AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1347620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347620 MtrunA17_Chr1g0208161 100.000 117 0 0 1 117 463 579 5.92e-77 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347620 AT3G19490.1 89.655 116 12 0 2 117 461 576 1.60e-60 194
Msa1347620 AT1G49810.1 82.653 98 17 0 2 99 320 417 5.38e-55 177

Find 58 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCATGCATCACATTTAA+AGG 0.193375 tig0009881:+18162 None:intergenic
GGCGGATCCATGTTGGTTAT+TGG 0.232127 tig0009881:-18851 Msa1347620:CDS
AGCTGCTGGAGTTGCATTTA+TGG 0.234796 tig0009881:-18825 Msa1347620:CDS
TGGAAAAGGTGGACTTCTTT+TGG 0.286827 tig0009881:-18799 Msa1347620:CDS
TCCCTCAAGATTCTGAGTTC+TGG 0.305561 tig0009881:-18901 Msa1347620:CDS
TATGCAAATACTTCATTTGC+TGG 0.307818 tig0009881:+18192 None:intergenic
TTTATATGTGCGTATGTATA+GGG 0.316779 tig0009881:-18409 Msa1347620:three_prime_UTR
GCAATATCAGCTATGGGTTT+GGG 0.337767 tig0009881:-18385 Msa1347620:three_prime_UTR
GGAACCTCAGCTAGAGTTGT+AGG 0.345612 tig0009881:+18574 None:intergenic
GCTGCTGGAGTTGCATTTAT+GGG 0.350491 tig0009881:-18824 Msa1347620:CDS
TTGGTTATTGGCTCAGCTGC+TGG 0.361717 tig0009881:-18839 Msa1347620:CDS
TTAAGATTAATTCCTCTCAT+TGG 0.362885 tig0009881:-18313 Msa1347620:three_prime_UTR
AGATTCTGAGTTCTGGCAAT+TGG 0.375577 tig0009881:-18894 Msa1347620:CDS
AGCAATATCAGCTATGGGTT+TGG 0.382993 tig0009881:-18386 Msa1347620:three_prime_UTR
TACATTGTAGGAACAATATC+CGG 0.387143 tig0009881:+18283 None:intergenic
CCATGCATTGTAAGATTGAA+TGG 0.402714 tig0009881:-18336 Msa1347620:three_prime_UTR
CATGTTGCAAATAATATCTC+AGG 0.408121 tig0009881:+18239 None:intergenic
TCCATTGGTTGCTGCAACAA+TGG 0.429659 tig0009881:-18945 Msa1347620:CDS
TGCATTTATGGGGATGGAAA+AGG 0.452403 tig0009881:-18813 Msa1347620:CDS
TGAGTCGTGGCACCAAAAGC+AGG 0.458487 tig0009881:-18510 Msa1347620:three_prime_UTR
ATTCCCTTTGTGCAGGTTAG+CGG 0.473308 tig0009881:-18667 Msa1347620:intron
CCATTCAATCTTACAATGCA+TGG 0.475668 tig0009881:+18336 None:intergenic
AATTATAGACAATGTTCCAT+TGG 0.484938 tig0009881:-18960 Msa1347620:CDS
GCCAGAACTCAGAATCTTGA+GGG 0.499442 tig0009881:+18881 None:intergenic
CCCATTGTTGCAGCAACCAA+TGG 0.502260 tig0009881:+18925 None:intergenic
GAACCTTTAAATGTGATGCA+TGG 0.507806 tig0009881:-18165 Msa1347620:three_prime_UTR
TCCTCTCATTGGATTCGTCC+CGG 0.512118 tig0009881:-18302 Msa1347620:three_prime_UTR
TTTCAAGAACCAGAAAGAAA+AGG 0.516576 tig0009881:+18553 None:intergenic
ATGCAAATACTTCATTTGCT+GGG 0.517968 tig0009881:+18193 None:intergenic
