656-31789675 | None:intergenic | 10.0% |
| !! | TACTTTAGTATATATAAAGA+CGG | - | chr1_3:31787923-31787942 | Msa0114610:intron | 15.0% |
| !!! | CATTTTTTTTTTTTTGACAA+AGG | - | chr1_3:31788041-31788060 | Msa0114610:intron | 15.0% |
| !! | TCAATAAATAAATAAATGAG+GGG | + | chr1_3:31788227-31788246 | None:intergenic | 15.0% |
| !! | CATCAATAAATAAATAAATG+AGG | + | chr1_3:31788229-31788248 | None:intergenic | 15.0% |
| !! | AAATATTCTTAGTTTAATTC+AGG | - | chr1_3:31789253-31789272 | Msa0114610:intron | 15.0% |
| !!! | ACTAATTATTTTTCTAGAAT+CGG | + | chr1_3:31789310-31789329 | None:intergenic | 15.0% |
| !!! | GGATTCAATTTTTTAAAAAA+AGG | + | chr1_3:31789433-31789452 | None:intergenic | 15.0% |
| !! | TACTAAATACAACAAAATTT+AGG | - | chr1_3:31789828-31789847 | Msa0114610:CDS | 15.0% |
| !! | ACTTTAGTATATATAAAGAC+GGG | - | chr1_3:31787924-31787943 | Msa0114610:intron | 20.0% |
| !! | AAAGGATAAGAAAAGATTAA+CGG | + | chr1_3:31788327-31788346 | None:intergenic | 20.0% |
| !! | CTATACAAAAACAACTAAAA+AGG | + | chr1_3:31788345-31788364 | None:intergenic | 20.0% |
| !! | TAATAAAGGAACACAATATT+AGG | + | chr1_3:31788425-31788444 | None:intergenic | 20.0% |
| !!! | AAAATCTGAAACAAATGTAT+TGG | - | chr1_3:31788644-31788663 | Msa0114610:intron | 20.0% |
| !!! | TTGTTAAAAACAAAAGTACA+AGG | - | chr1_3:31788998-31789017 | Msa0114610:intron | 20.0% |
| !!! | TAAAAACTCATGATTTTGTA+GGG | + | chr1_3:31789070-31789089 | None:intergenic | 20.0% |
| !!! | TTCAGTCTCTAAAATTTTAA+TGG | - | chr1_3:31789092-31789111 | Msa0114610:intron | 20.0% |
| !!! | TAGAAACTATAATATTTTGG+AGG | + | chr1_3:31789128-31789147 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGCATTTTATA+GGG | + | chr1_3:31789217-31789236 | None:intergenic | 20.0% |
| !!! | TTATGATGTTTGCATTTTAT+AGG | + | chr1_3:31789218-31789237 | None:intergenic | 20.0% |
| !! | TTTCATTAAAAGAGAATACA+TGG | - | chr1_3:31789354-31789373 | Msa0114610:intron | 20.0% |
| !! | TTCATTAAAAGAGAATACAT+GGG | - | chr1_3:31789355-31789374 | Msa0114610:intron | 20.0% |
| !! | TAAAAAGAATACAATCATAG+TGG | - | chr1_3:31789488-31789507 | Msa0114610:intron | 20.0% |
| !! | AAAAAGAATACAATCATAGT+GGG | - | chr1_3:31789489-31789508 | Msa0114610:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | - | chr1_3:31789865-31789884 | Msa0114610:intron | 20.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | + | chr1_3:31790056-31790075 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGACAAAGGGTT+TGG | - | chr1_3:31788047-31788066 | Msa0114610:intron | 25.0% |
| !!! | AATTTGTTGACCCAAAATTT+TGG | - | chr1_3:31788252-31788271 | Msa0114610:intron | 25.0% |
| !! | AGATTCAATGCCAAAATTTT+GGG | + | chr1_3:31788265-31788284 | None:intergenic | 25.0% |
| ! | AGGTCAACACAAAATAATAA+AGG | + | chr1_3:31788439-31788458 | None:intergenic | 25.0% |
| ! | ATGTATTGGATGAAAACAAA+AGG | - | chr1_3:31788658-31788677 | Msa0114610:intron | 25.0% |
| ! | TGTATTGGATGAAAACAAAA+GGG | - | chr1_3:31788659-31788678 | Msa0114610:intron | 25.0% |
| !!! | TTTTGATTTTGACTGTGTTA+TGG | - | chr1_3:31788773-31788792 | Msa0114610:intron | 25.0% |
| !! | CTAAAAACTCATGATTTTGT+AGG | + | chr1_3:31789071-31789090 | None:intergenic | 25.0% |
| !! | CTACAAAATCATGAGTTTTT+AGG | - | chr1_3:31789069-31789088 | Msa0114610:intron | 25.0% |
| !! | ATGATGTTTGCATTTTATAG+GGG | + | chr1_3:31789216-31789235 | None:intergenic | 25.0% |
| !! | TAGAATCGGATTTATGATTT+TGG | + | chr1_3:31789296-31789315 | None:intergenic | 25.0% |
| !! | TAATATGGTCCTCAATTTTA+AGG | + | chr1_3:31789766-31789785 | None:intergenic | 25.0% |
