Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790630 | XP_003593048.1 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790630 | sp|Q9SAC4|FB2_ARATH | 65.155 | 419 | 145 | 1 | 36 | 454 | 1 | 418 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790630 | A2Q3U4 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa0790630 | 0.825954 | 3.536231e-54 | -8.615850e-47 |
| Msa0030070 | Msa0790630 | 0.803489 | 3.402135e-49 | -8.615850e-47 |
| Msa0078130 | Msa0790630 | 0.811141 | 8.119477e-51 | -8.615850e-47 |
| Msa0090440 | Msa0790630 | 0.804703 | 1.901823e-49 | -8.615850e-47 |
| Msa0091350 | Msa0790630 | 0.813531 | 2.442348e-51 | -8.615850e-47 |
| Msa0608350 | Msa0790630 | 0.816914 | 4.325066e-52 | -8.615850e-47 |
| Msa0615630 | Msa0790630 | 0.834170 | 3.499686e-56 | -8.615850e-47 |
| Msa0620500 | Msa0790630 | 0.834549 | 2.810785e-56 | -8.615850e-47 |
| Msa0622920 | Msa0790630 | 0.821289 | 4.369996e-53 | -8.615850e-47 |
| Msa0647440 | Msa0790630 | 0.813003 | 3.189554e-51 | -8.615850e-47 |
| Msa0648760 | Msa0790630 | 0.833555 | 4.986135e-56 | -8.615850e-47 |
| Msa0654740 | Msa0790630 | 0.819065 | 1.412367e-52 | -8.615850e-47 |
| Msa0690320 | Msa0790630 | 0.811259 | 7.656819e-51 | -8.615850e-47 |
| Msa0691270 | Msa0790630 | 0.829913 | 3.944196e-55 | -8.615850e-47 |
| Msa0698730 | Msa0790630 | 0.805262 | 1.453274e-49 | -8.615850e-47 |
| Msa0707260 | Msa0790630 | 0.801566 | 8.475247e-49 | -8.615850e-47 |
| Msa0713920 | Msa0790630 | 0.800493 | 1.404580e-48 | -8.615850e-47 |
| Msa0717900 | Msa0790630 | 0.801428 | 9.045590e-49 | -8.615850e-47 |
| Msa0720280 | Msa0790630 | 0.824786 | 6.684422e-54 | -8.615850e-47 |
| Msa0790630 | Msa0803140 | 0.825108 | 5.611263e-54 | -8.615850e-47 |
| Msa0790630 | Msa0816080 | 0.817881 | 2.619949e-52 | -8.615850e-47 |
| Msa0790630 | Msa0841500 | 0.824696 | 7.018382e-54 | -8.615850e-47 |
| Msa0790630 | Msa1008670 | 0.802243 | 6.154825e-49 | -8.615850e-47 |
| Msa0790630 | Msa1076020 | 0.826370 | 2.815728e-54 | -8.615850e-47 |
| Msa0790630 | Msa1078860 | 0.810572 | 1.078566e-50 | -8.615850e-47 |
| Msa0790630 | Msa1082380 | 0.823381 | 1.428235e-53 | -8.615850e-47 |
| Msa0790630 | Msa1119380 | 0.807625 | 4.614300e-50 | -8.615850e-47 |
| Msa0790630 | Msa1127280 | 0.824586 | 7.448396e-54 | -8.615850e-47 |
| Msa0790630 | Msa1163180 | 0.835257 | 1.864150e-56 | -8.615850e-47 |
| Msa0790630 | Msa1165480 | 0.834322 | 3.204540e-56 | -8.615850e-47 |
| Msa0790630 | Msa1166820 | 0.815191 | 1.049219e-51 | -8.615850e-47 |
| Msa0790630 | Msa1191000 | 0.819488 | 1.131551e-52 | -8.615850e-47 |
| Msa0790630 | Msa1215980 | 0.834477 | 2.931055e-56 | -8.615850e-47 |
| Msa0790630 | Msa1220030 | 0.804241 | 2.374227e-49 | -8.615850e-47 |
| Msa0790630 | Msa1254420 | 0.815200 | 1.044468e-51 | -8.615850e-47 |
| Msa0790630 | Msa1261050 | 0.806182 | 9.314976e-50 | -8.615850e-47 |
| Msa0790630 | Msa1294790 | 0.815478 | 9.057611e-52 | -8.615850e-47 |
| Msa0790630 | Msa1301820 | 0.827286 | 1.701767e-54 | -8.615850e-47 |
| Msa0790630 | Msa1339170 | 0.831624 | 1.502274e-55 | -8.615850e-47 |
| Msa0790630 | Msa1361930 | 0.842011 | 3.355430e-58 | -8.615850e-47 |
| Msa0790630 | Msa1390210 | 0.838466 | 2.827458e-57 | -8.615850e-47 |
| Msa0790630 | Msa1393560 | 0.820458 | 6.787103e-53 | -8.615850e-47 |
| Msa0790630 | Msa1406720 | 0.809089 | 2.248189e-50 | -8.615850e-47 |
| Msa0790630 | Msa1410190 | 0.821450 | 4.011452e-53 | -8.615850e-47 |
| Msa0790630 | Msa1432060 | 0.813181 | 2.914500e-51 | -8.615850e-47 |
| Msa0125590 | Msa0790630 | 0.807753 | 4.333280e-50 | -8.615850e-47 |
| Msa0127340 | Msa0790630 | 0.807380 | 5.198920e-50 | -8.615850e-47 |
| Msa0156090 | Msa0790630 | 0.803514 | 3.361977e-49 | -8.615850e-47 |
| Msa0170070 | Msa0790630 | 0.801056 | 1.077824e-48 | -8.615850e-47 |
| Msa0186180 | Msa0790630 | 0.811580 | 6.522136e-51 | -8.615850e-47 |
| Msa0188870 | Msa0790630 | 0.920819 | 7.888028e-88 | -8.615850e-47 |
| Msa0204970 | Msa0790630 | 0.827651 | 1.391084e-54 | -8.615850e-47 |
| Msa0373170 | Msa0790630 | 0.841708 | 4.034688e-58 | -8.615850e-47 |
| Msa0412130 | Msa0790630 | 0.827845 | 1.249371e-54 | -8.615850e-47 |
| Msa0413170 | Msa0790630 | 0.803788 | 2.949179e-49 | -8.615850e-47 |
| Msa0415820 | Msa0790630 | 0.817393 | 3.374648e-52 | -8.615850e-47 |
| Msa0421750 | Msa0790630 | 0.849886 | 2.424491e-60 | -8.615850e-47 |
| Msa0461550 | Msa0790630 | 0.809438 | 1.892613e-50 | -8.615850e-47 |
| Msa0466520 | Msa0790630 | 0.810297 | 1.236414e-50 | -8.615850e-47 |
| Msa0467690 | Msa0790630 | 0.844000 | 9.908564e-59 | -8.615850e-47 |
| Msa0477630 | Msa0790630 | 0.801610 | 8.301842e-49 | -8.615850e-47 |
| Msa0249870 | Msa0790630 | 0.815689 | 8.129512e-52 | -8.615850e-47 |
| Msa0270680 | Msa0790630 | 0.998009 | 5.140694e-254 | -8.615850e-47 |