CATGACATGAGGTACATTGT+AGG 0.519646 tig0009881:+18271 None:intergenic
CCATTGGTTGCTGCAACAAT+GGG 0.519864 tig0009881:-18944 Msa1347620:CDS
AACCTTTAAATGTGATGCAT+GGG 0.526705 tig0009881:-18164 Msa1347620:three_prime_UTR
TTGTAGGGAGGGAAATGTTG+AGG 0.528310 tig0009881:+18590 None:intergenic
ATAGGGAGCAATATCAGCTA+TGG 0.532749 tig0009881:-18392 Msa1347620:three_prime_UTR
TTCAGACTTCATTTGAGTCG+TGG 0.562435 tig0009881:-18523 Msa1347620:three_prime_UTR
TCAATCTTACAATGCATGGA+TGG 0.566386 tig0009881:+18340 None:intergenic
GAACCTCAGCTAGAGTTGTA+GGG 0.569832 tig0009881:+18575 None:intergenic
GAGATATTATTTGCAACATG+AGG 0.571301 tig0009881:-18236 Msa1347620:three_prime_UTR
CCTCCCTACAACTCTAGCTG+AGG 0.573285 tig0009881:-18578 Msa1347620:CDS
CTGCTGGAGTTGCATTTATG+GGG 0.582573 tig0009881:-18823 Msa1347620:CDS
GAGGTGAGATAAGCTCATCT+TGG 0.584871 tig0009881:-18363 Msa1347620:three_prime_UTR
ACATTGTAGGAACAATATCC+GGG 0.590183 tig0009881:+18284 None:intergenic
TAGGGAGCAATATCAGCTAT+GGG 0.590261 tig0009881:-18391 Msa1347620:three_prime_UTR
TTCGTAGTGCAAGTTGCCAT+AGG 0.594957 tig0009881:-18458 Msa1347620:three_prime_UTR
TGCCAGAACTCAGAATCTTG+AGG 0.596801 tig0009881:+18880 None:intergenic
TGGAGTTGCATTTATGGGGA+TGG 0.598744 tig0009881:-18819 Msa1347620:CDS
GAGTCGTGGCACCAAAAGCA+GGG 0.599043 tig0009881:-18509 Msa1347620:three_prime_UTR
CTCAGCTAGAGTTGTAGGGA+GGG 0.610550 tig0009881:+18579 None:intergenic
CAATGTACCTCATGTCATGT+CGG 0.612896 tig0009881:-18267 Msa1347620:three_prime_UTR
ATGTTGCAAATAATATCTCA+GGG 0.632986 tig0009881:+18240 None:intergenic
CCTCAGCTAGAGTTGTAGGG+AGG 0.650975 tig0009881:+18578 None:intergenic
ATTTATGGGGATGGAAAAGG+TGG 0.651654 tig0009881:-18810 Msa1347620:CDS
ATATCAGCTATGGGTTTGGG+AGG 0.651782 tig0009881:-18382 Msa1347620:three_prime_UTR
TCCGGGACGAATCCAATGAG+AGG 0.661372 tig0009881:+18301 None:intergenic
TGGTACTGGCGGATCCATGT+TGG 0.678869 tig0009881:-18858 Msa1347620:CDS
AGCTGAGCCAATAACCAACA+TGG 0.679374 tig0009881:+18825 None:intergenic
GGGCATTCCGACATGACATG+AGG 0.684902 tig0009881:+18260 None:intergenic
GTTATGAACAGCTAAATACG+CGG 0.773358 tig0009881:+18612 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAAATAATGAATATTTTT+TGG + tig0009881:18967-18986 None:intergenic 10.0%
!!! ATGAAATAATGAATATTTTT+TGG + tig0009881:18967-18986 None:intergenic 10.0%
!! AATTATATCTAGTGAAAAGT+AGG + tig0009881:18330-18349 None:intergenic 20.0%
!! AATTATATCTAGTGAAAAGT+AGG + tig0009881:18330-18349 None:intergenic 20.0%
! AATTATAGACAATGTTCCAT+TGG - tig0009881:18125-18144 Msa1347620:three_prime_UTR 25.0%
