AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110350 MtrunA17_Chr8g0385411 91.803 61 5 0 1 61 188 248 2.78e-35 124
Msa0110350 MtrunA17_Chr3g0131401 63.333 60 22 0 2 61 210 269 5.98e-23 89.7
Msa0110350 MtrunA17_Chr1g0192121 66.667 60 20 0 2 61 177 236 4.53e-22 87.4
Msa0110350 MtrunA17_Chr7g0272591 61.667 60 23 0 2 61 190 249 5.49e-21 84.3
Msa0110350 MtrunA17_Chr8g0387591 58.333 60 25 0 2 61 227 286 1.36e-18 77.4
Msa0110350 MtrunA17_Chr3g0131361 48.333 60 31 0 2 61 184 243 4.43e-17 73.2
Msa0110350 MtrunA17_Chr2g0301511 49.180 61 30 1 2 61 216 276 1.22e-12 60.5
Msa0110350 MtrunA17_Chr3g0131381 48.077 52 27 0 2 53 186 237 3.64e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110350 AT5G51060.1 61.667 60 23 0 2 61 195 254 3.65e-21 85.1
Msa0110350 AT5G47910.1 56.667 60 26 0 2 61 222 281 1.79e-18 77.4
Msa0110350 AT5G07390.1 53.333 60 28 0 2 61 190 249 4.94e-18 76.3
Msa0110350 AT4G25090.1 48.333 60 31 0 2 61 145 204 3.24e-17 73.9
Msa0110350 AT4G25090.2 48.333 60 31 0 2 61 145 204 3.54e-17 73.9
Msa0110350 AT5G07390.2 54.386 57 26 0 2 58 190 246 4.69e-17 73.6
Msa0110350 AT1G09090.2 53.333 60 28 0 2 61 140 199 5.98e-16 70.1
Msa0110350 AT1G09090.1 53.333 60 28 0 2 61 140 199 9.87e-16 69.7
Msa0110350 AT1G64060.1 53.333 60 28 0 2 61 233 292 1.74e-15 68.9
Msa0110350 AT1G19230.2 50.000 60 30 0 2 61 237 296 8.13e-14 64.3
Msa0110350 AT1G19230.1 50.000 60 30 0 2 61 237 296 8.29e-14 64.3
Msa0110350 AT4G11230.1 53.333 60 27 1 2 61 224 282 1.25e-13 63.5
Msa0110350 AT3G45810.1 51.852 54 25 1 8 61 181 233 9.81e-13 61.2
Msa0110350 AT5G60010.1 50.000 54 26 1 8 61 171 223 5.64e-12 58.9

Find 293 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATATTGCACAAATTTAA+AGG 0.091637 1_3:-23170608 None:intergenic
TAAACAATTACTGAAATAAA+TGG 0.165186 1_3:+23169438 Msa0110350:five_prime_UTR
AATCCTCTTGACATGATTTC+TGG 0.188747 1_3:+23168678 Msa0110350:five_prime_UTR
GTTATGGGTGGTGGTGGTGG+TGG 0.196963 1_3:-23167806 None:intergenic
ATTTGCATCAAAACGGAAAT+AGG 0.215073 1_3:-23168544 None:intergenic
CTTGTTATTATGATGGGTTT+TGG 0.236999 1_3:-23167646 None:intergenic
ACACAATGTGAAATCATTAA+AGG 0.269615 1_3:+23167988 Msa0110350:five_prime_UTR
TTTGATGGATGAGATGTTAA+AGG 0.272209 1_3:-23167698 None:intergenic
GTGAAGATTAATATCAAAAC+TGG 0.276508 1_3:+23168939 Msa0110350:five_prime_UTR
AAGTCTCTCCAATGCATAAA+TGG 0.282846 1_3:-23171472 None:intergenic
CAGACCAAAGCTTTGATACT+AGG 0.290247 1_3:+23170253 Msa0110350:CDS
AATCCAATGCCAAAGATTTC+AGG 0.293364 1_3:+23169065 Msa0110350:five_prime_UTR
CTAGATTTCGGGGTGATAAA+TGG 0.295975 1_3:+23168996 Msa0110350:five_prime_UTR
AGATCCAGTTTAGGGAGTTC+TGG 0.296332 1_3:+23170220 Msa0110350:CDS
GCACAAATTTAAAGGCAAAT+AGG 0.296907 1_3:-23170600 None:intergenic
CCTTTAAATTTGTGCAATAT+AGG 0.299547 1_3:+23170608 Msa0110350:three_prime_UTR
CAGTGCGAAACCTAGATTTC+GGG 0.305625 1_3:+23168985 Msa0110350:five_prime_UTR
TCTAGGTTTCGCACTGATAA+TGG 0.306548 1_3:-23168978 None:intergenic
AATCTTGACGGCCGATTGTT+TGG 0.307017 1_3:-23168419 None:intergenic
GTTGAAGGGTTTAGGTAGTT+TGG 0.307613 1_3:-23171198 None:intergenic
TGTCTGGGATTGTGATGTTT+GGG 0.310552 1_3:-23167734 None:intergenic
AGAAGAGGATGATGGTTATT+TGG 0.316567 1_3:+23169193 Msa0110350:five_prime_UTR
CGATTAACAAGATCCAGTTT+AGG 0.323576 1_3:+23170211 Msa0110350:CDS
TATTATGTTATGTACTAATT+CGG 0.333763 1_3:+23171807 Msa0110350:three_prime_UTR
TTCACCACTCCTGAAATCTT+TGG 0.336330 1_3:-23169074 None:intergenic
ACAAAATGCCAGTAACTTGA+TGG 0.336352 1_3:-23171083 None:intergenic
GATTAACAAGATCCAGTTTA+GGG 0.337450 1_3:+23170212 Msa0110350:CDS
ACCGCGGCACGTGTCATATC+TGG 0.338162 1_3:+23168270 Msa0110350:five_prime_UTR
TTCCTTAGTCAAGTAAAGTT+TGG 0.338913 1_3:-23171300 None:intergenic
TACAATCCTTCTAACGGAAT+TGG 0.339439 1_3:+23168297 Msa0110350:five_prime_UTR
TTGGAGAAGGAGATAATGTT+TGG 0.339477 1_3:-23167610 None:intergenic
CATTTATCACCCCGAAATCT+AGG 0.339483 1_3:-23168995 None:intergenic
CTGTGGATTGGTGTCATGTT+AGG 0.345113 1_3:+23170577 Msa0110350:intron
TCACAGGTTTCAATGCCTTT+TGG 0.346810 1_3:+23171225 Msa0110350:three_prime_UTR
CACTGTGTGTGCATGGCAAA+AGG 0.347146 1_3:+23170659 Msa0110350:three_prime_UTR
TTAATTGCCAACACATTTCC+AGG 0.347300 1_3:-23171691 None:intergenic
GCTAAACCAATTCCGTTAGA+AGG 0.348673 1_3:-23168303 None:intergenic
AATTCTAATGGTTGTGCTAA+TGG 0.351045 1_3:+23171130 Msa0110350:three_prime_UTR
GAGGTTATGGGTGGTGGTGG+TGG 0.353426 1_3:-23167809 None:intergenic
AACACAAGTTTGGCTTTGTT+TGG 0.358095 1_3:+23168327 Msa0110350:five_prime_UTR
GTGTCTGGGATTGTGATGTT+TGG 0.362352 1_3:-23167735 None:intergenic
TTGCTTACTTGTTATTATGA+TGG 0.362595 1_3:-23167653 None:intergenic
CACTCTCACTCCCTCACTTT+CGG 0.362838 1_3:+23169832 Msa0110350:five_prime_UTR
GTGAGTTTGTTGAAGGGTTT+AGG 0.363562 1_3:-23171206 None:intergenic
TGGTTCCATGGATAATCAAC+AGG 0.364932 1_3:-23171280 None:intergenic
ATTCGGCCATGTATATGATA+TGG 0.369935 1_3:+23171824 Msa0110350:three_prime_UTR
GATACTCTTGCTCGGCAGAT+AGG 0.373480 1_3:+23170174 Msa0110350:CDS
TCAGTGCGAAACCTAGATTT+CGG 0.374050 1_3:+23168984 Msa0110350:five_prime_UTR
TTGTATGGAGAGGGTTGTTA+TGG 0.374199 1_3:+23169134 Msa0110350:five_prime_UTR
CAGAGTGAGAGGGAGAAGAA+AGG 0.375249 1_3:-23169656 None:intergenic
CCATCACTTGGCTCAGGAAT+AGG 0.375371 1_3:+23170741 Msa0110350:three_prime_UTR
CCTTTACACTGGCCAATACT+AGG 0.375742 1_3:+23171159 Msa0110350:three_prime_UTR
AAACAATTACTGAAATAAAT+GGG 0.375953 1_3:+23169439 Msa0110350:five_prime_UTR
TTGAAGGTGGCTGTTTATCC+TGG 0.376154 1_3:+23171673 Msa0110350:intron
GCGGCGGCGGCCAGTGGTGG+TGG 0.379766 1_3:-23169700 None:intergenic
AAATCTTGGGAAGGGGTAAC+AGG 0.380435 1_3:+23171107 Msa0110350:three_prime_UTR
GAGAGAAACCATCAAGTTAC+TGG 0.384717 1_3:+23171075 Msa0110350:three_prime_UTR
TGATTCTCCATCTTTGTTGA+AGG 0.385460 1_3:+23169943 Msa0110350:five_prime_UTR
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 1_3:+23169041 Msa0110350:five_prime_UTR
TTTGAGGTTATGGGTGGTGG+TGG 0.388850 1_3:-23167812 None:intergenic
CGGCGGCCAGTGGTGGTGGC+AGG 0.390053 1_3:-23169696 None:intergenic
TGAGCCAAGTGATGGTGTTT+CGG 0.392615 1_3:-23170733 None:intergenic
TGGTTTAGCCAACACAAGTT+TGG 0.393154 1_3:+23168317 Msa0110350:five_prime_UTR
GTTGTTTCACTCTCTATTGT+CGG 0.393975 1_3:+23169906 Msa0110350:five_prime_UTR
TGAGCCTAGTATCAAAGCTT+TGG 0.396068 1_3:-23170257 None:intergenic
TATACAACACTCTACCTTAC+CGG 0.396269 1_3:-23169501 None:intergenic
AGTCCCAGAACTCCCTAAAC+TGG 0.398261 1_3:-23170224 None:intergenic
TTTGTAGACTTGGATGTATC+TGG 0.404431 1_3:+23171437 Msa0110350:intron
AGAGTGAGAGGGAGAAGAAA+GGG 0.404714 1_3:-23169655 None:intergenic
TGTTAAACATAACGATGTTC+CGG 0.404869 1_3:+23168569 Msa0110350:five_prime_UTR
TTGAAACCAGAAAACACGTT+TGG 0.405859 1_3:-23168213 None:intergenic
TTGATGGATGAGATGTTAAA+GGG 0.406557 1_3:-23167697 None:intergenic
GGTGTAAGCTTGATTTCATA+AGG 0.411021 1_3:-23168384 None:intergenic
GCAAACAGGCAATAAGATAA+TGG 0.412713 1_3:-23170711 None:intergenic
GAGTGGGAACGACCGGTTAT+GGG 0.413274 1_3:-23169739 None:intergenic
TCCCATCACCATTTATGCAT+TGG 0.416748 1_3:+23171464 Msa0110350:three_prime_UTR
AAAATACCCATGCCACATAA+GGG 0.419152 1_3:-23169581 None:intergenic
AACCAAACTTTACTTGACTA+AGG 0.422801 1_3:+23171298 Msa0110350:three_prime_UTR
GATCCAGTTTAGGGAGTTCT+GGG 0.425992 1_3:+23170221 Msa0110350:CDS
