AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741510 MtrunA17_Chr5g0442931 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0741510 MtrunA17_Chr5g0442901 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0741510 MtrunA17_Chr2g0328821 100.000 178 0 0 1 178 17 194 3.33e-133 370
Msa0741510 MtrunA17_Chr3g0095911 94.382 178 10 0 1 178 1 178 2.58e-125 350
Msa0741510 MtrunA17_Chr2g0286131 62.353 85 32 0 92 176 1 85 2.93e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741510 AT2G34480.1 90.230 174 17 0 5 178 5 178 3.01e-119 335
Msa0741510 AT2G34480.2 90.230 174 17 0 5 178 44 217 3.24e-119 336
Msa0741510 AT1G29965.1 87.079 178 23 0 1 178 1 178 1.24e-117 330
Msa0741510 AT3G14600.1 87.079 178 23 0 1 178 1 178 4.20e-117 329
Msa0741510 AT1G29970.2 89.017 173 19 0 6 178 140 312 1.08e-114 328

Find 61 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGAAACTTACCAGAATT+TGG 0.167108 5_1:-61231158 None:intergenic
CACCAGAGGGAACTTGATTT+TGG 0.187302 5_1:-61232962 None:intergenic
CATAAACAGGTTGGGCTTCT+TGG 0.201042 5_1:-61233034 None:intergenic
AGATTAAGAACTATGGAATT+TGG 0.243479 5_1:+61232740 Msa0741510:CDS
GAAAAGTAATGGACAAGTTT+TGG 0.246012 5_1:+61231286 Msa0741510:CDS
GTTGGGCTTCTTGGCTTTGT+AGG 0.248408 5_1:-61233025 None:intergenic
CACATTTCGCTTCTCATATT+GGG 0.263107 5_1:+61233070 Msa0741510:three_prime_UTR
TCACATTTCGCTTCTCATAT+TGG 0.265029 5_1:+61233069 Msa0741510:three_prime_UTR
TGTTTGTGCACTCTTATTGC+TGG 0.314155 5_1:+61233326 Msa0741510:three_prime_UTR
AGATTTATCGCATGAAGCTT+TGG 0.341025 5_1:+61231110 Msa0741510:CDS
AACTTACCAGAATTTGGATT+TGG 0.348831 5_1:-61231152 None:intergenic
ACGAGATGGCATCTCGTCAT+AGG 0.358917 5_1:+61232851 Msa0741510:CDS
CCTACCAAGATTAAGAACTA+TGG 0.366976 5_1:+61232733 Msa0741510:CDS
GATTTATCGCATGAAGCTTT+GGG 0.367321 5_1:+61231111 Msa0741510:CDS
TTCGTGCCAAATCCAAATTC+TGG 0.381119 5_1:+61231146 Msa0741510:CDS
AAGCTTCATGCGATAAATCT+TGG 0.383045 5_1:-61231107 None:intergenic
TCCCGGCTAATCTGTGCAAA+AGG 0.396699 5_1:+61232914 Msa0741510:CDS
AATTCCATAGTTCTTAATCT+TGG 0.403701 5_1:-61232737 None:intergenic
ATTCACTGAATCACATAAAC+AGG 0.404006 5_1:-61233047 None:intergenic
GCTCATTAGCTATGAGCATC+TGG 0.427165 5_1:-61233367 None:intergenic
AGAAGATAAAACAAAATTCT+CGG 0.437500 5_1:-61233201 None:intergenic
TACCGTGATACTACTCTAAA+CGG 0.441043 5_1:+61232808 Msa0741510:CDS
GGATTTGGCACGAACCTCAT+TGG 0.442665 5_1:-61231137 None:intergenic
AGTCTTAATGATTTGAATGC+AGG 0.447032 5_1:-61232884 None:intergenic
CTCTGGTGTACAAGAAGATT+AGG 0.461451 5_1:+61232977 Msa0741510:CDS
AGCTTCATGCGATAAATCTT+GGG 0.476384 5_1:-61231106 None:intergenic
CTGAATCACATAAACAGGTT+GGG 0.486125 5_1:-61233042 None:intergenic
CTCTTCCAACAACCTGGTAC+TGG 0.489846 5_1:-61231057 None:intergenic
TTTCTTGAGGAAGTTGAAGA+AGG 0.490067 5_1:+61231259 Msa0741510:CDS