| Msa0281540 | Msa0790630 | 0.808770 | 2.630238e-50 | -8.615850e-47 |
| Msa0320580 | Msa0790630 | 0.822051 | 2.913307e-53 | -8.615850e-47 |
| Msa0344110 | Msa0790630 | 0.829953 | 3.856768e-55 | -8.615850e-47 |
| Msa0506880 | Msa0790630 | 0.838353 | 3.024923e-57 | -8.615850e-47 |
| Msa0507810 | Msa0790630 | 0.817635 | 2.976636e-52 | -8.615850e-47 |
| Msa0507820 | Msa0790630 | 0.811530 | 6.685333e-51 | -8.615850e-47 |
| Msa0507920 | Msa0790630 | 0.814039 | 1.886791e-51 | -8.615850e-47 |
| Msa0514020 | Msa0790630 | 0.843715 | 1.181755e-58 | -8.615850e-47 |
| Msa0527850 | Msa0790630 | 0.812005 | 5.269964e-51 | -8.615850e-47 |
| Msa0544410 | Msa0790630 | 0.802560 | 5.293275e-49 | -8.615850e-47 |
| Msa0554300 | Msa0790630 | 0.843749 | 1.157252e-58 | -8.615850e-47 |
| Msa0561560 | Msa0790630 | 0.830161 | 3.431139e-55 | -8.615850e-47 |
| Msa0572830 | Msa0790630 | 0.835885 | 1.293338e-56 | -8.615850e-47 |
| Msa0577280 | Msa0790630 | 0.816599 | 5.090445e-52 | -8.615850e-47 |
| Msa0577330 | Msa0790630 | 0.820727 | 5.885627e-53 | -8.615850e-47 |
| Msa0582460 | Msa0790630 | 0.815006 | 1.152925e-51 | -8.615850e-47 |
| Msa0586200 | Msa0790630 | 0.811283 | 7.566006e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790630 | MtrunA17_Chr2g0277991 | 99.052 | 422 | 4 | 0 | 33 | 454 | 6 | 427 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790630 | AT1G10780.2 | 64.846 | 421 | 147 | 1 | 34 | 454 | 5 | 424 | 0.0 | 583 |
| Msa0790630 | AT1G10780.1 | 65.155 | 419 | 145 | 1 | 36 | 454 | 1 | 418 | 0.0 | 582 |
Find 119 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAATGCTTGGTTTC+AGG | 0.149041 | 5_3:+1491515 | None:intergenic |
| TTATGGAACGTTTCCCATTT+AGG | 0.175370 | 5_3:+1491785 | None:intergenic |
| TGATCAAACTTATCCCTAAA+TGG | 0.192449 | 5_3:-1491799 | Msa0790630:CDS |
| CTTGAATCATTGGTAAAGTA+TGG | 0.210999 | 5_3:-1490753 | Msa0790630:CDS |
| AGAGTATACATGATTGATTT+TGG | 0.231137 | 5_3:-1491326 | Msa0790630:CDS |
| AACCAAACCTTTGATTCTTT+TGG | 0.254388 | 5_3:+1490336 | None:intergenic |
| AAATCAACAAAATCAATTTC+TGG | 0.256476 | 5_3:+1491155 | None:intergenic |
| CTGTGTATGGCCTTGCTTCA+TGG | 0.264549 | 5_3:-1491967 | Msa0790630:CDS |
| TATGGAACGTTTCCCATTTA+GGG | 0.268647 | 5_3:+1491786 | None:intergenic |
| CTTCAAGGATCCTAAGATTA+TGG | 0.284602 | 5_3:+1491768 | None:intergenic |
| GCTTCATGGCTATCACTTGC+AGG | 0.307648 | 5_3:-1491953 | Msa0790630:CDS |
| GGGAAACGTTCCATAATCTT+AGG | 0.315212 | 5_3:-1491778 | Msa0790630:CDS |
| TGAATTTGTGATTCCATGTT+TGG | 0.332405 | 5_3:-1490832 | Msa0790630:CDS |
| AGTAGCAACCTTGTCAGATT+TGG | 0.335278 | 5_3:+1491692 | None:intergenic |
| ACAACAAATGATCATTGCTT+TGG | 0.342019 | 5_3:+1490233 | None:intergenic |
| TTAGGATCCTTGAAGTTGTT+GGG | 0.351315 | 5_3:-1491760 | Msa0790630:CDS |
| TGCAGTAAATGCAATTATTC+AGG | 0.354985 | 5_3:-1491720 | Msa0790630:CDS |
| TCAAGATTATGTTACACTTT+CGG | 0.366892 | 5_3:-1490298 | Msa0790630:three_prime_UTR |
| TACAAGGCTGTAGTTGGATT+AGG | 0.380330 | 5_3:-1491541 | Msa0790630:CDS |
| CTTAGGATCCTTGAAGTTGT+TGG | 0.389083 | 5_3:-1491761 | Msa0790630:CDS |
| TTTATTGCTTGTCGATGCCT+TGG | 0.396042 | 5_3:-1490197 | Msa0790630:three_prime_UTR |
| TCTTCAAATGCTTGGTTTCA+GGG | 0.396771 | 5_3:+1491516 | None:intergenic |
| CAACAAATGATCATTGCTTT+GGG | 0.397588 | 5_3:+1490234 | None:intergenic |
| AATGAGCACTCTTGAATCAT+TGG | 0.400416 | 5_3:-1490763 | Msa0790630:CDS |
| CCAATGCAATCCAACTTTGA+TGG | 0.404251 | 5_3:+1491863 | None:intergenic |
| TACTGCCCTTTCTCTGTGTA+TGG | 0.406508 | 5_3:-1491980 | Msa0790630:CDS |
| TCTTGAATAAGCTTGATTGT+AGG | 0.409281 | 5_3:+1490365 | None:intergenic |
| TGAAAGATTCTTCAAATGCT+TGG | 0.409351 | 5_3:+1491508 | None:intergenic |
| CTCTTGCCCCAACAACTTCA+AGG | 0.412272 | 5_3:+1491753 | None:intergenic |
| TTATGTTACACTTTCGGAAA+AGG | 0.412378 | 5_3:-1490292 | Msa0790630:three_prime_UTR |
| AAGGCATCGACAAGCAATAA+AGG | 0.420147 | 5_3:+1490199 | None:intergenic |
| GACCAAAAGAATCAAAGGTT+TGG | 0.420514 | 5_3:-1490338 | Msa0790630:three_prime_UTR |
| GATCAAACTTATCCCTAAAT+GGG | 0.424364 | 5_3:-1491798 | Msa0790630:CDS |
| TCTTGGAAATTTATGCTACA+TGG | 0.426045 | 5_3:-1490396 | Msa0790630:three_prime_UTR |
| ACAAGGCTGTAGTTGGATTA+GGG | 0.427712 | 5_3:-1491540 | Msa0790630:CDS |
| CATTCGACTACCTGCACTGT+TGG | 0.430763 | 5_3:+1491481 | None:intergenic |
| ACAAAATCAATTTCTGGAAA+GGG | 0.432172 | 5_3:+1491161 | None:intergenic |
| TATCAAGATTCTTCAGATGA+AGG | 0.439513 | 5_3:-1490709 | Msa0790630:CDS |
| TATGTTACACTTTCGGAAAA+GGG | 0.440873 | 5_3:-1490291 | Msa0790630:three_prime_UTR |
| AACAAAATCAATTTCTGGAA+AGG | 0.445993 | 5_3:+1491160 | None:intergenic |
| TTATTGCTTGTCGATGCCTT+GGG | 0.450150 | 5_3:-1490196 | Msa0790630:three_prime_UTR |
| CACGGTGCATGTATCTGAAC+CGG | 0.452753 | 5_3:+1490646 | None:intergenic |
