AlfalfaGEDB | Msa0825240

M. sativa cultivar zhongmu-4 / Msa0825240

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009
PFAM: PF06972.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825240	XP_003617862.1	98.318	773	13	0	1	773	1	773	0.0	1530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825240	sp\|Q8VZS6\|GIP1_ARATH	44.366	142	65	3	5	145	3	131	7.67e-28	122
Msa0825240	sp\|Q8VZS6\|GIP1_ARATH	29.227	414	189	18	371	773	247	567	3.21e-14	80.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825240	G7KEK0	98.318	773	13	0	1	773	1	773	0.0	1530

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa0825240	0.811085	8.350083e-51	-8.615850e-47
Msa0042980	Msa0825240	0.830564	2.735511e-55	-8.615850e-47
Msa0044540	Msa0825240	0.800824	1.202035e-48	-8.615850e-47
Msa0050380	Msa0825240	-0.815517	8.875869e-52	-8.615850e-47
Msa0054730	Msa0825240	0.827830	1.259793e-54	-8.615850e-47
Msa0063350	Msa0825240	0.861422	1.037556e-63	-8.615850e-47
Msa0075880	Msa0825240	-0.805276	1.443148e-49	-8.615850e-47
Msa0091210	Msa0825240	0.826401	2.767653e-54	-8.615850e-47
Msa0091250	Msa0825240	0.830635	2.628894e-55	-8.615850e-47
Msa0125640	Msa0825240	0.804493	2.103636e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825240	MtrunA17_Chr5g0446841	98.318	773	13	0	1	773	1	773	0.0	1530
Msa0825240	MtrunA17_Chr5g0429151	35.045	896	421	28	9	773	3	868	1.55e-106	346
Msa0825240	MtrunA17_Chr8g0343521	59.155	71	27	2	6	76	9	77	1.34e-17	87.8
Msa0825240	MtrunA17_Chr8g0343521	31.356	236	122	14	565	773	784	1006	3.67e-11	67.0
Msa0825240	MtrunA17_Chr8g0380271	41.758	91	47	3	1	89	1	87	2.45e-12	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825240	AT3G07660.1	36.701	485	216	17	371	773	366	841	1.23e-59	217
Msa0825240	AT3G07660.1	40.650	123	73	0	9	131	3	125	9.05e-19	92.0
Msa0825240	AT3G13222.1	44.366	142	65	3	5	145	3	131	7.80e-29	122
Msa0825240	AT3G13222.1	29.227	414	189	18	371	773	247	567	3.26e-15	80.1
Msa0825240	AT1G55820.1	29.962	524	280	20	279	773	110	575	9.30e-27	116
Msa0825240	AT1G55820.1	46.043	139	61	5	9	147	6	130	2.97e-26	114
Msa0825240	AT3G13990.1	27.719	285	167	10	1	271	2	261	1.06e-13	75.5
Msa0825240	AT3G13990.2	27.719	285	167	10	1	271	2	261	1.10e-13	75.5
Msa0825240	AT4G18150.1	36.029	136	70	6	7	130	2	132	1.05e-12	72.4

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Find 259 sgRNAs with CRISPR-Local

