AlfalfaGEDB | Msa0102930

M. sativa cultivar zhongmu-4 / Msa0102930

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102930	XP_003589551.1	96.226	318	11	1	1	317	1	318	0.0	636

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102930	sp\|Q43872\|PER64_ARATH	72.990	311	82	1	7	317	9	317	2.42e-172	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102930	G7I8C1	96.226	318	11	1	1	317	1	318	0.0	636

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004580	Msa0102930	0.972517	6.784622e-135	-8.615850e-47
Msa0004590	Msa0102930	0.810548	1.091220e-50	-8.615850e-47
Msa0024280	Msa0102930	0.821778	3.369207e-53	-8.615850e-47
Msa0024290	Msa0102930	0.804019	2.641260e-49	-8.615850e-47
Msa0025700	Msa0102930	0.804774	1.837787e-49	-8.615850e-47
Msa0048950	Msa0102930	0.816235	6.140931e-52	-8.615850e-47
Msa0057870	Msa0102930	0.955602	2.079192e-113	-8.615850e-47
Msa0059880	Msa0102930	0.857549	1.513166e-62	-8.615850e-47
Msa0072030	Msa0102930	0.842892	1.958555e-58	-8.615850e-47
Msa0084160	Msa0102930	0.801326	9.490522e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102930	MtrunA17_Chr1g0157051	96.226	318	11	1	1	317	1	318	0.0	636
Msa0102930	MtrunA17_Chr8g0371381	73.913	299	77	1	18	316	21	318	7.47e-166	464
Msa0102930	MtrunA17_Chr5g0405991	69.620	316	95	1	1	316	1	315	7.07e-162	454
Msa0102930	MtrunA17_Chr1g0204011	54.516	310	139	2	9	316	12	321	7.67e-124	357
Msa0102930	MtrunA17_Chr1g0188431	49.320	294	137	4	23	313	39	323	1.86e-97	290
Msa0102930	MtrunA17_Chr6g0477071	46.284	296	147	4	21	313	52	338	6.35e-92	277
Msa0102930	MtrunA17_Chr2g0279041	44.479	317	163	4	7	313	8	321	1.98e-90	273
Msa0102930	MtrunA17_Chr7g0268501	45.215	303	159	4	18	316	20	319	1.44e-89	270
Msa0102930	MtrunA17_Chr7g0268521	45.215	303	159	4	18	316	20	319	1.44e-89	270
Msa0102930	MtrunA17_Chr3g0128061	43.671	316	172	4	7	316	10	325	6.89e-87	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102930	AT5G42180.1	72.990	311	82	1	7	317	9	317	2.46e-173	483
Msa0102930	AT5G51890.1	52.941	323	143	4	1	316	1	321	6.70e-123	355
Msa0102930	AT4G33420.1	46.326	313	155	4	5	313	18	321	5.06e-92	277
Msa0102930	AT4G33420.2	46.326	313	155	4	5	313	65	368	3.22e-91	276
Msa0102930	AT1G05260.1	44.340	318	169	6	5	315	7	323	2.45e-90	273
Msa0102930	AT3G21770.1	43.791	306	165	5	16	315	22	326	7.08e-87	264
Msa0102930	AT2G41480.1	44.753	324	157	6	7	316	12	327	1.25e-86	263
Msa0102930	AT5G64120.1	43.667	300	160	6	21	316	33	327	4.84e-86	262
Msa0102930	AT4G36430.1	44.295	298	150	6	27	313	34	326	4.06e-83	254
Msa0102930	AT4G11290.1	40.979	327	179	8	2	316	1	325	4.23e-83	254