| TATATGAAGGTTGAATTCAC+CGG | 0.457387 | 5_3:-1491203 | Msa0790630:CDS |
| ACATGAAAGCCCATCAAAGT+TGG | 0.466038 | 5_3:-1491873 | Msa0790630:CDS |
| GAACGATGATAGTATTACTT+TGG | 0.468034 | 5_3:+1493790 | None:intergenic |
| ATATCAAACTTGCGCAGCTT+GGG | 0.468187 | 5_3:+1491119 | None:intergenic |
| CTGGCATAGTGCTGCAAACA+TGG | 0.469002 | 5_3:+1491088 | None:intergenic |
| GCAAGGCCATACACAGAGAA+AGG | 0.474113 | 5_3:+1491974 | None:intergenic |
| TACAATCAAGCTTATTCAAG+AGG | 0.477254 | 5_3:-1490363 | Msa0790630:three_prime_UTR |
| ATGTGGAAACTCTAAAATTG+TGG | 0.481641 | 5_3:-1491829 | Msa0790630:CDS |
| AGGTCCGTCTCTCTCTCATC+TGG | 0.487819 | 5_3:-1491933 | Msa0790630:CDS |
| GATATCAAACTTGCGCAGCT+TGG | 0.490212 | 5_3:+1491118 | None:intergenic |
| CTCTCATCTGGAGCTTCGAA+TGG | 0.496250 | 5_3:-1491921 | Msa0790630:CDS |
| TTATCTAATTCAGAGAATGA+AGG | 0.497659 | 5_3:-1490464 | Msa0790630:intron |
| CGATGACTTCCTTGCAAAGA+TGG | 0.498978 | 5_3:-1490260 | Msa0790630:three_prime_UTR |
| TCGAGGTACAAGGCTGTAGT+TGG | 0.501402 | 5_3:-1491547 | Msa0790630:CDS |
| ATGTACTGAAGTATGACATC+AGG | 0.505612 | 5_3:+1492199 | None:intergenic |
| ATCAGCCGTTGAGAGATTAG+AGG | 0.507988 | 5_3:-1492014 | Msa0790630:CDS |
| CTTTCAATTTCCAACAGTGC+AGG | 0.508430 | 5_3:-1491491 | Msa0790630:intron |
| AATAAGCTTGATTGTAGGCA+TGG | 0.511461 | 5_3:+1490370 | None:intergenic |
| CAACCTTGTCAGATTTGGAC+AGG | 0.511798 | 5_3:+1491697 | None:intergenic |
| CAATGCAATCCAACTTTGAT+GGG | 0.512313 | 5_3:+1491864 | None:intergenic |
| CCATCAAAGTTGGATTGCAT+TGG | 0.513791 | 5_3:-1491863 | Msa0790630:CDS |
| CAAGGCCATACACAGAGAAA+GGG | 0.514970 | 5_3:+1491975 | None:intergenic |
| TGACATCATTGTGAAAAGAA+TGG | 0.515415 | 5_3:-1492038 | Msa0790630:CDS |
| AACAAGACAAAGAGAAACTA+GGG | 0.515915 | 5_3:+1490151 | None:intergenic |
| ATCAAGATTCTTCAGATGAA+GGG | 0.518042 | 5_3:-1490708 | Msa0790630:CDS |
| CTGCGCAAGTTTGATATCCA+TGG | 0.520959 | 5_3:-1491113 | Msa0790630:CDS |
| AGTACAGTAAAACAATGTCT+TGG | 0.524086 | 5_3:-1490413 | Msa0790630:three_prime_UTR |
| TATCTAATTCAGAGAATGAA+GGG | 0.524169 | 5_3:-1490463 | Msa0790630:intron |
| CCCTGGAGTTTCTGTCAATG+AGG | 0.528486 | 5_3:-1491292 | Msa0790630:CDS |
| CCCTCATTGACAGAAACTCC+AGG | 0.531655 | 5_3:+1491291 | None:intergenic |
| CTGACAAGGTTGCTACTGCT+TGG | 0.532871 | 5_3:-1491686 | Msa0790630:CDS |
| TGTGGAAACTCTAAAATTGT+GGG | 0.532904 | 5_3:-1491828 | Msa0790630:CDS |
| TGTGATTCCATGTTTGGAGG+AGG | 0.535055 | 5_3:-1490826 | Msa0790630:CDS |
| TTGAATCATTGGTAAAGTAT+GGG | 0.539200 | 5_3:-1490752 | Msa0790630:CDS |
| AAACAAGACAAAGAGAAACT+AGG | 0.551859 | 5_3:+1490150 | None:intergenic |
| TTGCAAGGAAGTCATCGCAT+TGG | 0.553807 | 5_3:+1490266 | None:intergenic |
| AGGGAGACCAAAAGAATCAA+AGG | 0.556544 | 5_3:-1490343 | Msa0790630:three_prime_UTR |
| TAGGATCCTTGAAGTTGTTG+GGG | 0.559049 | 5_3:-1491759 | Msa0790630:CDS |
| TGTGAAACATCTTTATATGA+AGG | 0.559278 | 5_3:-1491216 | Msa0790630:CDS |
| GCAATTGTGTTTCTAAGCGA+TGG | 0.559701 | 5_3:-1492138 | Msa0790630:CDS |
| ATGAAGACCTCCTCCAAACA+TGG | 0.559835 | 5_3:+1490819 | None:intergenic |
| ATTGAATCTCTCGAGGTACA+AGG | 0.560371 | 5_3:-1491557 | Msa0790630:CDS |
| CCTGGAGTTTCTGTCAATGA+GGG | 0.562266 | 5_3:-1491291 | Msa0790630:CDS |
| CAAACTTGCGCAGCTTGGGA+TGG | 0.564636 | 5_3:+1491123 | None:intergenic |
| TTGCTACTGCTTGGATGTGA+AGG | 0.570826 | 5_3:-1491677 | Msa0790630:CDS |
| GTGCTGCAAACATGGCTCCA+TGG | 0.570847 | 5_3:+1491096 | None:intergenic |
| ACAGAAACTCCAGGGATGCA+AGG | 0.571452 | 5_3:+1491300 | None:intergenic |
| ATATGAAGGTTGAATTCACC+GGG | 0.576078 | 5_3:-1491202 | Msa0790630:CDS |
| GCAGGTTGATCGAAATTGAT+CGG | 0.581191 | 5_3:+1491651 | None:intergenic |
| ATATTGTCACATGTCAGTAA+TGG | 0.592308 | 5_3:-1492178 | Msa0790630:CDS |
| ATATCTTCTAAGTCAACCAC+TGG | 0.594318 | 5_3:-1493764 | Msa0790630:intron |
| GAGCTTCGAATGGACAACCT+TGG | 0.594522 | 5_3:-1491911 | Msa0790630:CDS |
| ATTCTATTCGAATTATCCCA+CGG | 0.597758 | 5_3:+1490628 | None:intergenic |
| GTATAATCTCATTATCGCCA+AGG | 0.600599 | 5_3:+1491894 | None:intergenic |
| GGCAGAGATTCGATTTCTGT+AGG | 0.601489 | 5_3:+1492220 | None:intergenic |
| TTGAAGAGCATCATAGTCCC+CGG | 0.602248 | 5_3:+1491184 | None:intergenic |
| TTTGGGCACCCATCTTTGCA+AGG | 0.608811 | 5_3:+1490251 | None:intergenic |
| ATTTGTGATTCCATGTTTGG+AGG | 0.609528 | 5_3:-1490829 | Msa0790630:CDS |
| CCCTAAAATTGAATCTCTCG+AGG | 0.610186 | 5_3:-1491564 | Msa0790630:CDS |
| AGTTGTTGGGGCAAGAGTCG+AGG | 0.613896 | 5_3:-1491747 | Msa0790630:CDS |
| CAAGTGATAGCCATGAAGCA+AGG | 0.624718 | 5_3:+1491957 | None:intergenic |
| GGTTCAGATACATGCACCGT+GGG | 0.628609 | 5_3:-1490644 | Msa0790630:CDS |
| ACAATCAAGCTTATTCAAGA+GGG | 0.630838 | 5_3:-1490362 | Msa0790630:three_prime_UTR |
| CTGAAGAATCTTGATAACCA+TGG | 0.631753 | 5_3:+1490716 | None:intergenic |