Find 660 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACGTGGACAGGGGA+GGG	0.506744	5_3:-64962136	Msa0825240:CDS
AAAATTGATGCATTGGAGAC+AGG	0.452279	5_3:+64956834	None:intergenic
AAACAACGTGGACAGGGGAG+GGG	0.518758	5_3:-64962135	Msa0825240:CDS
AAACCATTTCCAAGTGCCTG+AGG	0.602183	5_3:-64959874	Msa0825240:CDS
AAACCGGACATATCTTGGCC+TGG	0.562751	5_3:+64956290	None:intergenic
AAACTTTACCTTGAGGTGGT+TGG	0.528234	5_3:+64960460	None:intergenic
AAAGAGACACTGGCTTCTGA+AGG	0.600009	5_3:-64958552	Msa0825240:CDS
AAAGATTGAGCAGCCAAAGC+AGG	0.517956	5_3:-64958505	Msa0825240:CDS
AAAGGTTTGAGTAGGAGAAG+TGG	0.542499	5_3:+64960851	None:intergenic
AAATGTACCAGGAAAGTTTG+AGG	0.546172	5_3:+64962086	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTCTTAAAGAATCAAACA+TGG	-	chr5_3:64955812-64955831	Msa0825240:three_prime_UTR	30.0%
AAGCTTACAAAATGGGATTT+AGG	-	chr5_3:64956450-64956469	Msa0825240:intron	30.0%
CGAAATAGCTAATACAAACA+GGG	+	chr5_3:64956476-64956495	None:intergenic	30.0%
TCGAAATAGCTAATACAAAC+AGG	+	chr5_3:64956477-64956496	None:intergenic	30.0%
AAGCTTATGACATTGTTCAA+AGG	+	chr5_3:64956586-64956605	None:intergenic	30.0%
GCTTATTTGAGCTTATCTAT+TGG	+	chr5_3:64956648-64956667	None:intergenic	30.0%
TTAACTCCTCTACTAGTAAT+GGG	+	chr5_3:64956999-64957018	None:intergenic	30.0%
ATTGCATTTGAAAGTTAGGT+TGG	-	chr5_3:64957159-64957178	Msa0825240:intron	30.0%
CATGTATATTCAGACAGTTA+GGG	+	chr5_3:64957285-64957304	None:intergenic	30.0%
TGAATATACATGGTTGCAAT+AGG	-	chr5_3:64957293-64957312	Msa0825240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	64955612	64964107	64955612	ID=Msa0825240;Name=Msa0825240
chr5_3	mRNA	64955612	64964107	64955612	ID=Msa0825240-mRNA-1;Parent=Msa0825240;Name=Msa0825240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75\|1\|1\|1\|1\|1\|9\|440\|773
chr5_3	exon	64955612	64956342	64955612	ID=Msa0825240-mRNA-1:exon:20301;Parent=Msa0825240-mRNA-1
chr5_3	exon	64956559	64956999	64956559	ID=Msa0825240-mRNA-1:exon:20300;Parent=Msa0825240-mRNA-1
chr5_3	exon	64958347	64958644	64958347	ID=Msa0825240-mRNA-1:exon:20299;Parent=Msa0825240-mRNA-1
chr5_3	exon	64959735	64959984	64959735	ID=Msa0825240-mRNA-1:exon:20298;Parent=Msa0825240-mRNA-1
chr5_3	exon	64960469	64961049	64960469	ID=Msa0825240-mRNA-1:exon:20297;Parent=Msa0825240-mRNA-1
chr5_3	exon	64961516	64961648	64961516	ID=Msa0825240-mRNA-1:exon:20296;Parent=Msa0825240-mRNA-1
chr5_3	exon	64962094	64962193	64962094	ID=Msa0825240-mRNA-1:exon:20295;Parent=Msa0825240-mRNA-1
chr5_3	exon	64962783	64962826	64962783	ID=Msa0825240-mRNA-1:exon:20294;Parent=Msa0825240-mRNA-1
chr5_3	exon	64963849	64964107	64963849	ID=Msa0825240-mRNA-1:exon:20293;Parent=Msa0825240-mRNA-1
chr5_3	five_prime_UTR	64964033	64964107	64964033	ID=Msa0825240-mRNA-1:five_prime_utr;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64963849	64964032	64963849	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64962783	64962826	64962783	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64962094	64962193	64962094	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64961516	64961648	64961516	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64960469	64961049	64960469	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64959735	64959984	64959735	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64958347	64958644	64958347	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64956559	64956999	64956559	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	CDS	64956052	64956342	64956052	ID=Msa0825240-mRNA-1:cds;Parent=Msa0825240-mRNA-1
chr5_3	three_prime_UTR	64955612	64956051	64955612	ID=Msa0825240-mRNA-1:three_prime_utr;Parent=Msa0825240-mRNA-1

