AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207470 MtrunA17_Chr4g0056331 98.400 125 2 0 1 125 1 125 4.65e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207470 AT5G47570.1 81.600 125 23 0 1 125 1 125 2.46e-63 189

Find 58 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTTATCTAATCTTTA+TGG 0.045452 8_1:+64915136 Msa1207470:three_prime_UTR
TTTCATCATTCTCATGCTTC+TGG 0.236372 8_1:+64915085 Msa1207470:three_prime_UTR
GAGAAACGAACGGGTTTGTT+AGG 0.253010 8_1:-64910428 None:intergenic
CAGGCCAAACGACTTCGTTT+TGG 0.306817 8_1:-64910190 None:intergenic
AGGTAGATCCAAGGCAATAA+TGG 0.331587 8_1:+64914830 Msa1207470:exon
TTCAAATCCCATTATTGCCT+TGG 0.378386 8_1:-64914838 None:intergenic
CTCCGCCTCCGCTCCGGCAT+GGG 0.379300 8_1:+64910380 Msa1207470:CDS
TTGTCATATGGATAAACTTT+GGG 0.382238 8_1:-64914778 None:intergenic
AGATAAATTGAGCAGAATAA+TGG 0.400505 8_1:-64915125 None:intergenic
ATTTCCAAAACGAAGTCGTT+TGG 0.401582 8_1:+64910186 Msa1207470:five_prime_UTR
TCTATACAAGGTTCAGGAAA+TGG 0.408392 8_1:-64910578 None:intergenic
ATGCGATCTATACAAGGTTC+AGG 0.410095 8_1:-64910584 None:intergenic
TATTGCCTTGGATCTACCTA+TGG 0.415342 8_1:-64914826 None:intergenic
GAAGCATTGGCGTGGCTTTG+TGG 0.425668 8_1:+64910734 Msa1207470:CDS
AGAAACGAACGGGTTTGTTA+GGG 0.426104 8_1:-64910427 None:intergenic
GGCTCTTCGATTCCTGTACT+AGG 0.431157 8_1:-64915042 None:intergenic
CCTCCGCCTCCGCTCCGGCA+TGG 0.434356 8_1:+64910379 Msa1207470:CDS
GGTAGATCCAAGGCAATAAT+GGG 0.446872 8_1:+64914831 Msa1207470:exon
CCATGCCGGAGCGGAGGCGG+AGG 0.448743 8_1:-64910379 None:intergenic
ACAAATGAACGGAATAGAAC+AGG 0.454026 8_1:-64914873 None:intergenic
TTAACTTACAAATGGTGTCT+TGG 0.464926 8_1:-64910813 None:intergenic
ATTGTCATATGGATAAACTT+TGG 0.466688 8_1:-64914779 None:intergenic
AGGAATCGAAGAGCCGAATC+TGG 0.473800 8_1:+64915050 Msa1207470:three_prime_UTR
ATTTCTCTACGCAGAATGCT+TGG 0.473875 8_1:+64915355 Msa1207470:three_prime_UTR
CATGTTAGTTCTTCATTCAC+CGG 0.487264 8_1:-64910542 None:intergenic
GATCGCATTGCTGATACTGT+TGG 0.491226 8_1:+64910599 Msa1207470:CDS
CATCATTCTCATGCTTCTGG+TGG 0.499841 8_1:+64915088 Msa1207470:three_prime_UTR
TTTCTAGCAATCATATTTGG+TGG 0.500363 8_1:-64915225 None:intergenic
ATCGAAGCAATAACCATGGC+AGG 0.504944 8_1:+64910287 Msa1207470:exon
TCATCCCTCCGCCTCCGCTC+CGG 0.507694 8_1:+64910374 Msa1207470:CDS
TCCGACAGGGAGACCCATGC+CGG 0.522170 8_1:-64910393 None:intergenic
TGTTACTGCAATGCAATCAC+AGG 0.524800 8_1:-64910209 None:intergenic
TTGAAATTAGTATGAAGCAT+TGG 0.528117 8_1:+64910721 Msa1207470:intron
CGGTGAATGAAGAACTAACA+TGG 0.534935 8_1:+64910543 Msa1207470:CDS
TCCACTCGCAGATTGTCATA+TGG 0.536750 8_1:-64914790 None:intergenic
GGAGCTTGGTGGTGAACCAT+AGG 0.538851 8_1:+64914810 Msa1207470:CDS
TTCTGGTGGCTATAGTCAGT+TGG 0.542956 8_1:+64915102 Msa1207470:three_prime_UTR
GACAATCTGCGAGTGGAGCT+TGG 0.545668 8_1:+64914796 Msa1207470:CDS
TCCGGCATGGGTCTCCCTGT+CGG 0.546369 8_1:+64910392 Msa1207470:CDS
ATCTAATCTTTATGGAACTG+AGG 0.551442 8_1:+64915144 Msa1207470:three_prime_UTR
GTTTGTTAATCTACCTGCCA+TGG 0.570431 8_1:-64910300 None:intergenic
CATTGCTGATACTGTTGGAA+AGG 0.586857 8_1:+64910604 Msa1207470:CDS
AACGTAGCATCACAAATCTT+AGG 0.588126 8_1:+64910320 Msa1207470:CDS
CAGGGAGACCCATGCCGGAG+CGG 0.594551 8_1:-64910388 None:intergenic
GACTTGCTGAAACCTAGTAC+AGG 0.598283 8_1:+64915030 Msa1207470:three_prime_UTR
TCAGCAATGCGATCTATACA+AGG 0.598418 8_1:-64910590 None:intergenic
GTTTGGGATTATTGGCTGTG+TGG 0.604221 8_1:+64910777 Msa1207470:CDS
CATGCCGGAGCGGAGGCGGA+GGG 0.607377 8_1:-64910378 None:intergenic
GAAGAACTAACATGGGACAA+TGG 0.633770 8_1:+64910551 Msa1207470:CDS
GCATTGGCGTGGCTTTGTGG+AGG 0.638427 8_1:+64910737 Msa1207470:CDS
GTGAACCATAGGTAGATCCA+AGG 0.643233 8_1:+64914821 Msa1207470:exon
TCCATATGACAATCTGCGAG+TGG 0.653196 8_1:+64914789 Msa1207470:CDS
GGAGGGATGACGCTACAGAT+CGG 0.657559 8_1:-64910361 None:intergenic
ATTAGTATGAAGCATTGGCG+TGG 0.663186 8_1:+64910726 Msa1207470:intron
AATCTGCGAGTGGAGCTTGG+TGG 0.674769 8_1:+64914799 Msa1207470:CDS
AAGAATCGAAGCAATAACCA+TGG 0.678306 8_1:+64910283 Msa1207470:exon
GGTGAATGAAGAACTAACAT+GGG 0.683523 8_1:+64910544 Msa1207470:CDS
GTAGCATCACAAATCTTAGG+CGG 0.694755 8_1:+64910323 Msa1207470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTCTATTTTACTT+AGG - chr8_1:64911044-64911063 None:intergenic 10.0%
!!! AAATTGTCTTTTTTTTTTTT+AGG + chr8_1:64913041-64913060 Msa1207470:intron 10.0%
!!! AATTTTTATAAATGTTTTCT+AGG + chr8_1:64913686-64913705 Msa1207470:intron 10.0%
!!! ATTTTTATAAATGTTTTCTA+GGG + chr8_1:64913687-64913706 Msa1207470:intron 10.0%
!!! ATTTTTTGATTAATTACTTA+TGG - chr8_1:64914324-64914343 None:intergenic 10.0%