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Find 77 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGTAGCATCACCAA+TGG	0.654023	1_3:+9825601	Msa0102930:CDS
AAAGGATGGTAGAATCTCAA+AGG	0.603107	1_3:+9825046	Msa0102930:CDS
AAGAATAAAGCAGAAAAGGA+TGG	0.545325	1_3:+9824483	Msa0102930:CDS
AAGCTCTTTCAAATTCCATT+TGG	0.303757	1_3:-9825561	None:intergenic
AATATATGAAGGGGTGTGAT+GGG	0.529898	1_3:+9824436	Msa0102930:intron
AATGCATGCAATGATATGTT+TGG	0.428472	1_3:-9824510	None:intergenic
AATTGGGAGATGTTGAAAGT+GGG	0.657381	1_3:-9825095	None:intergenic
ACGGGTCAACACCTTGTTTA+GGG	0.328269	1_3:-9825327	None:intergenic
AGAGAAGCTTTGTTGTAATT+GGG	0.360077	1_3:-9825111	None:intergenic
AGCTCTTTCAAATTCCATTT+GGG	0.368047	1_3:-9825560	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTTCTGTTGAAATCAAA+GGG	+	chr1_3:9824459-9824478	Msa0102930:CDS	30.0%
AAGAATAAAGCAGAAAAGGA+TGG	+	chr1_3:9824483-9824502	Msa0102930:CDS	30.0%
AATGCATGCAATGATATGTT+TGG	-	chr1_3:9824513-9824532	None:intergenic	30.0%
ACCTAACTACATGATTGATT+TGG	+	chr1_3:9824801-9824820	Msa0102930:intron	30.0%
TATAGTATTATACATGTCCG+AGG	-	chr1_3:9824852-9824871	None:intergenic	30.0%
CCCAATTCAAAATTAGTTAG+TGG	-	chr1_3:9824975-9824994	None:intergenic	30.0%
TAATATGACATTTGCTTTGG+AGG	-	chr1_3:9825378-9825397	None:intergenic	30.0%
AAAAACAAGGTGAAAAATGC+AGG	+	chr1_3:9825397-9825416	Msa0102930:CDS	30.0%
AAAACAAGGTGAAAAATGCA+GGG	+	chr1_3:9825398-9825417	Msa0102930:CDS	30.0%
AGCTCTTTCAAATTCCATTT+GGG	-	chr1_3:9825563-9825582	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	9824132	9825663	9824132	ID=Msa0102930;Name=Msa0102930
chr1_3	mRNA	9824132	9825663	9824132	ID=Msa0102930-mRNA-1;Parent=Msa0102930;Name=Msa0102930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|1\|1\|1\|4\|0\|317
chr1_3	exon	9824132	9824335	9824132	ID=Msa0102930-mRNA-1:exon:4032;Parent=Msa0102930-mRNA-1
chr1_3	exon	9824447	9824635	9824447	ID=Msa0102930-mRNA-1:exon:4033;Parent=Msa0102930-mRNA-1
chr1_3	exon	9825011	9825173	9825011	ID=Msa0102930-mRNA-1:exon:4034;Parent=Msa0102930-mRNA-1
chr1_3	exon	9825266	9825663	9825266	ID=Msa0102930-mRNA-1:exon:4035;Parent=Msa0102930-mRNA-1
chr1_3	CDS	9824132	9824335	9824132	ID=Msa0102930-mRNA-1:cds;Parent=Msa0102930-mRNA-1
chr1_3	CDS	9824447	9824635	9824447	ID=Msa0102930-mRNA-1:cds;Parent=Msa0102930-mRNA-1
chr1_3	CDS	9825011	9825173	9825011	ID=Msa0102930-mRNA-1:cds;Parent=Msa0102930-mRNA-1
chr1_3	CDS	9825266	9825663	9825266	ID=Msa0102930-mRNA-1:cds;Parent=Msa0102930-mRNA-1

Gene Sequence

>Msa0102930

ATGGTATCAACTATTGGCATGGTGGTGCTCATGATGATGGTGTCCTTAACTTCTCTAGCAAGTGCATTAAGTGTGAATTACTATGAGCATACATGTCCTCAGGTAGACTCCATCGTGGCTGGTGCAGTACACAAAGCAACCATGAATGACAAAACAGTTCCATCAGCTCTGCTTCGCATGCATTTTCATGATTGCTTCATAAGGGGGTGTGATGGGTCTGTTCTGTTGAAATCAAAGGGAAAGAATAAAGCAGAAAAGGATGGACCTCCAAACATATCATTGCATGCATTTTATGTAATTGAGAACGCTAAGAAAGCATTGGAAGCAGTTTGTCCAGGGGTCGTGTCTTGTGCTGATATTTTGGCTCTTGCTGCTAGGGATGCTGTCACTCTGTCTGGAGGGCCAAGTTGGGAAGTACCAAAAGGAAGAAAGGATGGTAGAATCTCAAAGGCTACTGAAACCAGACAATTGCCAGCTCCCACTTTCAACATCTCCCAATTACAACAAAGCTTCTCTCAAAGAGGACTTTCCTTGCAAGATTTGGTTGCTCTCTCAGGAGGTCACACCCTGGGGTTTGCACATTGTTCATCCTTCCAAAATAGAATCCATAAATTCAGCCCTAAACAAGGTGTTGACCCGTCCTTAAACCCATCATTTGCAAGCAACCTCCAAAGCAAATGTCATATTAAAAACAAGGTGAAAAATGCAGGGTCCCCATTGGACTCAACTGCCACATATTTTGACAATGCTTATTACAAACTACTACTTCAAGGAAAAAGCATACTCTCTTCTGATCAAGCTCTACTTACTCATCCAACCACTAAAGCATTGGTTTCCAAATATGCTCATTCCCAAATGGAATTTGAAAGAGCTTTTGTCAAATCCATGATCAAAATGAGTAGCATCACCAATGGTGGAAAAGAGATCAGGCTCCAATGTAATCTCGTTAGATGA

Protein sequence

>Msa0102930

MVSTIGMVVLMMMVSLTSLASALSVNYYEHTCPQVDSIVAGAVHKATMNDKTVPSALLRMHFHDCFIRGCDGSVLLKSKGKNKAEKDGPPNISLHAFYVIENAKKALEAVCPGVVSCADILALAARDAVTLSGGPSWEVPKGRKDGRISKATETRQLPAPTFNISQLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHKFSPKQGVDPSLNPSFASNLQSKCHIKNKVKNAGSPLDSTATYFDNAYYKLLLQGKSILSSDQALLTHPTTKALVSKYAHSQMEFERAFVKSMIKMSSITNGGKEIRLQCNLVR*