TGGCATCTCGTCATAGGGTC+AGG 0.497058 5_1:+61232857 Msa0741510:CDS
TTTCACCAGTACCAGGTTGT+TGG 0.499494 5_1:+61231052 Msa0741510:CDS
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 5_1:+61232763 Msa0741510:CDS
TAGCGATCACTTTATTTCGA+AGG 0.517130 5_1:+61233284 Msa0741510:three_prime_UTR
AAGAAGGTTAAGAAAAGTAA+TGG 0.518066 5_1:+61231275 Msa0741510:CDS
CGATCACTTTATTTCGAAGG+AGG 0.532163 5_1:+61233287 Msa0741510:three_prime_UTR
GTTTGTGCACTCTTATTGCT+GGG 0.537088 5_1:+61233327 Msa0741510:three_prime_UTR
TGGGAAGAACAAAGTTGTGT+TGG 0.537271 5_1:+61233404 Msa0741510:three_prime_UTR
CCCGGCTAATCTGTGCAAAA+GGG 0.540578 5_1:+61232915 Msa0741510:CDS
AAGAGCACTTCCCACCGAAA+AGG 0.541834 5_1:+61231075 Msa0741510:CDS
CGAGATGGCATCTCGTCATA+GGG 0.544710 5_1:+61232852 Msa0741510:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 5_1:-61232733 None:intergenic
GAAACAGTTTCACCAGTACC+AGG 0.549157 5_1:+61231045 Msa0741510:intron
TTCCAAAATCAAGTTCCCTC+TGG 0.549470 5_1:+61232960 Msa0741510:CDS
ACTGAATCACATAAACAGGT+TGG 0.563649 5_1:-61233043 None:intergenic
GATCACTTTATTTCGAAGGA+GGG 0.564288 5_1:+61233288 Msa0741510:three_prime_UTR
GTCTTAATGATTTGAATGCA+GGG 0.566014 5_1:-61232883 None:intergenic
ATGCTCATAGCTAATGAGCT+AGG 0.567864 5_1:+61233371 Msa0741510:three_prime_UTR
CATTAAGACTGCCACCATCC+CGG 0.574553 5_1:+61232897 Msa0741510:CDS
TTTGCACAGATTAGCCGGGA+TGG 0.581078 5_1:-61232911 None:intergenic
ATTCTCGGTAAGCAACAACT+AGG 0.600835 5_1:-61233186 None:intergenic
AGAAGATTAGGCCACCAACT+AGG 0.603627 5_1:+61232989 Msa0741510:CDS
TGGTTATCACAATATGTACA+AGG 0.613559 5_1:+61232783 Msa0741510:CDS
GAAGTGCTCTTCCAACAACC+TGG 0.619307 5_1:-61231063 None:intergenic
GCACAGATTAGCCGGGATGG+TGG 0.623109 5_1:-61232908 None:intergenic
GAAGCTTTGGGCAACCAATG+AGG 0.630309 5_1:+61231123 Msa0741510:CDS
CTAATCTTCTTGTACACCAG+AGG 0.631597 5_1:-61232976 None:intergenic
TAATCTTCTTGTACACCAGA+GGG 0.642722 5_1:-61232975 None:intergenic
ATTGTTGTAGGTATTTCTTG+AGG 0.651477 5_1:+61231246 Msa0741510:intron
GGAGACAATGTACAACGAGA+TGG 0.663821 5_1:+61232837 Msa0741510:CDS
CGCCGTTTAGAGTAGTATCA+CGG 0.671590 5_1:-61232810 None:intergenic
TACTACTCTAAACGGCGCTG+TGG 0.679213 5_1:+61232816 Msa0741510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATGTTAATTGTTGT+AGG + chr5_1:61231234-61231253 Msa0741510:intron 15.0%
!! TTAATTGAAATTTGATAGAA+GGG + chr5_1:61231346-61231365 Msa0741510:intron 15.0%
!! GAATAGAAAAAATTAATGAT+AGG + chr5_1:61231621-61231640 Msa0741510:intron 15.0%
!! AAAGCAACAAATAAAAAAAA+TGG - chr5_1:61232213-61232232 None:intergenic 15.0%
!! CAAAATAAAATCAGTTCAAA+AGG - chr5_1:61230993-61231012 None:intergenic 20.0%
!! TCTATCAAATTTCAATTAAC+AGG - chr5_1:61231345-61231364 None:intergenic 20.0%
!! GTTAATTGAAATTTGATAGA+AGG + chr5_1:61231345-61231364 Msa0741510:intron 20.0%