!!! CTTCTTTTGGTACTTTAAAA+AGG - tig0009881:18299-18318 Msa1347620:three_prime_UTR 25.0%
! ATGACAAAAATCATAACCTA+TGG + tig0009881:18627-18646 None:intergenic 25.0%
!! TTTTATATGTGCGTATGTAT+AGG - tig0009881:18656-18675 Msa1347620:intron 25.0%
! TTTATATGTGCGTATGTATA+GGG - tig0009881:18657-18676 Msa1347620:intron 25.0%
! TTAAGATTAATTCCTCTCAT+TGG - tig0009881:18753-18772 Msa1347620:intron 25.0%
! ATGTTGCAAATAATATCTCA+GGG + tig0009881:18829-18848 None:intergenic 25.0%
! AATTATAGACAATGTTCCAT+TGG - tig0009881:18125-18144 Msa1347620:three_prime_UTR 25.0%
!!! CTTCTTTTGGTACTTTAAAA+AGG - tig0009881:18299-18318 Msa1347620:three_prime_UTR 25.0%
! ATGACAAAAATCATAACCTA+TGG + tig0009881:18627-18646 None:intergenic 25.0%
!! TTTTATATGTGCGTATGTAT+AGG - tig0009881:18656-18675 Msa1347620:intron 25.0%
! TTTATATGTGCGTATGTATA+GGG - tig0009881:18657-18676 Msa1347620:intron 25.0%
! TTAAGATTAATTCCTCTCAT+TGG - tig0009881:18753-18772 Msa1347620:intron 25.0%
! ATGTTGCAAATAATATCTCA+GGG + tig0009881:18829-18848 None:intergenic 25.0%
TTTCAAGAACCAGAAAGAAA+AGG + tig0009881:18516-18535 None:intergenic 30.0%
! ATGATTTTTGTCATGACAAG+AGG - tig0009881:18633-18652 Msa1347620:CDS 30.0%
TACATTGTAGGAACAATATC+CGG + tig0009881:18786-18805 None:intergenic 30.0%
CATGTTGCAAATAATATCTC+AGG + tig0009881:18830-18849 None:intergenic 30.0%
GAGATATTATTTGCAACATG+AGG - tig0009881:18830-18849 Msa1347620:CDS 30.0%
ATGCAAATACTTCATTTGCT+GGG + tig0009881:18876-18895 None:intergenic 30.0%
TATGCAAATACTTCATTTGC+TGG + tig0009881:18877-18896 None:intergenic 30.0%
AACCTTTAAATGTGATGCAT+GGG - tig0009881:18902-18921 Msa1347620:CDS 30.0%
TTTCAAGAACCAGAAAGAAA+AGG + tig0009881:18516-18535 None:intergenic 30.0%
! ATGATTTTTGTCATGACAAG+AGG - tig0009881:18633-18652 Msa1347620:CDS 30.0%
TACATTGTAGGAACAATATC+CGG + tig0009881:18786-18805 None:intergenic 30.0%
CATGTTGCAAATAATATCTC+AGG + tig0009881:18830-18849 None:intergenic 30.0%
GAGATATTATTTGCAACATG+AGG - tig0009881:18830-18849 Msa1347620:CDS 30.0%
ATGCAAATACTTCATTTGCT+GGG + tig0009881:18876-18895 None:intergenic 30.0%
TATGCAAATACTTCATTTGC+TGG + tig0009881:18877-18896 None:intergenic 30.0%
AACCTTTAAATGTGATGCAT+GGG - tig0009881:18902-18921 Msa1347620:CDS 30.0%
ACAAAGGGAATAAACGACAT+CGG + tig0009881:18390-18409 None:intergenic 35.0%
GTTATGAACAGCTAAATACG+CGG + tig0009881:18457-18476 None:intergenic 35.0%
TCAATCTTACAATGCATGGA+TGG + tig0009881:18729-18748 None:intergenic 35.0%
CCATTCAATCTTACAATGCA+TGG + tig0009881:18733-18752 None:intergenic 35.0%
CCATGCATTGTAAGATTGAA+TGG - tig0009881:18730-18749 Msa1347620:intron 35.0%
