AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0950410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950410 MtrunA17_Chr6g0466681 96.812 345 11 0 1 345 1 345 0.0 696
Msa0950410 MtrunA17_Chr6g0470321 31.801 261 161 7 66 310 37 296 6.23e-30 116
Msa0950410 MtrunA17_Chr6g0470501 29.615 260 168 6 66 310 56 315 9.07e-28 111
Msa0950410 MtrunA17_Chr1g0202931 29.730 296 178 9 43 316 4 291 1.11e-26 107
Msa0950410 MtrunA17_Chr4g0058731 28.302 318 192 10 24 314 1 309 3.42e-26 107
Msa0950410 MtrunA17_Chr1g0202871 28.244 262 166 5 66 310 29 285 5.91e-26 105
Msa0950410 MtrunA17_Chr8g0388831 28.929 280 180 8 52 313 19 297 1.33e-24 102
Msa0950410 MtrunA17_Chr1g0202891 28.516 256 169 6 66 308 29 283 4.85e-24 100
Msa0950410 MtrunA17_Chr8g0386971 28.185 259 172 6 69 314 32 289 1.06e-23 99.4
Msa0950410 MtrunA17_Chr1g0182541 27.915 283 185 7 70 333 38 320 7.26e-23 97.4
Msa0950410 MtrunA17_Chr7g0262941 27.308 260 170 5 70 313 38 294 1.32e-22 96.7
Msa0950410 MtrunA17_Chr1g0202861 27.915 283 188 7 43 310 45 326 1.89e-20 90.9
Msa0950410 MtrunA17_Chr3g0117241 34.211 114 75 0 66 179 37 150 3.15e-16 75.1
Msa0950410 MtrunA17_Chr8g0355281 36.559 93 59 0 62 154 67 159 8.16e-13 68.6
Msa0950410 MtrunA17_Chr6g0481311 26.613 248 162 9 69 299 64 308 1.19e-12 68.2
Msa0950410 MtrunA17_Chr8g0349751 25.532 329 178 12 35 309 27 342 1.22e-12 68.2
Msa0950410 MtrunA17_Chr2g0317921 26.556 241 141 8 57 266 78 313 4.09e-12 66.6
Msa0950410 MtrunA17_Chr7g0239451 28.488 172 109 5 66 231 18 181 1.56e-11 63.9
Msa0950410 MtrunA17_Chr3g0112151 31.395 172 93 6 64 215 86 252 1.78e-11 64.7
Msa0950410 MtrunA17_Chr3g0112271 27.843 255 152 8 64 305 17 252 3.79e-11 62.8
Msa0950410 MtrunA17_Chr7g0239501 28.947 190 119 6 54 237 8 187 8.32e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950410 AT4G09750.1 77.259 321 73 0 24 344 1 321 0.0 539
Msa0950410 AT5G50130.1 31.439 264 155 9 70 313 40 297 4.79e-29 115
Msa0950410 AT5G50130.7 31.179 263 155 9 71 313 8 264 2.25e-28 112
Msa0950410 AT5G50130.8 31.061 264 153 10 71 313 8 263 3.16e-27 109
Msa0950410 AT4G11410.1 29.572 257 169 5 66 310 29 285 5.87e-26 106
Msa0950410 AT4G24050.1 29.153 295 186 9 52 326 19 310 8.55e-26 105
Msa0950410 AT5G50130.4 31.250 224 132 7 70 277 40 257 6.58e-25 103
Msa0950410 AT5G50130.3 30.263 228 135 7 70 282 40 258 7.74e-25 101
Msa0950410 AT5G50130.5 31.330 233 135 8 71 284 8 234 3.05e-24 100
Msa0950410 AT4G23420.1 29.278 263 163 7 66 310 29 286 7.08e-24 100
Msa0950410 AT4G23420.2 29.278 263 163 7 66 310 29 286 7.08e-24 100
Msa0950410 AT4G23420.3 29.278 263 163 7 66 310 46 303 7.42e-24 100
Msa0950410 AT5G50130.2 31.111 225 130 8 70 277 40 256 9.21e-24 100
Msa0950410 AT5G50130.9 30.131 229 133 8 70 282 40 257 1.17e-23 98.6
Msa0950410 AT4G23430.2 27.969 261 169 6 66 310 29 286 1.63e-23 99.4
Msa0950410 AT5G50130.6 31.197 234 133 9 71 284 8 233 3.79e-23 97.8
Msa0950410 AT4G11410.2 29.557 203 134 3 66 259 29 231 4.61e-23 97.1
Msa0950410 AT4G23430.1 27.027 259 172 5 66 310 29 284 4.89e-22 95.5
Msa0950410 AT4G24050.2 29.464 224 146 5 52 263 19 242 5.89e-22 94.4
Msa0950410 AT4G23420.4 30.542 203 132 4 66 259 29 231 1.16e-20 90.5
Msa0950410 AT4G23420.5 30.542 203 132 4 66 259 29 231 1.76e-20 90.1