| AGCTCCAGATGAGAGAGAGA+CGG | 0.634676 | 5_3:+1491929 | None:intergenic |
| CTGGAGTTTCTGTCAATGAG+GGG | 0.644439 | 5_3:-1491290 | Msa0790630:CDS |
| GATGACTTCCTTGCAAAGAT+GGG | 0.646616 | 5_3:-1490259 | Msa0790630:three_prime_UTR |
| TAGCTCCTCTAATCTCTCAA+CGG | 0.648817 | 5_3:+1492009 | None:intergenic |
| TGGAGTTTCTGTCAATGAGG+GGG | 0.656210 | 5_3:-1491289 | Msa0790630:CDS |
| CCTCATTGACAGAAACTCCA+GGG | 0.657818 | 5_3:+1491292 | None:intergenic |
| AATTGCAATATGCAACATCA+CGG | 0.658583 | 5_3:+1492155 | None:intergenic |
| AGGCCTGTCCAAATCTGACA+AGG | 0.667331 | 5_3:-1491700 | Msa0790630:CDS |
| AGAGATTCGATTTCTGTAGG+CGG | 0.681192 | 5_3:+1492223 | None:intergenic |
| CATTGGTGCAGCAGTCAATG+TGG | 0.696850 | 5_3:-1491846 | Msa0790630:CDS |
| CGGTTCAGATACATGCACCG+TGG | 0.706295 | 5_3:-1490645 | Msa0790630:CDS |
| GTGGAAACTCTAAAATTGTG+GGG | 0.713865 | 5_3:-1491827 | Msa0790630:CDS |
| TATGAAGGTTGAATTCACCG+GGG | 0.788676 | 5_3:-1491201 | Msa0790630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAAATGAAAATATTTTA+CGG | + | chr5_3:1490687-1490706 | None:intergenic | 10.0% |
| !! | AAATATGTGAAGTTTATTTA+TGG | + | chr5_3:1490722-1490741 | None:intergenic | 15.0% |
| !!! | AATCCTAATGTTGATTTATA+AGG | + | chr5_3:1490335-1490354 | None:intergenic | 20.0% |
| !!! | AAAATGAAGATCTGAAATTA+GGG | + | chr5_3:1490805-1490824 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTGAATTCAGATT+TGG | - | chr5_3:1491150-1491169 | Msa0790630:CDS | 20.0% |
| !! | TTACTCATATATTGCTAATT+TGG | - | chr5_3:1491366-1491385 | Msa0790630:intron | 20.0% |
| !! | TTGTTTAAGTACAAAAGAAT+TGG | - | chr5_3:1491426-1491445 | Msa0790630:intron | 20.0% |
| !! | TGTTTAAGTACAAAAGAATT+GGG | - | chr5_3:1491427-1491446 | Msa0790630:intron | 20.0% |
| !! | CTATTTGTATATTGCAAATT+TGG | - | chr5_3:1491595-1491614 | Msa0790630:CDS | 20.0% |
| !! | AAATCAACAAAATCAATTTC+TGG | + | chr5_3:1492760-1492779 | None:intergenic | 20.0% |
| !! | ATATTATAACCATGATTTCA+AGG | - | chr5_3:1492905-1492924 | Msa0790630:intron | 20.0% |
| !!! | AAGATATCCATTTATTTTAC+AGG | - | chr5_3:1493050-1493069 | Msa0790630:intron | 20.0% |
| !!! | AATGTTGATTTATAAGGTGT+TGG | + | chr5_3:1490329-1490348 | None:intergenic | 25.0% |
| ! | ACACCTTATAAATCAACATT+AGG | - | chr5_3:1490329-1490348 | Msa0790630:three_prime_UTR | 25.0% |
| !! | TCTTTTCCATAAAAAATGAC+CGG | - | chr5_3:1490541-1490560 | Msa0790630:intron | 25.0% |
| !! | ATGAAAATATTTTACGGTGA+AGG | + | chr5_3:1490681-1490700 | None:intergenic | 25.0% |
| !! | GAAAATGAAGATCTGAAATT+AGG | + | chr5_3:1490806-1490825 | None:intergenic | 25.0% |
| ! | TATAGTGCTTAGATCTTAAT+TGG | - | chr5_3:1490993-1491012 | Msa0790630:intron | 25.0% |
| ! | ATAGTGCTTAGATCTTAATT+GGG | - | chr5_3:1490994-1491013 | Msa0790630:intron | 25.0% |
| ! | AATAAAACCTAGATTGGAAA+AGG | + | chr5_3:1491055-1491074 | None:intergenic | 25.0% |
| ! | GTGATAATTAAGATAGTTAG+AGG | - | chr5_3:1491235-1491254 | Msa0790630:CDS | 25.0% |
| !! | TGTTAGAGTAATTTTATTCG+AGG | - | chr5_3:1491279-1491298 | Msa0790630:CDS | 25.0% |
| ! | TGTACTTAAACAATACTAAC+CGG | + | chr5_3:1491419-1491438 | None:intergenic | 25.0% |
| ! | AAAGAAAATTGAGCTTACAA+AGG | + | chr5_3:1492541-1492560 | None:intergenic | 25.0% |
| !!! | AGAGTATACATGATTGATTT+TGG | - | chr5_3:1492586-1492605 | Msa0790630:intron | 25.0% |
| ! | TGTGAAACATCTTTATATGA+AGG | - | chr5_3:1492696-1492715 | Msa0790630:intron | 25.0% |
| !! | ACAAAATCAATTTCTGGAAA+GGG | + | chr5_3:1492754-1492773 | None:intergenic | 25.0% |
| !! | AACAAAATCAATTTCTGGAA+AGG | + | chr5_3:1492755-1492774 | None:intergenic | 25.0% |
| ! | GAATCAACCTGTAAAATAAA+TGG | + | chr5_3:1493060-1493079 | None:intergenic | 25.0% |
| !! | ATTTTCTGTTCAGCATTTAA+TGG | + | chr5_3:1493132-1493151 | None:intergenic | 25.0% |
| ! | TTGAATCATTGGTAAAGTAT+GGG | - | chr5_3:1493160-1493179 | Msa0790630:intron | 25.0% |
| ! | TAAAGTATGGGAAAAATCTA+AGG | - | chr5_3:1493172-1493191 | Msa0790630:intron | 25.0% |
| !!! | ATTTTTTTGATGAGATTTGC+CGG | - | chr5_3:1493247-1493266 | Msa0790630:intron | 25.0% |
| !! | TTGATGCAATTTTTAACACA+GGG | - | chr5_3:1493312-1493331 | Msa0790630:intron | 25.0% |
| !!! | TGATAATTAGTTCACTTTTG+TGG | - | chr5_3:1493375-1493394 | Msa0790630:intron | 25.0% |
| ! | TTATCTAATTCAGAGAATGA+AGG | - | chr5_3:1493448-1493467 | Msa0790630:intron | 25.0% |
| ! | TATCTAATTCAGAGAATGAA+GGG | - | chr5_3:1493449-1493468 | Msa0790630:intron | 25.0% |
| ! | TCAAGATTATGTTACACTTT+CGG | - | chr5_3:1493614-1493633 | Msa0790630:intron | 25.0% |
| GAACGATGATAGTATTACTT+TGG | + | chr5_3:1490125-1490144 | None:intergenic | 30.0% | |
| GAAAGAGTTTAATATACCAG+TGG | + | chr5_3:1490167-1490186 | None:intergenic | 30.0% | |
| !! | AAACTTATTTTCACTCTCCA+AGG | - | chr5_3:1490222-1490241 | Msa0790630:three_prime_UTR | 30.0% |