TGCTTACTTGTTATTATGAT+GGG 0.425997 1_3:-23167652 None:intergenic
TCAAGTAAAGTTTGGTTCCA+TGG 0.429335 1_3:-23171292 None:intergenic
TGGAGAAGGAGATAATGTTT+GGG 0.432540 1_3:-23167609 None:intergenic
GGGAGTGATGATGGTGTTTG+TGG 0.434132 1_3:-23167838 None:intergenic
ACTCCTGAAATCTTTGGCAT+TGG 0.436531 1_3:-23169068 None:intergenic
GTGATGGTGTTTCGGCAAAC+AGG 0.438335 1_3:-23170725 None:intergenic
CGTGGAAGAAACTGTGGGTT+TGG 0.439102 1_3:-23168054 None:intergenic
CACTCACCTGCCACCACCAC+TGG 0.440610 1_3:+23169690 Msa0110350:five_prime_UTR
GGCAGGTGAGTGAGAGGCAG+AGG 0.441818 1_3:-23169679 None:intergenic
ACACTTCCACCGTCACTTAA+CGG 0.447215 1_3:+23168012 Msa0110350:five_prime_UTR
CCTAAAATTGACGGCGACAC+TGG 0.451020 1_3:+23168477 Msa0110350:five_prime_UTR
AAATTACCTTGTTAAAATTG+AGG 0.451368 1_3:-23170799 None:intergenic
AAACCATACGGCACCCTCCT+TGG 0.455270 1_3:-23169311 None:intergenic
AAAGTCTGTGCGAATATTGA+AGG 0.455530 1_3:+23171518 Msa0110350:three_prime_UTR
TGAAACCAGAAAACACGTTT+GGG 0.456713 1_3:-23168212 None:intergenic
ATTTCTGGTGGTTCTCCAGT+AGG 0.459625 1_3:+23168693 Msa0110350:five_prime_UTR
AACGGCGCTTACATAAGAAA+TGG 0.460728 1_3:+23168030 Msa0110350:five_prime_UTR
TAAACAGTGAAAACTCAATC+TGG 0.461795 1_3:+23169771 Msa0110350:five_prime_UTR
AGAGTGGGAACGACCGGTTA+TGG 0.462764 1_3:-23169740 None:intergenic
CCGATCCATCAAAAGTTTCA+AGG 0.463927 1_3:+23168718 Msa0110350:five_prime_UTR
TGCTCAATGGAGAGAACATT+CGG 0.468229 1_3:-23168873 None:intergenic
TAGTATACCACTCCCATAAC+CGG 0.468397 1_3:+23169727 Msa0110350:five_prime_UTR
ACTGTGTGTGCATGGCAAAA+GGG 0.469519 1_3:+23170660 Msa0110350:three_prime_UTR
TAACACCATTTGCATCAAAA+CGG 0.472715 1_3:-23168551 None:intergenic
CATGCCACATAAGGGGTGTA+TGG 0.473033 1_3:-23169573 None:intergenic
ATACTCTTGCTCGGCAGATA+GGG 0.478128 1_3:+23170175 Msa0110350:CDS
TATGGAGAGGGTTGTTATGG+TGG 0.479678 1_3:+23169137 Msa0110350:five_prime_UTR
GTGACGAGTCGAAGATGAAA+TGG 0.483688 1_3:+23168766 Msa0110350:five_prime_UTR
GAAGTTGGATGTAGGTTGTA+TGG 0.483755 1_3:+23169119 Msa0110350:five_prime_UTR
TTATGTGCATGATGAGAAGA+AGG 0.484903 1_3:+23169220 Msa0110350:five_prime_UTR
GTTTGCCGTTAAAATCTTGA+CGG 0.485908 1_3:-23168431 None:intergenic
CCTAGTATTGGCCAGTGTAA+AGG 0.486019 1_3:-23171159 None:intergenic
ATAGCTCTGGCAATAGCAAT+TGG 0.488164 1_3:+23170957 Msa0110350:three_prime_UTR
CCTCTTGACATGATTTCTGG+TGG 0.488783 1_3:+23168681 Msa0110350:five_prime_UTR
ATGAAATGGTTCGATGTGCC+AGG 0.489596 1_3:+23168780 Msa0110350:five_prime_UTR
GAGATCTAAGAGAGAGAAGA+GGG 0.490981 1_3:-23169633 None:intergenic
GATGCGGCGGCGGCCAGTGG+TGG 0.493327 1_3:-23169703 None:intergenic
GTCGCCGGAGTTTGAGATTG+TGG 0.494521 1_3:+23169274 Msa0110350:five_prime_UTR
ATTGTTTGGATATCACCGTT+TGG 0.495988 1_3:-23168405 None:intergenic
CACTGGCCAATACTAGGTTC+AGG 0.496070 1_3:+23171165 Msa0110350:three_prime_UTR
AACGGTGATATCCAAACAAT+CGG 0.496479 1_3:+23168408 Msa0110350:five_prime_UTR
GATCTCACCTTCAACAAAGA+TGG 0.496799 1_3:-23169950 None:intergenic
AAGGGAGGGATAGAAGTTGT+TGG 0.498248 1_3:-23167679 None:intergenic
AAAACACGTTTGGGATAAGT+TGG 0.498794 1_3:-23168203 None:intergenic
AAGATCTGCATATAAAGTGA+TGG 0.499099 1_3:+23170633 Msa0110350:three_prime_UTR
GGAGAGAGAGTGGGAACGAC+CGG 0.499704 1_3:-23169746 None:intergenic
TCCCTACGACACCGACAACT+TGG 0.500531 1_3:-23169366 None:intergenic
TCTCTCCATCGTATGCTCAA+TGG 0.500819 1_3:-23168886 None:intergenic
TTAATGATTTCACATTGTGT+TGG 0.501774 1_3:-23167985 None:intergenic
TTTGATGGATCGGAACCTAC+TGG 0.501938 1_3:-23168708 None:intergenic
TACAAAATCGAAAACGAAGC+TGG 0.505480 1_3:+23168177 Msa0110350:five_prime_UTR
AGATGGAGAATCAGCAATAG+AGG 0.505849 1_3:-23169933 None:intergenic
AGTAATGCTGGGAGTGATGA+TGG 0.506662 1_3:-23167847 None:intergenic
AAAGAATAGGTTTGTTTATG+CGG 0.507283 1_3:+23169034 Msa0110350:five_prime_UTR
CTCCAATGCATAAATGGTGA+TGG 0.507413 1_3:-23171466 None:intergenic
AAGGGAGGATGGTGAAGAAG+AGG 0.507917 1_3:+23169178 Msa0110350:five_prime_UTR
GGTCTTGTCATGGAGAAAAC+CGG 0.510037 1_3:-23168588 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 1_3:+23169042 Msa0110350:five_prime_UTR
ACTGCTCATCCTAAAATTGA+CGG 0.512038 1_3:+23168468 Msa0110350:five_prime_UTR
AGTGTTGTATATTTAACCGT+TGG 0.513090 1_3:+23169513 Msa0110350:five_prime_UTR
ATGATTTCACATTGTGTTGG+AGG 0.513822 1_3:-23167982 None:intergenic
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 1_3:+23169280 Msa0110350:five_prime_UTR
GCTCGGCAGATAGGGATTCA+AGG 0.516505 1_3:+23170183 Msa0110350:CDS
AGAGGCAGAGGCAGAGTGAG+AGG 0.517772 1_3:-23169667 None:intergenic
TGGATGAGATGTTAAAGGGA+GGG 0.519687 1_3:-23167693 None:intergenic
CACCAAGTTGTCGGTGTCGT+AGG 0.521647 1_3:+23169364 Msa0110350:five_prime_UTR
CACGCCATTACAATCTCAAA+CGG 0.522637 1_3:+23168114 Msa0110350:five_prime_UTR
TGGAAGAATCACCGAGGAAG+AGG 0.522909 1_3:+23170399 Msa0110350:CDS
AGGAAGAGGTAAAAGATGTA+TGG 0.524125 1_3:+23170413 Msa0110350:CDS
AGGAACAAAAGCACCTAGCT+TGG 0.524887 1_3:-23170765 None:intergenic
GCGAAATCATGAAGAAAAGA+AGG 0.525570 1_3:-23168609 None:intergenic
GGAACGACCGGTTATGGGAG+TGG 0.526874 1_3:-23169734 None:intergenic
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 1_3:+23169365 Msa0110350:five_prime_UTR
AGATCTGCATATAAAGTGAT+GGG 0.531658 1_3:+23170634 Msa0110350:three_prime_UTR
CCATCAAAAGTTTCAAGGAT+CGG 0.531863 1_3:+23168723 Msa0110350:five_prime_UTR
ACTGTGAGAGTGGGAGGAGA+AGG 0.535318 1_3:-23169794 None:intergenic
GAAACCTGTGAGTTTGTTGA+AGG 0.536478 1_3:-23171213 None:intergenic
GGTGATGGATGCGAAGTCGC+CGG 0.538159 1_3:+23169259 Msa0110350:five_prime_UTR
AACTTTACTTGACTAAGGAA+TGG 0.538178 1_3:+23171303 Msa0110350:three_prime_UTR
ATTCCTCCTGAACCTAGTAT+TGG 0.538799 1_3:-23171171 None:intergenic
CTCAGGAATAGGACCAAGCT+AGG 0.539998 1_3:+23170752 Msa0110350:three_prime_UTR
GTGAAAGATTGGGGAAATTG+TGG 0.543033 1_3:-23167579 None:intergenic
GGAGATCTAAGAGAGAGAAG+AGG 0.543617 1_3:-23169634 None:intergenic
TGATTTCACATTGTGTTGGA+GGG 0.543631 1_3:-23167981 None:intergenic
GTGTTGGAGGGAGTTCGTCT+AGG 0.545453 1_3:-23167969 None:intergenic
CTGTGTGTGCATGGCAAAAG+GGG 0.545633 1_3:+23170661 Msa0110350:three_prime_UTR
ATTAAATACTATTTGCTCTG+TGG 0.546400 1_3:+23170532 Msa0110350:three_prime_UTR
CATACACCCCTTATGTGGCA+TGG 0.546542 1_3:+23169574 Msa0110350:five_prime_UTR
GGTTATGGGAGTGGTATACT+AGG 0.547660 1_3:-23169725 None:intergenic
GAAATCAAGCTTACACCAAA+CGG 0.548084 1_3:+23168390 Msa0110350:five_prime_UTR
TGGAAGAGTGGTATGGAGAA+GGG 0.549448 1_3:-23169553 None:intergenic
TAGGATGCGGCGGCGGCCAG+TGG 0.549800 1_3:-23169706 None:intergenic
GTGTTTACGGATATTCAGCT+TGG 0.550330 1_3:+23168651 Msa0110350:five_prime_UTR
ATTTGTAAGTTTGAACGTAA+CGG 0.551232 1_3:-23168155 None:intergenic
TAAGGAATGGAACCATAAAA+CGG 0.553885 1_3:+23171316 Msa0110350:three_prime_UTR
TCCAATGCATAAATGGTGAT+GGG 0.555776 1_3:-23171465 None:intergenic
GTGATAAATGGTGATTACAT+GGG 0.557337 1_3:+23169008 Msa0110350:five_prime_UTR
TCTACCTTACCGGATATAAG+TGG 0.557413 1_3:-23169491 None:intergenic
TCTTCCATACACCCCTTATG+TGG 0.557932 1_3:+23169569 Msa0110350:five_prime_UTR
GTCTGGGATTGTGATGTTTG+GGG 0.559818 1_3:-23167733 None:intergenic
GGAGGGAGTTCGTCTAGGAC+TGG 0.561664 1_3:-23167964 None:intergenic
TAAGCTTGATTTCATAAGGA+AGG 0.561782 1_3:-23168380 None:intergenic
CACGCGATCAATGCGTGTGA+TGG 0.562716 1_3:+23168816 Msa0110350:five_prime_UTR
ACTGTTTAAGGGAGAGAGAG+TGG 0.562761 1_3:-23169756 None:intergenic
ATGGATGAGATGTTAAAGGG+AGG 0.562849 1_3:-23167694 None:intergenic
ACGGCCGACGACTGTGAGAG+TGG 0.564111 1_3:-23169804 None:intergenic
ACGCGATCAATGCGTGTGAT+GGG 0.564435 1_3:+23168817 Msa0110350:five_prime_UTR
TACCACCTCTTCGACGGTGA+TGG 0.565615 1_3:+23168084 Msa0110350:five_prime_UTR
GGATGTAGGTTGTATGGAGA+GGG 0.565942 1_3:+23169125 Msa0110350:five_prime_UTR
GGGTGTATGGAAGAGTGGTA+TGG 0.569311 1_3:-23169560 None:intergenic
ACATGTCTTGGATCTACAGA+TGG 0.569645 1_3:-23167922 None:intergenic
ATTAATATGTCAAAGCCTCA+AGG 0.569847 1_3:+23171709 Msa0110350:three_prime_UTR
GGAGGGATAGAAGTTGTTGG+TGG 0.570969 1_3:-23167676 None:intergenic
TGCCATCACCGTCGAAGAGG+TGG 0.571502 1_3:-23168086 None:intergenic
ATACACCCCTTATGTGGCAT+GGG 0.571567 1_3:+23169575 Msa0110350:five_prime_UTR
GAGTGACATCACCAAGTTGT+CGG 0.571610 1_3:+23169355 Msa0110350:five_prime_UTR
TGGATGTAGGTTGTATGGAG+AGG 0.572621 1_3:+23169124 Msa0110350:five_prime_UTR
TCACCGTCGAAGAGGTGGTA+AGG 0.575068 1_3:-23168081 None:intergenic
GGTGATAAATGGTGATTACA+TGG 0.575102 1_3:+23169007 Msa0110350:five_prime_UTR
TCCGCCACAATCTCAAACTC+CGG 0.575111 1_3:-23169278 None:intergenic
CTTATAGCTTCTGCTGCACG+TGG 0.575305 1_3:+23168240 Msa0110350:five_prime_UTR
AGGATGAGCAGTCATACTCA+TGG 0.575328 1_3:-23168457 None:intergenic
AACGTAACGGCTACAGAGTG+TGG 0.575577 1_3:-23168142 None:intergenic
GAAACACCATCACTTGGCTC+AGG 0.576141 1_3:+23170735 Msa0110350:three_prime_UTR
GCGTGCATGATATTAAATCC+TGG 0.576415 1_3:-23168798 None:intergenic
ATGGAAGAGTGGTATGGAGA+AGG 0.576479 1_3:-23169554 None:intergenic
AGGATTGAATGAAGAGTCAA+AGG 0.577878 1_3:+23170131 Msa0110350:intron
TATGTGCATGATGAGAAGAA+GGG 0.578787 1_3:+23169221 Msa0110350:five_prime_UTR
AAGAAAAGAAGGTCTTGTCA+TGG 0.578816 1_3:-23168598 None:intergenic
AGGGGTAACAGGAATTCTAA+TGG 0.579371 1_3:+23171118 Msa0110350:three_prime_UTR
AAACAAAGCCAAACTTGTGT+TGG 0.580683 1_3:-23168325 None:intergenic
AATAATCCATGAAAACCATA+CGG 0.583712 1_3:-23169323 None:intergenic
TGTTTATCCTGGAAATGTGT+TGG 0.584274 1_3:+23171684 Msa0110350:three_prime_UTR
ATGTAAGCGCCGTTAAGTGA+CGG 0.584811 1_3:-23168021 None:intergenic
AAACCCTTCAACAAACTCAC+AGG 0.585965 1_3:+23171209 Msa0110350:three_prime_UTR
CTGTTTAAGGGAGAGAGAGT+GGG 0.586061 1_3:-23169755 None:intergenic
AAGGTGAGGAAGTTGGATGT+AGG 0.586152 1_3:+23169111 Msa0110350:five_prime_UTR
TATGACACGTGCCGCGGTGA+CGG 0.586484 1_3:-23168265 None:intergenic
AACAATTACTGAAATAAATG+GGG 0.586858 1_3:+23169440 Msa0110350:five_prime_UTR
TTTGCCGAAACACCATCACT+TGG 0.589013 1_3:+23170729 Msa0110350:three_prime_UTR
AATGTGTTGAGTAGTAATGC+TGG 0.590033 1_3:-23167859 None:intergenic
CCACCAGAAATCATGTCAAG+AGG 0.590568 1_3:-23168681 None:intergenic
AGTTAGCCATATCATATACA+TGG 0.591734 1_3:-23171830 None:intergenic
GATGGTGAAGAAGAGGATGA+TGG 0.592671 1_3:+23169185 Msa0110350:five_prime_UTR
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 1_3:+23169297 Msa0110350:five_prime_UTR
CCTATTCCTGAGCCAAGTGA+TGG 0.595115 1_3:-23170741 None:intergenic
CTGGCAATAGCAATTGGTGT+TGG 0.597010 1_3:+23170963 Msa0110350:three_prime_UTR
GGAGAAGGAGATAATGTTTG+GGG 0.599212 1_3:-23167608 None:intergenic
TATGCCCTGTTGATTATCCA+TGG 0.599483 1_3:+23171275 Msa0110350:three_prime_UTR
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 1_3:+23169298 Msa0110350:five_prime_UTR
GGACAATACAATCCTTCTAA+CGG 0.602074 1_3:+23168291 Msa0110350:five_prime_UTR
GAGGTGATGAGAATACCAAA+AGG 0.602190 1_3:-23171240 None:intergenic
GGTGGTGGCAGGTGAGTGAG+AGG 0.602844 1_3:-23169685 None:intergenic
GGTATACTAGGATGCGGCGG+CGG 0.604475 1_3:-23169713 None:intergenic
TTGCCAAGGAGGGTGCCGTA+TGG 0.604907 1_3:+23169308 Msa0110350:five_prime_UTR
CAAGGATTTAGCTATAAGAG+TGG 0.606086 1_3:+23171727 Msa0110350:three_prime_UTR
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 1_3:+23169231 Msa0110350:five_prime_UTR
AGGGTTGACAAAGATGCAGA+TGG 0.609513 1_3:+23170379 Msa0110350:intron
GGGCATACACAATGATGAAG+AGG 0.609765 1_3:-23171259 None:intergenic
GTGTTGAAAGGTGAGGAAGT+TGG 0.610000 1_3:+23169104 Msa0110350:five_prime_UTR
GGGAGTGGTATACTAGGATG+CGG 0.611770 1_3:-23169719 None:intergenic
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 1_3:+23169294 Msa0110350:five_prime_UTR
AGGGAGTGAGAGTGATCTGA+CGG 0.613543 1_3:-23169823 None:intergenic
GGGGTTGTAGTGAAAGATTG+GGG 0.614146 1_3:-23167588 None:intergenic
ATAAGGGGTGTATGGAAGAG+TGG 0.614419 1_3:-23169565 None:intergenic
GAGAGTGAAACAACAACGAG+TGG 0.618468 1_3:-23169897 None:intergenic
ATTTACTCATATCATCTACA+TGG 0.620876 1_3:-23171886 None:intergenic
GTGAAGATAGATGTGTTGAA+AGG 0.624379 1_3:+23169092 Msa0110350:five_prime_UTR
GGTCCACGTGGAAGAAACTG+TGG 0.628559 1_3:-23168060 None:intergenic
TCGGTGTCGTAGGGAAGACA+TGG 0.628582 1_3:+23169374 Msa0110350:five_prime_UTR
TCCAGATATGACACGTGCCG+CGG 0.630149 1_3:-23168271 None:intergenic
AAATACCCATGCCACATAAG+GGG 0.631006 1_3:-23169580 None:intergenic
CGGCCGACGACTGTGAGAGT+GGG 0.631495 1_3:-23169803 None:intergenic
GCATGCCATCACCGTCGAAG+AGG 0.632272 1_3:-23168089 None:intergenic
CTCTTATAGCTAAATCCTTG+AGG 0.633436 1_3:-23171724 None:intergenic
AAATTGAGGCCATCATCGAA+AGG 0.636223 1_3:-23170785 None:intergenic
GATAGATGTGTTGAAAGGTG+AGG 0.636429 1_3:+23169097 Msa0110350:five_prime_UTR
CCGACGACTGTGAGAGTGGG+AGG 0.636823 1_3:-23169800 None:intergenic
GAGGCAGAGGCAGAGTGAGA+GGG 0.639013 1_3:-23169666 None:intergenic
TTGCTTGCATGAAGAATGCG+AGG 0.639037 1_3:-23171020 None:intergenic
GTGAAACAACAACGAGTGGG+AGG 0.642679 1_3:-23169893 None:intergenic
AAACCTGTGAGTTTGTTGAA+GGG 0.643367 1_3:-23171212 None:intergenic
GATCATGGTGTTGTTGGAGA+AGG 0.644609 1_3:-23167623 None:intergenic
GGACCTTACCACCTCTTCGA+CGG 0.645380 1_3:+23168078 Msa0110350:five_prime_UTR
GTGTGATGGGGAAGATGATG+AGG 0.645598 1_3:+23168830 Msa0110350:five_prime_UTR
AAAATGAGGACCGAAAGTGA+GGG 0.646898 1_3:-23169842 None:intergenic
AATGCCAAAGATTTCAGGAG+TGG 0.648962 1_3:+23169070 Msa0110350:five_prime_UTR
AACCCACAGTTTCTTCCACG+TGG 0.651198 1_3:+23168057 Msa0110350:five_prime_UTR
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 1_3:+23169277 Msa0110350:five_prime_UTR
CCTCCCACTCTCACAGTCGT+CGG 0.654037 1_3:+23169800 Msa0110350:five_prime_UTR
ATCTGCATATAAAGTGATGG+GGG 0.654161 1_3:+23170636 Msa0110350:three_prime_UTR
CGCGATCAATGCGTGTGATG+GGG 0.655672 1_3:+23168818 Msa0110350:five_prime_UTR
TGATAAATGGTGATTACATG+GGG 0.658268 1_3:+23169009 Msa0110350:five_prime_UTR
TGAAACACTTAAATTGAACA+TGG 0.659896 1_3:+23170688 Msa0110350:three_prime_UTR
GATCTGCATATAAAGTGATG+GGG 0.661813 1_3:+23170635 Msa0110350:three_prime_UTR
TGAAGATTAATATCAAAACT+GGG 0.668404 1_3:+23168940 Msa0110350:five_prime_UTR
AGTGCGAAACCTAGATTTCG+GGG 0.669036 1_3:+23168986 Msa0110350:five_prime_UTR
AGAGTGAAACAACAACGAGT+GGG 0.673738 1_3:-23169896 None:intergenic
TGGCCAATACTAGGTTCAGG+AGG 0.678224 1_3:+23171168 Msa0110350:three_prime_UTR
AATGGCAATAGCCTTTACAC+TGG 0.678535 1_3:+23171148 Msa0110350:three_prime_UTR
GAGAAGGAGATAATGTTTGG+GGG 0.680307 1_3:-23167607 None:intergenic
ATGTGTTGAGTAGTAATGCT+GGG 0.681095 1_3:-23167858 None:intergenic
GTCCACGTGGAAGAAACTGT+GGG 0.688234 1_3:-23168059 None:intergenic
TACTCATATCATCTACATGG+TGG 0.691787 1_3:-23171883 None:intergenic
TCTCTCCATTGAGCATACGA+TGG 0.695768 1_3:+23168881 Msa0110350:five_prime_UTR
TAAGCGCCGTTAAGTGACGG+TGG 0.696353 1_3:-23168018 None:intergenic
ATGGTGGCATAGGACCGTAA+CGG 0.707951 1_3:-23168515 None:intergenic
GGTTCCATGGATAATCAACA+GGG 0.719137 1_3:-23171279 None:intergenic
AGTGGTATACTAGGATGCGG+CGG 0.727098 1_3:-23169716 None:intergenic
GACTCGTCACTAGCATAACG+AGG 0.742544 1_3:-23168753 None:intergenic
AAGAGGTGGTAAGGTCCACG+TGG 0.744047 1_3:-23168072 None:intergenic
CGGCAGATAGGGATTCAAGG+AGG 0.752863 1_3:+23170186 Msa0110350:CDS
TGCAGATGGAAGAATCACCG+AGG 0.763636 1_3:+23170393 Msa0110350:CDS
TGCACGTGGCTCCGTCACCG+CGG 0.771494 1_3:+23168254 Msa0110350:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATTATTTTTGTTTATA+CGG + chr1_3:23169415-23169434 Msa0110350:five_prime_UTR 10.0%
!! TAAACAATTACTGAAATAAA+TGG + chr1_3:23169438-23169457 Msa0110350:five_prime_UTR 15.0%
!! AAACAATTACTGAAATAAAT+GGG + chr1_3:23169439-23169458 Msa0110350:five_prime_UTR 15.0%
!! ATAAAAATATTCCAAAGTAA+GGG - chr1_3:23171359-23171378 None:intergenic 15.0%
!! TATAAAAATATTCCAAAGTA+AGG - chr1_3:23171360-23171379 None:intergenic 15.0%
!! TAAACAAATTACTTACTATA+TGG + chr1_3:23171558-23171577 Msa0110350:intron 15.0%
!! TATTATGTTATGTACTAATT+CGG + chr1_3:23171807-23171826 Msa0110350:three_prime_UTR 15.0%
!! TGAAGATTAATATCAAAACT+GGG + chr1_3:23168940-23168959 Msa0110350:five_prime_UTR 20.0%
!! AACAATTACTGAAATAAATG+GGG + chr1_3:23169440-23169459 Msa0110350:five_prime_UTR 20.0%
!!! TATAATTTTCCACTTATATC+CGG + chr1_3:23169482-23169501 Msa0110350:five_prime_UTR 20.0%
!!! AAATTTTTCCTTCAATTTGT+GGG + chr1_3:23169979-23169998 Msa0110350:intron 20.0%
!! AAATTACCTTGTTAAAATTG+AGG - chr1_3:23170802-23170821 None:intergenic 20.0%
!!! TATCATTTTAAGGCATTTTA+AGG - chr1_3:23171937-23171956 None:intergenic 20.0%
!!! TTGTTATTATGATGGGTTTT+GGG - chr1_3:23167648-23167667 None:intergenic 25.0%
!!! TGCTTACTTGTTATTATGAT+GGG - chr1_3:23167655-23167674 None:intergenic 25.0%
!!! TTGCTTACTTGTTATTATGA+TGG - chr1_3:23167656-23167675 None:intergenic 25.0%
! TTAATGATTTCACATTGTGT+TGG - chr1_3:23167988-23168007 None:intergenic 25.0%
! ACACAATGTGAAATCATTAA+AGG + chr1_3:23167988-23168007 Msa0110350:five_prime_UTR 25.0%
! ATTTGTAAGTTTGAACGTAA+CGG - chr1_3:23168158-23168177 None:intergenic 25.0%
! AAACGGAAATAGGTTAAAAA+TGG - chr1_3:23168537-23168556 None:intergenic 25.0%
!! TAAAAAGTATGCTGTGTTTA+CGG + chr1_3:23168638-23168657 Msa0110350:five_prime_UTR 25.0%
! GTGAAGATTAATATCAAAAC+TGG + chr1_3:23168939-23168958 Msa0110350:five_prime_UTR 25.0%
!! AAAGAATAGGTTTGTTTATG+CGG + chr1_3:23169034-23169053 Msa0110350:five_prime_UTR 25.0%
! AATAATCCATGAAAACCATA+CGG - chr1_3:23169326-23169345 None:intergenic 25.0%
!!! TTTTCATGGATTATTTGTGA+AGG + chr1_3:23169331-23169350 Msa0110350:five_prime_UTR 25.0%
!! GTTTATGAATCTTTTTCCAA+CGG - chr1_3:23169532-23169551 None:intergenic 25.0%
!! ATTGAGTTTTCACTGTTTAA+GGG - chr1_3:23169770-23169789 None:intergenic 25.0%
! AGTTTCAGACAAAAAAAATG+AGG - chr1_3:23169859-23169878 None:intergenic 25.0%
!! CAAATTTTTCCTTCAATTTG+TGG + chr1_3:23169978-23169997 Msa0110350:intron 25.0%
! GTAATTTCTAAGTGTTTCTT+TGG + chr1_3:23170098-23170117 Msa0110350:intron 25.0%
!!! CAACATTGATTTTGATTACA+GGG + chr1_3:23170360-23170379 Msa0110350:intron 25.0%
! ATTAAATACTATTTGCTCTG+TGG + chr1_3:23170532-23170551 Msa0110350:three_prime_UTR 25.0%
! TTTAAATACTATTTGCTCTG+TGG + chr1_3:23170560-23170579 Msa0110350:intron 25.0%
! CCTATATTGCACAAATTTAA+AGG - chr1_3:23170611-23170630 None:intergenic 25.0%
! CCTTTAAATTTGTGCAATAT+AGG + chr1_3:23170608-23170627 Msa0110350:three_prime_UTR 25.0%
! TGAAACACTTAAATTGAACA+TGG + chr1_3:23170688-23170707 Msa0110350:three_prime_UTR 25.0%
! ATATGGTATGAAAATACACA+TGG + chr1_3:23171575-23171594 Msa0110350:intron 25.0%
! TGTTGAAATTACTTCTGTTA+AGG + chr1_3:23171601-23171620 Msa0110350:intron 25.0%
! CATTTCATTGTCAAATTTGA+AGG + chr1_3:23171657-23171676 Msa0110350:intron 25.0%
! ATTTACTCATATCATCTACA+TGG - chr1_3:23171889-23171908 None:intergenic 25.0%
!!! CTTGTTATTATGATGGGTTT+TGG - chr1_3:23167649-23167668 None:intergenic 30.0%
! TTGATGGATGAGATGTTAAA+GGG - chr1_3:23167700-23167719 None:intergenic 30.0%
! TTTGATGGATGAGATGTTAA+AGG - chr1_3:23167701-23167720 None:intergenic 30.0%
!!! TTGTGGTTTTTTGAGGTTAT+GGG - chr1_3:23167824-23167843 None:intergenic 30.0%
!!! TTTGTGGTTTTTTGAGGTTA+TGG - chr1_3:23167825-23167844 None:intergenic 30.0%
!!! TTTTGAGACAAAACATGTCT+TGG - chr1_3:23167937-23167956 None:intergenic 30.0%
!! TTTTCCGTTTGAGATTGTAA+TGG - chr1_3:23168121-23168140 None:intergenic 30.0%
! GGTAACAAACTTTTTGCTTT+AGG + chr1_3:23168348-23168367 Msa0110350:five_prime_UTR 30.0%
TAAGCTTGATTTCATAAGGA+AGG - chr1_3:23168383-23168402 None:intergenic 30.0%
ATTTGCATCAAAACGGAAAT+AGG - chr1_3:23168547-23168566 None:intergenic 30.0%
!! TATTTCCGTTTTGATGCAAA+TGG + chr1_3:23168546-23168565 Msa0110350:five_prime_UTR 30.0%
TAACACCATTTGCATCAAAA+CGG - chr1_3:23168554-23168573 None:intergenic 30.0%
TGTTAAACATAACGATGTTC+CGG + chr1_3:23168569-23168588 Msa0110350:five_prime_UTR 30.0%
!! CACAGCATACTTTTTAGTAA+TGG - chr1_3:23168634-23168653 None:intergenic 30.0%
GTGATAAATGGTGATTACAT+GGG + chr1_3:23169008-23169027 Msa0110350:five_prime_UTR 30.0%
TGATAAATGGTGATTACATG+GGG + chr1_3:23169009-23169028 Msa0110350:five_prime_UTR 30.0%
ATTACATGGGGAAAAAGAAT+AGG + chr1_3:23169021-23169040 Msa0110350:five_prime_UTR 30.0%
AGTGTTGTATATTTAACCGT+TGG + chr1_3:23169513-23169532 Msa0110350:five_prime_UTR 30.0%
! GATTGAGTTTTCACTGTTTA+AGG - chr1_3:23169771-23169790 None:intergenic 30.0%
TAAACAGTGAAAACTCAATC+TGG + chr1_3:23169771-23169790 Msa0110350:five_prime_UTR 30.0%
!!! GGGATTTTGTGTTTTGAAAA+TGG + chr1_3:23170020-23170039 Msa0110350:intron 30.0%
GTTTCTTTGGATTCAATTGT+AGG + chr1_3:23170111-23170130 Msa0110350:intron 30.0%
GATTAACAAGATCCAGTTTA+GGG + chr1_3:23170212-23170231 Msa0110350:CDS 30.0%
!! CAATGTTGGTGATATGTTTA+TGG - chr1_3:23170348-23170367 None:intergenic 30.0%
CCTGTAATCAAAATCAATGT+TGG - chr1_3:23170362-23170381 None:intergenic 30.0%
!!! CCAACATTGATTTTGATTAC+AGG + chr1_3:23170359-23170378 Msa0110350:intron 30.0%
GCACAAATTTAAAGGCAAAT+AGG - chr1_3:23170603-23170622 None:intergenic 30.0%
AAGATCTGCATATAAAGTGA+TGG + chr1_3:23170633-23170652 Msa0110350:three_prime_UTR 30.0%
AGATCTGCATATAAAGTGAT+GGG + chr1_3:23170634-23170653 Msa0110350:three_prime_UTR 30.0%
AATTATCTTGTCACTCTTGA+TGG - chr1_3:23170840-23170859 None:intergenic 30.0%
TATGCATTAGTCATGTTTGT+AGG + chr1_3:23170885-23170904 Msa0110350:intron 30.0%
! ATTTTGTCAAATCTTGGGAA+GGG + chr1_3:23171099-23171118 Msa0110350:three_prime_UTR 30.0%
AATTCTAATGGTTGTGCTAA+TGG + chr1_3:23171130-23171149 Msa0110350:three_prime_UTR 30.0%
AACCAAACTTTACTTGACTA+AGG + chr1_3:23171298-23171317 Msa0110350:three_prime_UTR 30.0%
TTCCTTAGTCAAGTAAAGTT+TGG - chr1_3:23171303-23171322 None:intergenic 30.0%
AACTTTACTTGACTAAGGAA+TGG + chr1_3:23171303-23171322 Msa0110350:three_prime_UTR 30.0%
TAAGGAATGGAACCATAAAA+CGG + chr1_3:23171316-23171335 Msa0110350:three_prime_UTR 30.0%
TATTATGTGCTTTGTAGACT+TGG + chr1_3:23171427-23171446 Msa0110350:intron 30.0%
TTCATTGTCAAATTTGAAGG+TGG + chr1_3:23171660-23171679 Msa0110350:intron 30.0%
ATTAATATGTCAAAGCCTCA+AGG + chr1_3:23171709-23171728 Msa0110350:three_prime_UTR 30.0%
AGTTAGCCATATCATATACA+TGG - chr1_3:23171833-23171852 None:intergenic 30.0%
TGGAGAAGGAGATAATGTTT+GGG - chr1_3:23167612-23167631 None:intergenic 35.0%
TTGGAGAAGGAGATAATGTT+TGG - chr1_3:23167613-23167632 None:intergenic 35.0%
!!! GGGTTTTTCTTTGGTTTTGA+TGG - chr1_3:23167716-23167735 None:intergenic 35.0%
!! TGATGTTTGGGGTTTTTCTT+TGG - chr1_3:23167725-23167744 None:intergenic 35.0%
!!! ATGGTGTTTGTGGTTTTTTG+AGG - chr1_3:23167831-23167850 None:intergenic 35.0%
ATGTGTTGAGTAGTAATGCT+GGG - chr1_3:23167861-23167880 None:intergenic 35.0%
AATGTGTTGAGTAGTAATGC+TGG - chr1_3:23167862-23167881 None:intergenic 35.0%
!! TTTTATTGGTGGGTCTATGA+AGG - chr1_3:23167902-23167921 None:intergenic 35.0%
!!! CTACAGATGGTTTTATTGGT+GGG - chr1_3:23167912-23167931 None:intergenic 35.0%
!!! TCTACAGATGGTTTTATTGG+TGG - chr1_3:23167913-23167932 None:intergenic 35.0%
!!! GGATCTACAGATGGTTTTAT+TGG - chr1_3:23167916-23167935 None:intergenic 35.0%
TGATTTCACATTGTGTTGGA+GGG - chr1_3:23167984-23168003 None:intergenic 35.0%
ATGATTTCACATTGTGTTGG+AGG - chr1_3:23167985-23168004 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG + chr1_3:23168177-23168196 Msa0110350:five_prime_UTR 35.0%
! AAAACACGTTTGGGATAAGT+TGG - chr1_3:23168206-23168225 None:intergenic 35.0%
TGAAACCAGAAAACACGTTT+GGG - chr1_3:23168215-23168234 None:intergenic 35.0%
TTGAAACCAGAAAACACGTT+TGG - chr1_3:23168216-23168235 None:intergenic 35.0%
GGACAATACAATCCTTCTAA+CGG + chr1_3:23168291-23168310 Msa0110350:five_prime_UTR 35.0%
TACAATCCTTCTAACGGAAT+TGG + chr1_3:23168297-23168316 Msa0110350:five_prime_UTR 35.0%
AAACAAAGCCAAACTTGTGT+TGG - chr1_3:23168328-23168347 None:intergenic 35.0%
!! AACACAAGTTTGGCTTTGTT+TGG + chr1_3:23168327-23168346 Msa0110350:five_prime_UTR 35.0%
GGTGTAAGCTTGATTTCATA+AGG - chr1_3:23168387-23168406 None:intergenic 35.0%
GAAATCAAGCTTACACCAAA+CGG + chr1_3:23168390-23168409 Msa0110350:five_prime_UTR 35.0%
ATTGTTTGGATATCACCGTT+TGG - chr1_3:23168408-23168427 None:intergenic 35.0%
AACGGTGATATCCAAACAAT+CGG + chr1_3:23168408-23168427 Msa0110350:five_prime_UTR 35.0%
GTTTGCCGTTAAAATCTTGA+CGG - chr1_3:23168434-23168453 None:intergenic 35.0%
ACTGCTCATCCTAAAATTGA+CGG + chr1_3:23168468-23168487 Msa0110350:five_prime_UTR 35.0%
! GAAACTTTTGCTTTCCGTTA+CGG + chr1_3:23168501-23168520 Msa0110350:five_prime_UTR 35.0%
TAGGTTAAAAATGGTGGCAT+AGG - chr1_3:23168528-23168547 None:intergenic 35.0%
CGGAAATAGGTTAAAAATGG+TGG - chr1_3:23168534-23168553 None:intergenic 35.0%
! AAGAAAAGAAGGTCTTGTCA+TGG - chr1_3:23168601-23168620 None:intergenic 35.0%
GCGAAATCATGAAGAAAAGA+AGG - chr1_3:23168612-23168631 None:intergenic 35.0%
AATCCTCTTGACATGATTTC+TGG + chr1_3:23168678-23168697 Msa0110350:five_prime_UTR 35.0%
!! CCTTGAAACTTTTGATGGAT+CGG - chr1_3:23168721-23168740 None:intergenic 35.0%
CCATCAAAAGTTTCAAGGAT+CGG + chr1_3:23168723-23168742 Msa0110350:five_prime_UTR 35.0%
GGTGATAAATGGTGATTACA+TGG + chr1_3:23169007-23169026 Msa0110350:five_prime_UTR 35.0%
AATCCAATGCCAAAGATTTC+AGG + chr1_3:23169065-23169084 Msa0110350:five_prime_UTR 35.0%
GTGAAGATAGATGTGTTGAA+AGG + chr1_3:23169092-23169111 Msa0110350:five_prime_UTR 35.0%
! AGAAGAGGATGATGGTTATT+TGG + chr1_3:23169193-23169212 Msa0110350:five_prime_UTR 35.0%
TTATGTGCATGATGAGAAGA+AGG + chr1_3:23169220-23169239 Msa0110350:five_prime_UTR 35.0%
TATGTGCATGATGAGAAGAA+GGG + chr1_3:23169221-23169240 Msa0110350:five_prime_UTR 35.0%
! TTTTCCACTTATATCCGGTA+AGG + chr1_3:23169487-23169506 Msa0110350:five_prime_UTR 35.0%
TATACAACACTCTACCTTAC+CGG - chr1_3:23169504-23169523 None:intergenic 35.0%
AAAATACCCATGCCACATAA+GGG - chr1_3:23169584-23169603 None:intergenic 35.0%
AAAAATACCCATGCCACATA+AGG - chr1_3:23169585-23169604 None:intergenic 35.0%
! GTTGTTTCACTCTCTATTGT+CGG + chr1_3:23169906-23169925 Msa0110350:five_prime_UTR 35.0%
TGATTCTCCATCTTTGTTGA+AGG + chr1_3:23169943-23169962 Msa0110350:five_prime_UTR 35.0%
GGTTTGAGGGTTGTAATTTA+GGG + chr1_3:23170000-23170019 Msa0110350:intron 35.0%
AGGATTGAATGAAGAGTCAA+AGG + chr1_3:23170131-23170150 Msa0110350:intron 35.0%
!! ATCAAAAAGCATCTCAGCAT+AGG - chr1_3:23170157-23170176 None:intergenic 35.0%
!! TGCTTTTTGATACTCTTGCT+CGG + chr1_3:23170166-23170185 Msa0110350:CDS 35.0%
CGATTAACAAGATCCAGTTT+AGG + chr1_3:23170211-23170230 Msa0110350:CDS 35.0%
! TACATCTTTTACCTCTTCCT+CGG - chr1_3:23170413-23170432 None:intergenic 35.0%
AGGAAGAGGTAAAAGATGTA+TGG + chr1_3:23170413-23170432 Msa0110350:CDS 35.0%
ATACTATTTGCTCTGTGGAT+TGG + chr1_3:23170537-23170556 Msa0110350:intron 35.0%
ATACTATTTGCTCTGTGGAT+TGG + chr1_3:23170537-23170556 Msa0110350:intron 35.0%
GATCTGCATATAAAGTGATG+GGG + chr1_3:23170635-23170654 Msa0110350:three_prime_UTR 35.0%
ATCTGCATATAAAGTGATGG+GGG + chr1_3:23170636-23170655 Msa0110350:three_prime_UTR 35.0%
GCAAACAGGCAATAAGATAA+TGG - chr1_3:23170714-23170733 None:intergenic 35.0%
!! TGATGGCCTCAATTTTAACA+AGG + chr1_3:23170793-23170812 Msa0110350:three_prime_UTR 35.0%
! ATTTTTGCAGATGATAGCTC+TGG + chr1_3:23170944-23170963 Msa0110350:intron 35.0%
!!! AAGCTGAATGAGCCTTTTTT+CGG + chr1_3:23171053-23171072 Msa0110350:three_prime_UTR 35.0%
ACAAAATGCCAGTAACTTGA+TGG - chr1_3:23171086-23171105 None:intergenic 35.0%
! ACTGGCATTTTGTCAAATCT+TGG + chr1_3:23171093-23171112 Msa0110350:three_prime_UTR 35.0%
! CTGGCATTTTGTCAAATCTT+GGG + chr1_3:23171094-23171113 Msa0110350:three_prime_UTR 35.0%
! CATTTTGTCAAATCTTGGGA+AGG + chr1_3:23171098-23171117 Msa0110350:three_prime_UTR 35.0%
! TTTTGTCAAATCTTGGGAAG+GGG + chr1_3:23171100-23171119 Msa0110350:three_prime_UTR 35.0%
!! AAACCTGTGAGTTTGTTGAA+GGG - chr1_3:23171215-23171234 None:intergenic 35.0%
! TCAAGTAAAGTTTGGTTCCA+TGG - chr1_3:23171295-23171314 None:intergenic 35.0%
AATGGAACCATAAAACGGTT+AGG + chr1_3:23171321-23171340 Msa0110350:intron 35.0%
TTTGTAGACTTGGATGTATC+TGG + chr1_3:23171437-23171456 Msa0110350:intron 35.0%
TCCAATGCATAAATGGTGAT+GGG - chr1_3:23171468-23171487 None:intergenic 35.0%
AAGTCTCTCCAATGCATAAA+TGG - chr1_3:23171475-23171494 None:intergenic 35.0%
AAAGTCTGTGCGAATATTGA+AGG + chr1_3:23171518-23171537 Msa0110350:three_prime_UTR 35.0%
TGTTTATCCTGGAAATGTGT+TGG + chr1_3:23171684-23171703 Msa0110350:three_prime_UTR 35.0%
TTAATTGCCAACACATTTCC+AGG - chr1_3:23171694-23171713 None:intergenic 35.0%
CTCTTATAGCTAAATCCTTG+AGG - chr1_3:23171727-23171746 None:intergenic 35.0%
CAAGGATTTAGCTATAAGAG+TGG + chr1_3:23171727-23171746 Msa0110350:three_prime_UTR 35.0%
ATTCGGCCATGTATATGATA+TGG + chr1_3:23171824-23171843 Msa0110350:three_prime_UTR 35.0%
TACTCATATCATCTACATGG+TGG - chr1_3:23171886-23171905 None:intergenic 35.0%
GAGAAGGAGATAATGTTTGG+GGG - chr1_3:23167610-23167629 None:intergenic 40.0%
GGAGAAGGAGATAATGTTTG+GGG - chr1_3:23167611-23167630 None:intergenic 40.0%
!!! TTTTGGGATCATGGTGTTGT+TGG - chr1_3:23167632-23167651 None:intergenic 40.0%
!!! TATGATGGGTTTTGGGATCA+TGG - chr1_3:23167641-23167660 None:intergenic 40.0%
TGGATGAGATGTTAAAGGGA+GGG - chr1_3:23167696-23167715 None:intergenic 40.0%
ATGGATGAGATGTTAAAGGG+AGG - chr1_3:23167697-23167716 None:intergenic 40.0%
! TGTCTGGGATTGTGATGTTT+GGG - chr1_3:23167737-23167756 None:intergenic 40.0%