Gene Sequence

>Msa0825240

ATGAGCGGCGGCCGCGGTGGTGGTGGTGGCGGGTCTAGGGTTCCGATCCCCAACAATGTACGGAAAACCATCCACGACATCAGAGAGATCACCGGAAAACAACACACCGACGACGAAATCTTCTCCGTTCTTAAAGAATCAAACATGGATCCCAATGAAACTACTCAAAAGCTTCTCTATCTAGATACTTTTCATGAAGTAAGAAGGAGACGCGACCGCAGAAAAGAAGGATTGAGCAGCAGGGTTTCTGAGGAGTCTAGATCAAAACAACGTGGACAGGGGAGGGGAGCAAGAGGTTTTTCGGGGGGCTATTCCTCAAACTTTCCTGATGGTGGTGGTGGTGGGAGGAACCTTCCTATTCGAAGGGAAAATGGAGTCCATCACATTGCAGAGAGAACTCATGCTTCCTCTACTCAGCCAGATTTACAGAAAAACACTAATGCAGCACCCCAAGCCTCAAGAGGTTCAGCTGTTGCACCCCGTAGTGCTGCAAATCAATCCAATGGGAAGTCTGGTCACGGTTCTTCTGGCCAATCTCTTATAGGTAGTGTTGTTAGTGTCCCACAAAGTAGTTCAGCTTCTAATGACACTGTCAATCAAGAAACTGTGCAACCTCAAGCTGTTGTTGTTGCAGCAACCACTTCTCCTACTCAAACCTTTGCCTCAATTACAAGAACTGACCAAGGAAAATCTCTCTCAAGTTCTGATCAACATCAAATTTCTGTACCGGGTGTTTGTTCCTCTTCAGATCCTGTGCTGGCACCATCTATCTCCCAGATTCCTGGTGTTGGCGGTGCTGTCAGTAAGGAAGTAGGGAGTGACCGGATATCTGCTGGGCCAAATCATGTTAAAGGAAACAAACTTGAAGAAGCTGGTGATTTATCAGCATCCGAGAATGATAAGTCCGGGTCCATGAATTCAACAAGCAACCCGAATGCAATACCAAAGTCAAATGAAGTTGAAAGTAACCGGTTATCTGAGCCCTTGCAACTCTCATCGTCTTCATCATTGACTTCCAGTTGCGTTAGCCAACCACCTCAAGATGTTTCTAAAACAGCCAATGTCACAGAGGTCTCAACTTCAGAAGCTCCTGTGCAGTCAACTGAGTTGAGGCAACATGTTACTTTTCCAAACCATTTCCAAGTGCCTGAGGCTTTAAAAGGTGGTCTGACATTTGGAAGCTTCGATACTTTTGATCCAAGTGAAAAATCTAGCAGTGTAACTGGTTGTGACAATAGCACTTCTCCCACTCCTGAATCTTCTTCAGTGAATGCTGAAACTGTTAATTCAAGCAACCAAAGCGCACCATTGCCCGAACACGGAGATCATCTTGATCATGCACATTCTTCATCTTATTTAATTAAAGAGACACTGGCTTCTGAAGGCATATCTATAACTGGTAATGATTCAAAGATTGAGCAGCCAAAGCAGGAGGTATTGTTAACTCCCGAGGGCCATCCAATTCTGACTGTTCAAAGTGCTCAAAACTATGGTTTGAATTTCATGTCTACCATGTTAGGGACTCAGCAAGTTCAATTTGAGGGTAGTGAGCTTCAGGCGCAAGAAACACCACACTTCCCTTCCTTTGTTACTGCAAGTTCTCAGGCTGTGTCTCCCAGCCCAACTCCACCTCTACAGAGCTCTATACCTGTTTCTCCACAGCCCGTTTCTTATTTTAGGCCACCATACCCAGCTAACTTCTTCCCATATGGCCCCTATTACCCCCCAATTTACCTGTCTCCAATGCATCAATTTTTAAGCCACAATGGTTTCCCTCAACAGCCATCAGCTGGTAACATGTATCTACCAGCCGCGGCTGCAGCTGCTGGGATCAAGTTCCCTCTCCCGCAATTCAAGGCTGGAGCGAACACAGGAAATATGGCTCATATTGGAATTCCTTCGGGATCATATATCACTCCACCTGTTGGATATGCTCCTAGTCCGACCGTGAATACTGGAAGCTCTGCCGGAAATGAAGATACTGCAGTGTCTCAGTTGAAAGAAAACCAGATCTATACAACTGGACAACTGAGTGAAGGCTCTGCTGTGTGGATACATGCACCAGGCCAAGATATGTCCGGTTTGCAACTTAATTCTCTATATAACCTTGCCCCTCAAGGGCAACATCTCACCTTCCCCCAGACACAGGCTGCTCACGGAGCATTTCCCGGTATCTATCAACCAGGGCAGACAGTAGCTTCACCTTCTACCCTTTTGCAGCAGTCTCAAGCTGTTGCTGGGCCTGTTGAAACTGTAGGCCCGCCTCCAGGATCTTATCAGCAGCTACCGCCTTCTCAGATCAATTGGAATTCTAATTTTTAG

Protein sequence

>Msa0825240

MSGGRGGGGGGSRVPIPNNVRKTIHDIREITGKQHTDDEIFSVLKESNMDPNETTQKLLYLDTFHEVRRRRDRRKEGLSSRVSEESRSKQRGQGRGARGFSGGYSSNFPDGGGGGRNLPIRRENGVHHIAERTHASSTQPDLQKNTNAAPQASRGSAVAPRSAANQSNGKSGHGSSGQSLIGSVVSVPQSSSASNDTVNQETVQPQAVVVAATTSPTQTFASITRTDQGKSLSSSDQHQISVPGVCSSSDPVLAPSISQIPGVGGAVSKEVGSDRISAGPNHVKGNKLEEAGDLSASENDKSGSMNSTSNPNAIPKSNEVESNRLSEPLQLSSSSSLTSSCVSQPPQDVSKTANVTEVSTSEAPVQSTELRQHVTFPNHFQVPEALKGGLTFGSFDTFDPSEKSSSVTGCDNSTSPTPESSSVNAETVNSSNQSAPLPEHGDHLDHAHSSSYLIKETLASEGISITGNDSKIEQPKQEVLLTPEGHPILTVQSAQNYGLNFMSTMLGTQQVQFEGSELQAQETPHFPSFVTASSQAVSPSPTPPLQSSIPVSPQPVSYFRPPYPANFFPYGPYYPPIYLSPMHQFLSHNGFPQQPSAGNMYLPAAAAAAGIKFPLPQFKAGANTGNMAHIGIPSGSYITPPVGYAPSPTVNTGSSAGNEDTAVSQLKENQIYTTGQLSEGSAVWIHAPGQDMSGLQLNSLYNLAPQGQHLTFPQTQAAHGAFPGIYQPGQTVASPSTLLQQSQAVAGPVETVGPPPGSYQQLPPSQINWNSNF*