| ! | TTAAAATTGAGGACCATATT+AGG | - | chr1_3:31789765-31789784 | Msa0114610:intron | 25.0% |
| ! | TAAAATTGAGGACCATATTA+GGG | - | chr1_3:31789766-31789785 | Msa0114610:intron | 25.0% |
| ! | TTTGATTCCATGTCTTTATA+TGG | + | chr1_3:31789793-31789812 | None:intergenic | 25.0% |
| ! | ATATCTTATTCTTACCATCT+TGG | - | chr1_3:31790026-31790045 | Msa0114610:intron | 25.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | - | chr1_3:31790076-31790095 | Msa0114610:intron | 25.0% |
| CACAGAATAGTAGAAGTAAA+TGG | - | chr1_3:31787193-31787212 | Msa0114610:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | + | chr1_3:31787831-31787850 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | + | chr1_3:31787832-31787851 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | + | chr1_3:31787833-31787852 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | + | chr1_3:31787863-31787882 | None:intergenic | 30.0% | |
| TAAAATGAAGGACCATGTTA+GGG | + | chr1_3:31787953-31787972 | None:intergenic | 30.0% | |
| TTAAAATGAAGGACCATGTT+AGG | + | chr1_3:31787954-31787973 | None:intergenic | 30.0% | |
| ! | TAACATGGTCCTTCATTTTA+AGG | - | chr1_3:31787953-31787972 | Msa0114610:intron | 30.0% |
| ! | AACATGGTCCTTCATTTTAA+GGG | - | chr1_3:31787954-31787973 | Msa0114610:intron | 30.0% |
| AACCTCATCAATTTACCTAT+TGG | - | chr1_3:31787987-31788006 | Msa0114610:intron | 30.0% | |
| ! | GAGATTCAATGCCAAAATTT+TGG | + | chr1_3:31788266-31788285 | None:intergenic | 30.0% |
| ! | TGATCTGGTTTACTCAATAT+TGG | - | chr1_3:31788394-31788413 | Msa0114610:intron | 30.0% |
| !! | TGTTGGAGTCTTTTATTTGT+GGG | - | chr1_3:31788489-31788508 | Msa0114610:intron | 30.0% |
| !!! | TGTGGGTATGTTGTTTTTTT+TGG | - | chr1_3:31788506-31788525 | Msa0114610:intron | 30.0% |
| ATAAACAACACACAGATCAA+AGG | + | chr1_3:31788608-31788627 | None:intergenic | 30.0% | |
| GTATTGGATGAAAACAAAAG+GGG | - | chr1_3:31788660-31788679 | Msa0114610:intron | 30.0% | |
| AAAGTTAAAACTCAAGCAAC+CGG | - | chr1_3:31788821-31788840 | Msa0114610:intron | 30.0% | |
| !! | CAAAAGTACAAGGTCAATTT+TGG | - | chr1_3:31789008-31789027 | Msa0114610:intron | 30.0% |
| !! | TTTTATAGGGGCTATTTTAC+AGG | + | chr1_3:31789204-31789223 | None:intergenic | 30.0% |
| TCTTCTATGTGTATGTTAGT+GGG | - | chr1_3:31789329-31789348 | Msa0114610:intron | 30.0% | |
| GATATTCAACTTACATCCAA+TGG | - | chr1_3:31789542-31789561 | Msa0114610:intron | 30.0% | |
| ATAAAAATCAAGTCATGCAC+CGG | - | chr1_3:31789594-31789613 | Msa0114610:intron | 30.0% | |
| !!! | CATTGTTTTTTAATCGGCAA+AGG | + | chr1_3:31789650-31789669 | None:intergenic | 30.0% |
| AGAGGTGGACAAATAAAAAT+AGG | - | chr1_3:31789698-31789717 | Msa0114610:intron | 30.0% | |
| GACAAATAAAAATAGGTGAC+CGG | - | chr1_3:31789705-31789724 | Msa0114610:intron | 30.0% | |
| !!! | TCAATTTTAAGGTTCACCAA+TGG | + | chr1_3:31789755-31789774 | None:intergenic | 30.0% |
| ATTGGTGAACCTTAAAATTG+AGG | - | chr1_3:31789754-31789773 | Msa0114610:intron | 30.0% | |
| TCTTTATATGGTCCCTAATA+TGG | + | chr1_3:31789781-31789800 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | + | chr1_3:31789933-31789952 | None:intergenic | 30.0% | |
| AATAAGATATCCTGCATATC+CGG | + | chr1_3:31790016-31790035 | None:intergenic | 30.0% | |
| AGGATATATTCCTTCATACT+CGG | + | chr1_3:31790349-31790368 | None:intergenic | 30.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | - | chr1_3:31787220-31787239 | Msa0114610:CDS | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | - | chr1_3:31787876-31787895 | Msa0114610:intron | 35.0% | |