!! ATTAATCAAAAAATTTAACA+TGG + chr8_1:64914330-64914349 Msa1207470:intron 10.0%
!! AATTGAAATGAAAATTGAAT+AGG - chr8_1:64910463-64910482 None:intergenic 15.0%
!!! TTCATTAATAAAACTTTTTG+AGG - chr8_1:64910977-64910996 None:intergenic 15.0%
!!! TTAAATTCAGTGTTATTAAA+TGG - chr8_1:64911356-64911375 None:intergenic 15.0%
!! TATCAATAAAGTGTAAAATA+AGG + chr8_1:64911647-64911666 Msa1207470:intron 15.0%
!!! TTTTTAATTTGTTCACTATT+TGG + chr8_1:64911884-64911903 Msa1207470:intron 15.0%
!! AGAATAAATAAATATGCAAA+TGG - chr8_1:64912405-64912424 None:intergenic 15.0%
!! ATTTATTTATTCTAAGTAGT+AGG + chr8_1:64912412-64912431 Msa1207470:intron 15.0%
!! AAATTCTATTATTGATGTTT+AGG + chr8_1:64912984-64913003 Msa1207470:intron 15.0%
!!! TTTTTAGGATAATTATGTTA+AGG + chr8_1:64913056-64913075 Msa1207470:intron 15.0%
!! TTATTCTATGTTTATGTATT+TGG + chr8_1:64913742-64913761 Msa1207470:intron 15.0%
!! TATTCTATGTTTATGTATTT+GGG + chr8_1:64913743-64913762 Msa1207470:intron 15.0%
!! TAGATATAATAATCATACAT+GGG - chr8_1:64914268-64914287 None:intergenic 15.0%
!! TTAGATATAATAATCATACA+TGG - chr8_1:64914269-64914288 None:intergenic 15.0%
!! GTATGATTATTATATCTAAA+AGG + chr8_1:64914270-64914289 Msa1207470:intron 15.0%
!!! ATAATGTTTGCTTTTATATA+TGG + chr8_1:64914373-64914392 Msa1207470:intron 15.0%
!!! TTTTAAGTGTATATTGTTTA+TGG + chr8_1:64914539-64914558 Msa1207470:intron 15.0%
!!! TTTTTATATTATTTTGTGTC+AGG + chr8_1:64914753-64914772 Msa1207470:intron 15.0%
!! AAACAGAAATTGAAAAAAGA+AGG + chr8_1:64910251-64910270 Msa1207470:five_prime_UTR 20.0%
!! AATGAAAATTGAATAGGATA+GGG - chr8_1:64910457-64910476 None:intergenic 20.0%
!! AAATGAAAATTGAATAGGAT+AGG - chr8_1:64910458-64910477 None:intergenic 20.0%
!! AATTTAAATCCATATGGATA+TGG - chr8_1:64910643-64910662 None:intergenic 20.0%
!! ATCCATATGGATTTAAATTT+AGG + chr8_1:64910644-64910663 Msa1207470:intron 20.0%
!! ATCCTAAATTTAAATCCATA+TGG - chr8_1:64910649-64910668 None:intergenic 20.0%
!! ATATTCTATTTAGATCCTAT+GGG + chr8_1:64910889-64910908 Msa1207470:intron 20.0%
!! TATAAAAGTTATCAAAGTCA+TGG + chr8_1:64911075-64911094 Msa1207470:intron 20.0%
!! ATAAAGTGTAAAATAAGGAT+TGG + chr8_1:64911652-64911671 Msa1207470:intron 20.0%
!!! ATTTGTTACTTGATTATTCA+GGG - chr8_1:64912069-64912088 None:intergenic 20.0%
!!! AATTTGTTACTTGATTATTC+AGG - chr8_1:64912070-64912089 None:intergenic 20.0%
!! ACTAATCCTAAAATAAAACA+TGG + chr8_1:64912139-64912158 Msa1207470:intron 20.0%
!!! TATAATTTTGTCTCTTTGAT+GGG + chr8_1:64913099-64913118 Msa1207470:intron 20.0%
!!! AATATATTTTTACAATTCCC+AGG - chr8_1:64913337-64913356 None:intergenic 20.0%
!! TATTATAGTTGAAACTTGAA+GGG + chr8_1:64913432-64913451 Msa1207470:intron 20.0%
!! AGCATTAATTGCAAAATATT+TGG - chr8_1:64914727-64914746 None:intergenic 20.0%
!!! NNNNCAAAAGTACAAATGAA+CGG - chr8_1:64914887-64914906 None:intergenic 20.0%
!! AAAAAGAAATAAACCAGATT+CGG - chr8_1:64915066-64915085 None:intergenic 20.0%
!! CTCAATTTATCTAATCTTTA+TGG + chr8_1:64915136-64915155 Msa1207470:three_prime_UTR 20.0%
!!! ATTTTTCTAGCAATCATATT+TGG - chr8_1:64915231-64915250 None:intergenic 20.0%
! TTGAAATTAGTATGAAGCAT+TGG + chr8_1:64910721-64910740 Msa1207470:intron 25.0%
! CATATTCTATTTAGATCCTA+TGG + chr8_1:64910888-64910907 Msa1207470:intron 25.0%
!!! TTCCTTTTACTTTTGGTATA+TGG - chr8_1:64911117-64911136 None:intergenic 25.0%
!! CATCATTTTCCTTTTACTTT+TGG - chr8_1:64911124-64911143 None:intergenic 25.0%
! CAAAAGTAAAAGGAAAATGA+TGG + chr8_1:64911122-64911141 Msa1207470:intron 25.0%
!! AAATGATGGAGTTAAAAAAG+AGG + chr8_1:64911136-64911155 Msa1207470:intron 25.0%
!! AATGATGGAGTTAAAAAAGA+GGG + chr8_1:64911137-64911156 Msa1207470:intron 25.0%
!! AATTCAGTGTTATTAAATGG+CGG - chr8_1:64911353-64911372 None:intergenic 25.0%
!!! TTAATTTGTTCACTATTTGG+TGG + chr8_1:64911887-64911906 Msa1207470:intron 25.0%
!! TTTGTTACTTGATTATTCAG+GGG - chr8_1:64912068-64912087 None:intergenic 25.0%
!!! GTTTTATTTTAGGATTAGTC+AGG - chr8_1:64912138-64912157 None:intergenic 25.0%
!!! CTTGTTCCATGTTTTATTTT+AGG - chr8_1:64912148-64912167 None:intergenic 25.0%
! AAACAGCAGACATATAAAAT+AGG + chr8_1:64912256-64912275 Msa1207470:intron 25.0%
! ATCTTAATTCTTAACGTAGA+AGG + chr8_1:64912281-64912300 Msa1207470:intron 25.0%
!!! ACTGAACATACACTTTTTTT+GGG + chr8_1:64912851-64912870 Msa1207470:intron 25.0%
!!! TTTTTTATTAATTCCCACCA+CGG - chr8_1:64912964-64912983 None:intergenic 25.0%
!! CTATAATTTTGTCTCTTTGA+TGG + chr8_1:64913098-64913117 Msa1207470:intron 25.0%
! CATTAATACATTTCTTACCT+GGG - chr8_1:64913221-64913240 None:intergenic 25.0%
! CTATTATAGTTGAAACTTGA+AGG + chr8_1:64913431-64913450 Msa1207470:intron 25.0%
!! TTTATTCTGATAGGTTTTCT+GGG + chr8_1:64913455-64913474 Msa1207470:intron 25.0%