!! GTAAATAAAAACAAATAAGC+TGG - chr5_1:61231423-61231442 None:intergenic 20.0%
!! ATATTAGTATATTGTACAGT+TGG + chr5_1:61231692-61231711 Msa0741510:intron 20.0%
!!! ATTTTAAGTAGATAGTACTT+TGG + chr5_1:61232274-61232293 Msa0741510:intron 20.0%
!! AGTCACAATATACAATTTAA+AGG - chr5_1:61232502-61232521 None:intergenic 20.0%
!! AGAAGATAAAACAAAATTCT+CGG - chr5_1:61233204-61233223 None:intergenic 20.0%
! AATAAAATCAGTTCAAAAGG+TGG - chr5_1:61230990-61231009 None:intergenic 25.0%
! ATTAGAAACTTACCAGAATT+TGG - chr5_1:61231161-61231180 None:intergenic 25.0%
! AAGAAGGTTAAGAAAAGTAA+TGG + chr5_1:61231275-61231294 Msa0741510:CDS 25.0%
! TCAAATTTCAATTAACAGGT+AGG - chr5_1:61231341-61231360 None:intergenic 25.0%
!! TGCATGTAAAAGCTTTTATT+TGG + chr5_1:61231525-61231544 Msa0741510:intron 25.0%
! ATGCTTGAGAAAATTAAGTT+TGG + chr5_1:61232178-61232197 Msa0741510:intron 25.0%
! TTATGTTGAAATCCAAACAT+AGG + chr5_1:61232438-61232457 Msa0741510:intron 25.0%
! AAATGATGTATTGTCATAAC+TGG - chr5_1:61232467-61232486 None:intergenic 25.0%
! AATTCCATAGTTCTTAATCT+TGG - chr5_1:61232740-61232759 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG + chr5_1:61232740-61232759 Msa0741510:CDS 25.0%
!! TTTTTCTCTTTATGATGTAC+TGG + chr5_1:61233241-61233260 Msa0741510:three_prime_UTR 25.0%
! ATTTTGTGTGAATCGTAACA+CGG + chr5_1:61231007-61231026 Msa0741510:intron 30.0%
AACTTACCAGAATTTGGATT+TGG - chr5_1:61231155-61231174 None:intergenic 30.0%
ATTGTTGTAGGTATTTCTTG+AGG + chr5_1:61231246-61231265 Msa0741510:intron 30.0%
!!! GAAAAGTAATGGACAAGTTT+TGG + chr5_1:61231286-61231305 Msa0741510:CDS 30.0%
TACTTAGACTGTGTTTAGAT+TGG + chr5_1:61231389-61231408 Msa0741510:intron 30.0%
TGGTTAAACAAGTGCTTATA+AGG - chr5_1:61231561-61231580 None:intergenic 30.0%
!! AGAGGAGAAAGTTATTTCTT+AGG + chr5_1:61231666-61231685 Msa0741510:intron 30.0%
!! GAGGAGAAAGTTATTTCTTA+GGG + chr5_1:61231667-61231686 Msa0741510:intron 30.0%
ACAACCAGAATATCATTAGA+GGG - chr5_1:61231826-61231845 None:intergenic 30.0%
ATGTAATATCTGTCAGTTCT+TGG + chr5_1:61231938-61231957 Msa0741510:intron 30.0%
TTCTGCTAAAGACAACAAAA+AGG - chr5_1:61231983-61232002 None:intergenic 30.0%
TTCTTCAATAGACATCAAAG+AGG - chr5_1:61232074-61232093 None:intergenic 30.0%
! TGAGAAAATTAAGTTTGGTG+CGG + chr5_1:61232183-61232202 Msa0741510:intron 30.0%
TAAGTAGATAGTACTTTGGT+TGG + chr5_1:61232278-61232297 Msa0741510:intron 30.0%
!! ATAGTACTTTGGTTGGTAAA+GGG + chr5_1:61232285-61232304 Msa0741510:intron 30.0%
AATTGTTGTGAGAGAATTCT+TGG + chr5_1:61232601-61232620 Msa0741510:intron 30.0%
TAATAGCTAAAGCAAACACA+GGG - chr5_1:61232637-61232656 None:intergenic 30.0%
! ACCTTCAATTTCCATCTTTT+TGG + chr5_1:61232661-61232680 Msa0741510:intron 30.0%
TCCAAAAAGATGGAAATTGA+AGG - chr5_1:61232665-61232684 None:intergenic 30.0%