| AAAATGAAGGACCATGTTAG+GGG | + | chr1_3:31787952-31787971 | None:intergenic | 35.0% | |
| CTCCAATAGGTAAATTGATG+AGG | + | chr1_3:31787992-31788011 | None:intergenic | 35.0% | |
| ATCAATTTACCTATTGGAGC+CGG | - | chr1_3:31787993-31788012 | Msa0114610:intron | 35.0% | |
| AAACCCAACAAAATGGTAAC+CGG | + | chr1_3:31788015-31788034 | None:intergenic | 35.0% | |
| GATATCCAAACCCAACAAAA+TGG | + | chr1_3:31788022-31788041 | None:intergenic | 35.0% | |
| TGTTGGGTATGAAAAGGAAT+GGG | + | chr1_3:31788291-31788310 | None:intergenic | 35.0% | |
| ATGTTGGGTATGAAAAGGAA+TGG | + | chr1_3:31788292-31788311 | None:intergenic | 35.0% | |
| TTTGGATGTTGGGTATGAAA+AGG | + | chr1_3:31788297-31788316 | None:intergenic | 35.0% | |
| ! | AAGATTAACGGTGGATGTTT+TGG | + | chr1_3:31788315-31788334 | None:intergenic | 35.0% |
| GGATAAGAAAAGATTAACGG+TGG | + | chr1_3:31788324-31788343 | None:intergenic | 35.0% | |
| TTTCAAAAGGGAAGAGACAA+AGG | + | chr1_3:31788459-31788478 | None:intergenic | 35.0% | |
| !! | CACACACGTTGATTTCAAAA+GGG | + | chr1_3:31788471-31788490 | None:intergenic | 35.0% |
| !! | ACACACACGTTGATTTCAAA+AGG | + | chr1_3:31788472-31788491 | None:intergenic | 35.0% |
| ! | TTTGAAATCAACGTGTGTGT+TGG | - | chr1_3:31788472-31788491 | Msa0114610:intron | 35.0% |
| !! | GTGTTGGAGTCTTTTATTTG+TGG | - | chr1_3:31788488-31788507 | Msa0114610:intron | 35.0% |
| ! | AACATAAACAATGAAGGTGC+TGG | - | chr1_3:31788684-31788703 | Msa0114610:intron | 35.0% |
| ! | TGTTTACAACCGGGAATTTT+TGG | - | chr1_3:31788901-31788920 | Msa0114610:intron | 35.0% |
| GTACAACATCCAAAAATTCC+CGG | + | chr1_3:31788913-31788932 | None:intergenic | 35.0% | |
| TAAATATTACCCACAGCAAC+AGG | + | chr1_3:31788944-31788963 | None:intergenic | 35.0% | |
| GTCTTCTATGTGTATGTTAG+TGG | - | chr1_3:31789328-31789347 | Msa0114610:intron | 35.0% | |
| ! | ATGGGACATATTAAGTTGCT+GGG | - | chr1_3:31789373-31789392 | Msa0114610:intron | 35.0% |
| ! | TTTTTAATCGGCAAAGGCTA+CGG | + | chr1_3:31789644-31789663 | None:intergenic | 35.0% |
| ATAACCAAAGCCTGAAAAAG+AGG | - | chr1_3:31789680-31789699 | Msa0114610:intron | 35.0% | |
| ! | TATTTGTCCACCTCTTTTTC+AGG | + | chr1_3:31789693-31789712 | None:intergenic | 35.0% |
| GGTAAATATATGAGGTCCAT+TGG | - | chr1_3:31789736-31789755 | Msa0114610:intron | 35.0% | |
| TTAGGGACCATATAAAGACA+TGG | - | chr1_3:31789783-31789802 | Msa0114610:CDS | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | - | chr1_3:31789872-31789891 | Msa0114610:intron | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | + | chr1_3:31790220-31790239 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACTAGCTGATAA+TGG | - | chr1_3:31790218-31790237 | Msa0114610:CDS | 35.0% |
| ! | GTACTGGTAAAGTACATTAC+AGG | - | chr1_3:31790298-31790317 | Msa0114610:CDS | 35.0% |
| AAGTACATTACAGGAGATTG+TGG | - | chr1_3:31790307-31790326 | Msa0114610:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | - | chr1_3:31790352-31790371 | Msa0114610:CDS | 35.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | + | chr1_3:31787303-31787322 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | - | chr1_3:31787307-31787326 | Msa0114610:CDS | 40.0% | |
| ! | TACACCTGTTTTCACCTTGT+TGG | - | chr1_3:31787397-31787416 | Msa0114610:CDS | 40.0% |
| ATCACCAACAAGGTGAAAAC+AGG | + | chr1_3:31787404-31787423 | None:intergenic | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | + | chr1_3:31787414-31787433 | None:intergenic | 40.0% | |
| !! | ATTGCACTCATTGACTCTCT+AGG | - | chr1_3:31787427-31787446 | Msa0114610:intron | 40.0% |