!! TATGTTTATGTATTTGGGTT+TGG + chr8_1:64913748-64913767 Msa1207470:intron 25.0%
!! AGTAACTAAGAAATTTTGTC+AGG - chr8_1:64913875-64913894 None:intergenic 25.0%
!!! CAGGTTTGGTAAATTATTTT+TGG - chr8_1:64913997-64914016 None:intergenic 25.0%
! GTCGATAATATTTAAATGCA+AGG - chr8_1:64914091-64914110 None:intergenic 25.0%
! TTGTCATATGGATAAACTTT+GGG - chr8_1:64914781-64914800 None:intergenic 25.0%
! ATTGTCATATGGATAAACTT+TGG - chr8_1:64914782-64914801 None:intergenic 25.0%
! AGATAAATTGAGCAGAATAA+TGG - chr8_1:64915128-64915147 None:intergenic 25.0%
!! TGAAAAGTTCTTTTAATGCT+TGG + chr8_1:64915302-64915321 Msa1207470:three_prime_UTR 25.0%
!! GAAAAGTTCTTTTAATGCTT+GGG + chr8_1:64915303-64915322 Msa1207470:three_prime_UTR 25.0%
! TAACCTCAATTTTCGAATTC+TGG + chr8_1:64910502-64910521 Msa1207470:intron 30.0%
! TACTTTTCACCATATCCATA+TGG + chr8_1:64910631-64910650 Msa1207470:intron 30.0%
TTAACTTACAAATGGTGTCT+TGG - chr8_1:64910816-64910835 None:intergenic 30.0%
AGAGCAAGTTAACTTACAAA+TGG - chr8_1:64910824-64910843 None:intergenic 30.0%
TATGACAACACACAACAAAA+TGG - chr8_1:64910872-64910891 None:intergenic 30.0%
TTGTTATCATTCTCTGATAG+TGG + chr8_1:64910931-64910950 Msa1207470:intron 30.0%
TGCCATATACCAAAAGTAAA+AGG + chr8_1:64911112-64911131 Msa1207470:intron 30.0%
TCCATAAGCAAATATGTGAA+GGG - chr8_1:64911288-64911307 None:intergenic 30.0%
!! TATTGGTTGGTTTGAAACAA+AGG + chr8_1:64911527-64911546 Msa1207470:intron 30.0%
TATGATTGAGTGAATGTTTC+TGG + chr8_1:64911607-64911626 Msa1207470:intron 30.0%
! TATTGATATCCCTCGATTTT+AGG - chr8_1:64911635-64911654 None:intergenic 30.0%
ATTGGAAAACTCAGATAGTA+GGG + chr8_1:64911670-64911689 Msa1207470:intron 30.0%
!! TAGAATGGATTGAGGAATAA+GGG + chr8_1:64911955-64911974 Msa1207470:intron 30.0%
AAAATCAAATGCATCTCTCA+AGG + chr8_1:64912195-64912214 Msa1207470:intron 30.0%
TACAAACTCTTGTGTATGAT+AGG - chr8_1:64912317-64912336 None:intergenic 30.0%
TAAGAATAAGAGTTTCAAGC+TGG + chr8_1:64912335-64912354 Msa1207470:intron 30.0%
AAGAATAAGAGTTTCAAGCT+GGG + chr8_1:64912336-64912355 Msa1207470:intron 30.0%
TTAACAACCAATGGTTGAAA+TGG - chr8_1:64912545-64912564 None:intergenic 30.0%
!!! CACTGAACATACACTTTTTT+TGG + chr8_1:64912850-64912869 Msa1207470:intron 30.0%
TGAGTAATTACTTCCCAATT+TGG + chr8_1:64912891-64912910 Msa1207470:intron 30.0%
GAGTAATTACTTCCCAATTT+GGG + chr8_1:64912892-64912911 Msa1207470:intron 30.0%
! ATAAAAAGAGTGTAGGTTGT+AGG - chr8_1:64913135-64913154 None:intergenic 30.0%
! TTTGGGTATAAAAAGAGTGT+AGG - chr8_1:64913142-64913161 None:intergenic 30.0%
ATGGTTGTCAAACTTCATTT+GGG - chr8_1:64913159-64913178 None:intergenic 30.0%
!! CACATTGTTATTTGGAATCA+TGG - chr8_1:64913178-64913197 None:intergenic 30.0%
! TTAAGGGACACATTGTTATT+TGG - chr8_1:64913186-64913205 None:intergenic 30.0%
GCATTAATACATTTCTTACC+TGG - chr8_1:64913222-64913241 None:intergenic 30.0%
CAAAACAAAATATCTGCCTT+TGG - chr8_1:64913397-64913416 None:intergenic 30.0%
!!! AGGCAGATATTTTGTTTTGT+CGG + chr8_1:64913398-64913417 Msa1207470:intron 30.0%
! GTTTATTCTGATAGGTTTTC+TGG + chr8_1:64913454-64913473 Msa1207470:intron 30.0%
!!! AATGCAAAACTTGTTTTGCA+GGG - chr8_1:64913540-64913559 None:intergenic 30.0%
! TGCAAAACAAGTTTTGCATT+GGG + chr8_1:64913540-64913559 Msa1207470:intron 30.0%
AACTACATCATAATTGCCAT+CGG + chr8_1:64913616-64913635 Msa1207470:intron 30.0%
TTCATAATTCGATAGCCATA+TGG - chr8_1:64913719-64913738 None:intergenic 30.0%
! TTATGTATTTGGGTTTGGTT+AGG + chr8_1:64913753-64913772 Msa1207470:intron 30.0%
AAAGAAAATAAACCTGTCAC+AGG + chr8_1:64913807-64913826 Msa1207470:intron 30.0%
! AGAAATTTTGTCAGGTTTTG+TGG - chr8_1:64913867-64913886 None:intergenic 30.0%
ATAATTTACCAAACCTGAAC+TGG + chr8_1:64914000-64914019 Msa1207470:intron 30.0%
TATTATCGACAACTACCATA+TGG + chr8_1:64914101-64914120 Msa1207470:intron 30.0%
GACATCTAAATTTATGTTGC+AGG - chr8_1:64914225-64914244 None:intergenic 30.0%
TATCTAAAAGGTTTGATGCT+TGG + chr8_1:64914282-64914301 Msa1207470:intron 30.0%
AATTTAACATGGACATGTGT+TGG + chr8_1:64914341-64914360 Msa1207470:intron 30.0%
! TGCTTTTATATATGGTGTGT+TGG + chr8_1:64914381-64914400 Msa1207470:intron 30.0%
AGAATGAACAACAATTACTG+AGG - chr8_1:64914423-64914442 None:intergenic 30.0%
! CAGTAATTGTTGTTCATTCT+TGG + chr8_1:64914423-64914442 Msa1207470:intron 30.0%
TATCTGAAGGTAAAGATTTG+CGG - chr8_1:64914473-64914492 None:intergenic 30.0%
GTATAAGCATGAGTTCAATT+GGG - chr8_1:64914625-64914644 None:intergenic 30.0%
AGTATAAGCATGAGTTCAAT+TGG - chr8_1:64914626-64914645 None:intergenic 30.0%
GTAAAGCTTCAAAACATGAA+GGG - chr8_1:64914687-64914706 None:intergenic 30.0%
TGTAAAGCTTCAAAACATGA+AGG - chr8_1:64914688-64914707 None:intergenic 30.0%
ATCTAATCTTTATGGAACTG+AGG + chr8_1:64915144-64915163 Msa1207470:three_prime_UTR 30.0%