! ATTTCCATCTTTTTGGACAT+AGG + chr5_1:61232668-61232687 Msa0741510:intron 30.0%
! TTTCCATCTTTTTGGACATA+GGG + chr5_1:61232669-61232688 Msa0741510:intron 30.0%
TGGTTATCACAATATGTACA+AGG + chr5_1:61232783-61232802 Msa0741510:CDS 30.0%
GTCTTAATGATTTGAATGCA+GGG - chr5_1:61232886-61232905 None:intergenic 30.0%
AGTCTTAATGATTTGAATGC+AGG - chr5_1:61232887-61232906 None:intergenic 30.0%
ATTCACTGAATCACATAAAC+AGG - chr5_1:61233050-61233069 None:intergenic 30.0%
AGCAAAAATGGTTAACGCTA+AGG + chr5_1:61230935-61230954 Msa0741510:exon 35.0%
! TTTTGTGTGAATCGTAACAC+GGG + chr5_1:61231008-61231027 Msa0741510:intron 35.0%
AGCTTCATGCGATAAATCTT+GGG - chr5_1:61231109-61231128 None:intergenic 35.0%
AAGCTTCATGCGATAAATCT+TGG - chr5_1:61231110-61231129 None:intergenic 35.0%
AGATTTATCGCATGAAGCTT+TGG + chr5_1:61231110-61231129 Msa0741510:CDS 35.0%
GATTTATCGCATGAAGCTTT+GGG + chr5_1:61231111-61231130 Msa0741510:CDS 35.0%
TTTCTTGAGGAAGTTGAAGA+AGG + chr5_1:61231259-61231278 Msa0741510:CDS 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG + chr5_1:61231298-61231317 Msa0741510:CDS 35.0%
!! TAACTCCACAGCTGTTTTAA+GGG - chr5_1:61231590-61231609 None:intergenic 35.0%
!! TTAACTCCACAGCTGTTTTA+AGG - chr5_1:61231591-61231610 None:intergenic 35.0%
CTGTGGAGTTAATGTTAAGT+TGG + chr5_1:61231599-61231618 Msa0741510:intron 35.0%
CATAAATGGAGGTAAATGGA+TGG - chr5_1:61231778-61231797 None:intergenic 35.0%
CTCTCATAAATGGAGGTAAA+TGG - chr5_1:61231782-61231801 None:intergenic 35.0%
GTTTGTGTCTCTCTCATAAA+TGG - chr5_1:61231792-61231811 None:intergenic 35.0%
CACAACCAGAATATCATTAG+AGG - chr5_1:61231827-61231846 None:intergenic 35.0%
TGTGTACGAGGTAGATAAAT+GGG + chr5_1:61232140-61232159 Msa0741510:intron 35.0%
!! GATAGTACTTTGGTTGGTAA+AGG + chr5_1:61232284-61232303 Msa0741510:intron 35.0%
TGTTCTGTTGTGATTATTGC+TGG + chr5_1:61232337-61232356 Msa0741510:intron 35.0%
GTTCTGTTGTGATTATTGCT+GGG + chr5_1:61232338-61232357 Msa0741510:intron 35.0%
CATAACTGGTTACCTATGTT+TGG - chr5_1:61232453-61232472 None:intergenic 35.0%
GTAATAGCTAAAGCAAACAC+AGG - chr5_1:61232638-61232657 None:intergenic 35.0%
! TTCCATCTTTTTGGACATAG+GGG + chr5_1:61232670-61232689 Msa0741510:intron 35.0%
CCATAGTTCTTAATCTTGGT+AGG - chr5_1:61232736-61232755 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + chr5_1:61232733-61232752 Msa0741510:CDS 35.0%
TACCGTGATACTACTCTAAA+CGG + chr5_1:61232808-61232827 Msa0741510:CDS 35.0%
TAATCTTCTTGTACACCAGA+GGG - chr5_1:61232978-61232997 None:intergenic 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG - chr5_1:61233017-61233036 None:intergenic 35.0%
CTGAATCACATAAACAGGTT+GGG - chr5_1:61233045-61233064 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG - chr5_1:61233046-61233065 None:intergenic 35.0%