| !! | AACTTATTTTCACTCTCCAA+GGG | - | chr5_3:1490223-1490242 | Msa0790630:three_prime_UTR | 30.0% |
| GTTTGAATTGCGTAAGATTT+GGG | + | chr5_3:1490362-1490381 | None:intergenic | 30.0% | |
| AGTTTGAATTGCGTAAGATT+TGG | + | chr5_3:1490363-1490382 | None:intergenic | 30.0% | |
| !! | AAATCTCTAAAACGTTAACG+CGG | - | chr5_3:1490632-1490651 | Msa0790630:CDS | 30.0% |
| ! | AAAATATTTTACGGTGAAGG+AGG | + | chr5_3:1490678-1490697 | None:intergenic | 30.0% |
| CAGCTAAGTTAAAGCAAAAA+GGG | + | chr5_3:1490883-1490902 | None:intergenic | 30.0% | |
| GCAAAGAATAAAACCTAGAT+TGG | + | chr5_3:1491061-1491080 | None:intergenic | 30.0% | |
| ! | GAGGGTAATTTGAAGTAAAT+GGG | - | chr5_3:1491193-1491212 | Msa0790630:CDS | 30.0% |
| AAACAATACTAACCGGTATA+TGG | + | chr5_3:1491412-1491431 | None:intergenic | 30.0% | |
| ! | GTATGATTTGAAGTCGAAAT+CGG | + | chr5_3:1491574-1491593 | None:intergenic | 30.0% |
| ATATTGTCACATGTCAGTAA+TGG | - | chr5_3:1491734-1491753 | Msa0790630:CDS | 30.0% | |
| AATTGCAATATGCAACATCA+CGG | + | chr5_3:1491760-1491779 | None:intergenic | 30.0% | |
| ! | CAATGATGTCAGAATTTTCA+CGG | + | chr5_3:1491865-1491884 | None:intergenic | 30.0% |
| TGACATCATTGTGAAAAGAA+TGG | - | chr5_3:1491874-1491893 | Msa0790630:CDS | 30.0% | |
| !! | ATGTGGAAACTCTAAAATTG+TGG | - | chr5_3:1492083-1492102 | Msa0790630:CDS | 30.0% |
| !! | TGTGGAAACTCTAAAATTGT+GGG | - | chr5_3:1492084-1492103 | Msa0790630:CDS | 30.0% |
| TGATCAAACTTATCCCTAAA+TGG | - | chr5_3:1492113-1492132 | Msa0790630:CDS | 30.0% | |
| GATCAAACTTATCCCTAAAT+GGG | - | chr5_3:1492114-1492133 | Msa0790630:CDS | 30.0% | |
| TGCAGTAAATGCAATTATTC+AGG | - | chr5_3:1492192-1492211 | Msa0790630:CDS | 30.0% | |
| TGAAAGATTCTTCAAATGCT+TGG | + | chr5_3:1492407-1492426 | None:intergenic | 30.0% | |
| GGAGAGCAATAAAAAAACAA+AGG | + | chr5_3:1492494-1492513 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTATTGCTCTCC+TGG | - | chr5_3:1492494-1492513 | Msa0790630:intron | 30.0% |
| TCCTGGAATTTACTAAAAAG+TGG | - | chr5_3:1492511-1492530 | Msa0790630:intron | 30.0% | |
| !!! | ACCACTTTTTAGTAAATTCC+AGG | + | chr5_3:1492515-1492534 | None:intergenic | 30.0% |
| ! | TTTACTTGTTAATTGCTTGC+AGG | - | chr5_3:1492562-1492581 | Msa0790630:intron | 30.0% |
| ! | TTACTTGTTAATTGCTTGCA+GGG | - | chr5_3:1492563-1492582 | Msa0790630:intron | 30.0% |
| TATATGAAGGTTGAATTCAC+CGG | - | chr5_3:1492709-1492728 | Msa0790630:intron | 30.0% | |
| TGAATTTGTGATTCCATGTT+TGG | - | chr5_3:1493080-1493099 | Msa0790630:intron | 30.0% | |
| CTTGAATCATTGGTAAAGTA+TGG | - | chr5_3:1493159-1493178 | Msa0790630:intron | 30.0% | |
| TATCAAGATTCTTCAGATGA+AGG | - | chr5_3:1493203-1493222 | Msa0790630:intron | 30.0% | |
| ATCAAGATTCTTCAGATGAA+GGG | - | chr5_3:1493204-1493223 | Msa0790630:intron | 30.0% | |
| ATTCTATTCGAATTATCCCA+CGG | + | chr5_3:1493287-1493306 | None:intergenic | 30.0% | |
| ! | CTTGATGCAATTTTTAACAC+AGG | - | chr5_3:1493311-1493330 | Msa0790630:intron | 30.0% |
| ! | ACTGTACTTTTGACAATCAT+GGG | + | chr5_3:1493487-1493506 | None:intergenic | 30.0% |
| ! | TACTGTACTTTTGACAATCA+TGG | + | chr5_3:1493488-1493507 | None:intergenic | 30.0% |
| AGTACAGTAAAACAATGTCT+TGG | - | chr5_3:1493499-1493518 | Msa0790630:intron | 30.0% | |
| TCTTGGAAATTTATGCTACA+TGG | - | chr5_3:1493516-1493535 | Msa0790630:intron | 30.0% | |
| TCTTGAATAAGCTTGATTGT+AGG | + | chr5_3:1493550-1493569 | None:intergenic | 30.0% | |
| TACAATCAAGCTTATTCAAG+AGG | - | chr5_3:1493549-1493568 | Msa0790630:intron | 30.0% | |
| ACAATCAAGCTTATTCAAGA+GGG | - | chr5_3:1493550-1493569 | Msa0790630:intron | 30.0% | |
| ! | AACCAAACCTTTGATTCTTT+TGG | + | chr5_3:1493579-1493598 | None:intergenic | 30.0% |
| TTATGTTACACTTTCGGAAA+AGG | - | chr5_3:1493620-1493639 | Msa0790630:intron | 30.0% | |
| TATGTTACACTTTCGGAAAA+GGG | - | chr5_3:1493621-1493640 | Msa0790630:intron | 30.0% | |
| CAACAAATGATCATTGCTTT+GGG | + | chr5_3:1493681-1493700 | None:intergenic | 30.0% | |
| ACAACAAATGATCATTGCTT+TGG | + | chr5_3:1493682-1493701 | None:intergenic | 30.0% | |
| AACAAGACAAAGAGAAACTA+GGG | + | chr5_3:1493764-1493783 | None:intergenic | 30.0% | |
| AAACAAGACAAAGAGAAACT+AGG | + | chr5_3:1493765-1493784 | None:intergenic | 30.0% | |
| ATATCTTCTAAGTCAACCAC+TGG | - | chr5_3:1490148-1490167 | Msa0790630:three_prime_UTR | 35.0% | |
| !! | GTTGATTTATAAGGTGTTGG+TGG | + | chr5_3:1490326-1490345 | None:intergenic | 35.0% |
| TATTTATCACTCGGTCTAGT+TGG | + | chr5_3:1490399-1490418 | None:intergenic | 35.0% | |
| GAACAGTGGTATTTATCACT+CGG | + | chr5_3:1490408-1490427 | None:intergenic | 35.0% | |
| !!! | AGTGTGTAAGTTTTGAACAG+TGG | + | chr5_3:1490422-1490441 | None:intergenic | 35.0% |
| TTTCCATAAAAAATGACCGG+TGG | - | chr5_3:1490544-1490563 | Msa0790630:intron | 35.0% | |