| TCAAGGCCTATGTTTGTCTT+GGG | - | chr1_3:31787530-31787549 | Msa0114610:intron | 40.0% | |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | + | chr1_3:31787819-31787838 | None:intergenic | 40.0% |
| GATGCATTTCATGCCAAGTA+TGG | - | chr1_3:31787847-31787866 | Msa0114610:intron | 40.0% | |
| GGTAAATTGATGAGGTTCAC+CGG | + | chr1_3:31787984-31788003 | None:intergenic | 40.0% | |
| ! | GGTTACCATTTTGTTGGGTT+TGG | - | chr1_3:31788014-31788033 | Msa0114610:intron | 40.0% |
| GTTGGGTATGAAAAGGAATG+GGG | + | chr1_3:31788290-31788309 | None:intergenic | 40.0% | |
| AGGGGCAACATAAACAATGA+AGG | - | chr1_3:31788678-31788697 | Msa0114610:intron | 40.0% | |
| !! | ACTGTGTTATGGCTTTGAGA+GGG | - | chr1_3:31788784-31788803 | Msa0114610:intron | 40.0% |
| CTCAAGCAACCGGATTAAAA+AGG | - | chr1_3:31788831-31788850 | Msa0114610:intron | 40.0% | |
| ! | CATGGGACATATTAAGTTGC+TGG | - | chr1_3:31789372-31789391 | Msa0114610:intron | 40.0% |
| ATATATTTACCTGCTGGAGC+CGG | + | chr1_3:31789727-31789746 | None:intergenic | 40.0% | |
| CTCCAGCAGGTAAATATATG+AGG | - | chr1_3:31789728-31789747 | Msa0114610:intron | 40.0% | |
| GACCTCATATATTTACCTGC+TGG | + | chr1_3:31789733-31789752 | None:intergenic | 40.0% | |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | + | chr1_3:31789969-31789988 | None:intergenic | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | - | chr1_3:31789972-31789991 | Msa0114610:intron | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | + | chr1_3:31789977-31789996 | None:intergenic | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | - | chr1_3:31789977-31789996 | Msa0114610:intron | 40.0% |
| GTATGGAACTGGATTCAATC+CGG | - | chr1_3:31789994-31790013 | Msa0114610:intron | 40.0% | |
| ! | TTCAACAAAACTGGCTTCAC+TGG | - | chr1_3:31790085-31790104 | Msa0114610:intron | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | - | chr1_3:31790230-31790249 | Msa0114610:CDS | 40.0% |
| ! | AATGGTTACTTTCCAGGAAC+TGG | - | chr1_3:31790236-31790255 | Msa0114610:CDS | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | - | chr1_3:31790237-31790256 | Msa0114610:CDS | 40.0% |
| AGTAGGAGTGGTAAATGTAC+TGG | - | chr1_3:31790282-31790301 | Msa0114610:CDS | 40.0% | |
| CATTACAGGAGATTGTGGTT+TGG | - | chr1_3:31790312-31790331 | Msa0114610:CDS | 40.0% | |
| ATACACTACACCGAGTATGA+AGG | - | chr1_3:31790336-31790355 | Msa0114610:CDS | 40.0% | |
| AAGGAATATATCCTCGATGG+TGG | - | chr1_3:31790355-31790374 | Msa0114610:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | - | chr1_3:31790376-31790395 | Msa0114610:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | - | chr1_3:31790381-31790400 | Msa0114610:CDS | 40.0% | |
| CATGTTGCAGAGAAAGGAGA+AGG | - | chr1_3:31787226-31787245 | Msa0114610:CDS | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | - | chr1_3:31787275-31787294 | Msa0114610:CDS | 45.0% | |
| !! | GCCAAGAGTACCATAACTCA+GGG | + | chr1_3:31787279-31787298 | None:intergenic | 45.0% |
| GATTCTGGATTTGAGCTCCA+AGG | - | chr1_3:31787306-31787325 | Msa0114610:CDS | 45.0% | |
| CTACGGTGAAACTGAAGCTT+CGG | - | chr1_3:31787360-31787379 | Msa0114610:CDS | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | + | chr1_3:31787395-31787414 | None:intergenic | 45.0% | |
| !! | ACTCATTGACTCTCTAGGTG+TGG | - | chr1_3:31787432-31787451 | Msa0114610:intron | 45.0% |