! TGTAGGAAGAGTTTTTGTGG+GGG - chr1_3:23167782-23167801 None:intergenic 40.0%
! GTGTAGGAAGAGTTTTTGTG+GGG - chr1_3:23167783-23167802 None:intergenic 40.0%
! GGTGTAGGAAGAGTTTTTGT+GGG - chr1_3:23167784-23167803 None:intergenic 40.0%
!!! TTTTTTGAGGTTATGGGTGG+TGG - chr1_3:23167818-23167837 None:intergenic 40.0%
!!! TGGTTTTTTGAGGTTATGGG+TGG - chr1_3:23167821-23167840 None:intergenic 40.0%
ACATGTCTTGGATCTACAGA+TGG - chr1_3:23167925-23167944 None:intergenic 40.0%
AACGGCGCTTACATAAGAAA+TGG + chr1_3:23168030-23168049 Msa0110350:five_prime_UTR 40.0%
CACGCCATTACAATCTCAAA+CGG + chr1_3:23168114-23168133 Msa0110350:five_prime_UTR 40.0%
! CTTATCCCAAACGTGTTTTC+TGG + chr1_3:23168207-23168226 Msa0110350:five_prime_UTR 40.0%
GCTAAACCAATTCCGTTAGA+AGG - chr1_3:23168306-23168325 None:intergenic 40.0%
TGGTTTAGCCAACACAAGTT+TGG + chr1_3:23168317-23168336 Msa0110350:five_prime_UTR 40.0%
! ATCGGCCGTCAAGATTTTAA+CGG + chr1_3:23168426-23168445 Msa0110350:five_prime_UTR 40.0%
GTGTTTACGGATATTCAGCT+TGG + chr1_3:23168651-23168670 Msa0110350:five_prime_UTR 40.0%
CCGATCCATCAAAAGTTTCA+AGG + chr1_3:23168718-23168737 Msa0110350:five_prime_UTR 40.0%
! CCGATCCTTGAAACTTTTGA+TGG - chr1_3:23168726-23168745 None:intergenic 40.0%
GCGTGCATGATATTAAATCC+TGG - chr1_3:23168801-23168820 None:intergenic 40.0%
TGCTCAATGGAGAGAACATT+CGG - chr1_3:23168876-23168895 None:intergenic 40.0%
! TCTAGGTTTCGCACTGATAA+TGG - chr1_3:23168981-23169000 None:intergenic 40.0%
TCAGTGCGAAACCTAGATTT+CGG + chr1_3:23168984-23169003 Msa0110350:five_prime_UTR 40.0%
CATTTATCACCCCGAAATCT+AGG - chr1_3:23168998-23169017 None:intergenic 40.0%
CTAGATTTCGGGGTGATAAA+TGG + chr1_3:23168996-23169015 Msa0110350:five_prime_UTR 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG + chr1_3:23169041-23169060 Msa0110350:five_prime_UTR 40.0%
! GGTTTGTTTATGCGGCAATT+GGG + chr1_3:23169042-23169061 Msa0110350:five_prime_UTR 40.0%
ACTCCTGAAATCTTTGGCAT+TGG - chr1_3:23169071-23169090 None:intergenic 40.0%
AATGCCAAAGATTTCAGGAG+TGG + chr1_3:23169070-23169089 Msa0110350:five_prime_UTR 40.0%
TTCACCACTCCTGAAATCTT+TGG - chr1_3:23169077-23169096 None:intergenic 40.0%
GATAGATGTGTTGAAAGGTG+AGG + chr1_3:23169097-23169116 Msa0110350:five_prime_UTR 40.0%
GAAGTTGGATGTAGGTTGTA+TGG + chr1_3:23169119-23169138 Msa0110350:five_prime_UTR 40.0%
TTGTATGGAGAGGGTTGTTA+TGG + chr1_3:23169134-23169153 Msa0110350:five_prime_UTR 40.0%
!!! AGAGTCAAGGTTTTTGGTGA+TGG + chr1_3:23169244-23169263 Msa0110350:five_prime_UTR 40.0%
TCTACCTTACCGGATATAAG+TGG - chr1_3:23169494-23169513 None:intergenic 40.0%
AAATACCCATGCCACATAAG+GGG - chr1_3:23169583-23169602 None:intergenic 40.0%
GAGATCTAAGAGAGAGAAGA+GGG - chr1_3:23169636-23169655 None:intergenic 40.0%
TAGTATACCACTCCCATAAC+CGG + chr1_3:23169727-23169746 Msa0110350:five_prime_UTR 40.0%
AAAATGAGGACCGAAAGTGA+GGG - chr1_3:23169845-23169864 None:intergenic 40.0%
AAAAATGAGGACCGAAAGTG+AGG - chr1_3:23169846-23169865 None:intergenic 40.0%
AGAGTGAAACAACAACGAGT+GGG - chr1_3:23169899-23169918 None:intergenic 40.0%
AGATGGAGAATCAGCAATAG+AGG - chr1_3:23169936-23169955 None:intergenic 40.0%
GATCTCACCTTCAACAAAGA+TGG - chr1_3:23169953-23169972 None:intergenic 40.0%
TCCTTCAATTTGTGGGTTTG+AGG + chr1_3:23169986-23170005 Msa0110350:intron 40.0%
CCTTCAATTTGTGGGTTTGA+GGG + chr1_3:23169987-23170006 Msa0110350:intron 40.0%
GGGTTTGAGGGTTGTAATTT+AGG + chr1_3:23169999-23170018 Msa0110350:intron 40.0%
! CAGACCAAAGCTTTGATACT+AGG + chr1_3:23170253-23170272 Msa0110350:CDS 40.0%
TGAGCCTAGTATCAAAGCTT+TGG - chr1_3:23170260-23170279 None:intergenic 40.0%
! GCTTTTGTTCCTTTCGATGA+TGG + chr1_3:23170776-23170795 Msa0110350:three_prime_UTR 40.0%
AAATTGAGGCCATCATCGAA+AGG - chr1_3:23170788-23170807 None:intergenic 40.0%
GGATTATAGCAGCTTTCACA+AGG + chr1_3:23170906-23170925 Msa0110350:intron 40.0%
!! ATAGCTCTGGCAATAGCAAT+TGG + chr1_3:23170957-23170976 Msa0110350:three_prime_UTR 40.0%
GATGGTTTCTCTCCGAAAAA+AGG - chr1_3:23171068-23171087 None:intergenic 40.0%
GAGAGAAACCATCAAGTTAC+TGG + chr1_3:23171075-23171094 Msa0110350:three_prime_UTR 40.0%
AGGGGTAACAGGAATTCTAA+TGG + chr1_3:23171118-23171137 Msa0110350:three_prime_UTR 40.0%
AATGGCAATAGCCTTTACAC+TGG + chr1_3:23171148-23171167 Msa0110350:three_prime_UTR 40.0%
ATTCCTCCTGAACCTAGTAT+TGG - chr1_3:23171174-23171193 None:intergenic 40.0%
GTTGAAGGGTTTAGGTAGTT+TGG - chr1_3:23171201-23171220 None:intergenic 40.0%
!! GTGAGTTTGTTGAAGGGTTT+AGG - chr1_3:23171209-23171228 None:intergenic 40.0%
AAACCCTTCAACAAACTCAC+AGG + chr1_3:23171209-23171228 Msa0110350:three_prime_UTR 40.0%
!! GAAACCTGTGAGTTTGTTGA+AGG - chr1_3:23171216-23171235 None:intergenic 40.0%
! TCACAGGTTTCAATGCCTTT+TGG + chr1_3:23171225-23171244 Msa0110350:three_prime_UTR 40.0%
GAGGTGATGAGAATACCAAA+AGG - chr1_3:23171243-23171262 None:intergenic 40.0%
! TATGCCCTGTTGATTATCCA+TGG + chr1_3:23171275-23171294 Msa0110350:three_prime_UTR 40.0%
GGTTCCATGGATAATCAACA+GGG - chr1_3:23171282-23171301 None:intergenic 40.0%
TGGTTCCATGGATAATCAAC+AGG - chr1_3:23171283-23171302 None:intergenic 40.0%
! TGAAGGTCCTAACCGTTTTA+TGG - chr1_3:23171331-23171350 None:intergenic 40.0%
CCAAAGTAAGGGTTAACTGA+AGG - chr1_3:23171348-23171367 None:intergenic 40.0%
CCTTCAGTTAACCCTTACTT+TGG + chr1_3:23171345-23171364 Msa0110350:intron 40.0%
TCCCATCACCATTTATGCAT+TGG + chr1_3:23171464-23171483 Msa0110350:three_prime_UTR 40.0%
CTCCAATGCATAAATGGTGA+TGG - chr1_3:23171469-23171488 None:intergenic 40.0%
GGGGTTGTAGTGAAAGATTG+GGG - chr1_3:23167591-23167610 None:intergenic 45.0%
GGGGGTTGTAGTGAAAGATT+GGG - chr1_3:23167592-23167611 None:intergenic 45.0%
TGGGGGTTGTAGTGAAAGAT+TGG - chr1_3:23167593-23167612 None:intergenic 45.0%
!! GATCATGGTGTTGTTGGAGA+AGG - chr1_3:23167626-23167645 None:intergenic 45.0%
AAGGGAGGGATAGAAGTTGT+TGG - chr1_3:23167682-23167701 None:intergenic 45.0%
! GTCTGGGATTGTGATGTTTG+GGG - chr1_3:23167736-23167755 None:intergenic 45.0%
! GTGTCTGGGATTGTGATGTT+TGG - chr1_3:23167738-23167757 None:intergenic 45.0%
!!! GGTGGTGGTTTTTAGTGTCT+GGG - chr1_3:23167752-23167771 None:intergenic 45.0%
!!! TGGTGGTGGTTTTTAGTGTC+TGG - chr1_3:23167753-23167772 None:intergenic 45.0%
! GTAGGAAGAGTTTTTGTGGG+GGG - chr1_3:23167781-23167800 None:intergenic 45.0%
! GGGTGTAGGAAGAGTTTTTG+TGG - chr1_3:23167785-23167804 None:intergenic 45.0%
AGTAATGCTGGGAGTGATGA+TGG - chr1_3:23167850-23167869 None:intergenic 45.0%
ACACTTCCACCGTCACTTAA+CGG + chr1_3:23168012-23168031 Msa0110350:five_prime_UTR 45.0%
! ATGTAAGCGCCGTTAAGTGA+CGG - chr1_3:23168024-23168043 None:intergenic 45.0%
AATCTTGACGGCCGATTGTT+TGG - chr1_3:23168422-23168441 None:intergenic 45.0%
AGGATGAGCAGTCATACTCA+TGG - chr1_3:23168460-23168479 None:intergenic 45.0%
! GGTCTTGTCATGGAGAAAAC+CGG - chr1_3:23168591-23168610 None:intergenic 45.0%
CCACCAGAAATCATGTCAAG+AGG - chr1_3:23168684-23168703 None:intergenic 45.0%
! CCTCTTGACATGATTTCTGG+TGG + chr1_3:23168681-23168700 Msa0110350:five_prime_UTR 45.0%
!! ATTTCTGGTGGTTCTCCAGT+AGG + chr1_3:23168693-23168712 Msa0110350:five_prime_UTR 45.0%
! TTTGATGGATCGGAACCTAC+TGG - chr1_3:23168711-23168730 None:intergenic 45.0%
GTGACGAGTCGAAGATGAAA+TGG + chr1_3:23168766-23168785 Msa0110350:five_prime_UTR 45.0%