!! ATCATATTTGGTGGTTTTTC+TGG - chr8_1:64915219-64915238 None:intergenic 30.0%
! TTTCTAGCAATCATATTTGG+TGG - chr8_1:64915228-64915247 None:intergenic 30.0%
ATTTCCAAAACGAAGTCGTT+TGG + chr8_1:64910186-64910205 Msa1207470:five_prime_UTR 35.0%
AAGAATCGAAGCAATAACCA+TGG + chr8_1:64910283-64910302 Msa1207470:exon 35.0%
AACGTAGCATCACAAATCTT+AGG + chr8_1:64910320-64910339 Msa1207470:CDS 35.0%
TGACCAGAATTCGAAAATTG+AGG - chr8_1:64910508-64910527 None:intergenic 35.0%
! CATGTTAGTTCTTCATTCAC+CGG - chr8_1:64910545-64910564 None:intergenic 35.0%
GGTGAATGAAGAACTAACAT+GGG + chr8_1:64910544-64910563 Msa1207470:CDS 35.0%
TCTATACAAGGTTCAGGAAA+TGG - chr8_1:64910581-64910600 None:intergenic 35.0%
!!! CTCTCTCGATTTTTTGGATT+TGG + chr8_1:64910844-64910863 Msa1207470:intron 35.0%
TTATCAAAGTCATGGCCTAA+AGG + chr8_1:64911083-64911102 Msa1207470:intron 35.0%
TATATGGCAATTGTGCCTTT+AGG - chr8_1:64911101-64911120 None:intergenic 35.0%
CCATAAGCAAATATGTGAAG+GGG - chr8_1:64911287-64911306 None:intergenic 35.0%
CTCCATAAGCAAATATGTGA+AGG - chr8_1:64911289-64911308 None:intergenic 35.0%
CTTCACATATTTGCTTATGG+AGG + chr8_1:64911287-64911306 Msa1207470:intron 35.0%
AGTAGTGTTCCACAAGTAAT+AGG + chr8_1:64911419-64911438 Msa1207470:intron 35.0%
AATGAATGAACAGAGACCTT+TGG + chr8_1:64911459-64911478 Msa1207470:intron 35.0%
ATGAGTAGTTGGTTATTGGT+TGG + chr8_1:64911514-64911533 Msa1207470:intron 35.0%
ACAAAGGATGAGTGAATGAT+TGG + chr8_1:64911565-64911584 Msa1207470:intron 35.0%
CAAAGGATGAGTGAATGATT+GGG + chr8_1:64911566-64911585 Msa1207470:intron 35.0%
GATTGGAAAACTCAGATAGT+AGG + chr8_1:64911669-64911688 Msa1207470:intron 35.0%
TTGGAAAACTCAGATAGTAG+GGG + chr8_1:64911671-64911690 Msa1207470:intron 35.0%
! CGAGATAACAGACTAGTTAA+TGG - chr8_1:64911812-64911831 None:intergenic 35.0%
! TAACTAGTCTGTTATCTCGT+AGG + chr8_1:64911813-64911832 Msa1207470:intron 35.0%
!! ATGATTGTTGTTTCGAGTGA+GGG + chr8_1:64911926-64911945 Msa1207470:intron 35.0%
!! GTAGAATGGATTGAGGAATA+AGG + chr8_1:64911954-64911973 Msa1207470:intron 35.0%
GAAAGCGAGCTATTAAGATA+AGG + chr8_1:64912002-64912021 Msa1207470:intron 35.0%
! CTCAAGGTTTTCAAATTCCT+AGG + chr8_1:64912211-64912230 Msa1207470:intron 35.0%
! CAAATTCCTAGGTTTTACCT+AGG + chr8_1:64912222-64912241 Msa1207470:intron 35.0%
AGAATAAGAGTTTCAAGCTG+GGG + chr8_1:64912337-64912356 Msa1207470:intron 35.0%
AAGTTCTACAGCATACAATC+AGG - chr8_1:64912478-64912497 None:intergenic 35.0%
TCAACTACCATTTCAACCAT+TGG + chr8_1:64912535-64912554 Msa1207470:intron 35.0%
ATCACAGTCTTAACAACCAA+TGG - chr8_1:64912554-64912573 None:intergenic 35.0%
! AATTTTTATGCCGTTCCCAA+TGG - chr8_1:64912618-64912637 None:intergenic 35.0%
AACGGCATAAAAATTGTGAG+AGG + chr8_1:64912623-64912642 Msa1207470:intron 35.0%
TGTAAATGTGCATGTTGTTG+CGG - chr8_1:64912770-64912789 None:intergenic 35.0%
!!! ACACTTTTTTTGGGACAATG+TGG + chr8_1:64912860-64912879 Msa1207470:intron 35.0%
!!! CACTTTTTTTGGGACAATGT+GGG + chr8_1:64912861-64912880 Msa1207470:intron 35.0%
AGATGAGAAGTTCCCAAATT+GGG - chr8_1:64912907-64912926 None:intergenic 35.0%
TAGATGAGAAGTTCCCAAAT+TGG - chr8_1:64912908-64912927 None:intergenic 35.0%
CATGGTTGTCAAACTTCATT+TGG - chr8_1:64913160-64913179 None:intergenic 35.0%
CTTGAAGGGTTTATTCTGAT+AGG + chr8_1:64913446-64913465 Msa1207470:intron 35.0%
!!! CAATGCAAAACTTGTTTTGC+AGG - chr8_1:64913541-64913560 None:intergenic 35.0%
! CTGCAAAACAAGTTTTGCAT+TGG + chr8_1:64913539-64913558 Msa1207470:intron 35.0%
! ACAAGTTTTGCATTGGGATA+AGG + chr8_1:64913546-64913565 Msa1207470:intron 35.0%
CACATCTTCAATGTGAAGTA+CGG - chr8_1:64913644-64913663 None:intergenic 35.0%
CTTCACATTGAAGATGTGAT+TGG + chr8_1:64913646-64913665 Msa1207470:intron 35.0%
! TTTCTAGGGAATAAGCCATA+TGG + chr8_1:64913701-64913720 Msa1207470:intron 35.0%
!! AGCATTGACTTTAAGAGTCA+GGG + chr8_1:64913831-64913850 Msa1207470:intron 35.0%
!! TTGTCAGGTTTTGTGGATTT+CGG - chr8_1:64913860-64913879 None:intergenic 35.0%
!!! AATTATTTTTGGCAGCCTGA+AGG - chr8_1:64913986-64914005 None:intergenic 35.0%
TTGCAATGAACACTACCATA+TGG - chr8_1:64914119-64914138 None:intergenic 35.0%
TGTTCAATTCAGTAACAAGC+TGG + chr8_1:64914142-64914161 Msa1207470:intron 35.0%
! TATATGGTGTGTTGGCAATT+TGG + chr8_1:64914389-64914408 Msa1207470:intron 35.0%
ACTAGACTAGGATTATCTGA+AGG - chr8_1:64914486-64914505 None:intergenic 35.0%
! AGATAATCCTAGTCTAGTTC+TGG + chr8_1:64914488-64914507 Msa1207470:intron 35.0%
CAACCATTGTATGGCAATAT+CGG + chr8_1:64914516-64914535 Msa1207470:intron 35.0%
AAACCGATATTGCCATACAA+TGG - chr8_1:64914522-64914541 None:intergenic 35.0%
ATGAGTTCAATTGGGAATCA+TGG - chr8_1:64914617-64914636 None:intergenic 35.0%
TTCAAATCCCATTATTGCCT+TGG - chr8_1:64914841-64914860 None:intergenic 35.0%