TCACATTTCGCTTCTCATAT+TGG + chr5_1:61233069-61233088 Msa0741510:three_prime_UTR 35.0%
CACATTTCGCTTCTCATATT+GGG + chr5_1:61233070-61233089 Msa0741510:three_prime_UTR 35.0%
! TAGCGATCACTTTATTTCGA+AGG + chr5_1:61233284-61233303 Msa0741510:three_prime_UTR 35.0%
! GATCACTTTATTTCGAAGGA+GGG + chr5_1:61233288-61233307 Msa0741510:three_prime_UTR 35.0%
ACTCTTATTGCTGGGAAAAA+AGG + chr5_1:61233335-61233354 Msa0741510:three_prime_UTR 35.0%
TTATTGCTGGGAAAAAAGGA+AGG + chr5_1:61233339-61233358 Msa0741510:three_prime_UTR 35.0%
! CTTGGGATGTTCATCCTTTT+CGG - chr5_1:61231092-61231111 None:intergenic 40.0%
TTCGTGCCAAATCCAAATTC+TGG + chr5_1:61231146-61231165 Msa0741510:CDS 40.0%
TACTTGCATAAGCGCTTATG+AGG + chr5_1:61231440-61231459 Msa0741510:intron 40.0%
!!! AGCTGTTTTAAGGGACTGTT+TGG - chr5_1:61231581-61231600 None:intergenic 40.0%
! GAGTATAATTTTGCACCCTG+TGG + chr5_1:61231643-61231662 Msa0741510:intron 40.0%
ATAACTTTCTCCTCTCCACA+GGG - chr5_1:61231661-61231680 None:intergenic 40.0%
AATAACTTTCTCCTCTCCAC+AGG - chr5_1:61231662-61231681 None:intergenic 40.0%
TGTGTCTCTCTCATAAATGG+AGG - chr5_1:61231789-61231808 None:intergenic 40.0%
TGGACCCTCTAATGATATTC+TGG + chr5_1:61231819-61231838 Msa0741510:intron 40.0%
AGAGCCAACTTGAACTCATT+TGG + chr5_1:61231880-61231899 Msa0741510:intron 40.0%
!! ATTTGGCGGGGATTTGATTT+TGG + chr5_1:61231897-61231916 Msa0741510:intron 40.0%
!! TTTGGCGGGGATTTGATTTT+GGG + chr5_1:61231898-61231917 Msa0741510:intron 40.0%
TGTAACCTTTCCCTAAGTCA+TGG + chr5_1:61232106-61232125 Msa0741510:intron 40.0%
CTAGATTCCACCATGACTTA+GGG - chr5_1:61232119-61232138 None:intergenic 40.0%
GTGTGTACGAGGTAGATAAA+TGG + chr5_1:61232139-61232158 Msa0741510:intron 40.0%
!! TACTTTGGTTGGTAAAGGGA+AGG + chr5_1:61232289-61232308 Msa0741510:intron 40.0%
TGTGAGAGAATTCTTGGAGT+AGG + chr5_1:61232607-61232626 Msa0741510:intron 40.0%
AACCCCTATGTCCAAAAAGA+TGG - chr5_1:61232675-61232694 None:intergenic 40.0%
TTCCAAAATCAAGTTCCCTC+TGG + chr5_1:61232960-61232979 Msa0741510:CDS 40.0%
CTAATCTTCTTGTACACCAG+AGG - chr5_1:61232979-61232998 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG + chr5_1:61232977-61232996 Msa0741510:CDS 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG - chr5_1:61233006-61233025 None:intergenic 40.0%
ATTCTCGGTAAGCAACAACT+AGG - chr5_1:61233189-61233208 None:intergenic 40.0%
! CGATCACTTTATTTCGAAGG+AGG + chr5_1:61233287-61233306 Msa0741510:three_prime_UTR 40.0%
TGTTTGTGCACTCTTATTGC+TGG + chr5_1:61233326-61233345 Msa0741510:three_prime_UTR 40.0%
GTTTGTGCACTCTTATTGCT+GGG + chr5_1:61233327-61233346 Msa0741510:three_prime_UTR 40.0%
ATGCTCATAGCTAATGAGCT+AGG + chr5_1:61233371-61233390 Msa0741510:three_prime_UTR 40.0%
! ATGAGCTAGGTTTTGCGAAA+TGG + chr5_1:61233384-61233403 Msa0741510:three_prime_UTR 40.0%