ACATTGTAGGAACAATATCC+GGG + tig0009881:18785-18804 None:intergenic 35.0%
GAACCTTTAAATGTGATGCA+TGG - tig0009881:18901-18920 Msa1347620:CDS 35.0%
ATCCCATGCATCACATTTAA+AGG + tig0009881:18907-18926 None:intergenic 35.0%
ACAAAGGGAATAAACGACAT+CGG + tig0009881:18390-18409 None:intergenic 35.0%
GTTATGAACAGCTAAATACG+CGG + tig0009881:18457-18476 None:intergenic 35.0%
TCAATCTTACAATGCATGGA+TGG + tig0009881:18729-18748 None:intergenic 35.0%
CCATTCAATCTTACAATGCA+TGG + tig0009881:18733-18752 None:intergenic 35.0%
CCATGCATTGTAAGATTGAA+TGG - tig0009881:18730-18749 Msa1347620:intron 35.0%
ACATTGTAGGAACAATATCC+GGG + tig0009881:18785-18804 None:intergenic 35.0%
GAACCTTTAAATGTGATGCA+TGG - tig0009881:18901-18920 Msa1347620:CDS 35.0%
ATCCCATGCATCACATTTAA+AGG + tig0009881:18907-18926 None:intergenic 35.0%
GAACTGATTGCAAGTGCTAT+TGG - tig0009881:18090-18109 Msa1347620:three_prime_UTR 40.0%
! AGATTCTGAGTTCTGGCAAT+TGG - tig0009881:18191-18210 Msa1347620:three_prime_UTR 40.0%
! CAATTGGTTGCATTTTGTGC+TGG - tig0009881:18207-18226 Msa1347620:three_prime_UTR 40.0%
TGCATTTATGGGGATGGAAA+AGG - tig0009881:18272-18291 Msa1347620:three_prime_UTR 40.0%
ATTTATGGGGATGGAAAAGG+TGG - tig0009881:18275-18294 Msa1347620:three_prime_UTR 40.0%
!! TGGAAAAGGTGGACTTCTTT+TGG - tig0009881:18286-18305 Msa1347620:three_prime_UTR 40.0%
TTCAGACTTCATTTGAGTCG+TGG - tig0009881:18543-18562 Msa1347620:exon 40.0%
!!! TTTTGAGACAACCCTGCTTT+TGG + tig0009881:18571-18590 None:intergenic 40.0%
ATAGGGAGCAATATCAGCTA+TGG - tig0009881:18674-18693 Msa1347620:intron 40.0%
TAGGGAGCAATATCAGCTAT+GGG - tig0009881:18675-18694 Msa1347620:intron 40.0%
AGCAATATCAGCTATGGGTT+TGG - tig0009881:18680-18699 Msa1347620:intron 40.0%
GCAATATCAGCTATGGGTTT+GGG - tig0009881:18681-18700 Msa1347620:intron 40.0%
CATGACATGAGGTACATTGT+AGG + tig0009881:18798-18817 None:intergenic 40.0%
CAATGTACCTCATGTCATGT+CGG - tig0009881:18799-18818 Msa1347620:CDS 40.0%
GAACTGATTGCAAGTGCTAT+TGG - tig0009881:18090-18109 Msa1347620:three_prime_UTR 40.0%
! AGATTCTGAGTTCTGGCAAT+TGG - tig0009881:18191-18210 Msa1347620:three_prime_UTR 40.0%
! CAATTGGTTGCATTTTGTGC+TGG - tig0009881:18207-18226 Msa1347620:three_prime_UTR 40.0%
TGCATTTATGGGGATGGAAA+AGG - tig0009881:18272-18291 Msa1347620:three_prime_UTR 40.0%
ATTTATGGGGATGGAAAAGG+TGG - tig0009881:18275-18294 Msa1347620:three_prime_UTR 40.0%
!! TGGAAAAGGTGGACTTCTTT+TGG - tig0009881:18286-18305 Msa1347620:three_prime_UTR 40.0%
TTCAGACTTCATTTGAGTCG+TGG - tig0009881:18543-18562 Msa1347620:exon 40.0%
!!! TTTTGAGACAACCCTGCTTT+TGG + tig0009881:18571-18590 None:intergenic 40.0%