ACAAATGAACGGAATAGAAC+AGG - chr8_1:64914876-64914895 None:intergenic 35.0%
TTTCATCATTCTCATGCTTC+TGG + chr8_1:64915085-64915104 Msa1207470:three_prime_UTR 35.0%
TGTTACTGCAATGCAATCAC+AGG - chr8_1:64910212-64910231 None:intergenic 40.0%
! GTTTGTTAATCTACCTGCCA+TGG - chr8_1:64910303-64910322 None:intergenic 40.0%
GTAGCATCACAAATCTTAGG+CGG + chr8_1:64910323-64910342 Msa1207470:CDS 40.0%
!! AGAAACGAACGGGTTTGTTA+GGG - chr8_1:64910430-64910449 None:intergenic 40.0%
ATAGGGTAAGAGAAACGAAC+GGG - chr8_1:64910440-64910459 None:intergenic 40.0%
GATAGGGTAAGAGAAACGAA+CGG - chr8_1:64910441-64910460 None:intergenic 40.0%
!!! GGTCATGTTTTTTCAGCTTC+CGG + chr8_1:64910523-64910542 Msa1207470:intron 40.0%
CGGTGAATGAAGAACTAACA+TGG + chr8_1:64910543-64910562 Msa1207470:CDS 40.0%
GAAGAACTAACATGGGACAA+TGG + chr8_1:64910551-64910570 Msa1207470:CDS 40.0%
ATGCGATCTATACAAGGTTC+AGG - chr8_1:64910587-64910606 None:intergenic 40.0%
TCAGCAATGCGATCTATACA+AGG - chr8_1:64910593-64910612 None:intergenic 40.0%
CATTGCTGATACTGTTGGAA+AGG + chr8_1:64910604-64910623 Msa1207470:CDS 40.0%
!! ATTAGTATGAAGCATTGGCG+TGG + chr8_1:64910726-64910745 Msa1207470:intron 40.0%
!! TTTTGCGGGTTTGGGATTAT+TGG + chr8_1:64910769-64910788 Msa1207470:CDS 40.0%
!!! TGCTCTCTCTCTCGATTTTT+TGG + chr8_1:64910838-64910857 Msa1207470:intron 40.0%
!! TCATTCTCTGATAGTGGCAT+TGG + chr8_1:64910937-64910956 Msa1207470:intron 40.0%
!! CATTCTGGCGTTGACAATAT+TGG - chr8_1:64911207-64911226 None:intergenic 40.0%
! ATGGCAGGTTTTTGACATTC+TGG - chr8_1:64911222-64911241 None:intergenic 40.0%
CAATAGCATGCTTATATGGC+AGG - chr8_1:64911237-64911256 None:intergenic 40.0%
GCCATATAAGCATGCTATTG+CGG + chr8_1:64911237-64911256 Msa1207470:intron 40.0%
CCCCTTCACATATTTGCTTA+TGG + chr8_1:64911284-64911303 Msa1207470:intron 40.0%
TTAACAGAGACATGTGTGAG+TGG + chr8_1:64911372-64911391 Msa1207470:intron 40.0%
ATGTGTGAGTGGAGGTTTAT+GGG + chr8_1:64911383-64911402 Msa1207470:intron 40.0%
TTCAGCACACCTATTACTTG+TGG - chr8_1:64911431-64911450 None:intergenic 40.0%
AGTAATAGGTGTGCTGAAAC+AGG + chr8_1:64911433-64911452 Msa1207470:intron 40.0%
GTAATAGGTGTGCTGAAACA+GGG + chr8_1:64911434-64911453 Msa1207470:intron 40.0%
TAATAGGTGTGCTGAAACAG+GGG + chr8_1:64911435-64911454 Msa1207470:intron 40.0%
GCTGATGAGTAGTTGGTTAT+TGG + chr8_1:64911510-64911529 Msa1207470:intron 40.0%
! TTTCTGGTGCCTAAAATCGA+GGG + chr8_1:64911623-64911642 Msa1207470:intron 40.0%
!! AGCACTATAGTGGATTCCAT+GGG + chr8_1:64911784-64911803 Msa1207470:intron 40.0%
TAGTCTGTTATCTCGTAGGT+GGG + chr8_1:64911817-64911836 Msa1207470:intron 40.0%
!! CATGATTGTTGTTTCGAGTG+AGG + chr8_1:64911925-64911944 Msa1207470:intron 40.0%
!! GGAAAAGGTAGAATGGATTG+AGG + chr8_1:64911947-64911966 Msa1207470:intron 40.0%
TGGATTGAGGAATAAGGGTT+TGG + chr8_1:64911960-64911979 Msa1207470:intron 40.0%
GGATTGAGGAATAAGGGTTT+GGG + chr8_1:64911961-64911980 Msa1207470:intron 40.0%
GATTGAGGAATAAGGGTTTG+GGG + chr8_1:64911962-64911981 Msa1207470:intron 40.0%
ATTGAGGAATAAGGGTTTGG+GGG + chr8_1:64911963-64911982 Msa1207470:intron 40.0%
GCATAAAAATTGTGAGAGGC+CGG + chr8_1:64912627-64912646 Msa1207470:intron 40.0%
GTAAATGTGCATGTTGTTGC+GGG - chr8_1:64912769-64912788 None:intergenic 40.0%
CAACATGCACATTTACAACC+CGG + chr8_1:64912773-64912792 Msa1207470:intron 40.0%
AATCAAAAACGTGTGGAACC+GGG - chr8_1:64912794-64912813 None:intergenic 40.0%
GAATCAAAAACGTGTGGAAC+CGG - chr8_1:64912795-64912814 None:intergenic 40.0%
!! GGTTCCACACGTTTTTGATT+CGG + chr8_1:64912794-64912813 Msa1207470:intron 40.0%
ACTTCCGAATCAAAAACGTG+TGG - chr8_1:64912801-64912820 None:intergenic 40.0%
!!! TTTTGATTCGGAAGTTGACC+CGG + chr8_1:64912806-64912825 Msa1207470:intron 40.0%
TCTTTGCAGATATCATTCCG+TGG + chr8_1:64912944-64912963 Msa1207470:intron 40.0%
AATACATTTCTTACCTGGGC+TGG - chr8_1:64913217-64913236 None:intergenic 40.0%
! TTGCAATTCTCTGGCTTACA+GGG - chr8_1:64913264-64913283 None:intergenic 40.0%
! AGATTGTAGAGCTGCTACTT+AGG - chr8_1:64913305-64913324 None:intergenic 40.0%
TAAGTAGCAGCTCTACAATC+TGG + chr8_1:64913304-64913323 Msa1207470:intron 40.0%
TACAATCTGGACATTGACCT+GGG + chr8_1:64913317-64913336 Msa1207470:intron 40.0%
TTGCAATACGTAGCAACCAA+AGG + chr8_1:64913378-64913397 Msa1207470:intron 40.0%
GGGATAAGGATCATTCAAGA+TGG + chr8_1:64913560-64913579 Msa1207470:intron 40.0%
!! CAGCATTGACTTTAAGAGTC+AGG + chr8_1:64913830-64913849 Msa1207470:intron 40.0%
!! GTTGGTTTGAATCAGGTTGA+TGG - chr8_1:64913962-64913981 None:intergenic 40.0%
!! TGAAGGAGTTGGTTTGAATC+AGG - chr8_1:64913969-64913988 None:intergenic 40.0%
TGATTCAAACCAACTCCTTC+AGG + chr8_1:64913968-64913987 Msa1207470:intron 40.0%