| !! | AATCTCTAAAACGTTAACGC+GGG | - | chr5_3:1490633-1490652 | Msa0790630:CDS | 35.0% |
| ! | GAAGATCTGAAATTAGGGTT+AGG | + | chr5_3:1490800-1490819 | None:intergenic | 35.0% |
| CCAGCTAAGTTAAAGCAAAA+AGG | + | chr5_3:1490884-1490903 | None:intergenic | 35.0% | |
| !! | CCTTTTTGCTTTAACTTAGC+TGG | - | chr5_3:1490881-1490900 | Msa0790630:intron | 35.0% |
| !! | TGCATCCAATGTTCAAGTTT+TGG | - | chr5_3:1490946-1490965 | Msa0790630:intron | 35.0% |
| !! | GCATCCAATGTTCAAGTTTT+GGG | - | chr5_3:1490947-1490966 | Msa0790630:intron | 35.0% |
| TGAACCCAAAACTTGAACAT+TGG | + | chr5_3:1490954-1490973 | None:intergenic | 35.0% | |
| ! | AAACTCACCTTTTCCAATCT+AGG | - | chr5_3:1491045-1491064 | Msa0790630:intron | 35.0% |
| TTGAATTCAGATTTGGCGTT+TGG | - | chr5_3:1491157-1491176 | Msa0790630:CDS | 35.0% | |
| TGAATTCAGATTTGGCGTTT+GGG | - | chr5_3:1491158-1491177 | Msa0790630:CDS | 35.0% | |
| ! | GGAGGGTAATTTGAAGTAAA+TGG | - | chr5_3:1491192-1491211 | Msa0790630:CDS | 35.0% |
| TAAATGGGAGCTAAACTCAA+AGG | - | chr5_3:1491208-1491227 | Msa0790630:CDS | 35.0% | |
| AAATGGGAGCTAAACTCAAA+GGG | - | chr5_3:1491209-1491228 | Msa0790630:CDS | 35.0% | |
| TATTTGATCCGTCCATATAC+CGG | - | chr5_3:1491397-1491416 | Msa0790630:intron | 35.0% | |
| AATACTAACCGGTATATGGA+CGG | + | chr5_3:1491408-1491427 | None:intergenic | 35.0% | |
| ATGTACTGAAGTATGACATC+AGG | + | chr5_3:1491716-1491735 | None:intergenic | 35.0% | |
| GTATAATCTCATTATCGCCA+AGG | + | chr5_3:1492021-1492040 | None:intergenic | 35.0% | |
| CAATGCAATCCAACTTTGAT+GGG | + | chr5_3:1492051-1492070 | None:intergenic | 35.0% | |
| !! | GTGGAAACTCTAAAATTGTG+GGG | - | chr5_3:1492085-1492104 | Msa0790630:CDS | 35.0% |
| TATGGAACGTTTCCCATTTA+GGG | + | chr5_3:1492129-1492148 | None:intergenic | 35.0% | |
| TTATGGAACGTTTCCCATTT+AGG | + | chr5_3:1492130-1492149 | None:intergenic | 35.0% | |
| CTTCAAGGATCCTAAGATTA+TGG | + | chr5_3:1492147-1492166 | None:intergenic | 35.0% | |
| TTAGGATCCTTGAAGTTGTT+GGG | - | chr5_3:1492152-1492171 | Msa0790630:CDS | 35.0% | |
| ! | AAGCTGGATTTTTATGGTCT+TGG | - | chr5_3:1492301-1492320 | Msa0790630:intron | 35.0% |
| ! | AGCTGGATTTTTATGGTCTT+GGG | - | chr5_3:1492302-1492321 | Msa0790630:intron | 35.0% |
| ! | CTCGAGAGATTCAATTTTAG+GGG | + | chr5_3:1492350-1492369 | None:intergenic | 35.0% |
| ! | CCTCGAGAGATTCAATTTTA+GGG | + | chr5_3:1492351-1492370 | None:intergenic | 35.0% |
| ! | ACCTCGAGAGATTCAATTTT+AGG | + | chr5_3:1492352-1492371 | None:intergenic | 35.0% |
| TCTTCAAATGCTTGGTTTCA+GGG | + | chr5_3:1492399-1492418 | None:intergenic | 35.0% | |
| TTCTTCAAATGCTTGGTTTC+AGG | + | chr5_3:1492400-1492419 | None:intergenic | 35.0% | |
| ATATGAAGGTTGAATTCACC+GGG | - | chr5_3:1492710-1492729 | Msa0790630:intron | 35.0% | |
| !! | CATGTTTTAGACTGTTCTTC+TGG | + | chr5_3:1492846-1492865 | None:intergenic | 35.0% |
| ! | AAGCTACACACTATAGCTTT+TGG | - | chr5_3:1492928-1492947 | Msa0790630:intron | 35.0% |
| ! | TACACACTATAGCTTTTGGA+AGG | - | chr5_3:1492932-1492951 | Msa0790630:intron | 35.0% |
| ATTTGTGATTCCATGTTTGG+AGG | - | chr5_3:1493083-1493102 | Msa0790630:intron | 35.0% | |
| AATGAGCACTCTTGAATCAT+TGG | - | chr5_3:1493149-1493168 | Msa0790630:intron | 35.0% | |
| ! | CTGAAGAATCTTGATAACCA+TGG | + | chr5_3:1493199-1493218 | None:intergenic | 35.0% |
| !! | TTCGTACTGATTTCCAGTTA+CGG | - | chr5_3:1493338-1493357 | Msa0790630:intron | 35.0% |
| ! | ACTTTTGACAATCATGGGAA+AGG | + | chr5_3:1493482-1493501 | None:intergenic | 35.0% |
| AATAAGCTTGATTGTAGGCA+TGG | + | chr5_3:1493545-1493564 | None:intergenic | 35.0% | |
| GACCAAAAGAATCAAAGGTT+TGG | - | chr5_3:1493574-1493593 | Msa0790630:intron | 35.0% | |
| TGTGCAATCGAGATTCAACT+AGG | + | chr5_3:1490263-1490282 | None:intergenic | 40.0% | |
| !!! | CTTCCACCGGTCATTTTTTA+TGG | + | chr5_3:1490550-1490569 | None:intergenic | 40.0% |
| ! | TATTTTACGGTGAAGGAGGA+GGG | + | chr5_3:1490674-1490693 | None:intergenic | 40.0% |
| ! | ATATTTTACGGTGAAGGAGG+AGG | + | chr5_3:1490675-1490694 | None:intergenic | 40.0% |
| GAATTCAGATTTGGCGTTTG+GGG | - | chr5_3:1491159-1491178 | Msa0790630:CDS | 40.0% | |
| AATTCAGATTTGGCGTTTGG+GGG | - | chr5_3:1491160-1491179 | Msa0790630:CDS | 40.0% | |
| !! | TTTGGGGGTGTTAATTTGGA+GGG | - | chr5_3:1491175-1491194 | Msa0790630:CDS | 40.0% |
| AATTGGGAGCTAAACTGAGA+AGG | - | chr5_3:1491443-1491462 | Msa0790630:intron | 40.0% | |
| ATTGGGAGCTAAACTGAGAA+GGG | - | chr5_3:1491444-1491463 | Msa0790630:intron | 40.0% | |
| TGCGAGAGTTAGATGATTTG+AGG | - | chr5_3:1491513-1491532 | Msa0790630:CDS | 40.0% | |
| ATTCTGATGCTTGTGCATGA+CGG | - | chr5_3:1491546-1491565 | Msa0790630:CDS | 40.0% | |
| AGAGATTCGATTTCTGTAGG+CGG | + | chr5_3:1491692-1491711 | None:intergenic | 40.0% | |
| ! | GCAATTGTGTTTCTAAGCGA+TGG | - | chr5_3:1491774-1491793 | Msa0790630:CDS | 40.0% |