ATAGGGAGCAATATCAGCTA+TGG - tig0009881:18674-18693 Msa1347620:intron 40.0%
TAGGGAGCAATATCAGCTAT+GGG - tig0009881:18675-18694 Msa1347620:intron 40.0%
AGCAATATCAGCTATGGGTT+TGG - tig0009881:18680-18699 Msa1347620:intron 40.0%
GCAATATCAGCTATGGGTTT+GGG - tig0009881:18681-18700 Msa1347620:intron 40.0%
CATGACATGAGGTACATTGT+AGG + tig0009881:18798-18817 None:intergenic 40.0%
CAATGTACCTCATGTCATGT+CGG - tig0009881:18799-18818 Msa1347620:CDS 40.0%
! TCCATTGGTTGCTGCAACAA+TGG - tig0009881:18140-18159 Msa1347620:three_prime_UTR 45.0%
! CCATTGGTTGCTGCAACAAT+GGG - tig0009881:18141-18160 Msa1347620:three_prime_UTR 45.0%
TCCCTCAAGATTCTGAGTTC+TGG - tig0009881:18184-18203 Msa1347620:three_prime_UTR 45.0%
GCCAGAACTCAGAATCTTGA+GGG + tig0009881:18188-18207 None:intergenic 45.0%
TGCCAGAACTCAGAATCTTG+AGG + tig0009881:18189-18208 None:intergenic 45.0%
!! GTTGCATTTTGTGCTGGTAC+TGG - tig0009881:18213-18232 Msa1347620:three_prime_UTR 45.0%
AGCTGAGCCAATAACCAACA+TGG + tig0009881:18244-18263 None:intergenic 45.0%
AGCTGCTGGAGTTGCATTTA+TGG - tig0009881:18260-18279 Msa1347620:three_prime_UTR 45.0%
GCTGCTGGAGTTGCATTTAT+GGG - tig0009881:18261-18280 Msa1347620:three_prime_UTR 45.0%
CTGCTGGAGTTGCATTTATG+GGG - tig0009881:18262-18281 Msa1347620:three_prime_UTR 45.0%
TGGAGTTGCATTTATGGGGA+TGG - tig0009881:18266-18285 Msa1347620:three_prime_UTR 45.0%
GTCGTTTATTCCCTTTGTGC+AGG - tig0009881:18392-18411 Msa1347620:three_prime_UTR 45.0%
ATTCCCTTTGTGCAGGTTAG+CGG - tig0009881:18399-18418 Msa1347620:three_prime_UTR 45.0%
TTGTAGGGAGGGAAATGTTG+AGG + tig0009881:18479-18498 None:intergenic 45.0%
GAACCTCAGCTAGAGTTGTA+GGG + tig0009881:18494-18513 None:intergenic 45.0%
! GCTGAGGTTCCTTTTCTTTC+TGG - tig0009881:18504-18523 Msa1347620:three_prime_UTR 45.0%
TTCGTAGTGCAAGTTGCCAT+AGG - tig0009881:18608-18627 Msa1347620:CDS 45.0%
ATATCAGCTATGGGTTTGGG+AGG - tig0009881:18684-18703 Msa1347620:intron 45.0%
GAGGTGAGATAAGCTCATCT+TGG - tig0009881:18703-18722 Msa1347620:intron 45.0%
! TCCATTGGTTGCTGCAACAA+TGG - tig0009881:18140-18159 Msa1347620:three_prime_UTR 45.0%
! CCATTGGTTGCTGCAACAAT+GGG - tig0009881:18141-18160 Msa1347620:three_prime_UTR 45.0%
TCCCTCAAGATTCTGAGTTC+TGG - tig0009881:18184-18203 Msa1347620:three_prime_UTR 45.0%
GCCAGAACTCAGAATCTTGA+GGG + tig0009881:18188-18207 None:intergenic 45.0%
TGCCAGAACTCAGAATCTTG+AGG + tig0009881:18189-18208 None:intergenic 45.0%
!! GTTGCATTTTGTGCTGGTAC+TGG - tig0009881:18213-18232 Msa1347620:three_prime_UTR 45.0%
AGCTGAGCCAATAACCAACA+TGG + tig0009881:18244-18263 None:intergenic 45.0%