ACAATCAGCAGCTATGTTTC+AGG - chr8_1:64914171-64914190 None:intergenic 40.0%
TGATTGTATCCAACTTTCCC+TGG + chr8_1:64914184-64914203 Msa1207470:intron 40.0%
GTAATTCTACCAGGGAAAGT+TGG - chr8_1:64914196-64914215 None:intergenic 40.0%
GGTCAGTTGTAATTCTACCA+GGG - chr8_1:64914204-64914223 None:intergenic 40.0%
AGGTCAGTTGTAATTCTACC+AGG - chr8_1:64914205-64914224 None:intergenic 40.0%
TGAGAAACCAGAACTAGACT+AGG - chr8_1:64914498-64914517 None:intergenic 40.0%
CTGGTTTCTCAACCATTGTA+TGG + chr8_1:64914507-64914526 Msa1207470:intron 40.0%
AGGTTATATGGACCATGACA+AGG - chr8_1:64914594-64914613 None:intergenic 40.0%
TGGGAATCATGGAGGTTATA+TGG - chr8_1:64914606-64914625 None:intergenic 40.0%
AGTTCAATTGGGAATCATGG+AGG - chr8_1:64914614-64914633 None:intergenic 40.0%
TATTGCCTTGGATCTACCTA+TGG - chr8_1:64914829-64914848 None:intergenic 40.0%
AGGTAGATCCAAGGCAATAA+TGG + chr8_1:64914830-64914849 Msa1207470:exon 40.0%
GGTAGATCCAAGGCAATAAT+GGG + chr8_1:64914831-64914850 Msa1207470:exon 40.0%
ATCGAAGCAATAACCATGGC+AGG + chr8_1:64910287-64910306 Msa1207470:exon 45.0%
! GAGAAACGAACGGGTTTGTT+AGG - chr8_1:64910431-64910450 None:intergenic 45.0%
GATCGCATTGCTGATACTGT+TGG + chr8_1:64910599-64910618 Msa1207470:CDS 45.0%
!! TGGAGGATTGAGCTGTTTTG+CGG + chr8_1:64910754-64910773 Msa1207470:CDS 45.0%
!! ATTGAGCTGTTTTGCGGGTT+TGG + chr8_1:64910760-64910779 Msa1207470:CDS 45.0%
!! TTGAGCTGTTTTGCGGGTTT+GGG + chr8_1:64910761-64910780 Msa1207470:CDS 45.0%
! GTTTGGGATTATTGGCTGTG+TGG + chr8_1:64910777-64910796 Msa1207470:CDS 45.0%
TCCTATGGGTGCATTGTCTA+TGG + chr8_1:64910903-64910922 Msa1207470:intron 45.0%
ACCATAGACAATGCACCCAT+AGG - chr8_1:64910907-64910926 None:intergenic 45.0%
GCCGCAATAGCATGCTTATA+TGG - chr8_1:64911241-64911260 None:intergenic 45.0%
ATGGAGGAATGTCATGGTGA+TGG - chr8_1:64911328-64911347 None:intergenic 45.0%
ATCACCATGACATTCCTCCA+TGG + chr8_1:64911327-64911346 Msa1207470:intron 45.0%
TTATTAAATGGCGGCCATGG+AGG - chr8_1:64911344-64911363 None:intergenic 45.0%
! GTGTTATTAAATGGCGGCCA+TGG - chr8_1:64911347-64911366 None:intergenic 45.0%
CATGTGTGAGTGGAGGTTTA+TGG + chr8_1:64911382-64911401 Msa1207470:intron 45.0%
AATAGGTGTGCTGAAACAGG+GGG + chr8_1:64911436-64911455 Msa1207470:intron 45.0%
GAATGAACAGAGACCTTTGG+TGG + chr8_1:64911462-64911481 Msa1207470:intron 45.0%
! CAAGCAGTGTTTTCCACCAA+AGG - chr8_1:64911478-64911497 None:intergenic 45.0%
CTTTGGTGGAAAACACTGCT+TGG + chr8_1:64911476-64911495 Msa1207470:intron 45.0%
AAGCGATGCTGATGAGTAGT+TGG + chr8_1:64911503-64911522 Msa1207470:intron 45.0%
!! GTTTCTGGTGCCTAAAATCG+AGG + chr8_1:64911622-64911641 Msa1207470:intron 45.0%
! AATTTTGCGCTACAACGCGA+TGG + chr8_1:64911720-64911739 Msa1207470:intron 45.0%
TTTCCACTCCAGCACTATAG+TGG + chr8_1:64911774-64911793 Msa1207470:intron 45.0%
! AATCCACTATAGTGCTGGAG+TGG - chr8_1:64911780-64911799 None:intergenic 45.0%
CATGGAATCCACTATAGTGC+TGG - chr8_1:64911785-64911804 None:intergenic 45.0%
!! CAGCACTATAGTGGATTCCA+TGG + chr8_1:64911783-64911802 Msa1207470:intron 45.0%
! AGACTAGTTAATGGCACCCA+TGG - chr8_1:64911803-64911822 None:intergenic 45.0%
CTAGTCTGTTATCTCGTAGG+TGG + chr8_1:64911816-64911835 Msa1207470:intron 45.0%
AGTCTGTTATCTCGTAGGTG+GGG + chr8_1:64911818-64911837 Msa1207470:intron 45.0%
! GTTGTTTCGAGTGAGGGAAA+AGG + chr8_1:64911932-64911951 Msa1207470:intron 45.0%
GAGTGAGGGAAAAGGTAGAA+TGG + chr8_1:64911940-64911959 Msa1207470:intron 45.0%
GTCAGTCCTAGGTAAAACCT+AGG - chr8_1:64912231-64912250 None:intergenic 45.0%
! AGGTTTTACCTAGGACTGAC+TGG + chr8_1:64912231-64912250 Msa1207470:intron 45.0%
!! CTGTTTTTCCAGTCAGTCCT+AGG - chr8_1:64912242-64912261 None:intergenic 45.0%
GTCGTAATCATGCCTCACAA+TGG + chr8_1:64912450-64912469 Msa1207470:intron 45.0%
!! TACAATCAGGTGCCATTGTG+AGG - chr8_1:64912465-64912484 None:intergenic 45.0%
! ACGTGTTTTTCTCCCTCCAT+TGG + chr8_1:64912599-64912618 Msa1207470:intron 45.0%
! CGTGTTTTTCTCCCTCCATT+GGG + chr8_1:64912600-64912619 Msa1207470:intron 45.0%
! TTTTCTCCCTCCATTGGGAA+CGG + chr8_1:64912605-64912624 Msa1207470:intron 45.0%
TTTATGCCGTTCCCAATGGA+GGG - chr8_1:64912614-64912633 None:intergenic 45.0%
! TTTTATGCCGTTCCCAATGG+AGG - chr8_1:64912615-64912634 None:intergenic 45.0%
AGAAGAAGATCGTGGAATCG+AGG + chr8_1:64912664-64912683 Msa1207470:intron 45.0%
GAAGAAGATCGTGGAATCGA+GGG + chr8_1:64912665-64912684 Msa1207470:intron 45.0%
TCCCTCTTTGCAATGAGAAC+CGG - chr8_1:64912828-64912847 None:intergenic 45.0%
TTGCAGATATCATTCCGTGG+TGG + chr8_1:64912947-64912966 Msa1207470:intron 45.0%
TGCAGATATCATTCCGTGGT+GGG + chr8_1:64912948-64912967 Msa1207470:intron 45.0%
! GTTGCAATTCTCTGGCTTAC+AGG - chr8_1:64913265-64913284 None:intergenic 45.0%
GACTGGATGTTGCAATTCTC+TGG - chr8_1:64913273-64913292 None:intergenic 45.0%