| ! | ATGTCAGAATTTTCACGGTG+AGG | + | chr5_3:1491860-1491879 | None:intergenic | 40.0% |
| TAGCTCCTCTAATCTCTCAA+CGG | + | chr5_3:1491906-1491925 | None:intergenic | 40.0% | |
| ACATGAAAGCCCATCAAAGT+TGG | - | chr5_3:1492039-1492058 | Msa0790630:CDS | 40.0% | |
| CCAATGCAATCCAACTTTGA+TGG | + | chr5_3:1492052-1492071 | None:intergenic | 40.0% | |
| CCATCAAAGTTGGATTGCAT+TGG | - | chr5_3:1492049-1492068 | Msa0790630:CDS | 40.0% | |
| GGGAAACGTTCCATAATCTT+AGG | - | chr5_3:1492134-1492153 | Msa0790630:CDS | 40.0% | |
| CTTAGGATCCTTGAAGTTGT+TGG | - | chr5_3:1492151-1492170 | Msa0790630:CDS | 40.0% | |
| TAGGATCCTTGAAGTTGTTG+GGG | - | chr5_3:1492153-1492172 | Msa0790630:CDS | 40.0% | |
| AGTAGCAACCTTGTCAGATT+TGG | + | chr5_3:1492223-1492242 | None:intergenic | 40.0% | |
| !! | GCAGGTTGATCGAAATTGAT+CGG | + | chr5_3:1492264-1492283 | None:intergenic | 40.0% |
| !!! | TTCGATCAACCTGCCATTTT+TGG | - | chr5_3:1492270-1492289 | Msa0790630:intron | 40.0% |
| ! | CAGTGCAAGCTGGATTTTTA+TGG | - | chr5_3:1492295-1492314 | Msa0790630:intron | 40.0% |
| !! | GAGAGATTCAATTTTAGGGG+AGG | + | chr5_3:1492347-1492366 | None:intergenic | 40.0% |
| CCCTAAAATTGAATCTCTCG+AGG | - | chr5_3:1492348-1492367 | Msa0790630:intron | 40.0% | |
| ATTGAATCTCTCGAGGTACA+AGG | - | chr5_3:1492355-1492374 | Msa0790630:intron | 40.0% | |
| TACAAGGCTGTAGTTGGATT+AGG | - | chr5_3:1492371-1492390 | Msa0790630:intron | 40.0% | |
| ACAAGGCTGTAGTTGGATTA+GGG | - | chr5_3:1492372-1492391 | Msa0790630:intron | 40.0% | |
| CTTTCAATTTCCAACAGTGC+AGG | - | chr5_3:1492421-1492440 | Msa0790630:intron | 40.0% | |
| TATGAAGGTTGAATTCACCG+GGG | - | chr5_3:1492711-1492730 | Msa0790630:intron | 40.0% | |
| ATATCAAACTTGCGCAGCTT+GGG | + | chr5_3:1492796-1492815 | None:intergenic | 40.0% | |
| GTGTAGCTTCCTTGAAATCA+TGG | + | chr5_3:1492917-1492936 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTTTCTTCGACAC+AGG | + | chr5_3:1492959-1492978 | None:intergenic | 40.0% |
| CTGTGTCGAAGAAAACAAAC+TGG | - | chr5_3:1492957-1492976 | Msa0790630:intron | 40.0% | |
| TGGGAAAAATCTAAGGACCA+TGG | - | chr5_3:1493179-1493198 | Msa0790630:intron | 40.0% | |
| AGGGAGACCAAAAGAATCAA+AGG | - | chr5_3:1493569-1493588 | Msa0790630:intron | 40.0% | |
| GATGACTTCCTTGCAAAGAT+GGG | - | chr5_3:1493653-1493672 | Msa0790630:intron | 40.0% | |
| !! | AAGGCATCGACAAGCAATAA+AGG | + | chr5_3:1493716-1493735 | None:intergenic | 40.0% |
| TTTATTGCTTGTCGATGCCT+TGG | - | chr5_3:1493715-1493734 | Msa0790630:intron | 40.0% | |
| TTATTGCTTGTCGATGCCTT+GGG | - | chr5_3:1493716-1493735 | Msa0790630:intron | 40.0% | |
| ! | GCCTTGGGCATAAGTTTTTA+AGG | - | chr5_3:1493731-1493750 | Msa0790630:intron | 40.0% |
| GCCTTAAAAACTTATGCCCA+AGG | + | chr5_3:1493735-1493754 | None:intergenic | 40.0% | |
| ! | GGTTGAACTCATTTTGCCCT+TGG | + | chr5_3:1490242-1490261 | None:intergenic | 45.0% |
| AGTGAAGTGCGCGTGTAAAA+TGG | - | chr5_3:1490573-1490592 | Msa0790630:intron | 45.0% | |
| ! | AGCTCTTGGTGTGTGTTGTT+GGG | + | chr5_3:1490772-1490791 | None:intergenic | 45.0% |
| ! | AAGCTCTTGGTGTGTGTTGT+TGG | + | chr5_3:1490773-1490792 | None:intergenic | 45.0% |
| AGGGTTAGGTTACAAGCTCT+TGG | + | chr5_3:1490786-1490805 | None:intergenic | 45.0% | |
| !! | GTTTGGGGGTGTTAATTTGG+AGG | - | chr5_3:1491174-1491193 | Msa0790630:CDS | 45.0% |
| GGCAGAGATTCGATTTCTGT+AGG | + | chr5_3:1491695-1491714 | None:intergenic | 45.0% | |
| ATCAGCCGTTGAGAGATTAG+AGG | - | chr5_3:1491898-1491917 | Msa0790630:CDS | 45.0% | |
| TACTGCCCTTTCTCTGTGTA+TGG | - | chr5_3:1491932-1491951 | Msa0790630:CDS | 45.0% | |
| CAAGGCCATACACAGAGAAA+GGG | + | chr5_3:1491940-1491959 | None:intergenic | 45.0% | |
| CAAGTGATAGCCATGAAGCA+AGG | + | chr5_3:1491958-1491977 | None:intergenic | 45.0% | |
| CAACCTTGTCAGATTTGGAC+AGG | + | chr5_3:1492218-1492237 | None:intergenic | 45.0% | |
| TTGCTACTGCTTGGATGTGA+AGG | - | chr5_3:1492235-1492254 | Msa0790630:CDS | 45.0% | |
| AGCTTGCACTGCTCCAAAAA+TGG | + | chr5_3:1492286-1492305 | None:intergenic | 45.0% | |
| !!! | ATTTTTGGAGCAGTGCAAGC+TGG | - | chr5_3:1492285-1492304 | Msa0790630:intron | 45.0% |
| !! | TTTTGGAAACCTTGCATCCC+TGG | - | chr5_3:1492603-1492622 | Msa0790630:intron | 45.0% |
| CCTCATTGACAGAAACTCCA+GGG | + | chr5_3:1492623-1492642 | None:intergenic | 45.0% | |
| CCTGGAGTTTCTGTCAATGA+GGG | - | chr5_3:1492621-1492640 | Msa0790630:intron | 45.0% | |
| CTGGAGTTTCTGTCAATGAG+GGG | - | chr5_3:1492622-1492641 | Msa0790630:intron | 45.0% | |
| TGGAGTTTCTGTCAATGAGG+GGG | - | chr5_3:1492623-1492642 | Msa0790630:intron | 45.0% | |
| !! | TTGAAGAGCATCATAGTCCC+CGG | + | chr5_3:1492731-1492750 | None:intergenic | 45.0% |
| GATATCAAACTTGCGCAGCT+TGG | + | chr5_3:1492797-1492816 | None:intergenic | 45.0% | |
| CTGCGCAAGTTTGATATCCA+TGG | - | chr5_3:1492799-1492818 | Msa0790630:intron | 45.0% | |