AGCTGCTGGAGTTGCATTTA+TGG - tig0009881:18260-18279 Msa1347620:three_prime_UTR 45.0%
GCTGCTGGAGTTGCATTTAT+GGG - tig0009881:18261-18280 Msa1347620:three_prime_UTR 45.0%
CTGCTGGAGTTGCATTTATG+GGG - tig0009881:18262-18281 Msa1347620:three_prime_UTR 45.0%
TGGAGTTGCATTTATGGGGA+TGG - tig0009881:18266-18285 Msa1347620:three_prime_UTR 45.0%
GTCGTTTATTCCCTTTGTGC+AGG - tig0009881:18392-18411 Msa1347620:three_prime_UTR 45.0%
ATTCCCTTTGTGCAGGTTAG+CGG - tig0009881:18399-18418 Msa1347620:three_prime_UTR 45.0%
TTGTAGGGAGGGAAATGTTG+AGG + tig0009881:18479-18498 None:intergenic 45.0%
GAACCTCAGCTAGAGTTGTA+GGG + tig0009881:18494-18513 None:intergenic 45.0%
! GCTGAGGTTCCTTTTCTTTC+TGG - tig0009881:18504-18523 Msa1347620:three_prime_UTR 45.0%
TTCGTAGTGCAAGTTGCCAT+AGG - tig0009881:18608-18627 Msa1347620:CDS 45.0%
ATATCAGCTATGGGTTTGGG+AGG - tig0009881:18684-18703 Msa1347620:intron 45.0%
GAGGTGAGATAAGCTCATCT+TGG - tig0009881:18703-18722 Msa1347620:intron 45.0%
CCCATTGTTGCAGCAACCAA+TGG + tig0009881:18144-18163 None:intergenic 50.0%
!! GCATTTTGTGCTGGTACTGG+CGG - tig0009881:18216-18235 Msa1347620:three_prime_UTR 50.0%
! GGCGGATCCATGTTGGTTAT+TGG - tig0009881:18234-18253 Msa1347620:three_prime_UTR 50.0%
!! TTGGTTATTGGCTCAGCTGC+TGG - tig0009881:18246-18265 Msa1347620:three_prime_UTR 50.0%
AAGCCGCTAACCTGCACAAA+GGG + tig0009881:18405-18424 None:intergenic 50.0%
AAAGCCGCTAACCTGCACAA+AGG + tig0009881:18406-18425 None:intergenic 50.0%
!! GTTAGCGGCTTTGCTTTTGC+AGG - tig0009881:18414-18433 Msa1347620:three_prime_UTR 50.0%
! GCTTTTGCAGGTTATGCTGC+AGG - tig0009881:18426-18445 Msa1347620:three_prime_UTR 50.0%
CTCAGCTAGAGTTGTAGGGA+GGG + tig0009881:18490-18509 None:intergenic 50.0%
GGAACCTCAGCTAGAGTTGT+AGG + tig0009881:18495-18514 None:intergenic 50.0%
TCCTCTCATTGGATTCGTCC+CGG - tig0009881:18764-18783 Msa1347620:intron 50.0%
CCCATTGTTGCAGCAACCAA+TGG + tig0009881:18144-18163 None:intergenic 50.0%
!! GCATTTTGTGCTGGTACTGG+CGG - tig0009881:18216-18235 Msa1347620:three_prime_UTR 50.0%
! GGCGGATCCATGTTGGTTAT+TGG - tig0009881:18234-18253 Msa1347620:three_prime_UTR 50.0%
!! TTGGTTATTGGCTCAGCTGC+TGG - tig0009881:18246-18265 Msa1347620:three_prime_UTR 50.0%
AAGCCGCTAACCTGCACAAA+GGG + tig0009881:18405-18424 None:intergenic 50.0%
AAAGCCGCTAACCTGCACAA+AGG + tig0009881:18406-18425 None:intergenic 50.0%
!! GTTAGCGGCTTTGCTTTTGC+AGG - tig0009881:18414-18433 Msa1347620:three_prime_UTR 50.0%
! GCTTTTGCAGGTTATGCTGC+AGG - tig0009881:18426-18445 Msa1347620:three_prime_UTR 50.0%
CTCAGCTAGAGTTGTAGGGA+GGG + tig0009881:18490-18509 None:intergenic 50.0%
GGAACCTCAGCTAGAGTTGT+AGG + tig0009881:18495-18514 None:intergenic 50.0%
TCCTCTCATTGGATTCGTCC+CGG - tig0009881:18764-18783 Msa1347620:intron 50.0%
!! TGGTACTGGCGGATCCATGT+TGG - tig0009881:18227-18246 Msa1347620:three_prime_UTR 55.0%
CCTCAGCTAGAGTTGTAGGG+AGG + tig0009881:18491-18510 None:intergenic 55.0%
CCTCCCTACAACTCTAGCTG+AGG - tig0009881:18488-18507 Msa1347620:three_prime_UTR 55.0%
TGAGTCGTGGCACCAAAAGC+AGG - tig0009881:18556-18575 Msa1347620:CDS 55.0%
GAGTCGTGGCACCAAAAGCA+GGG - tig0009881:18557-18576 Msa1347620:CDS 55.0%
TCCGGGACGAATCCAATGAG+AGG + tig0009881:18768-18787 None:intergenic 55.0%
GGGCATTCCGACATGACATG+AGG + tig0009881:18809-18828 None:intergenic 55.0%
!! TGGTACTGGCGGATCCATGT+TGG - tig0009881:18227-18246 Msa1347620:three_prime_UTR 55.0%
CCTCAGCTAGAGTTGTAGGG+AGG + tig0009881:18491-18510 None:intergenic 55.0%
CCTCCCTACAACTCTAGCTG+AGG - tig0009881:18488-18507 Msa1347620:three_prime_UTR 55.0%
TGAGTCGTGGCACCAAAAGC+AGG - tig0009881:18556-18575 Msa1347620:CDS 55.0%
GAGTCGTGGCACCAAAAGCA+GGG - tig0009881:18557-18576 Msa1347620:CDS 55.0%
TCCGGGACGAATCCAATGAG+AGG + tig0009881:18768-18787 None:intergenic 55.0%
GGGCATTCCGACATGACATG+AGG + tig0009881:18809-18828 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0009881 gene 18087 19001 18087 ID=Msa1347620;Name=Msa1347620
tig0009881 mRNA 18087 19001 18087 ID=Msa1347620-mRNA-1;Parent=Msa1347620;Name=Msa1347620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|468|117
tig0009881 exon 18087 18674 18087 ID=Msa1347620-mRNA-1:exon:5979;Parent=Msa1347620-mRNA-1
tig0009881 exon 18768 19001 18768 ID=Msa1347620-mRNA-1:exon:5978;Parent=Msa1347620-mRNA-1
tig0009881 CDS 18768 19001 18768 ID=Msa1347620-mRNA-1:cds;Parent=Msa1347620-mRNA-1
tig0009881 CDS 18555 18674 18555 ID=Msa1347620-mRNA-1:cds;Parent=Msa1347620-mRNA-1
tig0009881 three_prime_UTR 18087 18554 18087 ID=Msa1347620-mRNA-1:three_prime_utr;Parent=Msa1347620-mRNA-1
Gene Sequence

>Msa1347620

AGTGAACTGATTGCAAGTGCTATTGGAGTCATATCTGCAATTATAGACAATGTTCCATTGGTTGCTGCAACAATGGGAATGTACGACGTCACTTCTTTCCCTCAAGATTCTGAGTTCTGGCAATTGGTTGCATTTTGTGCTGGTACTGGCGGATCCATGTTGGTTATTGGCTCAGCTGCTGGAGTTGCATTTATGGGGATGGAAAAGGTGGACTTCTTTTGGTACTTTAAAAAGGTTAGCGGCTTTGCTTTTGCAGGTTATGCTGCAGGTATTGCCGCGTATTTAGCTGTTCATAACCTCAACATTTCCCTCCCTACAACTCTAGCTGAGGTTCCTTTTCTTTCTGGTTCTTGA

Protein sequence

>Msa1347620

SELIASAIGVISAIIDNVPLVAATMGMYDVTSFPQDSEFWQLVAFCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYFKKVSGFAFAGYAAGIAAYLAVHNLNISLPTTLAEVPFLSGS*