! TGAGCTAGGTTTTGCGAAAT+GGG + chr5_1:61233385-61233404 Msa0741510:three_prime_UTR 40.0%
TGGGAAGAACAAAGTTGTGT+TGG + chr5_1:61233404-61233423 Msa0741510:three_prime_UTR 40.0%
GAAACAGTTTCACCAGTACC+AGG + chr5_1:61231045-61231064 Msa0741510:intron 45.0%
TTTCACCAGTACCAGGTTGT+TGG + chr5_1:61231052-61231071 Msa0741510:CDS 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - chr5_1:61231088-61231107 None:intergenic 45.0%
ACAGTCCCTTAAAACAGCTG+TGG + chr5_1:61231582-61231601 Msa0741510:intron 45.0%
! TAATTTTGCACCCTGTGGAG+AGG + chr5_1:61231648-61231667 Msa0741510:intron 45.0%
ATGCGTAGAGAGACTCTCTT+CGG + chr5_1:61231735-61231754 Msa0741510:intron 45.0%
GAGAGACACAAACGATAGAG+TGG + chr5_1:61231799-61231818 Msa0741510:intron 45.0%
GCCAACTTGAACTCATTTGG+CGG + chr5_1:61231883-61231902 Msa0741510:intron 45.0%
CCAACTTGAACTCATTTGGC+GGG + chr5_1:61231884-61231903 Msa0741510:intron 45.0%
CAACTTGAACTCATTTGGCG+GGG + chr5_1:61231885-61231904 Msa0741510:intron 45.0%
AACCTTTCCCTAAGTCATGG+TGG + chr5_1:61232109-61232128 Msa0741510:intron 45.0%
TTCCACCATGACTTAGGGAA+AGG - chr5_1:61232114-61232133 None:intergenic 45.0%
CCTAGATTCCACCATGACTT+AGG - chr5_1:61232120-61232139 None:intergenic 45.0%
! CCTAAGTCATGGTGGAATCT+AGG + chr5_1:61232117-61232136 Msa0741510:intron 45.0%
TGTTGCTCCGATTGCAAGTA+GGG + chr5_1:61232312-61232331 Msa0741510:intron 45.0%
GAACAAGCCCTACTTGCAAT+CGG - chr5_1:61232322-61232341 None:intergenic 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + chr5_1:61232763-61232782 Msa0741510:CDS 45.0%
! CGCCGTTTAGAGTAGTATCA+CGG - chr5_1:61232813-61232832 None:intergenic 45.0%
GGAGACAATGTACAACGAGA+TGG + chr5_1:61232837-61232856 Msa0741510:CDS 45.0%
! TCCCTTTTGCACAGATTAGC+CGG - chr5_1:61232919-61232938 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG - chr5_1:61232965-61232984 None:intergenic 45.0%
AGAAGATTAGGCCACCAACT+AGG + chr5_1:61232989-61233008 Msa0741510:CDS 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG - chr5_1:61233003-61233022 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG - chr5_1:61233037-61233056 None:intergenic 45.0%
GCTCATTAGCTATGAGCATC+TGG - chr5_1:61233370-61233389 None:intergenic 45.0%
CTCTTCCAACAACCTGGTAC+TGG - chr5_1:61231060-61231079 None:intergenic 50.0%
! GAAGTGCTCTTCCAACAACC+TGG - chr5_1:61231066-61231085 None:intergenic 50.0%
!! AAGAGCACTTCCCACCGAAA+AGG + chr5_1:61231075-61231094 Msa0741510:CDS 50.0%
! GGGATGTTCATCCTTTTCGG+TGG - chr5_1:61231089-61231108 None:intergenic 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG + chr5_1:61231123-61231142 Msa0741510:CDS 50.0%
GGATTTGGCACGAACCTCAT+TGG - chr5_1:61231140-61231159 None:intergenic 50.0%
CCCGCCAAATGAGTTCAAGT+TGG - chr5_1:61231887-61231906 None:intergenic 50.0%
GTGGAATCTAGGTGTGTACG+AGG + chr5_1:61232128-61232147 Msa0741510:intron 50.0%