| TGTGATTCCATGTTTGGAGG+AGG | - | chr5_3:1493086-1493105 | Msa0790630:intron | 45.0% | |
| ATGAAGACCTCCTCCAAACA+TGG | + | chr5_3:1493096-1493115 | None:intergenic | 45.0% | |
| TTCAGAAGTCTAGCCGTAAC+TGG | + | chr5_3:1493354-1493373 | None:intergenic | 45.0% | |
| TTGCAAGGAAGTCATCGCAT+TGG | + | chr5_3:1493649-1493668 | None:intergenic | 45.0% | |
| CGATGACTTCCTTGCAAAGA+TGG | - | chr5_3:1493652-1493671 | Msa0790630:intron | 45.0% | |
| CGACTGCTGCAAAAATTGCG+AGG | + | chr5_3:1490102-1490121 | None:intergenic | 50.0% | |
| GCACTTCACTACACTTCCAC+CGG | + | chr5_3:1490563-1490582 | None:intergenic | 50.0% | |
| !! | GGCGTTTGGGGGTGTTAATT+TGG | - | chr5_3:1491171-1491190 | Msa0790630:CDS | 50.0% |
| GCAAGGCCATACACAGAGAA+AGG | + | chr5_3:1491941-1491960 | None:intergenic | 50.0% | |
| ! | CTGTGTATGGCCTTGCTTCA+TGG | - | chr5_3:1491945-1491964 | Msa0790630:CDS | 50.0% |
| GCTTCATGGCTATCACTTGC+AGG | - | chr5_3:1491959-1491978 | Msa0790630:CDS | 50.0% | |
| AGCTCCAGATGAGAGAGAGA+CGG | + | chr5_3:1491986-1492005 | None:intergenic | 50.0% | |
| ! | CTCTCATCTGGAGCTTCGAA+TGG | - | chr5_3:1491991-1492010 | Msa0790630:CDS | 50.0% |
| GAGCTTCGAATGGACAACCT+TGG | - | chr5_3:1492001-1492020 | Msa0790630:CDS | 50.0% | |
| CATTGGTGCAGCAGTCAATG+TGG | - | chr5_3:1492066-1492085 | Msa0790630:CDS | 50.0% | |
| CTCTTGCCCCAACAACTTCA+AGG | + | chr5_3:1492162-1492181 | None:intergenic | 50.0% | |
| AGGCCTGTCCAAATCTGACA+AGG | - | chr5_3:1492212-1492231 | Msa0790630:CDS | 50.0% | |
| CTGACAAGGTTGCTACTGCT+TGG | - | chr5_3:1492226-1492245 | Msa0790630:CDS | 50.0% | |
| TGCACTGCTCCAAAAATGGC+AGG | + | chr5_3:1492282-1492301 | None:intergenic | 50.0% | |
| TCGAGGTACAAGGCTGTAGT+TGG | - | chr5_3:1492365-1492384 | Msa0790630:intron | 50.0% | |
| CATTCGACTACCTGCACTGT+TGG | + | chr5_3:1492434-1492453 | None:intergenic | 50.0% | |
| ACAGAAACTCCAGGGATGCA+AGG | + | chr5_3:1492615-1492634 | None:intergenic | 50.0% | |
| CCCTGGAGTTTCTGTCAATG+AGG | - | chr5_3:1492620-1492639 | Msa0790630:intron | 50.0% | |
| CCCTCATTGACAGAAACTCC+AGG | + | chr5_3:1492624-1492643 | None:intergenic | 50.0% | |
| TGTCAATGAGGGGGATACAG+TGG | - | chr5_3:1492632-1492651 | Msa0790630:intron | 50.0% | |
| CTGGCATAGTGCTGCAAACA+TGG | + | chr5_3:1492827-1492846 | None:intergenic | 50.0% | |
| CACGGTGCATGTATCTGAAC+CGG | + | chr5_3:1493269-1493288 | None:intergenic | 50.0% | |
| GGTTCAGATACATGCACCGT+GGG | - | chr5_3:1493268-1493287 | Msa0790630:intron | 50.0% | |
| TTTGGGCACCCATCTTTGCA+AGG | + | chr5_3:1493664-1493683 | None:intergenic | 50.0% | |
| AGGCGGAGATTCGATTGCTG+TGG | + | chr5_3:1491675-1491694 | None:intergenic | 55.0% | |
| AGGTCCGTCTCTCTCTCATC+TGG | - | chr5_3:1491979-1491998 | Msa0790630:CDS | 55.0% | |
| AGTTGTTGGGGCAAGAGTCG+AGG | - | chr5_3:1492165-1492184 | Msa0790630:CDS | 55.0% | |
| TGAGGGGGATACAGTGGTGT+TGG | - | chr5_3:1492638-1492657 | Msa0790630:intron | 55.0% | |
| GAGGGGGATACAGTGGTGTT+GGG | - | chr5_3:1492639-1492658 | Msa0790630:intron | 55.0% | |
| CAAACTTGCGCAGCTTGGGA+TGG | + | chr5_3:1492792-1492811 | None:intergenic | 55.0% | |
| GTGCTGCAAACATGGCTCCA+TGG | + | chr5_3:1492819-1492838 | None:intergenic | 55.0% | |
| CGGTTCAGATACATGCACCG+TGG | - | chr5_3:1493267-1493286 | Msa0790630:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1490088 | 1493846 | 1490088 | ID=Msa0790630;Name=Msa0790630 |
| chr5_3 | mRNA | 1490088 | 1493846 | 1490088 | ID=Msa0790630-mRNA-1;Parent=Msa0790630;Name=Msa0790630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.8|0.8|0.75|0.6|5|431|454 |
| chr5_3 | exon | 1490088 | 1490473 | 1490088 | ID=Msa0790630-mRNA-1:exon:585;Parent=Msa0790630-mRNA-1 |
| chr5_3 | exon | 1490581 | 1490862 | 1490581 | ID=Msa0790630-mRNA-1:exon:584;Parent=Msa0790630-mRNA-1 |
| chr5_3 | exon | 1491070 | 1491350 | 1491070 | ID=Msa0790630-mRNA-1:exon:583;Parent=Msa0790630-mRNA-1 |
| chr5_3 | exon | 1491492 | 1492256 | 1491492 | ID=Msa0790630-mRNA-1:exon:582;Parent=Msa0790630-mRNA-1 |
| chr5_3 | exon | 1493765 | 1493846 | 1493765 | ID=Msa0790630-mRNA-1:exon:581;Parent=Msa0790630-mRNA-1 |
| chr5_3 | CDS | 1493765 | 1493846 | 1493765 | ID=Msa0790630-mRNA-1:cds;Parent=Msa0790630-mRNA-1 |
| chr5_3 | CDS | 1491492 | 1492256 | 1491492 | ID=Msa0790630-mRNA-1:cds;Parent=Msa0790630-mRNA-1 |
| chr5_3 | CDS | 1491070 | 1491350 | 1491070 | ID=Msa0790630-mRNA-1:cds;Parent=Msa0790630-mRNA-1 |
| chr5_3 | CDS | 1490626 | 1490862 | 1490626 | ID=Msa0790630-mRNA-1:cds;Parent=Msa0790630-mRNA-1 |
| chr5_3 | three_prime_UTR | 1490581 | 1490625 | 1490581 | ID=Msa0790630-mRNA-1:three_prime_utr;Parent=Msa0790630-mRNA-1 |
| chr5_3 | three_prime_UTR | 1490088 | 1490473 | 1490088 | ID=Msa0790630-mRNA-1:three_prime_utr;Parent=Msa0790630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