| GTGGACAAAGTGTACCTTGT+CGG | - | chr1_3:31787451-31787470 | Msa0114610:intron | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | - | chr1_3:31787461-31787480 | Msa0114610:intron | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | - | chr1_3:31787462-31787481 | Msa0114610:intron | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | - | chr1_3:31787463-31787482 | Msa0114610:intron | 45.0% | |
| ACATAGGCCTTGACTCTTTC+TGG | + | chr1_3:31787523-31787542 | None:intergenic | 45.0% | |
| GTCAAGGCCTATGTTTGTCT+TGG | - | chr1_3:31787529-31787548 | Msa0114610:intron | 45.0% | |
| CAAGGCCTATGTTTGTCTTG+GGG | - | chr1_3:31787531-31787550 | Msa0114610:intron | 45.0% | |
| ACACACCCCAAGACAAACAT+AGG | + | chr1_3:31787539-31787558 | None:intergenic | 45.0% | |
| TGTTTGTCTTGGGGTGTGTT+TGG | - | chr1_3:31787540-31787559 | Msa0114610:intron | 45.0% | |
| GTTTGTCTTGGGGTGTGTTT+GGG | - | chr1_3:31787541-31787560 | Msa0114610:intron | 45.0% | |
| TGTGTTTGGGAAGAGGGTTT+AGG | - | chr1_3:31787554-31787573 | Msa0114610:CDS | 45.0% | |
| TTTGGGAAGAGGGTTTAGGA+GGG | - | chr1_3:31787558-31787577 | Msa0114610:CDS | 45.0% | |
| AAGAGGGTTTAGGAGAGGAA+GGG | + | chr1_3:31787761-31787780 | None:intergenic | 45.0% | |
| TGTGTTTGGGAAGAGGGTTT+AGG | + | chr1_3:31787554-31787573 | None:intergenic | 45.0% | |
| ! | TAAGGGTGTGTTTGGGAAGA+GGG | + | chr1_3:31787777-31787796 | None:intergenic | 45.0% |
| ! | GGAACACTAAGGGTGTGTTT+GGG | + | chr1_3:31787784-31787803 | None:intergenic | 45.0% |
| ! | TGGAACACTAAGGGTGTGTT+TGG | + | chr1_3:31787785-31787804 | None:intergenic | 45.0% |
| TTGGGGTTTCTTCCAAGGAA+GGG | + | chr1_3:31787814-31787833 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | + | chr1_3:31787815-31787834 | None:intergenic | 45.0% |
| !! | CCTTCATTTTAAGGGTCCAC+CGG | - | chr1_3:31787962-31787981 | Msa0114610:intron | 45.0% |
| AAATTGATGAGGTTCACCGG+TGG | + | chr1_3:31787981-31788000 | None:intergenic | 45.0% | |
| ! | AAATGGTAACCGGCTCCAAT+AGG | + | chr1_3:31788005-31788024 | None:intergenic | 45.0% |
| ! | GAGCCGGTTACCATTTTGTT+GGG | - | chr1_3:31788009-31788028 | Msa0114610:intron | 45.0% |
| !! | CGGTGGATGTTTTGGATGTT+GGG | + | chr1_3:31788307-31788326 | None:intergenic | 45.0% |
| !! | ACGGTGGATGTTTTGGATGT+TGG | + | chr1_3:31788308-31788327 | None:intergenic | 45.0% |
| !! | AAGGTGCTGGTTCTTGAGAA+GGG | - | chr1_3:31788697-31788716 | Msa0114610:intron | 45.0% |
| GTTGCCTGTACGAGATAATC+TGG | + | chr1_3:31788724-31788743 | None:intergenic | 45.0% | |
| !! | GACTGTGTTATGGCTTTGAG+AGG | - | chr1_3:31788783-31788802 | Msa0114610:intron | 45.0% |
| ! | GAGACGGCACCTTTTTAATC+CGG | + | chr1_3:31788843-31788862 | None:intergenic | 45.0% |
| CGGTTGTAAACATCATGCAC+GGG | + | chr1_3:31788893-31788912 | None:intergenic | 45.0% | |
| CCGGTTGTAAACATCATGCA+CGG | + | chr1_3:31788894-31788913 | None:intergenic | 45.0% | |
| CCGTGCATGATGTTTACAAC+CGG | - | chr1_3:31788891-31788910 | Msa0114610:intron | 45.0% | |
| CGTGCATGATGTTTACAACC+GGG | - | chr1_3:31788892-31788911 | Msa0114610:intron | 45.0% | |
| ACTATGCTTACCTGTTGCTG+TGG | - | chr1_3:31788931-31788950 | Msa0114610:intron | 45.0% | |
| CTATGCTTACCTGTTGCTGT+GGG | - | chr1_3:31788932-31788951 | Msa0114610:intron | 45.0% | |
| GCAAAAGCGATGTGATCCAT+TGG | + | chr1_3:31789561-31789580 | None:intergenic | 45.0% | |
| ! | AAATCAAGTCATGCACCGGT+AGG | - | chr1_3:31789598-31789617 | Msa0114610:intron | 45.0% |
| CTACGGTGCATGACCTTTAT+GGG | + | chr1_3:31789627-31789646 | None:intergenic | 45.0% | |
| ACCAAAGCCTGAAAAAGAGG+TGG | - | chr1_3:31789683-31789702 | Msa0114610:intron | 45.0% | |
| !!! | TCCACCTCTTTTTCAGGCTT+TGG | + | chr1_3:31789687-31789706 | None:intergenic | 45.0% |
| AACACCTACTCCAGCCAATT+CGG | + | chr1_3:31789909-31789928 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | - | chr1_3:31789939-31789958 | Msa0114610:intron | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | - | chr1_3:31789947-31789966 | Msa0114610:intron | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | + | chr1_3:31789968-31789987 | None:intergenic | 45.0% | |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | - | chr1_3:31789968-31789987 | Msa0114610:intron | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | + | chr1_3:31789974-31789993 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | - | chr1_3:31789971-31789990 | Msa0114610:intron | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | + | chr1_3:31789985-31790004 | None:intergenic | 45.0% |
| TGGATTCAATCCGGATATGC+AGG | - | chr1_3:31790003-31790022 | Msa0114610:intron | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | + | chr1_3:31790043-31790062 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | - | chr1_3:31790088-31790107 | Msa0114610:intron | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | - | chr1_3:31790089-31790108 | Msa0114610:intron | 45.0% |
| ACATCACCATGGAGTGAAGT+AGG | - | chr1_3:31790265-31790284 | Msa0114610:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | + | chr1_3:31790369-31790388 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | - | chr1_3:31790384-31790403 | Msa0114610:CDS | 45.0% | |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | + | chr1_3:31790447-31790466 | None:intergenic | 45.0% |
| !! | ATATAAATATCAATAAATAA+GGG | + | chr1_3:31788129-31788148 | None:intergenic | 5.0% |
| !! | TATATAAATATCAATAAATA+AGG | + | chr1_3:31788130-31788149 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTTTACAAAAAA+TGG | - | chr1_3:31789167-31789186 | Msa0114610:intron | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | + | chr1_3:31790174-31790193 | None:intergenic | 5.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | - | chr1_3:31790172-31790191 | Msa0114610:intron | 5.0% |
| AGAGAAAGGAGAAGGTCCAG+TGG | - | chr1_3:31787234-31787253 | Msa0114610:CDS | 50.0% | |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | - | chr1_3:31787250-31787269 | Msa0114610:CDS | 50.0% |
| TGCACGGTTTCCCTGAGTTA+TGG | - | chr1_3:31787266-31787285 | Msa0114610:CDS | 50.0% | |
| !! | CGCCAAGAGTACCATAACTC+AGG | + | chr1_3:31787280-31787299 | None:intergenic | 50.0% |
| CATGATTGGGGTGCGATCAT+CGG | - | chr1_3:31787475-31787494 | Msa0114610:intron | 50.0% | |
| GTTCCGACCAGAAAGAGTCA+AGG | - | chr1_3:31787513-31787532 | Msa0114610:intron | 50.0% | |
| ! | AGGCCTTGACTCTTTCTGGT+CGG | + | chr1_3:31787519-31787538 | None:intergenic | 50.0% |
| TTGGGGTGTGTTTGGGAAGA+GGG | - | chr1_3:31787548-31787567 | Msa0114610:CDS | 50.0% | |
| GTTTGGGAAGAGGGTTTAGG+AGG | - | chr1_3:31787557-31787576 | Msa0114610:CDS | 50.0% | |
| TTGGGAAGAGGGTTTAGGAG+GGG | - | chr1_3:31787559-31787578 | Msa0114610:CDS | 50.0% | |
| AAGAGGGTTTAGGAGGGGAA+GGG | - | chr1_3:31787564-31787583 | Msa0114610:CDS | 50.0% | |
| GAAGAGGGTTTAGGAGAGGA+AGG | + | chr1_3:31787762-31787781 | None:intergenic | 50.0% | |
| TTGGGAAGAGGGTTTAGGAG+AGG | + | chr1_3:31787559-31787578 | None:intergenic | 50.0% | |
| ! | CTAAGGGTGTGTTTGGGAAG+AGG | + | chr1_3:31787778-31787797 | None:intergenic | 50.0% |
| GGGTCGGAATGGAACACTAA+GGG | + | chr1_3:31787794-31787813 | None:intergenic | 50.0% | |