! GTGTTGCTCCGATTGCAAGT+AGG + chr5_1:61232311-61232330 Msa0741510:intron 50.0%
TACTACTCTAAACGGCGCTG+TGG + chr5_1:61232816-61232835 Msa0741510:CDS 50.0%
ACGAGATGGCATCTCGTCAT+AGG + chr5_1:61232851-61232870 Msa0741510:CDS 50.0%
CGAGATGGCATCTCGTCATA+GGG + chr5_1:61232852-61232871 Msa0741510:CDS 50.0%
CATTAAGACTGCCACCATCC+CGG + chr5_1:61232897-61232916 Msa0741510:CDS 50.0%
! TTTGCACAGATTAGCCGGGA+TGG - chr5_1:61232914-61232933 None:intergenic 50.0%
TCCCGGCTAATCTGTGCAAA+AGG + chr5_1:61232914-61232933 Msa0741510:CDS 50.0%
!! CCCTTTTGCACAGATTAGCC+GGG - chr5_1:61232918-61232937 None:intergenic 50.0%
CCCGGCTAATCTGTGCAAAA+GGG + chr5_1:61232915-61232934 Msa0741510:CDS 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG - chr5_1:61233028-61233047 None:intergenic 50.0%
TGGCATCTCGTCATAGGGTC+AGG + chr5_1:61232857-61232876 Msa0741510:CDS 55.0%
! GCACAGATTAGCCGGGATGG+TGG - chr5_1:61232911-61232930 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61230934 61233431 61230934 ID=Msa0741510;Name=Msa0741510
chr5_1 mRNA 61230934 61233431 61230934 ID=Msa0741510-mRNA-1;Parent=Msa0741510;Name=Msa0741510-mRNA-1;_AED=0.38;_eAED=0.38;_QI=8|1|1|1|1|1|4|372|178
chr5_1 exon 61230934 61230956 61230934 ID=Msa0741510-mRNA-1:exon:17704;Parent=Msa0741510-mRNA-1
chr5_1 exon 61231052 61231167 61231052 ID=Msa0741510-mRNA-1:exon:17705;Parent=Msa0741510-mRNA-1
chr5_1 exon 61231256 61231319 61231256 ID=Msa0741510-mRNA-1:exon:17706;Parent=Msa0741510-mRNA-1
chr5_1 exon 61232718 61233431 61232718 ID=Msa0741510-mRNA-1:exon:17707;Parent=Msa0741510-mRNA-1
chr5_1 five_prime_UTR 61230934 61230941 61230934 ID=Msa0741510-mRNA-1:five_prime_utr;Parent=Msa0741510-mRNA-1
chr5_1 CDS 61230942 61230956 61230942 ID=Msa0741510-mRNA-1:cds;Parent=Msa0741510-mRNA-1
chr5_1 CDS 61231052 61231167 61231052 ID=Msa0741510-mRNA-1:cds;Parent=Msa0741510-mRNA-1
chr5_1 CDS 61231256 61231319 61231256 ID=Msa0741510-mRNA-1:cds;Parent=Msa0741510-mRNA-1
chr5_1 CDS 61232718 61233059 61232718 ID=Msa0741510-mRNA-1:cds;Parent=Msa0741510-mRNA-1
chr5_1 three_prime_UTR 61233060 61233431 61233060 ID=Msa0741510-mRNA-1:three_prime_utr;Parent=Msa0741510-mRNA-1
Gene Sequence

>Msa0741510

ATGGTTAACGCTAAGTTTCACCAGTACCAGGTTGTTGGAAGAGCACTTCCCACCGAAAAGGATGAACATCCCAAGATTTATCGCATGAAGCTTTGGGCAACCAATGAGGTTCGTGCCAAATCCAAATTCTGGTATTTCTTGAGGAAGTTGAAGAAGGTTAAGAAAAGTAATGGACAAGTTTTGGCTATCAATGAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGCGCTGTGGAGACAATGTACAACGAGATGGCATCTCGTCATAGGGTCAGGTTTCCCTGCATTCAAATCATTAAGACTGCCACCATCCCGGCTAATCTGTGCAAAAGGGAGAGCACTAAGCAGTTTCACAATTCCAAAATCAAGTTCCCTCTGGTGTACAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACCTACAAAGCCAAGAAGCCCAACCTGTTTATGTGA
Protein sequence

>Msa0741510

MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM*