Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270680 | XP_003593048.1 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270680 | sp|Q9SAC4|FB2_ARATH | 65.155 | 419 | 145 | 1 | 36 | 454 | 1 | 418 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270680 | A2Q3U4 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa0270680 | 0.822424 | 2.386233e-53 | -8.615850e-47 |
| Msa0078130 | Msa0270680 | 0.808015 | 3.810825e-50 | -8.615850e-47 |
| Msa0090440 | Msa0270680 | 0.804189 | 2.434582e-49 | -8.615850e-47 |
| Msa0091350 | Msa0270680 | 0.808975 | 2.378179e-50 | -8.615850e-47 |
| Msa0125590 | Msa0270680 | 0.802376 | 5.776595e-49 | -8.615850e-47 |
| Msa0127340 | Msa0270680 | 0.803112 | 4.072565e-49 | -8.615850e-47 |
| Msa0186180 | Msa0270680 | 0.808333 | 3.261443e-50 | -8.615850e-47 |
| Msa0188870 | Msa0270680 | 0.918558 | 1.342930e-86 | -8.615850e-47 |
| Msa0204970 | Msa0270680 | 0.823449 | 1.376943e-53 | -8.615850e-47 |
| Msa0249870 | Msa0270680 | 0.810602 | 1.062515e-50 | -8.615850e-47 |
| Msa0270680 | Msa0281540 | 0.804523 | 2.073481e-49 | -8.615850e-47 |
| Msa0270680 | Msa0320580 | 0.817705 | 2.870411e-52 | -8.615850e-47 |
| Msa0270680 | Msa0344110 | 0.826029 | 3.394274e-54 | -8.615850e-47 |
| Msa0270680 | Msa0373170 | 0.836328 | 9.978985e-57 | -8.615850e-47 |
| Msa0270680 | Msa0412130 | 0.824755 | 6.798073e-54 | -8.615850e-47 |
| Msa0270680 | Msa0413170 | 0.802768 | 4.797001e-49 | -8.615850e-47 |
| Msa0270680 | Msa0415820 | 0.815466 | 9.112573e-52 | -8.615850e-47 |
| Msa0270680 | Msa0421750 | 0.843928 | 1.036275e-58 | -8.615850e-47 |
| Msa0270680 | Msa0461550 | 0.807267 | 5.495079e-50 | -8.615850e-47 |
| Msa0270680 | Msa0466520 | 0.803890 | 2.809226e-49 | -8.615850e-47 |
| Msa0270680 | Msa0467690 | 0.838533 | 2.717900e-57 | -8.615850e-47 |
| Msa0270680 | Msa0506880 | 0.835682 | 1.455618e-56 | -8.615850e-47 |
| Msa0270680 | Msa0507810 | 0.814586 | 1.428682e-51 | -8.615850e-47 |
| Msa0270680 | Msa0507820 | 0.808540 | 2.945331e-50 | -8.615850e-47 |
| Msa0270680 | Msa0507920 | 0.809742 | 1.627986e-50 | -8.615850e-47 |
| Msa0270680 | Msa0514020 | 0.837526 | 4.935708e-57 | -8.615850e-47 |
| Msa0270680 | Msa0527850 | 0.807471 | 4.973276e-50 | -8.615850e-47 |
| Msa0270680 | Msa0544410 | 0.801591 | 8.376594e-49 | -8.615850e-47 |
| Msa0270680 | Msa0554300 | 0.842108 | 3.161790e-58 | -8.615850e-47 |
| Msa0270680 | Msa0561560 | 0.825420 | 4.732759e-54 | -8.615850e-47 |
| Msa0270680 | Msa0572830 | 0.832072 | 1.164504e-55 | -8.615850e-47 |
| Msa0270680 | Msa0577280 | 0.814204 | 1.735055e-51 | -8.615850e-47 |
| Msa0270680 | Msa0577330 | 0.818369 | 2.032051e-52 | -8.615850e-47 |
| Msa0270680 | Msa0582460 | 0.808291 | 3.328955e-50 | -8.615850e-47 |
| Msa0270680 | Msa0586200 | 0.806671 | 7.345266e-50 | -8.615850e-47 |
| Msa0270680 | Msa0608350 | 0.815670 | 8.207325e-52 | -8.615850e-47 |
| Msa0270680 | Msa0615630 | 0.829075 | 6.303338e-55 | -8.615850e-47 |
| Msa0270680 | Msa0620500 | 0.831201 | 1.909372e-55 | -8.615850e-47 |
| Msa0270680 | Msa0622920 | 0.818991 | 1.468040e-52 | -8.615850e-47 |
| Msa0270680 | Msa0647440 | 0.810486 | 1.125390e-50 | -8.615850e-47 |
| Msa0270680 | Msa0648760 | 0.833875 | 4.147883e-56 | -8.615850e-47 |
| Msa0270680 | Msa0654740 | 0.814612 | 1.410207e-51 | -8.615850e-47 |
| Msa0270680 | Msa0690320 | 0.809143 | 2.189023e-50 | -8.615850e-47 |
| Msa0270680 | Msa0691270 | 0.828527 | 8.558051e-55 | -8.615850e-47 |
| Msa0270680 | Msa0698730 | 0.801810 | 7.553241e-49 | -8.615850e-47 |
| Msa0270680 | Msa0720280 | 0.822476 | 2.321511e-53 | -8.615850e-47 |
| Msa0270680 | Msa0790630 | 0.998009 | 5.140694e-254 | -8.615850e-47 |
| Msa0270680 | Msa0803140 | 0.821944 | 3.083321e-53 | -8.615850e-47 |
| Msa0270680 | Msa0816080 | 0.814353 | 1.608459e-51 | -8.615850e-47 |
| Msa0270680 | Msa0841500 | 0.822575 | 2.201447e-53 | -8.615850e-47 |
| Msa0270680 | Msa1076020 | 0.822021 | 2.959785e-53 | -8.615850e-47 |
| Msa0270680 | Msa1078860 | 0.806419 | 8.303857e-50 | -8.615850e-47 |
| Msa0270680 | Msa1082380 | 0.821951 | 3.072677e-53 | -8.615850e-47 |
| Msa0270680 | Msa1119380 | 0.802226 | 6.201974e-49 | -8.615850e-47 |
| Msa0270680 | Msa1127280 | 0.822930 | 1.819863e-53 | -8.615850e-47 |
| Msa0270680 | Msa1163180 | 0.831499 | 1.612334e-55 | -8.615850e-47 |
| Msa0270680 | Msa1165480 | 0.832227 | 1.066411e-55 | -8.615850e-47 |
| Msa0270680 | Msa1166820 | 0.809456 | 1.875052e-50 | -8.615850e-47 |
| Msa0270680 | Msa1191000 | 0.815697 | 8.095428e-52 | -8.615850e-47 |
| Msa0270680 | Msa1215980 | 0.831160 | 1.954119e-55 | -8.615850e-47 |
| Msa0270680 | Msa1220030 | 0.802670 | 5.024550e-49 | -8.615850e-47 |
| Msa0270680 | Msa1254420 | 0.811409 | 7.104632e-51 | -8.615850e-47 |
| Msa0270680 | Msa1261050 | 0.803852 | 2.860235e-49 | -8.615850e-47 |
| Msa0270680 | Msa1294790 | 0.812003 | 5.274230e-51 | -8.615850e-47 |
| Msa0270680 | Msa1301820 | 0.825901 | 3.639635e-54 | -8.615850e-47 |
| Msa0270680 | Msa1339170 | 0.826112 | 3.243188e-54 | -8.615850e-47 |
| Msa0270680 | Msa1361930 | 0.840812 | 6.941213e-58 | -8.615850e-47 |
| Msa0270680 | Msa1390210 | 0.835276 | 1.843917e-56 | -8.615850e-47 |
| Msa0270680 | Msa1393560 | 0.818041 | 2.411113e-52 | -8.615850e-47 |
| Msa0270680 | Msa1406720 | 0.802140 | 6.461337e-49 | -8.615850e-47 |
| Msa0270680 | Msa1410190 | 0.817158 | 3.812504e-52 | -8.615850e-47 |
| Msa0270680 | Msa1432060 | 0.807923 | 3.987194e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270680 | MtrunA17_Chr2g0277991 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270680 | AT1G10780.2 | 64.846 | 421 | 147 | 1 | 34 | 454 | 5 | 424 | 0.0 | 583 |
| Msa0270680 | AT1G10780.1 | 65.155 | 419 | 145 | 1 | 36 | 454 | 1 | 418 | 0.0 | 582 |
Find 119 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAATGCTTGGTTTC+AGG | 0.149041 | 2_3:+1908110 | None:intergenic |
| TTATGGAACGTTTCCCATTT+AGG | 0.175370 | 2_3:+1908380 | None:intergenic |
| TGATCAAACTTATCCCTAAA+TGG | 0.192449 | 2_3:-1908394 | Msa0270680:CDS |
| CTTGAATCATTGGTAAAGTA+TGG | 0.210999 | 2_3:-1907348 | Msa0270680:CDS |
| AGAGTATACATGATTGATTT+TGG | 0.231137 | 2_3:-1907921 | Msa0270680:CDS |
| AACCAAACCTTTGATTCTTT+TGG | 0.254388 | 2_3:+1906931 | None:intergenic |
| AAATCAACAAAATCAATTTC+TGG | 0.256476 | 2_3:+1907750 | None:intergenic |
| CTGTGTATGGCCTTGCTTCA+TGG | 0.264549 | 2_3:-1908562 | Msa0270680:CDS |
| TATGGAACGTTTCCCATTTA+GGG | 0.268647 | 2_3:+1908381 | None:intergenic |
| CTTCAAGGATCCTAAGATTA+TGG | 0.284602 | 2_3:+1908363 | None:intergenic |
| GCTTCATGGCTATCACTTGC+AGG | 0.307648 | 2_3:-1908548 | Msa0270680:CDS |
| GGGAAACGTTCCATAATCTT+AGG | 0.315212 | 2_3:-1908373 | Msa0270680:CDS |
| TGAATTTGTGATTCCATGTT+TGG | 0.332405 | 2_3:-1907427 | Msa0270680:CDS |
| AGTAGCAACCTTGTCAGATT+TGG | 0.335278 | 2_3:+1908287 | None:intergenic |
| ACAACAAATGATCATTGCTT+TGG | 0.342019 | 2_3:+1906828 | None:intergenic |
| TTAGGATCCTTGAAGTTGTT+GGG | 0.351315 | 2_3:-1908355 | Msa0270680:CDS |
| TGCAGTAAATGCAATTATTC+AGG | 0.354985 | 2_3:-1908315 | Msa0270680:CDS |
| TCAAGATTATGTTACACTTT+CGG | 0.366892 | 2_3:-1906893 | Msa0270680:three_prime_UTR |
| TACAAGGCTGTAGTTGGATT+AGG | 0.380330 | 2_3:-1908136 | Msa0270680:CDS |
| CTTAGGATCCTTGAAGTTGT+TGG | 0.389083 | 2_3:-1908356 | Msa0270680:CDS |
| TTTATTGCTTGTCGATGCCT+TGG | 0.396042 | 2_3:-1906792 | Msa0270680:three_prime_UTR |
| TCTTCAAATGCTTGGTTTCA+GGG | 0.396771 | 2_3:+1908111 | None:intergenic |
| CAACAAATGATCATTGCTTT+GGG | 0.397588 | 2_3:+1906829 | None:intergenic |
| AATGAGCACTCTTGAATCAT+TGG | 0.400416 | 2_3:-1907358 | Msa0270680:CDS |
| CCAATGCAATCCAACTTTGA+TGG | 0.404251 | 2_3:+1908458 | None:intergenic |
| TACTGCCCTTTCTCTGTGTA+TGG | 0.406508 | 2_3:-1908575 | Msa0270680:CDS |
| TCTTGAATAAGCTTGATTGT+AGG | 0.409281 | 2_3:+1906960 | None:intergenic |
| TGAAAGATTCTTCAAATGCT+TGG | 0.409351 | 2_3:+1908103 | None:intergenic |
| CTCTTGCCCCAACAACTTCA+AGG | 0.412272 | 2_3:+1908348 | None:intergenic |
| TTATGTTACACTTTCGGAAA+AGG | 0.412378 | 2_3:-1906887 | Msa0270680:three_prime_UTR |
| AAGGCATCGACAAGCAATAA+AGG | 0.420147 | 2_3:+1906794 | None:intergenic |
| GACCAAAAGAATCAAAGGTT+TGG | 0.420514 | 2_3:-1906933 | Msa0270680:three_prime_UTR |
| GATCAAACTTATCCCTAAAT+GGG | 0.424364 | 2_3:-1908393 | Msa0270680:CDS |
| TCTTGGAAATTTATGCTACA+TGG | 0.426045 | 2_3:-1906991 | Msa0270680:three_prime_UTR |
| ACAAGGCTGTAGTTGGATTA+GGG | 0.427712 | 2_3:-1908135 | Msa0270680:CDS |
| CATTCGACTACCTGCACTGT+TGG | 0.430763 | 2_3:+1908076 | None:intergenic |
| ACAAAATCAATTTCTGGAAA+GGG | 0.432172 | 2_3:+1907756 | None:intergenic |
| TATCAAGATTCTTCAGATGA+AGG | 0.439513 | 2_3:-1907304 | Msa0270680:CDS |
| TATGTTACACTTTCGGAAAA+GGG | 0.440873 | 2_3:-1906886 | Msa0270680:three_prime_UTR |
| AACAAAATCAATTTCTGGAA+AGG | 0.445993 | 2_3:+1907755 | None:intergenic |
| TTATTGCTTGTCGATGCCTT+GGG | 0.450150 | 2_3:-1906791 | Msa0270680:three_prime_UTR |
| CACGGTGCATGTATCTGAAC+CGG | 0.452753 | 2_3:+1907241 | None:intergenic |
| TATATGAAGGTTGAATTCAC+CGG | 0.457387 | 2_3:-1907798 | Msa0270680:CDS |
| ACATGAAAGCCCATCAAAGT+TGG | 0.466038 | 2_3:-1908468 | Msa0270680:CDS |
| GAACGATGATAGTATTACTT+TGG | 0.468034 | 2_3:+1910382 | None:intergenic |
| ATATCAAACTTGCGCAGCTT+GGG | 0.468187 | 2_3:+1907714 | None:intergenic |
| CTGGCATAGTGCTGCAAACA+TGG | 0.469002 | 2_3:+1907683 | None:intergenic |
| GCAAGGCCATACACAGAGAA+AGG | 0.474113 | 2_3:+1908569 | None:intergenic |
| TACAATCAAGCTTATTCAAG+AGG | 0.477254 | 2_3:-1906958 | Msa0270680:three_prime_UTR |
| ATGTGGAAACTCTAAAATTG+TGG | 0.481641 | 2_3:-1908424 | Msa0270680:CDS |
| AGGTCCGTCTCTCTCTCATC+TGG | 0.487819 | 2_3:-1908528 | Msa0270680:CDS |
| GATATCAAACTTGCGCAGCT+TGG | 0.490212 | 2_3:+1907713 | None:intergenic |
| CTCTCATCTGGAGCTTCGAA+TGG | 0.496250 | 2_3:-1908516 | Msa0270680:CDS |
| TTATCTAATTCAGAGAATGA+AGG | 0.497659 | 2_3:-1907059 | Msa0270680:intron |
| CGATGACTTCCTTGCAAAGA+TGG | 0.498978 | 2_3:-1906855 | Msa0270680:three_prime_UTR |
| TCGAGGTACAAGGCTGTAGT+TGG | 0.501402 | 2_3:-1908142 | Msa0270680:CDS |
| ATGTACTGAAGTATGACATC+AGG | 0.505612 | 2_3:+1908794 | None:intergenic |
| ATCAGCCGTTGAGAGATTAG+AGG | 0.507988 | 2_3:-1908609 | Msa0270680:CDS |
| CTTTCAATTTCCAACAGTGC+AGG | 0.508430 | 2_3:-1908086 | Msa0270680:intron |
| AATAAGCTTGATTGTAGGCA+TGG | 0.511461 | 2_3:+1906965 | None:intergenic |
| CAACCTTGTCAGATTTGGAC+AGG | 0.511798 | 2_3:+1908292 | None:intergenic |
| CAATGCAATCCAACTTTGAT+GGG | 0.512313 | 2_3:+1908459 | None:intergenic |
| CCATCAAAGTTGGATTGCAT+TGG | 0.513791 | 2_3:-1908458 | Msa0270680:CDS |
| CAAGGCCATACACAGAGAAA+GGG | 0.514970 | 2_3:+1908570 | None:intergenic |
| TGACATCATTGTGAAAAGAA+TGG | 0.515415 | 2_3:-1908633 | Msa0270680:CDS |
| AACAAGACAAAGAGAAACTA+GGG | 0.515915 | 2_3:+1906746 | None:intergenic |
| ATCAAGATTCTTCAGATGAA+GGG | 0.518042 | 2_3:-1907303 | Msa0270680:CDS |
| CTGCGCAAGTTTGATATCCA+TGG | 0.520959 | 2_3:-1907708 | Msa0270680:CDS |
| AGTACAGTAAAACAATGTCT+TGG | 0.524086 | 2_3:-1907008 | Msa0270680:three_prime_UTR |
| TATCTAATTCAGAGAATGAA+GGG | 0.524169 | 2_3:-1907058 | Msa0270680:intron |
| CCCTGGAGTTTCTGTCAATG+AGG | 0.528486 | 2_3:-1907887 | Msa0270680:CDS |
| CCCTCATTGACAGAAACTCC+AGG | 0.531655 | 2_3:+1907886 | None:intergenic |
| CTGACAAGGTTGCTACTGCT+TGG | 0.532871 | 2_3:-1908281 | Msa0270680:CDS |
| TGTGGAAACTCTAAAATTGT+GGG | 0.532904 | 2_3:-1908423 | Msa0270680:CDS |
| TGTGATTCCATGTTTGGAGG+AGG | 0.535055 | 2_3:-1907421 | Msa0270680:CDS |
| TTGAATCATTGGTAAAGTAT+GGG | 0.539200 | 2_3:-1907347 | Msa0270680:CDS |
| AAACAAGACAAAGAGAAACT+AGG | 0.551859 | 2_3:+1906745 | None:intergenic |
| TTGCAAGGAAGTCATCGCAT+TGG | 0.553807 | 2_3:+1906861 | None:intergenic |
| AGGGAGACCAAAAGAATCAA+AGG | 0.556544 | 2_3:-1906938 | Msa0270680:three_prime_UTR |
| TAGGATCCTTGAAGTTGTTG+GGG | 0.559049 | 2_3:-1908354 | Msa0270680:CDS |
| TGTGAAACATCTTTATATGA+AGG | 0.559278 | 2_3:-1907811 | Msa0270680:CDS |
| GCAATTGTGTTTCTAAGCGA+TGG | 0.559701 | 2_3:-1908733 | Msa0270680:CDS |
| ATGAAGACCTCCTCCAAACA+TGG | 0.559835 | 2_3:+1907414 | None:intergenic |
| ATTGAATCTCTCGAGGTACA+AGG | 0.560371 | 2_3:-1908152 | Msa0270680:CDS |
| CCTGGAGTTTCTGTCAATGA+GGG | 0.562266 | 2_3:-1907886 | Msa0270680:CDS |
| CAAACTTGCGCAGCTTGGGA+TGG | 0.564636 | 2_3:+1907718 | None:intergenic |
| TTGCTACTGCTTGGATGTGA+AGG | 0.570826 | 2_3:-1908272 | Msa0270680:CDS |
| GTGCTGCAAACATGGCTCCA+TGG | 0.570847 | 2_3:+1907691 | None:intergenic |
| ACAGAAACTCCAGGGATGCA+AGG | 0.571452 | 2_3:+1907895 | None:intergenic |
| ATATGAAGGTTGAATTCACC+GGG | 0.576078 | 2_3:-1907797 | Msa0270680:CDS |
| GCAGGTTGATCGAAATTGAT+CGG | 0.581191 | 2_3:+1908246 | None:intergenic |
| ATATTGTCACATGTCAGTAA+TGG | 0.592308 | 2_3:-1908773 | Msa0270680:CDS |
| ATATCTTCTAAGTCAACCAC+TGG | 0.594318 | 2_3:-1910356 | Msa0270680:intron |
| GAGCTTCGAATGGACAACCT+TGG | 0.594522 | 2_3:-1908506 | Msa0270680:CDS |
| ATTCTATTCGAATTATCCCA+CGG | 0.597758 | 2_3:+1907223 | None:intergenic |
| GTATAATCTCATTATCGCCA+AGG | 0.600599 | 2_3:+1908489 | None:intergenic |
| GGCAGAGATTCGATTTCTGT+AGG | 0.601489 | 2_3:+1908815 | None:intergenic |
| TTGAAGAGCATCATAGTCCC+CGG | 0.602248 | 2_3:+1907779 | None:intergenic |
| TTTGGGCACCCATCTTTGCA+AGG | 0.608811 | 2_3:+1906846 | None:intergenic |
| ATTTGTGATTCCATGTTTGG+AGG | 0.609528 | 2_3:-1907424 | Msa0270680:CDS |
| CCCTAAAATTGAATCTCTCG+AGG | 0.610186 | 2_3:-1908159 | Msa0270680:CDS |
| AGTTGTTGGGGCAAGAGTCG+AGG | 0.613896 | 2_3:-1908342 | Msa0270680:CDS |
| CAAGTGATAGCCATGAAGCA+AGG | 0.624718 | 2_3:+1908552 | None:intergenic |
| GGTTCAGATACATGCACCGT+GGG | 0.628609 | 2_3:-1907239 | Msa0270680:CDS |
| ACAATCAAGCTTATTCAAGA+GGG | 0.630838 | 2_3:-1906957 | Msa0270680:three_prime_UTR |
| CTGAAGAATCTTGATAACCA+TGG | 0.631753 | 2_3:+1907311 | None:intergenic |
| AGCTCCAGATGAGAGAGAGA+CGG | 0.634676 | 2_3:+1908524 | None:intergenic |
| CTGGAGTTTCTGTCAATGAG+GGG | 0.644439 | 2_3:-1907885 | Msa0270680:CDS |
| GATGACTTCCTTGCAAAGAT+GGG | 0.646616 | 2_3:-1906854 | Msa0270680:three_prime_UTR |
| TAGCTCCTCTAATCTCTCAA+CGG | 0.648817 | 2_3:+1908604 | None:intergenic |
| TGGAGTTTCTGTCAATGAGG+GGG | 0.656210 | 2_3:-1907884 | Msa0270680:CDS |
| CCTCATTGACAGAAACTCCA+GGG | 0.657818 | 2_3:+1907887 | None:intergenic |
| AATTGCAATATGCAACATCA+CGG | 0.658583 | 2_3:+1908750 | None:intergenic |
| AGGCCTGTCCAAATCTGACA+AGG | 0.667331 | 2_3:-1908295 | Msa0270680:CDS |
| AGAGATTCGATTTCTGTAGG+CGG | 0.681192 | 2_3:+1908818 | None:intergenic |
| CATTGGTGCAGCAGTCAATG+TGG | 0.696850 | 2_3:-1908441 | Msa0270680:CDS |
| CGGTTCAGATACATGCACCG+TGG | 0.706295 | 2_3:-1907240 | Msa0270680:CDS |
| GTGGAAACTCTAAAATTGTG+GGG | 0.713865 | 2_3:-1908422 | Msa0270680:CDS |
| TATGAAGGTTGAATTCACCG+GGG | 0.788676 | 2_3:-1907796 | Msa0270680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAAATGAAAATATTTTA+CGG | + | chr2_3:1907282-1907301 | None:intergenic | 10.0% |
| !! | AAATATGTGAAGTTTATTTA+TGG | + | chr2_3:1907317-1907336 | None:intergenic | 15.0% |
| !!! | AATCCTAATGTTGATTTATA+AGG | + | chr2_3:1906930-1906949 | None:intergenic | 20.0% |
| !!! | AAAATGAAGATCTGAAATTA+GGG | + | chr2_3:1907400-1907419 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTGAATTCAGATT+TGG | - | chr2_3:1907742-1907761 | Msa0270680:CDS | 20.0% |
| !! | TTACTCATATATTGCTAATT+TGG | - | chr2_3:1907958-1907977 | Msa0270680:intron | 20.0% |
| !! | TTGTTTAAGTACAAAAGAAT+TGG | - | chr2_3:1908018-1908037 | Msa0270680:intron | 20.0% |
| !! | TGTTTAAGTACAAAAGAATT+GGG | - | chr2_3:1908019-1908038 | Msa0270680:intron | 20.0% |
| !! | CTATTTGTATATTGCAAATT+TGG | - | chr2_3:1908187-1908206 | Msa0270680:CDS | 20.0% |
| !! | AAATCAACAAAATCAATTTC+TGG | + | chr2_3:1909352-1909371 | None:intergenic | 20.0% |
| !! | ATATTATAACCATGATTTCA+AGG | - | chr2_3:1909497-1909516 | Msa0270680:intron | 20.0% |
| !!! | AAGATATCCATTTATTTTAC+AGG | - | chr2_3:1909642-1909661 | Msa0270680:intron | 20.0% |
| !!! | AATGTTGATTTATAAGGTGT+TGG | + | chr2_3:1906924-1906943 | None:intergenic | 25.0% |
| ! | ACACCTTATAAATCAACATT+AGG | - | chr2_3:1906924-1906943 | Msa0270680:three_prime_UTR | 25.0% |
| !! | TCTTTTCCATAAAAAATGAC+CGG | - | chr2_3:1907136-1907155 | Msa0270680:intron | 25.0% |
| !! | ATGAAAATATTTTACGGTGA+AGG | + | chr2_3:1907276-1907295 | None:intergenic | 25.0% |
| !! | GAAAATGAAGATCTGAAATT+AGG | + | chr2_3:1907401-1907420 | None:intergenic | 25.0% |
| ! | TATAGTGCTTAGATCTTAAT+TGG | - | chr2_3:1907585-1907604 | Msa0270680:intron | 25.0% |
| ! | ATAGTGCTTAGATCTTAATT+GGG | - | chr2_3:1907586-1907605 | Msa0270680:intron | 25.0% |
| ! | AATAAAACCTAGATTGGAAA+AGG | + | chr2_3:1907647-1907666 | None:intergenic | 25.0% |
| ! | GTGATAATTAAGATAGTTAG+AGG | - | chr2_3:1907827-1907846 | Msa0270680:CDS | 25.0% |
| !! | TGTTAGAGTAATTTTATTCG+AGG | - | chr2_3:1907871-1907890 | Msa0270680:CDS | 25.0% |
| ! | TGTACTTAAACAATACTAAC+CGG | + | chr2_3:1908011-1908030 | None:intergenic | 25.0% |
| ! | AAAGAAAATTGAGCTTACAA+AGG | + | chr2_3:1909133-1909152 | None:intergenic | 25.0% |
| !!! | AGAGTATACATGATTGATTT+TGG | - | chr2_3:1909178-1909197 | Msa0270680:intron | 25.0% |
| ! | TGTGAAACATCTTTATATGA+AGG | - | chr2_3:1909288-1909307 | Msa0270680:intron | 25.0% |
| !! | ACAAAATCAATTTCTGGAAA+GGG | + | chr2_3:1909346-1909365 | None:intergenic | 25.0% |
| !! | AACAAAATCAATTTCTGGAA+AGG | + | chr2_3:1909347-1909366 | None:intergenic | 25.0% |
| ! | GAATCAACCTGTAAAATAAA+TGG | + | chr2_3:1909652-1909671 | None:intergenic | 25.0% |
| !! | ATTTTCTGTTCAGCATTTAA+TGG | + | chr2_3:1909724-1909743 | None:intergenic | 25.0% |
| ! | TTGAATCATTGGTAAAGTAT+GGG | - | chr2_3:1909752-1909771 | Msa0270680:intron | 25.0% |
| ! | TAAAGTATGGGAAAAATCTA+AGG | - | chr2_3:1909764-1909783 | Msa0270680:intron | 25.0% |
| !!! | ATTTTTTTGATGAGATTTGC+CGG | - | chr2_3:1909839-1909858 | Msa0270680:intron | 25.0% |
| !! | TTGATGCAATTTTTAACACA+GGG | - | chr2_3:1909904-1909923 | Msa0270680:intron | 25.0% |
| !!! | TGATAATTAGTTCACTTTTG+TGG | - | chr2_3:1909967-1909986 | Msa0270680:intron | 25.0% |
| ! | TTATCTAATTCAGAGAATGA+AGG | - | chr2_3:1910040-1910059 | Msa0270680:intron | 25.0% |
| ! | TATCTAATTCAGAGAATGAA+GGG | - | chr2_3:1910041-1910060 | Msa0270680:intron | 25.0% |
| ! | TCAAGATTATGTTACACTTT+CGG | - | chr2_3:1910206-1910225 | Msa0270680:intron | 25.0% |
| GAACGATGATAGTATTACTT+TGG | + | chr2_3:1906720-1906739 | None:intergenic | 30.0% | |
| GAAAGAGTTTAATATACCAG+TGG | + | chr2_3:1906762-1906781 | None:intergenic | 30.0% | |
| !! | AAACTTATTTTCACTCTCCA+AGG | - | chr2_3:1906817-1906836 | Msa0270680:three_prime_UTR | 30.0% |
| !! | AACTTATTTTCACTCTCCAA+GGG | - | chr2_3:1906818-1906837 | Msa0270680:three_prime_UTR | 30.0% |
| GTTTGAATTGCGTAAGATTT+GGG | + | chr2_3:1906957-1906976 | None:intergenic | 30.0% | |
| AGTTTGAATTGCGTAAGATT+TGG | + | chr2_3:1906958-1906977 | None:intergenic | 30.0% | |
| !! | AAATCTCTAAAACGTTAACG+CGG | - | chr2_3:1907227-1907246 | Msa0270680:CDS | 30.0% |
| ! | AAAATATTTTACGGTGAAGG+AGG | + | chr2_3:1907273-1907292 | None:intergenic | 30.0% |
| CAGCTAAGTTAAAGCAAAAA+GGG | + | chr2_3:1907475-1907494 | None:intergenic | 30.0% | |
| GCAAAGAATAAAACCTAGAT+TGG | + | chr2_3:1907653-1907672 | None:intergenic | 30.0% | |
| ! | GAGGGTAATTTGAAGTAAAT+GGG | - | chr2_3:1907785-1907804 | Msa0270680:CDS | 30.0% |
| AAACAATACTAACCGGTATA+TGG | + | chr2_3:1908004-1908023 | None:intergenic | 30.0% | |
| ! | GTATGATTTGAAGTCGAAAT+CGG | + | chr2_3:1908166-1908185 | None:intergenic | 30.0% |
| ATATTGTCACATGTCAGTAA+TGG | - | chr2_3:1908326-1908345 | Msa0270680:CDS | 30.0% | |
| AATTGCAATATGCAACATCA+CGG | + | chr2_3:1908352-1908371 | None:intergenic | 30.0% | |
| ! | CAATGATGTCAGAATTTTCA+CGG | + | chr2_3:1908457-1908476 | None:intergenic | 30.0% |
| TGACATCATTGTGAAAAGAA+TGG | - | chr2_3:1908466-1908485 | Msa0270680:CDS | 30.0% | |
| !! | ATGTGGAAACTCTAAAATTG+TGG | - | chr2_3:1908675-1908694 | Msa0270680:CDS | 30.0% |
| !! | TGTGGAAACTCTAAAATTGT+GGG | - | chr2_3:1908676-1908695 | Msa0270680:CDS | 30.0% |
| TGATCAAACTTATCCCTAAA+TGG | - | chr2_3:1908705-1908724 | Msa0270680:CDS | 30.0% | |
| GATCAAACTTATCCCTAAAT+GGG | - | chr2_3:1908706-1908725 | Msa0270680:CDS | 30.0% | |
| TGCAGTAAATGCAATTATTC+AGG | - | chr2_3:1908784-1908803 | Msa0270680:CDS | 30.0% | |
| TGAAAGATTCTTCAAATGCT+TGG | + | chr2_3:1908999-1909018 | None:intergenic | 30.0% | |
| GGAGAGCAATAAAAAAACAA+AGG | + | chr2_3:1909086-1909105 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTATTGCTCTCC+TGG | - | chr2_3:1909086-1909105 | Msa0270680:intron | 30.0% |
| TCCTGGAATTTACTAAAAAG+TGG | - | chr2_3:1909103-1909122 | Msa0270680:intron | 30.0% | |
| !!! | ACCACTTTTTAGTAAATTCC+AGG | + | chr2_3:1909107-1909126 | None:intergenic | 30.0% |
| ! | TTTACTTGTTAATTGCTTGC+AGG | - | chr2_3:1909154-1909173 | Msa0270680:intron | 30.0% |
| ! | TTACTTGTTAATTGCTTGCA+GGG | - | chr2_3:1909155-1909174 | Msa0270680:intron | 30.0% |
| TATATGAAGGTTGAATTCAC+CGG | - | chr2_3:1909301-1909320 | Msa0270680:intron | 30.0% | |
| TGAATTTGTGATTCCATGTT+TGG | - | chr2_3:1909672-1909691 | Msa0270680:intron | 30.0% | |
| CTTGAATCATTGGTAAAGTA+TGG | - | chr2_3:1909751-1909770 | Msa0270680:intron | 30.0% | |
| TATCAAGATTCTTCAGATGA+AGG | - | chr2_3:1909795-1909814 | Msa0270680:intron | 30.0% | |
| ATCAAGATTCTTCAGATGAA+GGG | - | chr2_3:1909796-1909815 | Msa0270680:intron | 30.0% | |
| ATTCTATTCGAATTATCCCA+CGG | + | chr2_3:1909879-1909898 | None:intergenic | 30.0% | |
| ! | CTTGATGCAATTTTTAACAC+AGG | - | chr2_3:1909903-1909922 | Msa0270680:intron | 30.0% |
| ! | ACTGTACTTTTGACAATCAT+GGG | + | chr2_3:1910079-1910098 | None:intergenic | 30.0% |
| ! | TACTGTACTTTTGACAATCA+TGG | + | chr2_3:1910080-1910099 | None:intergenic | 30.0% |
| AGTACAGTAAAACAATGTCT+TGG | - | chr2_3:1910091-1910110 | Msa0270680:intron | 30.0% | |
| TCTTGGAAATTTATGCTACA+TGG | - | chr2_3:1910108-1910127 | Msa0270680:intron | 30.0% | |
| TCTTGAATAAGCTTGATTGT+AGG | + | chr2_3:1910142-1910161 | None:intergenic | 30.0% | |
| TACAATCAAGCTTATTCAAG+AGG | - | chr2_3:1910141-1910160 | Msa0270680:intron | 30.0% | |
| ACAATCAAGCTTATTCAAGA+GGG | - | chr2_3:1910142-1910161 | Msa0270680:intron | 30.0% | |
| ! | AACCAAACCTTTGATTCTTT+TGG | + | chr2_3:1910171-1910190 | None:intergenic | 30.0% |
| TTATGTTACACTTTCGGAAA+AGG | - | chr2_3:1910212-1910231 | Msa0270680:intron | 30.0% | |
| TATGTTACACTTTCGGAAAA+GGG | - | chr2_3:1910213-1910232 | Msa0270680:intron | 30.0% | |
| CAACAAATGATCATTGCTTT+GGG | + | chr2_3:1910273-1910292 | None:intergenic | 30.0% | |
| ACAACAAATGATCATTGCTT+TGG | + | chr2_3:1910274-1910293 | None:intergenic | 30.0% | |
| AACAAGACAAAGAGAAACTA+GGG | + | chr2_3:1910356-1910375 | None:intergenic | 30.0% | |
| AAACAAGACAAAGAGAAACT+AGG | + | chr2_3:1910357-1910376 | None:intergenic | 30.0% | |
| ATATCTTCTAAGTCAACCAC+TGG | - | chr2_3:1906743-1906762 | Msa0270680:three_prime_UTR | 35.0% | |
| !! | GTTGATTTATAAGGTGTTGG+TGG | + | chr2_3:1906921-1906940 | None:intergenic | 35.0% |
| TATTTATCACTCGGTCTAGT+TGG | + | chr2_3:1906994-1907013 | None:intergenic | 35.0% | |
| GAACAGTGGTATTTATCACT+CGG | + | chr2_3:1907003-1907022 | None:intergenic | 35.0% | |
| !!! | AGTGTGTAAGTTTTGAACAG+TGG | + | chr2_3:1907017-1907036 | None:intergenic | 35.0% |
| TTTCCATAAAAAATGACCGG+TGG | - | chr2_3:1907139-1907158 | Msa0270680:intron | 35.0% | |
| !! | AATCTCTAAAACGTTAACGC+GGG | - | chr2_3:1907228-1907247 | Msa0270680:CDS | 35.0% |
| ! | GAAGATCTGAAATTAGGGTT+AGG | + | chr2_3:1907395-1907414 | None:intergenic | 35.0% |
| CCAGCTAAGTTAAAGCAAAA+AGG | + | chr2_3:1907476-1907495 | None:intergenic | 35.0% | |