| AGGGTCGGAATGGAACACTA+AGG | + | chr1_3:31787795-31787814 | None:intergenic | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | + | chr1_3:31787810-31787829 | None:intergenic | 50.0% | |
| CCGGTGGACCCTTAAAATGA+AGG | + | chr1_3:31787965-31787984 | None:intergenic | 50.0% | |
| ! | GGAGCCGGTTACCATTTTGT+TGG | - | chr1_3:31788008-31788027 | Msa0114610:intron | 50.0% |
| !! | GAAGGTGCTGGTTCTTGAGA+AGG | - | chr1_3:31788696-31788715 | Msa0114610:intron | 50.0% |
| GGGACCAGATTATCTCGTAC+AGG | - | chr1_3:31788717-31788736 | Msa0114610:intron | 50.0% | |
| GACCTTTATGGGTCTCCTAC+CGG | + | chr1_3:31789616-31789635 | None:intergenic | 50.0% | |
| GCTACGGTGCATGACCTTTA+TGG | + | chr1_3:31789628-31789647 | None:intergenic | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | + | chr1_3:31789893-31789912 | None:intergenic | 50.0% |
| TGGAAAAGCCGAAGCCGAAT+TGG | - | chr1_3:31789892-31789911 | Msa0114610:intron | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | + | chr1_3:31789903-31789922 | None:intergenic | 50.0% | |
| ! | CCAGTTCCATACCCTCCTTT+TGG | + | chr1_3:31789986-31790005 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | - | chr1_3:31789983-31790002 | Msa0114610:intron | 50.0% |
| TGATGTTAGCTCCCAGTTCC+TGG | + | chr1_3:31790251-31790270 | None:intergenic | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | - | chr1_3:31790254-31790273 | Msa0114610:CDS | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | - | chr1_3:31790270-31790289 | Msa0114610:CDS | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | + | chr1_3:31790274-31790293 | None:intergenic | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | - | chr1_3:31790390-31790409 | Msa0114610:CDS | 50.0% | |
| ACAACCACTTCCTCCAAACC+TGG | + | chr1_3:31790397-31790416 | None:intergenic | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | - | chr1_3:31790399-31790418 | Msa0114610:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | - | chr1_3:31790404-31790423 | Msa0114610:CDS | 50.0% | |
| CCGTGCAACATCAACACCAC+TGG | + | chr1_3:31787253-31787272 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | - | chr1_3:31787291-31787310 | Msa0114610:CDS | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | + | chr1_3:31787468-31787487 | None:intergenic | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | - | chr1_3:31787479-31787498 | Msa0114610:intron | 55.0% | |
| CTTGGGGTGTGTTTGGGAAG+AGG | - | chr1_3:31787547-31787566 | Msa0114610:CDS | 55.0% | |
| GAAGAGGGTTTAGGAGGGGA+AGG | - | chr1_3:31787563-31787582 | Msa0114610:CDS | 55.0% | |
| GGTTTAGGAGAGGAAGGGAG+GGG | + | chr1_3:31787756-31787775 | None:intergenic | 55.0% | |
| GGGTTTAGGAGAGGAAGGGA+GGG | + | chr1_3:31787757-31787776 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGAGGAAGGG+AGG | + | chr1_3:31787758-31787777 | None:intergenic | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | - | chr1_3:31787799-31787818 | Msa0114610:intron | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | + | chr1_3:31787805-31787824 | None:intergenic | 55.0% | |
| AAAGACGGGAGCCCCTAACA+TGG | - | chr1_3:31787938-31787957 | Msa0114610:intron | 55.0% | |
| GATCAGCTTGCGTGCTCACA+AGG | + | chr1_3:31788379-31788398 | None:intergenic | 55.0% | |
| TGTGAGCACGCAAGCTGATC+TGG | - | chr1_3:31788379-31788398 | Msa0114610:intron | 55.0% | |
| ATGCACGGGTACGAGACCTA+CGG | + | chr1_3:31788879-31788898 | None:intergenic | 55.0% | |
| CACCGGTAGGAGACCCATAA+AGG | - | chr1_3:31789611-31789630 | Msa0114610:intron | 55.0% | |