ATGAAATGGTTCGATGTGCC+AGG + chr1_3:23168780-23168799 Msa0110350:five_prime_UTR 45.0%
TCTCTCCATTGAGCATACGA+TGG + chr1_3:23168881-23168900 Msa0110350:five_prime_UTR 45.0%
TCTCTCCATCGTATGCTCAA+TGG - chr1_3:23168889-23168908 None:intergenic 45.0%
CAGTGCGAAACCTAGATTTC+GGG + chr1_3:23168985-23169004 Msa0110350:five_prime_UTR 45.0%
AGTGCGAAACCTAGATTTCG+GGG + chr1_3:23168986-23169005 Msa0110350:five_prime_UTR 45.0%
GTGTTGAAAGGTGAGGAAGT+TGG + chr1_3:23169104-23169123 Msa0110350:five_prime_UTR 45.0%
AAGGTGAGGAAGTTGGATGT+AGG + chr1_3:23169111-23169130 Msa0110350:five_prime_UTR 45.0%
TGGATGTAGGTTGTATGGAG+AGG + chr1_3:23169124-23169143 Msa0110350:five_prime_UTR 45.0%
GGATGTAGGTTGTATGGAGA+GGG + chr1_3:23169125-23169144 Msa0110350:five_prime_UTR 45.0%
TATGGAGAGGGTTGTTATGG+TGG + chr1_3:23169137-23169156 Msa0110350:five_prime_UTR 45.0%
GATGGTGAAGAAGAGGATGA+TGG + chr1_3:23169185-23169204 Msa0110350:five_prime_UTR 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG + chr1_3:23169231-23169250 Msa0110350:five_prime_UTR 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG + chr1_3:23169238-23169257 Msa0110350:five_prime_UTR 45.0%
GAGTGACATCACCAAGTTGT+CGG + chr1_3:23169355-23169374 Msa0110350:five_prime_UTR 45.0%
TGGAAGAGTGGTATGGAGAA+GGG - chr1_3:23169556-23169575 None:intergenic 45.0%
ATGGAAGAGTGGTATGGAGA+AGG - chr1_3:23169557-23169576 None:intergenic 45.0%
! ATAAGGGGTGTATGGAAGAG+TGG - chr1_3:23169568-23169587 None:intergenic 45.0%
TCTTCCATACACCCCTTATG+TGG + chr1_3:23169569-23169588 Msa0110350:five_prime_UTR 45.0%
ATACACCCCTTATGTGGCAT+GGG + chr1_3:23169575-23169594 Msa0110350:five_prime_UTR 45.0%
GGAGATCTAAGAGAGAGAAG+AGG - chr1_3:23169637-23169656 None:intergenic 45.0%
AGAGTGAGAGGGAGAAGAAA+GGG - chr1_3:23169658-23169677 None:intergenic 45.0%
GGTTATGGGAGTGGTATACT+AGG - chr1_3:23169728-23169747 None:intergenic 45.0%
CTGTTTAAGGGAGAGAGAGT+GGG - chr1_3:23169758-23169777 None:intergenic 45.0%
ACTGTTTAAGGGAGAGAGAG+TGG - chr1_3:23169759-23169778 None:intergenic 45.0%
GAGAGTGAAACAACAACGAG+TGG - chr1_3:23169900-23169919 None:intergenic 45.0%
CCCTCAAACCCACAAATTGA+AGG - chr1_3:23169990-23170009 None:intergenic 45.0%
ATACTCTTGCTCGGCAGATA+GGG + chr1_3:23170175-23170194 Msa0110350:CDS 45.0%
AGATCCAGTTTAGGGAGTTC+TGG + chr1_3:23170220-23170239 Msa0110350:CDS 45.0%
GATCCAGTTTAGGGAGTTCT+GGG + chr1_3:23170221-23170240 Msa0110350:CDS 45.0%
AGGGTTGACAAAGATGCAGA+TGG + chr1_3:23170379-23170398 Msa0110350:intron 45.0%
!! CTGTGGATTGGTGTCATGTT+AGG + chr1_3:23170577-23170596 Msa0110350:intron 45.0%
ACTGTGTGTGCATGGCAAAA+GGG + chr1_3:23170660-23170679 Msa0110350:three_prime_UTR 45.0%
TTTGCCGAAACACCATCACT+TGG + chr1_3:23170729-23170748 Msa0110350:three_prime_UTR 45.0%
! TGAGCCAAGTGATGGTGTTT+CGG - chr1_3:23170736-23170755 None:intergenic 45.0%
!! AGGAACAAAAGCACCTAGCT+TGG - chr1_3:23170768-23170787 None:intergenic 45.0%
CTGGCAATAGCAATTGGTGT+TGG + chr1_3:23170963-23170982 Msa0110350:three_prime_UTR 45.0%
TTGCTTGCATGAAGAATGCG+AGG - chr1_3:23171023-23171042 None:intergenic 45.0%
AAATCTTGGGAAGGGGTAAC+AGG + chr1_3:23171107-23171126 Msa0110350:three_prime_UTR 45.0%
!! CCTAGTATTGGCCAGTGTAA+AGG - chr1_3:23171162-23171181 None:intergenic 45.0%
CCTTTACACTGGCCAATACT+AGG + chr1_3:23171159-23171178 Msa0110350:three_prime_UTR 45.0%
GGGCATACACAATGATGAAG+AGG - chr1_3:23171262-23171281 None:intergenic 45.0%
TTGAAGGTGGCTGTTTATCC+TGG + chr1_3:23171673-23171692 Msa0110350:intron 45.0%
GGAGGGATAGAAGTTGTTGG+TGG - chr1_3:23167679-23167698 None:intergenic 50.0%
!! AGTTTTTGTGGGGGGTGTAG+TGG - chr1_3:23167773-23167792 None:intergenic 50.0%
! TTTGAGGTTATGGGTGGTGG+TGG - chr1_3:23167815-23167834 None:intergenic 50.0%
!! GGGAGTGATGATGGTGTTTG+TGG - chr1_3:23167841-23167860 None:intergenic 50.0%
CGTGGAAGAAACTGTGGGTT+TGG - chr1_3:23168057-23168076 None:intergenic 50.0%
AACCCACAGTTTCTTCCACG+TGG + chr1_3:23168057-23168076 Msa0110350:five_prime_UTR 50.0%
GTCCACGTGGAAGAAACTGT+GGG - chr1_3:23168062-23168081 None:intergenic 50.0%
AACGTAACGGCTACAGAGTG+TGG - chr1_3:23168145-23168164 None:intergenic 50.0%
CTTATAGCTTCTGCTGCACG+TGG + chr1_3:23168240-23168259 Msa0110350:five_prime_UTR 50.0%
! CCAGTGTCGCCGTCAATTTT+AGG - chr1_3:23168480-23168499 None:intergenic 50.0%
CCTAAAATTGACGGCGACAC+TGG + chr1_3:23168477-23168496 Msa0110350:five_prime_UTR 50.0%
ATGGTGGCATAGGACCGTAA+CGG - chr1_3:23168518-23168537 None:intergenic 50.0%
GACTCGTCACTAGCATAACG+AGG - chr1_3:23168756-23168775 None:intergenic 50.0%
ACGCGATCAATGCGTGTGAT+GGG + chr1_3:23168817-23168836 Msa0110350:five_prime_UTR 50.0%
! GTGTGATGGGGAAGATGATG+AGG + chr1_3:23168830-23168849 Msa0110350:five_prime_UTR 50.0%
!!! TGAGCCGTTTTTCGTGGCAA+GGG + chr1_3:23169160-23169179 Msa0110350:five_prime_UTR 50.0%
TCCTCCCTTGCCACGAAAAA+CGG - chr1_3:23169167-23169186 None:intergenic 50.0%
! TTTTTCGTGGCAAGGGAGGA+TGG + chr1_3:23169167-23169186 Msa0110350:five_prime_UTR 50.0%
AAGGGAGGATGGTGAAGAAG+AGG + chr1_3:23169178-23169197 Msa0110350:five_prime_UTR 50.0%
TCCGCCACAATCTCAAACTC+CGG - chr1_3:23169281-23169300 None:intergenic 50.0%
!!! AGGGTGCCGTATGGTTTTCA+TGG + chr1_3:23169317-23169336 Msa0110350:five_prime_UTR 50.0%
!! ACCAAGTTGTCGGTGTCGTA+GGG + chr1_3:23169365-23169384 Msa0110350:five_prime_UTR 50.0%
GGGTGTATGGAAGAGTGGTA+TGG - chr1_3:23169563-23169582 None:intergenic 50.0%
! CATGCCACATAAGGGGTGTA+TGG - chr1_3:23169576-23169595 None:intergenic 50.0%
CATACACCCCTTATGTGGCA+TGG + chr1_3:23169574-23169593 Msa0110350:five_prime_UTR 50.0%
CAGAGTGAGAGGGAGAAGAA+AGG - chr1_3:23169659-23169678 None:intergenic 50.0%
AGTGGTATACTAGGATGCGG+CGG - chr1_3:23169719-23169738 None:intergenic 50.0%
GGGAGTGGTATACTAGGATG+CGG - chr1_3:23169722-23169741 None:intergenic 50.0%
AGGGAGTGAGAGTGATCTGA+CGG - chr1_3:23169826-23169845 None:intergenic 50.0%
CACTCTCACTCCCTCACTTT+CGG + chr1_3:23169832-23169851 Msa0110350:five_prime_UTR 50.0%
GTGAAACAACAACGAGTGGG+AGG - chr1_3:23169896-23169915 None:intergenic 50.0%
GATACTCTTGCTCGGCAGAT+AGG + chr1_3:23170174-23170193 Msa0110350:CDS 50.0%
AGTCCCAGAACTCCCTAAAC+TGG - chr1_3:23170227-23170246 None:intergenic 50.0%
TGCAGATGGAAGAATCACCG+AGG + chr1_3:23170393-23170412 Msa0110350:CDS 50.0%
TGGAAGAATCACCGAGGAAG+AGG + chr1_3:23170399-23170418 Msa0110350:CDS 50.0%
CACTGTGTGTGCATGGCAAA+AGG + chr1_3:23170659-23170678 Msa0110350:three_prime_UTR 50.0%
CTGTGTGTGCATGGCAAAAG+GGG + chr1_3:23170661-23170680 Msa0110350:three_prime_UTR 50.0%
! GTGATGGTGTTTCGGCAAAC+AGG - chr1_3:23170728-23170747 None:intergenic 50.0%
GAAACACCATCACTTGGCTC+AGG + chr1_3:23170735-23170754 Msa0110350:three_prime_UTR 50.0%
CCTATTCCTGAGCCAAGTGA+TGG - chr1_3:23170744-23170763 None:intergenic 50.0%
CCATCACTTGGCTCAGGAAT+AGG + chr1_3:23170741-23170760 Msa0110350:three_prime_UTR 50.0%
CTCAGGAATAGGACCAAGCT+AGG + chr1_3:23170752-23170771 Msa0110350:three_prime_UTR 50.0%
CACTGGCCAATACTAGGTTC+AGG + chr1_3:23171165-23171184 Msa0110350:three_prime_UTR 50.0%
TGGCCAATACTAGGTTCAGG+AGG + chr1_3:23171168-23171187 Msa0110350:three_prime_UTR 50.0%
!! TTTTGTGGGGGGTGTAGTGG+TGG - chr1_3:23167770-23167789 None:intergenic 55.0%
!! TTATGGGTGGTGGTGGTGGT+GGG - chr1_3:23167808-23167827 None:intergenic 55.0%
GTGTTGGAGGGAGTTCGTCT+AGG - chr1_3:23167972-23167991 None:intergenic 55.0%