| !! | CCTTTTTGCTTTAACTTAGC+TGG | - | chr2_3:1907473-1907492 | Msa0270680:intron | 35.0% |
| !! | TGCATCCAATGTTCAAGTTT+TGG | - | chr2_3:1907538-1907557 | Msa0270680:intron | 35.0% |
| !! | GCATCCAATGTTCAAGTTTT+GGG | - | chr2_3:1907539-1907558 | Msa0270680:intron | 35.0% |
| TGAACCCAAAACTTGAACAT+TGG | + | chr2_3:1907546-1907565 | None:intergenic | 35.0% | |
| ! | AAACTCACCTTTTCCAATCT+AGG | - | chr2_3:1907637-1907656 | Msa0270680:intron | 35.0% |
| TTGAATTCAGATTTGGCGTT+TGG | - | chr2_3:1907749-1907768 | Msa0270680:CDS | 35.0% | |
| TGAATTCAGATTTGGCGTTT+GGG | - | chr2_3:1907750-1907769 | Msa0270680:CDS | 35.0% | |
| ! | GGAGGGTAATTTGAAGTAAA+TGG | - | chr2_3:1907784-1907803 | Msa0270680:CDS | 35.0% |
| TAAATGGGAGCTAAACTCAA+AGG | - | chr2_3:1907800-1907819 | Msa0270680:CDS | 35.0% | |
| AAATGGGAGCTAAACTCAAA+GGG | - | chr2_3:1907801-1907820 | Msa0270680:CDS | 35.0% | |
| TATTTGATCCGTCCATATAC+CGG | - | chr2_3:1907989-1908008 | Msa0270680:intron | 35.0% | |
| AATACTAACCGGTATATGGA+CGG | + | chr2_3:1908000-1908019 | None:intergenic | 35.0% | |
| ATGTACTGAAGTATGACATC+AGG | + | chr2_3:1908308-1908327 | None:intergenic | 35.0% | |
| GTATAATCTCATTATCGCCA+AGG | + | chr2_3:1908613-1908632 | None:intergenic | 35.0% | |
| CAATGCAATCCAACTTTGAT+GGG | + | chr2_3:1908643-1908662 | None:intergenic | 35.0% | |
| !! | GTGGAAACTCTAAAATTGTG+GGG | - | chr2_3:1908677-1908696 | Msa0270680:CDS | 35.0% |
| TATGGAACGTTTCCCATTTA+GGG | + | chr2_3:1908721-1908740 | None:intergenic | 35.0% | |
| TTATGGAACGTTTCCCATTT+AGG | + | chr2_3:1908722-1908741 | None:intergenic | 35.0% | |
| CTTCAAGGATCCTAAGATTA+TGG | + | chr2_3:1908739-1908758 | None:intergenic | 35.0% | |
| TTAGGATCCTTGAAGTTGTT+GGG | - | chr2_3:1908744-1908763 | Msa0270680:CDS | 35.0% | |
| ! | AAGCTGGATTTTTATGGTCT+TGG | - | chr2_3:1908893-1908912 | Msa0270680:intron | 35.0% |
| ! | AGCTGGATTTTTATGGTCTT+GGG | - | chr2_3:1908894-1908913 | Msa0270680:intron | 35.0% |
| ! | CTCGAGAGATTCAATTTTAG+GGG | + | chr2_3:1908942-1908961 | None:intergenic | 35.0% |
| ! | CCTCGAGAGATTCAATTTTA+GGG | + | chr2_3:1908943-1908962 | None:intergenic | 35.0% |
| ! | ACCTCGAGAGATTCAATTTT+AGG | + | chr2_3:1908944-1908963 | None:intergenic | 35.0% |
| TCTTCAAATGCTTGGTTTCA+GGG | + | chr2_3:1908991-1909010 | None:intergenic | 35.0% | |
| TTCTTCAAATGCTTGGTTTC+AGG | + | chr2_3:1908992-1909011 | None:intergenic | 35.0% | |
| ATATGAAGGTTGAATTCACC+GGG | - | chr2_3:1909302-1909321 | Msa0270680:intron | 35.0% | |
| !! | CATGTTTTAGACTGTTCTTC+TGG | + | chr2_3:1909438-1909457 | None:intergenic | 35.0% |
| ! | AAGCTACACACTATAGCTTT+TGG | - | chr2_3:1909520-1909539 | Msa0270680:intron | 35.0% |
| ! | TACACACTATAGCTTTTGGA+AGG | - | chr2_3:1909524-1909543 | Msa0270680:intron | 35.0% |
| ATTTGTGATTCCATGTTTGG+AGG | - | chr2_3:1909675-1909694 | Msa0270680:intron | 35.0% | |
| AATGAGCACTCTTGAATCAT+TGG | - | chr2_3:1909741-1909760 | Msa0270680:intron | 35.0% | |
| ! | CTGAAGAATCTTGATAACCA+TGG | + | chr2_3:1909791-1909810 | None:intergenic | 35.0% |
| !! | TTCGTACTGATTTCCAGTTA+CGG | - | chr2_3:1909930-1909949 | Msa0270680:intron | 35.0% |
| ! | ACTTTTGACAATCATGGGAA+AGG | + | chr2_3:1910074-1910093 | None:intergenic | 35.0% |
| AATAAGCTTGATTGTAGGCA+TGG | + | chr2_3:1910137-1910156 | None:intergenic | 35.0% | |
| GACCAAAAGAATCAAAGGTT+TGG | - | chr2_3:1910166-1910185 | Msa0270680:intron | 35.0% | |
| TGTGCAATCGAGATTCAACT+AGG | + | chr2_3:1906858-1906877 | None:intergenic | 40.0% | |
| !!! | CTTCCACCGGTCATTTTTTA+TGG | + | chr2_3:1907145-1907164 | None:intergenic | 40.0% |
| ! | TATTTTACGGTGAAGGAGGA+GGG | + | chr2_3:1907269-1907288 | None:intergenic | 40.0% |
| ! | ATATTTTACGGTGAAGGAGG+AGG | + | chr2_3:1907270-1907289 | None:intergenic | 40.0% |
| GAATTCAGATTTGGCGTTTG+GGG | - | chr2_3:1907751-1907770 | Msa0270680:CDS | 40.0% | |
| AATTCAGATTTGGCGTTTGG+GGG | - | chr2_3:1907752-1907771 | Msa0270680:CDS | 40.0% | |
| !! | TTTGGGGGTGTTAATTTGGA+GGG | - | chr2_3:1907767-1907786 | Msa0270680:CDS | 40.0% |
| AATTGGGAGCTAAACTGAGA+AGG | - | chr2_3:1908035-1908054 | Msa0270680:intron | 40.0% | |
| ATTGGGAGCTAAACTGAGAA+GGG | - | chr2_3:1908036-1908055 | Msa0270680:intron | 40.0% | |
| TGCGAGAGTTAGATGATTTG+AGG | - | chr2_3:1908105-1908124 | Msa0270680:CDS | 40.0% | |
| ATTCTGATGCTTGTGCATGA+CGG | - | chr2_3:1908138-1908157 | Msa0270680:CDS | 40.0% | |
| AGAGATTCGATTTCTGTAGG+CGG | + | chr2_3:1908284-1908303 | None:intergenic | 40.0% | |
| ! | GCAATTGTGTTTCTAAGCGA+TGG | - | chr2_3:1908366-1908385 | Msa0270680:CDS | 40.0% |
| ! | ATGTCAGAATTTTCACGGTG+AGG | + | chr2_3:1908452-1908471 | None:intergenic | 40.0% |
| TAGCTCCTCTAATCTCTCAA+CGG | + | chr2_3:1908498-1908517 | None:intergenic | 40.0% | |
| ACATGAAAGCCCATCAAAGT+TGG | - | chr2_3:1908631-1908650 | Msa0270680:CDS | 40.0% | |
| CCAATGCAATCCAACTTTGA+TGG | + | chr2_3:1908644-1908663 | None:intergenic | 40.0% | |
| CCATCAAAGTTGGATTGCAT+TGG | - | chr2_3:1908641-1908660 | Msa0270680:CDS | 40.0% | |
| GGGAAACGTTCCATAATCTT+AGG | - | chr2_3:1908726-1908745 | Msa0270680:CDS | 40.0% | |
| CTTAGGATCCTTGAAGTTGT+TGG | - | chr2_3:1908743-1908762 | Msa0270680:CDS | 40.0% | |
| TAGGATCCTTGAAGTTGTTG+GGG | - | chr2_3:1908745-1908764 | Msa0270680:CDS | 40.0% | |
| AGTAGCAACCTTGTCAGATT+TGG | + | chr2_3:1908815-1908834 | None:intergenic | 40.0% | |
| !! | GCAGGTTGATCGAAATTGAT+CGG | + | chr2_3:1908856-1908875 | None:intergenic | 40.0% |
| !!! | TTCGATCAACCTGCCATTTT+TGG | - | chr2_3:1908862-1908881 | Msa0270680:intron | 40.0% |
| ! | CAGTGCAAGCTGGATTTTTA+TGG | - | chr2_3:1908887-1908906 | Msa0270680:intron | 40.0% |
| !! | GAGAGATTCAATTTTAGGGG+AGG | + | chr2_3:1908939-1908958 | None:intergenic | 40.0% |
| CCCTAAAATTGAATCTCTCG+AGG | - | chr2_3:1908940-1908959 | Msa0270680:intron | 40.0% | |
| ATTGAATCTCTCGAGGTACA+AGG | - | chr2_3:1908947-1908966 | Msa0270680:intron | 40.0% | |
| TACAAGGCTGTAGTTGGATT+AGG | - | chr2_3:1908963-1908982 | Msa0270680:intron | 40.0% | |
| ACAAGGCTGTAGTTGGATTA+GGG | - | chr2_3:1908964-1908983 | Msa0270680:intron | 40.0% | |
| CTTTCAATTTCCAACAGTGC+AGG | - | chr2_3:1909013-1909032 | Msa0270680:intron | 40.0% | |
| TATGAAGGTTGAATTCACCG+GGG | - | chr2_3:1909303-1909322 | Msa0270680:intron | 40.0% | |
| ATATCAAACTTGCGCAGCTT+GGG | + | chr2_3:1909388-1909407 | None:intergenic | 40.0% | |
| GTGTAGCTTCCTTGAAATCA+TGG | + | chr2_3:1909509-1909528 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTTTCTTCGACAC+AGG | + | chr2_3:1909551-1909570 | None:intergenic | 40.0% |
| CTGTGTCGAAGAAAACAAAC+TGG | - | chr2_3:1909549-1909568 | Msa0270680:intron | 40.0% | |
| TGGGAAAAATCTAAGGACCA+TGG | - | chr2_3:1909771-1909790 | Msa0270680:intron | 40.0% | |
| AGGGAGACCAAAAGAATCAA+AGG | - | chr2_3:1910161-1910180 | Msa0270680:intron | 40.0% | |
| GATGACTTCCTTGCAAAGAT+GGG | - | chr2_3:1910245-1910264 | Msa0270680:intron | 40.0% | |
| !! | AAGGCATCGACAAGCAATAA+AGG | + | chr2_3:1910308-1910327 | None:intergenic | 40.0% |
| TTTATTGCTTGTCGATGCCT+TGG | - | chr2_3:1910307-1910326 | Msa0270680:intron | 40.0% | |
| TTATTGCTTGTCGATGCCTT+GGG | - | chr2_3:1910308-1910327 | Msa0270680:intron | 40.0% | |
| ! | GCCTTGGGCATAAGTTTTTA+AGG | - | chr2_3:1910323-1910342 | Msa0270680:intron | 40.0% |
| GCCTTAAAAACTTATGCCCA+AGG | + | chr2_3:1910327-1910346 | None:intergenic | 40.0% | |
| ! | GGTTGAACTCATTTTGCCCT+TGG | + | chr2_3:1906837-1906856 | None:intergenic | 45.0% |
| AGTGAAGTGCGCGTGTAAAA+TGG | - | chr2_3:1907168-1907187 | Msa0270680:intron | 45.0% | |
| ! | AGCTCTTGGTGTGTGTTGTT+GGG | + | chr2_3:1907367-1907386 | None:intergenic | 45.0% |
| ! | AAGCTCTTGGTGTGTGTTGT+TGG | + | chr2_3:1907368-1907387 | None:intergenic | 45.0% |
| AGGGTTAGGTTACAAGCTCT+TGG | + | chr2_3:1907381-1907400 | None:intergenic | 45.0% | |
| !! | GTTTGGGGGTGTTAATTTGG+AGG | - | chr2_3:1907766-1907785 | Msa0270680:CDS | 45.0% |
| GGCAGAGATTCGATTTCTGT+AGG | + | chr2_3:1908287-1908306 | None:intergenic | 45.0% | |
| ATCAGCCGTTGAGAGATTAG+AGG | - | chr2_3:1908490-1908509 | Msa0270680:CDS | 45.0% | |
| TACTGCCCTTTCTCTGTGTA+TGG | - | chr2_3:1908524-1908543 | Msa0270680:CDS | 45.0% | |
| CAAGGCCATACACAGAGAAA+GGG | + | chr2_3:1908532-1908551 | None:intergenic | 45.0% | |
| CAAGTGATAGCCATGAAGCA+AGG | + | chr2_3:1908550-1908569 | None:intergenic | 45.0% | |
| CAACCTTGTCAGATTTGGAC+AGG | + | chr2_3:1908810-1908829 | None:intergenic | 45.0% | |
| TTGCTACTGCTTGGATGTGA+AGG | - | chr2_3:1908827-1908846 | Msa0270680:CDS | 45.0% | |
| AGCTTGCACTGCTCCAAAAA+TGG | + | chr2_3:1908878-1908897 | None:intergenic | 45.0% | |
| !!! | ATTTTTGGAGCAGTGCAAGC+TGG | - | chr2_3:1908877-1908896 | Msa0270680:intron | 45.0% |
| !! | TTTTGGAAACCTTGCATCCC+TGG | - | chr2_3:1909195-1909214 | Msa0270680:intron | 45.0% |
| CCTCATTGACAGAAACTCCA+GGG | + | chr2_3:1909215-1909234 | None:intergenic | 45.0% | |
| CCTGGAGTTTCTGTCAATGA+GGG | - | chr2_3:1909213-1909232 | Msa0270680:intron | 45.0% | |
| CTGGAGTTTCTGTCAATGAG+GGG | - | chr2_3:1909214-1909233 | Msa0270680:intron | 45.0% | |
| TGGAGTTTCTGTCAATGAGG+GGG | - | chr2_3:1909215-1909234 | Msa0270680:intron | 45.0% | |
| !! | TTGAAGAGCATCATAGTCCC+CGG | + | chr2_3:1909323-1909342 | None:intergenic | 45.0% |
| GATATCAAACTTGCGCAGCT+TGG | + | chr2_3:1909389-1909408 | None:intergenic | 45.0% | |
| CTGCGCAAGTTTGATATCCA+TGG | - | chr2_3:1909391-1909410 | Msa0270680:intron | 45.0% | |
| TGTGATTCCATGTTTGGAGG+AGG | - | chr2_3:1909678-1909697 | Msa0270680:intron | 45.0% | |
| ATGAAGACCTCCTCCAAACA+TGG | + | chr2_3:1909688-1909707 | None:intergenic | 45.0% | |
| TTCAGAAGTCTAGCCGTAAC+TGG | + | chr2_3:1909946-1909965 | None:intergenic | 45.0% | |
| TTGCAAGGAAGTCATCGCAT+TGG | + | chr2_3:1910241-1910260 | None:intergenic | 45.0% | |
| CGATGACTTCCTTGCAAAGA+TGG | - | chr2_3:1910244-1910263 | Msa0270680:intron | 45.0% | |
| CGACTGCTGCAAAAATTGCG+AGG | + | chr2_3:1906697-1906716 | None:intergenic | 50.0% | |
| GCACTTCACTACACTTCCAC+CGG | + | chr2_3:1907158-1907177 | None:intergenic | 50.0% | |
| !! | GGCGTTTGGGGGTGTTAATT+TGG | - | chr2_3:1907763-1907782 | Msa0270680:CDS | 50.0% |
| GCAAGGCCATACACAGAGAA+AGG | + | chr2_3:1908533-1908552 | None:intergenic | 50.0% | |
| ! | CTGTGTATGGCCTTGCTTCA+TGG | - | chr2_3:1908537-1908556 | Msa0270680:CDS | 50.0% |
| GCTTCATGGCTATCACTTGC+AGG | - | chr2_3:1908551-1908570 | Msa0270680:CDS | 50.0% | |
| AGCTCCAGATGAGAGAGAGA+CGG | + | chr2_3:1908578-1908597 | None:intergenic | 50.0% | |
| ! | CTCTCATCTGGAGCTTCGAA+TGG | - | chr2_3:1908583-1908602 | Msa0270680:CDS | 50.0% |
| GAGCTTCGAATGGACAACCT+TGG | - | chr2_3:1908593-1908612 | Msa0270680:CDS | 50.0% | |
| CATTGGTGCAGCAGTCAATG+TGG | - | chr2_3:1908658-1908677 | Msa0270680:CDS | 50.0% | |
| CTCTTGCCCCAACAACTTCA+AGG | + | chr2_3:1908754-1908773 | None:intergenic | 50.0% | |
| AGGCCTGTCCAAATCTGACA+AGG | - | chr2_3:1908804-1908823 | Msa0270680:CDS | 50.0% | |
| CTGACAAGGTTGCTACTGCT+TGG | - | chr2_3:1908818-1908837 | Msa0270680:CDS | 50.0% | |
| TGCACTGCTCCAAAAATGGC+AGG | + | chr2_3:1908874-1908893 | None:intergenic | 50.0% | |
| TCGAGGTACAAGGCTGTAGT+TGG | - | chr2_3:1908957-1908976 | Msa0270680:intron | 50.0% | |
| CATTCGACTACCTGCACTGT+TGG | + | chr2_3:1909026-1909045 | None:intergenic | 50.0% | |
| ACAGAAACTCCAGGGATGCA+AGG | + | chr2_3:1909207-1909226 | None:intergenic | 50.0% | |
| CCCTGGAGTTTCTGTCAATG+AGG | - | chr2_3:1909212-1909231 | Msa0270680:intron | 50.0% | |
| CCCTCATTGACAGAAACTCC+AGG | + | chr2_3:1909216-1909235 | None:intergenic | 50.0% | |
| TGTCAATGAGGGGGATACAG+TGG | - | chr2_3:1909224-1909243 | Msa0270680:intron | 50.0% | |
| CTGGCATAGTGCTGCAAACA+TGG | + | chr2_3:1909419-1909438 | None:intergenic | 50.0% | |
| CACGGTGCATGTATCTGAAC+CGG | + | chr2_3:1909861-1909880 | None:intergenic | 50.0% | |
| GGTTCAGATACATGCACCGT+GGG | - | chr2_3:1909860-1909879 | Msa0270680:intron | 50.0% | |
| TTTGGGCACCCATCTTTGCA+AGG | + | chr2_3:1910256-1910275 | None:intergenic | 50.0% | |
| AGGCGGAGATTCGATTGCTG+TGG | + | chr2_3:1908267-1908286 | None:intergenic | 55.0% | |
| AGGTCCGTCTCTCTCTCATC+TGG | - | chr2_3:1908571-1908590 | Msa0270680:CDS | 55.0% | |
| AGTTGTTGGGGCAAGAGTCG+AGG | - | chr2_3:1908757-1908776 | Msa0270680:CDS | 55.0% | |
| TGAGGGGGATACAGTGGTGT+TGG | - | chr2_3:1909230-1909249 | Msa0270680:intron | 55.0% | |
| GAGGGGGATACAGTGGTGTT+GGG | - | chr2_3:1909231-1909250 | Msa0270680:intron | 55.0% | |
| CAAACTTGCGCAGCTTGGGA+TGG | + | chr2_3:1909384-1909403 | None:intergenic | 55.0% | |
| GTGCTGCAAACATGGCTCCA+TGG | + | chr2_3:1909411-1909430 | None:intergenic | 55.0% | |
| CGGTTCAGATACATGCACCG+TGG | - | chr2_3:1909859-1909878 | Msa0270680:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1906683 | 1910438 | 1906683 | ID=Msa0270680;Name=Msa0270680 |
| chr2_3 | mRNA | 1906683 | 1910438 | 1906683 | ID=Msa0270680-mRNA-1;Parent=Msa0270680;Name=Msa0270680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.8|0.8|0.75|0.6|5|431|454 |
| chr2_3 | exon | 1906683 | 1907068 | 1906683 | ID=Msa0270680-mRNA-1:exon:998;Parent=Msa0270680-mRNA-1 |
| chr2_3 | exon | 1907176 | 1907457 | 1907176 | ID=Msa0270680-mRNA-1:exon:997;Parent=Msa0270680-mRNA-1 |
| chr2_3 | exon | 1907665 | 1907945 | 1907665 | ID=Msa0270680-mRNA-1:exon:996;Parent=Msa0270680-mRNA-1 |
| chr2_3 | exon | 1908087 | 1908851 | 1908087 | ID=Msa0270680-mRNA-1:exon:995;Parent=Msa0270680-mRNA-1 |
| chr2_3 | exon | 1910357 | 1910438 | 1910357 | ID=Msa0270680-mRNA-1:exon:994;Parent=Msa0270680-mRNA-1 |
| chr2_3 | CDS | 1910357 | 1910438 | 1910357 | ID=Msa0270680-mRNA-1:cds;Parent=Msa0270680-mRNA-1 |
| chr2_3 | CDS | 1908087 | 1908851 | 1908087 | ID=Msa0270680-mRNA-1:cds;Parent=Msa0270680-mRNA-1 |
| chr2_3 | CDS | 1907665 | 1907945 | 1907665 | ID=Msa0270680-mRNA-1:cds;Parent=Msa0270680-mRNA-1 |
| chr2_3 | CDS | 1907221 | 1907457 | 1907221 | ID=Msa0270680-mRNA-1:cds;Parent=Msa0270680-mRNA-1 |
| chr2_3 | three_prime_UTR | 1907176 | 1907220 | 1907176 | ID=Msa0270680-mRNA-1:three_prime_utr;Parent=Msa0270680-mRNA-1 |
| chr2_3 | three_prime_UTR | 1906683 | 1907068 | 1906683 | ID=Msa0270680-mRNA-1:three_prime_utr;Parent=Msa0270680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