| AAAGCCGAAGCCGAATTGGC+TGG | - | chr1_3:31789896-31789915 | Msa0114610:intron | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | - | chr1_3:31789902-31789921 | Msa0114610:intron | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | - | chr1_3:31790403-31790422 | Msa0114610:CDS | 55.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | - | chr1_3:31787321-31787340 | Msa0114610:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | + | chr1_3:31787336-31787355 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | - | chr1_3:31787335-31787354 | Msa0114610:CDS | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | - | chr1_3:31787336-31787355 | Msa0114610:CDS | 60.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | + | chr1_3:31787347-31787366 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | + | chr1_3:31787348-31787367 | None:intergenic | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | + | chr1_3:31787349-31787368 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr1_3:31787567-31787586 | Msa0114610:CDS | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr1_3:31787568-31787587 | Msa0114610:CDS | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr1_3:31787569-31787588 | Msa0114610:CDS | 60.0% | |
| TAGGAGAGGAAGGGAGGGGA+GGG | + | chr1_3:31787752-31787771 | None:intergenic | 60.0% | |
| TTAGGAGAGGAAGGGAGGGG+AGG | + | chr1_3:31787753-31787772 | None:intergenic | 60.0% | |
| AGACCTACGGAGCTTGCGCA+CGG | + | chr1_3:31788866-31788885 | None:intergenic | 60.0% | |
| ! | AATAGGTGACCGGCTCCAGC+AGG | - | chr1_3:31789715-31789734 | Msa0114610:intron | 60.0% |
| GGCCACTGCACGGTAACCCT+TGG | + | chr1_3:31787326-31787345 | None:intergenic | 65.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | - | chr1_3:31787337-31787356 | Msa0114610:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | - | chr1_3:31787343-31787362 | Msa0114610:CDS | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr1_3:31787572-31787591 | Msa0114610:CDS | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr1_3:31787573-31787592 | Msa0114610:CDS | 65.0% | |
| GACCTACGGAGCTTGCGCAC+GGG | + | chr1_3:31788865-31788884 | None:intergenic | 65.0% | |
| CGGAGCTTGCGCACGGGAGA+CGG | + | chr1_3:31788859-31788878 | None:intergenic | 70.0% | |
| CTCCCGTGCGCAAGCTCCGT+AGG | - | chr1_3:31788860-31788879 | Msa0114610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 31787178 | 31790501 | 31787178 | ID=Msa0114610;Name=Msa0114610 |
| chr1_3 | mRNA | 31787178 | 31790501 | 31787178 | ID=Msa0114610-mRNA-1;Parent=Msa0114610;Name=Msa0114610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|307 |
| chr1_3 | exon | 31790179 | 31790501 | 31790179 | ID=Msa0114610-mRNA-1:exon:10358;Parent=Msa0114610-mRNA-1 |
| chr1_3 | exon | 31789782 | 31789881 | 31789782 | ID=Msa0114610-mRNA-1:exon:10357;Parent=Msa0114610-mRNA-1 |
| chr1_3 | exon | 31787542 | 31787792 | 31787542 | ID=Msa0114610-mRNA-1:exon:10356;Parent=Msa0114610-mRNA-1 |
| chr1_3 | exon | 31787178 | 31787427 | 31787178 | ID=Msa0114610-mRNA-1:exon:10355;Parent=Msa0114610-mRNA-1 |
| chr1_3 | CDS | 31790179 | 31790501 | 31790179 | ID=Msa0114610-mRNA-1:cds;Parent=Msa0114610-mRNA-1 |
| chr1_3 | CDS | 31789782 | 31789881 | 31789782 | ID=Msa0114610-mRNA-1:cds;Parent=Msa0114610-mRNA-1 |
| chr1_3 | CDS | 31787542 | 31787792 | 31787542 | ID=Msa0114610-mRNA-1:cds;Parent=Msa0114610-mRNA-1 |
| chr1_3 | CDS | 31787178 | 31787427 | 31787178 | ID=Msa0114610-mRNA-1:cds;Parent=Msa0114610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