CTACAATCTGGACATTGACC+TGG + chr8_1:64913316-64913335 Msa1207470:intron 45.0%
! TAGGTTTTCTGGGTTTCAGC+TGG + chr8_1:64913465-64913484 Msa1207470:intron 45.0%
! AGGTTTTCTGGGTTTCAGCT+GGG + chr8_1:64913466-64913485 Msa1207470:intron 45.0%
CCTAGCTGATGCACAAAATC+TGG - chr8_1:64913498-64913517 None:intergenic 45.0%
! CCAGATTTTGTGCATCAGCT+AGG + chr8_1:64913495-64913514 Msa1207470:intron 45.0%
TGTGCATCAGCTAGGATTGT+TGG + chr8_1:64913503-64913522 Msa1207470:intron 45.0%
GTGCATCAGCTAGGATTGTT+GGG + chr8_1:64913504-64913523 Msa1207470:intron 45.0%
AATGTGAAGTACGGATCCGA+TGG - chr8_1:64913635-64913654 None:intergenic 45.0%
! TCTTTTCGACCAAAGCGAGA+AGG - chr8_1:64913792-64913811 None:intergenic 45.0%
GCTATCATTCAATCGAGCCA+GGG - chr8_1:64914047-64914066 None:intergenic 45.0%
TGCTATCATTCAATCGAGCC+AGG - chr8_1:64914048-64914067 None:intergenic 45.0%
TGCTCCTTGTATCCTTGTCA+TGG + chr8_1:64914579-64914598 Msa1207470:intron 45.0%
TGGACCATGACAAGGATACA+AGG - chr8_1:64914586-64914605 None:intergenic 45.0%
TCCATATGACAATCTGCGAG+TGG + chr8_1:64914789-64914808 Msa1207470:CDS 45.0%
TCCACTCGCAGATTGTCATA+TGG - chr8_1:64914793-64914812 None:intergenic 45.0%
GTGAACCATAGGTAGATCCA+AGG + chr8_1:64914821-64914840 Msa1207470:exon 45.0%
!! GACTTGCTGAAACCTAGTAC+AGG + chr8_1:64915030-64915049 Msa1207470:three_prime_UTR 45.0%
CATCATTCTCATGCTTCTGG+TGG + chr8_1:64915088-64915107 Msa1207470:three_prime_UTR 45.0%
TTCTGGTGGCTATAGTCAGT+TGG + chr8_1:64915102-64915121 Msa1207470:three_prime_UTR 45.0%
! CAGGCCAAACGACTTCGTTT+TGG - chr8_1:64910193-64910212 None:intergenic 50.0%
! GGACGTAGTGTTTTCCGACA+GGG - chr8_1:64910409-64910428 None:intergenic 50.0%
!! GGAGGATTGAGCTGTTTTGC+GGG + chr8_1:64910755-64910774 Msa1207470:CDS 50.0%
!! GAGGAATGTCATGGTGATGG+TGG - chr8_1:64911325-64911344 None:intergenic 50.0%
ACAGAGACATGTGTGAGTGG+AGG + chr8_1:64911375-64911394 Msa1207470:intron 50.0%
GTCAGCTCAGCTTAGCACAA+AGG + chr8_1:64911549-64911568 Msa1207470:intron 50.0%
ACGCGATGGACACCTTACAT+TGG + chr8_1:64911734-64911753 Msa1207470:intron 50.0%
! TGGACACCTTACATTGGCCT+TGG + chr8_1:64911740-64911759 Msa1207470:intron 50.0%
!! GGACACCTTACATTGGCCTT+GGG + chr8_1:64911741-64911760 Msa1207470:intron 50.0%
!! ACCTTACATTGGCCTTGGGT+AGG + chr8_1:64911745-64911764 Msa1207470:intron 50.0%
ATAAGGGTTTGGGGGAGTGA+AGG + chr8_1:64911971-64911990 Msa1207470:intron 50.0%
AGCAATGCTTTCTCTCGTGC+TGG + chr8_1:64912688-64912707 Msa1207470:intron 50.0%
TCTCTCCCCGATTTCTCATG+TGG + chr8_1:64912721-64912740 Msa1207470:intron 50.0%
GGTCACCACATGAGAAATCG+GGG - chr8_1:64912729-64912748 None:intergenic 50.0%
GGGTCACCACATGAGAAATC+GGG - chr8_1:64912730-64912749 None:intergenic 50.0%
CGGGTCACCACATGAGAAAT+CGG - chr8_1:64912731-64912750 None:intergenic 50.0%
CGGGTCAAAACTGTTCACTC+GGG - chr8_1:64912750-64912769 None:intergenic 50.0%
GCGGGTCAAAACTGTTCACT+CGG - chr8_1:64912751-64912770 None:intergenic 50.0%
ACCCGGTTCTCATTGCAAAG+AGG + chr8_1:64912823-64912842 Msa1207470:intron 50.0%
CCCTCTTTGCAATGAGAACC+GGG - chr8_1:64912827-64912846 None:intergenic 50.0%
CCCGGTTCTCATTGCAAAGA+GGG + chr8_1:64912824-64912843 Msa1207470:intron 50.0%
!! TGGGCTGGTGGATGCTTTAA+GGG - chr8_1:64913202-64913221 None:intergenic 50.0%
! ACATTTCTTACCTGGGCTGG+TGG - chr8_1:64913214-64913233 None:intergenic 50.0%
! AGAGCTGCTACTTAGGTGCT+GGG - chr8_1:64913298-64913317 None:intergenic 50.0%
! TAGAGCTGCTACTTAGGTGC+TGG - chr8_1:64913299-64913318 None:intergenic 50.0%
! GGTTTGGTTAGGTCTGCTCT+AGG + chr8_1:64913764-64913783 Msa1207470:intron 50.0%
AAGTCAATGCTGCCTGTGAC+AGG - chr8_1:64913822-64913841 None:intergenic 50.0%
! TTTTGGCAGCCTGAAGGAGT+TGG - chr8_1:64913980-64913999 None:intergenic 50.0%
GGATTTAACGTAGCTGGGTC+AGG - chr8_1:64914026-64914045 None:intergenic 50.0%
ACCCAGCTACGTTAAATCCC+TGG + chr8_1:64914027-64914046 Msa1207470:intron 50.0%
GCCAGGGATTTAACGTAGCT+GGG - chr8_1:64914031-64914050 None:intergenic 50.0%
AGCCAGGGATTTAACGTAGC+TGG - chr8_1:64914032-64914051 None:intergenic 50.0%
AGATTTGCGGCATGATCGAC+TGG - chr8_1:64914460-64914479 None:intergenic 50.0%
GGCTCTTCGATTCCTGTACT+AGG - chr8_1:64915045-64915064 None:intergenic 50.0%
AGGAATCGAAGAGCCGAATC+TGG + chr8_1:64915050-64915069 Msa1207470:three_prime_UTR 50.0%
GGAGGGATGACGCTACAGAT+CGG - chr8_1:64910364-64910383 None:intergenic 55.0%
! GGGACGTAGTGTTTTCCGAC+AGG - chr8_1:64910410-64910429 None:intergenic 55.0%
!! GAAGCATTGGCGTGGCTTTG+TGG + chr8_1:64910734-64910753 Msa1207470:CDS 55.0%
AAGCATGCTATTGCGGCCGT+TGG + chr8_1:64911244-64911263 Msa1207470:intron 55.0%
GCCTACCCAAGGCCAATGTA+AGG - chr8_1:64911749-64911768 None:intergenic 55.0%