! TAAGCGCCGTTAAGTGACGG+TGG - chr1_3:23168021-23168040 None:intergenic 55.0%
GGTCCACGTGGAAGAAACTG+TGG - chr1_3:23168063-23168082 None:intergenic 55.0%
AAGAGGTGGTAAGGTCCACG+TGG - chr1_3:23168075-23168094 None:intergenic 55.0%
GGACCTTACCACCTCTTCGA+CGG + chr1_3:23168078-23168097 Msa0110350:five_prime_UTR 55.0%
TCACCGTCGAAGAGGTGGTA+AGG - chr1_3:23168084-23168103 None:intergenic 55.0%
TACCACCTCTTCGACGGTGA+TGG + chr1_3:23168084-23168103 Msa0110350:five_prime_UTR 55.0%
TCCAGATATGACACGTGCCG+CGG - chr1_3:23168274-23168293 None:intergenic 55.0%
CACGCGATCAATGCGTGTGA+TGG + chr1_3:23168816-23168835 Msa0110350:five_prime_UTR 55.0%
CGCGATCAATGCGTGTGATG+GGG + chr1_3:23168818-23168837 Msa0110350:five_prime_UTR 55.0%
!!! TGGTGGTGAGCCGTTTTTCG+TGG + chr1_3:23169154-23169173 Msa0110350:five_prime_UTR 55.0%
!!! GTGAGCCGTTTTTCGTGGCA+AGG + chr1_3:23169159-23169178 Msa0110350:five_prime_UTR 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG + chr1_3:23169274-23169293 Msa0110350:five_prime_UTR 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG + chr1_3:23169277-23169296 Msa0110350:five_prime_UTR 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG + chr1_3:23169280-23169299 Msa0110350:five_prime_UTR 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG + chr1_3:23169298-23169317 Msa0110350:five_prime_UTR 55.0%
AAACCATACGGCACCCTCCT+TGG - chr1_3:23169314-23169333 None:intergenic 55.0%
!! CACCAAGTTGTCGGTGTCGT+AGG + chr1_3:23169364-23169383 Msa0110350:five_prime_UTR 55.0%
TCCCTACGACACCGACAACT+TGG - chr1_3:23169369-23169388 None:intergenic 55.0%
!! TCGGTGTCGTAGGGAAGACA+TGG + chr1_3:23169374-23169393 Msa0110350:five_prime_UTR 55.0%
GAGTGGGAACGACCGGTTAT+GGG - chr1_3:23169742-23169761 None:intergenic 55.0%
AGAGTGGGAACGACCGGTTA+TGG - chr1_3:23169743-23169762 None:intergenic 55.0%
ACTGTGAGAGTGGGAGGAGA+AGG - chr1_3:23169797-23169816 None:intergenic 55.0%
GCTCGGCAGATAGGGATTCA+AGG + chr1_3:23170183-23170202 Msa0110350:CDS 55.0%
CGGCAGATAGGGATTCAAGG+AGG + chr1_3:23170186-23170205 Msa0110350:CDS 55.0%
!! TATGGGTGGTGGTGGTGGTG+GGG - chr1_3:23167807-23167826 None:intergenic 60.0%
!! GTTATGGGTGGTGGTGGTGG+TGG - chr1_3:23167809-23167828 None:intergenic 60.0%
!! GAGGTTATGGGTGGTGGTGG+TGG - chr1_3:23167812-23167831 None:intergenic 60.0%
! GGAGGGAGTTCGTCTAGGAC+TGG - chr1_3:23167967-23167986 None:intergenic 60.0%
TGCCATCACCGTCGAAGAGG+TGG - chr1_3:23168089-23168108 None:intergenic 60.0%
GCATGCCATCACCGTCGAAG+AGG - chr1_3:23168092-23168111 None:intergenic 60.0%
TATGACACGTGCCGCGGTGA+CGG - chr1_3:23168268-23168287 None:intergenic 60.0%
ACCGCGGCACGTGTCATATC+TGG + chr1_3:23168270-23168289 Msa0110350:five_prime_UTR 60.0%
!!! GCCGTTTTTCGTGGCAAGGG+AGG + chr1_3:23169163-23169182 Msa0110350:five_prime_UTR 60.0%
!! GGTGATGGATGCGAAGTCGC+CGG + chr1_3:23169259-23169278 Msa0110350:five_prime_UTR 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG + chr1_3:23169294-23169313 Msa0110350:five_prime_UTR 60.0%
CGGAGGTGAAGTTGCCAAGG+AGG + chr1_3:23169297-23169316 Msa0110350:five_prime_UTR 60.0%
!! TTGCCAAGGAGGGTGCCGTA+TGG + chr1_3:23169308-23169327 Msa0110350:five_prime_UTR 60.0%
GAGGCAGAGGCAGAGTGAGA+GGG - chr1_3:23169669-23169688 None:intergenic 60.0%
AGAGGCAGAGGCAGAGTGAG+AGG - chr1_3:23169670-23169689 None:intergenic 60.0%
GGTATACTAGGATGCGGCGG+CGG - chr1_3:23169716-23169735 None:intergenic 60.0%
GGAACGACCGGTTATGGGAG+TGG - chr1_3:23169737-23169756 None:intergenic 60.0%
GGAGAGAGAGTGGGAACGAC+CGG - chr1_3:23169749-23169768 None:intergenic 60.0%
CCTCCCACTCTCACAGTCGT+CGG + chr1_3:23169800-23169819 Msa0110350:five_prime_UTR 60.0%
!! ATGGGGGCACTGTGTGTGCA+TGG + chr1_3:23170652-23170671 Msa0110350:three_prime_UTR 60.0%
! TGTGGGGGGTGTAGTGGTGG+TGG - chr1_3:23167767-23167786 None:intergenic 65.0%
!! ATGGGTGGTGGTGGTGGTGG+GGG - chr1_3:23167806-23167825 None:intergenic 65.0%
GGCAGGTGAGTGAGAGGCAG+AGG - chr1_3:23169682-23169701 None:intergenic 65.0%
! GGTGGTGGCAGGTGAGTGAG+AGG - chr1_3:23169688-23169707 None:intergenic 65.0%
CACTCACCTGCCACCACCAC+TGG + chr1_3:23169690-23169709 Msa0110350:five_prime_UTR 65.0%
CCGACGACTGTGAGAGTGGG+AGG - chr1_3:23169803-23169822 None:intergenic 65.0%
CGGCCGACGACTGTGAGAGT+GGG - chr1_3:23169806-23169825 None:intergenic 65.0%
ACGGCCGACGACTGTGAGAG+TGG - chr1_3:23169807-23169826 None:intergenic 65.0%
!! GTGGTGGTGGTGGGGGGTGT+AGG - chr1_3:23167799-23167818 None:intergenic 70.0%
!! TGGGTGGTGGTGGTGGTGGG+GGG - chr1_3:23167805-23167824 None:intergenic 70.0%
TGCACGTGGCTCCGTCACCG+CGG + chr1_3:23168254-23168273 Msa0110350:five_prime_UTR 70.0%
TAGGATGCGGCGGCGGCCAG+TGG - chr1_3:23169709-23169728 None:intergenic 75.0%
!!! CGGCGGCCAGTGGTGGTGGC+AGG - chr1_3:23169699-23169718 None:intergenic 80.0%
! GATGCGGCGGCGGCCAGTGG+TGG - chr1_3:23169706-23169725 None:intergenic 80.0%
! GCGGCGGCGGCCAGTGGTGG+TGG - chr1_3:23169703-23169722 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 23167580 23171964 23167580 ID=Msa0110350;Name=Msa0110350
chr1_3 mRNA 23167580 23171964 23167580 ID=Msa0110350-mRNA-1;Parent=Msa0110350;Name=Msa0110350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=2417|1|1|1|0.66|0.57|7|1108|64
chr1_3 exon 23167580 23169964 23167580 ID=Msa0110350-mRNA-1:exon:8097;Parent=Msa0110350-mRNA-1
chr1_3 exon 23170133 23170295 23170133 ID=Msa0110350-mRNA-1:exon:8098;Parent=Msa0110350-mRNA-1
chr1_3 exon 23170381 23170554 23170381 ID=Msa0110350-mRNA-1:exon:8099;Parent=Msa0110350-mRNA-1
chr1_3 exon 23170583 23170814 23170583 ID=Msa0110350-mRNA-1:exon:8100;Parent=Msa0110350-mRNA-1
chr1_3 exon 23170954 23171337 23170954 ID=Msa0110350-mRNA-1:exon:8101;Parent=Msa0110350-mRNA-1
chr1_3 exon 23171444 23171539 23171444 ID=Msa0110350-mRNA-1:exon:8102;Parent=Msa0110350-mRNA-1
chr1_3 exon 23171679 23171964 23171679 ID=Msa0110350-mRNA-1:exon:8103;Parent=Msa0110350-mRNA-1
chr1_3 five_prime_UTR 23167580 23169964 23167580 ID=Msa0110350-mRNA-1:five_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 five_prime_UTR 23170133 23170164 23170133 ID=Msa0110350-mRNA-1:five_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 CDS 23170165 23170295 23170165 ID=Msa0110350-mRNA-1:cds;Parent=Msa0110350-mRNA-1
chr1_3 CDS 23170381 23170444 23170381 ID=Msa0110350-mRNA-1:cds;Parent=Msa0110350-mRNA-1
chr1_3 three_prime_UTR 23170445 23170554 23170445 ID=Msa0110350-mRNA-1:three_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 three_prime_UTR 23170583 23170814 23170583 ID=Msa0110350-mRNA-1:three_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 three_prime_UTR 23170954 23171337 23170954 ID=Msa0110350-mRNA-1:three_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 three_prime_UTR 23171444 23171539 23171444 ID=Msa0110350-mRNA-1:three_prime_utr;Parent=Msa0110350-mRNA-1
chr1_3 three_prime_UTR 23171679 23171964 23171679 ID=Msa0110350-mRNA-1:three_prime_utr;Parent=Msa0110350-mRNA-1
Gene Sequence

>Msa0110350

ATGCTTTTTGATACTCTTGCTCGGCAGATAGGGATTCAAGGAGGTTCGATTAACAAGATCCAGTTTAGGGAGTTCTGGGACTGTATTTCAGACCAAAGCTTTGATACTAGGCTCAAAATATTATTTGACATGGTTGACAAAGATGCAGATGGAAGAATCACCGAGGAAGAGGTAAAAGATGTATGGTACTTTTAA
Protein sequence

>Msa0110350

MLFDTLARQIGIQGGSINKIQFREFWDCISDQSFDTRLKILFDMVDKDADGRITEEEVKDVWYF*