!! TACATTGGCCTTGGGTAGGC+TGG + chr8_1:64911749-64911768 Msa1207470:intron 55.0%
!! ACATTGGCCTTGGGTAGGCT+GGG + chr8_1:64911750-64911769 Msa1207470:intron 55.0%
!! CTGGGCTGGTGGATGCTTTA+AGG - chr8_1:64913203-64913222 None:intergenic 55.0%
! CTTAAAGCATCCACCAGCCC+AGG + chr8_1:64913201-64913220 Msa1207470:intron 55.0%
! ATGCAGCACTGAGAAGCGCA+AGG + chr8_1:64913238-64913257 Msa1207470:intron 55.0%
!! TACTTAGGTGCTGGGAGGAC+TGG - chr8_1:64913290-64913309 None:intergenic 55.0%
CTCTAGGCACCTTCTCGCTT+TGG + chr8_1:64913780-64913799 Msa1207470:intron 55.0%
TTGCGGCATGATCGACTGGA+TGG - chr8_1:64914456-64914475 None:intergenic 55.0%
GACAATCTGCGAGTGGAGCT+TGG + chr8_1:64914796-64914815 Msa1207470:CDS 55.0%
AATCTGCGAGTGGAGCTTGG+TGG + chr8_1:64914799-64914818 Msa1207470:CDS 55.0%
!! GGAGCTTGGTGGTGAACCAT+AGG + chr8_1:64914810-64914829 Msa1207470:CDS 55.0%
!! GCATTGGCGTGGCTTTGTGG+AGG + chr8_1:64910737-64910756 Msa1207470:CDS 60.0%
GGCCGTTGGCACCATCATGA+CGG + chr8_1:64911258-64911277 Msa1207470:intron 60.0%
GCCGTTGGCACCATCATGAC+GGG + chr8_1:64911259-64911278 Msa1207470:intron 60.0%
! GCCCGTCATGATGGTGCCAA+CGG - chr8_1:64911263-64911282 None:intergenic 60.0%
!! TGAAGGGGTGCCCGTCATGA+TGG - chr8_1:64911272-64911291 None:intergenic 60.0%
GCGGCCATGGAGGAATGTCA+TGG - chr8_1:64911334-64911353 None:intergenic 60.0%
!! CATTGGCCTTGGGTAGGCTG+GGG + chr8_1:64911751-64911770 Msa1207470:intron 60.0%
TGGAAACCCCAGCCTACCCA+AGG - chr8_1:64911760-64911779 None:intergenic 60.0%
GAGCGCGCAGAAGAAGATCG+TGG + chr8_1:64912656-64912675 Msa1207470:intron 60.0%
!! GCTGCTACTTAGGTGCTGGG+AGG - chr8_1:64913295-64913314 None:intergenic 60.0%
! GGGTCAGGCCAGTTCAGGTT+TGG - chr8_1:64914011-64914030 None:intergenic 60.0%
TAGCTGGGTCAGGCCAGTTC+AGG - chr8_1:64914016-64914035 None:intergenic 60.0%
TCCGGCATGGGTCTCCCTGT+CGG + chr8_1:64910392-64910411 Msa1207470:CDS 65.0%
TCCGACAGGGAGACCCATGC+CGG - chr8_1:64910396-64910415 None:intergenic 65.0%
CTTCTGCGCGCTCACTGCTC+CGG - chr8_1:64912649-64912668 None:intergenic 65.0%
TCATCCCTCCGCCTCCGCTC+CGG + chr8_1:64910374-64910393 Msa1207470:CDS 70.0%
CAGGGAGACCCATGCCGGAG+CGG - chr8_1:64910391-64910410 None:intergenic 70.0%
CATGCCGGAGCGGAGGCGGA+GGG - chr8_1:64910381-64910400 None:intergenic 75.0%
CTCCGCCTCCGCTCCGGCAT+GGG + chr8_1:64910380-64910399 Msa1207470:CDS 75.0%
GACCCATGCCGGAGCGGAGG+CGG - chr8_1:64910385-64910404 None:intergenic 75.0%
GGAGACCCATGCCGGAGCGG+AGG - chr8_1:64910388-64910407 None:intergenic 75.0%
! CCATGCCGGAGCGGAGGCGG+AGG - chr8_1:64910382-64910401 None:intergenic 80.0%
! CCTCCGCCTCCGCTCCGGCA+TGG + chr8_1:64910379-64910398 Msa1207470:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 64910183 64915375 64910183 ID=Msa1207470;Name=Msa1207470
chr8_1 mRNA 64910183 64915375 64910183 ID=Msa1207470-mRNA-1;Parent=Msa1207470;Name=Msa1207470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=119|1|1|1|0.5|0.6|5|444|125
chr8_1 exon 64910183 64910439 64910183 ID=Msa1207470-mRNA-1:exon:21295;Parent=Msa1207470-mRNA-1
chr8_1 exon 64910539 64910625 64910539 ID=Msa1207470-mRNA-1:exon:21296;Parent=Msa1207470-mRNA-1
chr8_1 exon 64910731 64910826 64910731 ID=Msa1207470-mRNA-1:exon:21297;Parent=Msa1207470-mRNA-1
chr8_1 exon 64914775 64914902 64914775 ID=Msa1207470-mRNA-1:exon:21298;Parent=Msa1207470-mRNA-1
chr8_1 exon 64915003 64915375 64915003 ID=Msa1207470-mRNA-1:exon:21299;Parent=Msa1207470-mRNA-1
chr8_1 five_prime_UTR 64910183 64910301 64910183 ID=Msa1207470-mRNA-1:five_prime_utr;Parent=Msa1207470-mRNA-1
chr8_1 CDS 64910302 64910439 64910302 ID=Msa1207470-mRNA-1:cds;Parent=Msa1207470-mRNA-1
chr8_1 CDS 64910539 64910625 64910539 ID=Msa1207470-mRNA-1:cds;Parent=Msa1207470-mRNA-1
chr8_1 CDS 64910731 64910826 64910731 ID=Msa1207470-mRNA-1:cds;Parent=Msa1207470-mRNA-1
chr8_1 CDS 64914775 64914831 64914775 ID=Msa1207470-mRNA-1:cds;Parent=Msa1207470-mRNA-1
chr8_1 three_prime_UTR 64914832 64914902 64914832 ID=Msa1207470-mRNA-1:three_prime_utr;Parent=Msa1207470-mRNA-1
chr8_1 three_prime_UTR 64915003 64915375 64915003 ID=Msa1207470-mRNA-1:three_prime_utr;Parent=Msa1207470-mRNA-1
Gene Sequence

>Msa1207470

ATGGCAGGTAGATTAACAAACGTAGCATCACAAATCTTAGGCGGAAACAGCGTCGTTCACCGATCTGTAGCGTCATCCCTCCGCCTCCGCTCCGGCATGGGTCTCCCTGTCGGAAAACACTACGTCCCTAACAAACCCCTTCCGGTGAATGAAGAACTAACATGGGACAATGGTACTCCATTTCCTGAACCTTGTATAGATCGCATTGCTGATACTGTTGGAAAGTATGAAGCATTGGCGTGGCTTTGTGGAGGATTGAGCTGTTTTGCGGGTTTGGGATTATTGGCTGTGTGGAATGATAAAGCTTCCAAGACACCATTTGCACCCAAAGTTTATCCATATGACAATCTGCGAGTGGAGCTTGGTGGTGAACCATAG

Protein sequence

>Msa1207470

MAGRLTNVASQILGGNSVVHRSVASSLRLRSGMGLPVGKHYVPNKPLPVNEELTWDNGTPFPEPCIDRIADTVGKYEALAWLCGGLSCFAGLGLLAVWNDKASKTPFAPKVYPYDNLRVELGGEP*