Msa0950410 AT2G37540.1 29.615 260 159 7 69 310 36 289 1.84e-20 90.9
Msa0950410 AT4G23430.4 27.237 257 166 5 66 310 29 276 2.34e-20 90.5
Msa0950410 AT1G64590.1 26.136 264 172 6 70 314 38 297 2.00e-19 88.2
Msa0950410 AT5G02540.1 27.237 257 168 6 83 323 50 303 5.90e-19 86.7
Msa0950410 AT4G23430.3 26.667 255 168 5 66 310 29 274 7.40e-19 86.3
Msa0950410 AT2G37540.2 39.231 130 74 3 69 197 36 161 6.65e-18 82.8
Msa0950410 AT5G61830.1 27.875 287 153 9 69 313 39 313 1.07e-15 77.4
Msa0950410 AT5G61830.2 27.875 287 153 9 69 313 39 313 1.07e-15 77.4
Msa0950410 AT3G59710.3 26.966 267 161 10 70 309 22 281 1.85e-15 76.3
Msa0950410 AT3G59710.2 26.966 267 161 10 70 309 51 310 2.28e-15 76.3
Msa0950410 AT3G59710.1 27.341 267 160 11 70 309 32 291 3.76e-15 75.5
Msa0950410 AT5G15940.3 28.000 275 152 9 69 309 63 325 6.92e-15 75.5
Msa0950410 AT5G15940.2 28.000 275 152 9 69 309 63 325 6.92e-15 75.5
Msa0950410 AT5G15940.1 28.000 275 152 9 69 309 62 324 7.21e-15 75.1
Msa0950410 AT5G04070.1 26.545 275 156 7 69 309 61 323 8.65e-14 72.0
Msa0950410 AT5G15940.4 27.099 262 147 8 69 296 63 314 1.26e-12 68.2
Msa0950410 AT4G27760.1 28.251 223 138 8 30 239 25 238 3.06e-12 67.4
Msa0950410 AT5G53090.1 26.255 259 169 7 69 317 59 305 1.70e-11 65.1
Msa0950410 AT1G01800.1 25.503 298 152 10 70 312 8 290 9.09e-11 62.4
Msa0950410 AT2G29340.3 28.846 208 122 8 64 264 7 195 9.17e-11 61.2
Msa0950410 AT2G29340.4 28.846 208 122 8 64 264 7 195 9.17e-11 61.2

Find 91 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTGCCTTTGGTGTTTA+TGG 0.102528 6_3:-38779619 Msa0950410:CDS
ATGATTACTTACAACATTTA+AGG 0.105302 6_3:+38774064 None:intergenic
GATATAACTGTCGCTAATTT+TGG 0.137780 6_3:+38774013 None:intergenic
GCATCTCTTTCGGCTTAAAT+AGG 0.200335 6_3:-38774252 Msa0950410:exon
TGGCAATCAAAATGTGTATT+TGG 0.232872 6_3:-38777208 Msa0950410:CDS
ACTTATTCATATACAGCTTT+AGG 0.239146 6_3:+38773947 None:intergenic
TATTCCGAGAGCAGCTTTAA+TGG 0.263425 6_3:-38775661 Msa0950410:CDS
AGGTTGCACTAACAGAAAAT+TGG 0.277567 6_3:-38774912 Msa0950410:CDS
TGTATATGAATAAGTTTCTA+TGG 0.278574 6_3:-38773939 Msa0950410:three_prime_UTR
TGTGAGAGATACAATGTTAA+TGG 0.285758 6_3:+38779755 None:intergenic
CTAATTAATTACAGGCTTGC+AGG 0.288075 6_3:-38774459 Msa0950410:intron
GTAATCATAGAACCTGTTTC+AGG 0.297564 6_3:-38774049 Msa0950410:three_prime_UTR
ATATCAAGTCACTGGCTTCC+AGG 0.314845 6_3:-38776721 Msa0950410:CDS
TCGATCCTTGGCATCTCTTT+CGG 0.317606 6_3:-38774262 Msa0950410:CDS
AGCATTAAATGAAAGGTGTT+TGG 0.325335 6_3:+38774329 None:intergenic
CACAGTTACCTGTAGATCTT+TGG 0.325674 6_3:+38775753 None:intergenic
TCCCAAATTCAGACTAAAAC+TGG 0.331943 6_3:-38777228 Msa0950410:CDS
CGTGTCATTACTGTTTCTTC+TGG 0.335143 6_3:-38775799 Msa0950410:CDS
AACTTTGCTGTCAATGTATT+AGG 0.347400 6_3:-38775880 Msa0950410:CDS
CTATCTTGTATGTCGTAATA+AGG 0.351461 6_3:-38777271 Msa0950410:CDS
TGAATTGATGGTACCGTTAC+TGG 0.361549 6_3:-38775842 Msa0950410:CDS
CATCTCTTTCGGCTTAAATA+GGG 0.363821 6_3:-38774251 Msa0950410:exon
TTAGGAAAATGTACACTTCA+TGG 0.364230 6_3:+38773965 None:intergenic
CCAGATACCAACTTCTCCTT+TGG 0.367870 6_3:+38774381 None:intergenic
AAGGCGCGGACACGGTTATC+TGG 0.368865 6_3:-38774416 Msa0950410:CDS
GGTTGCACTAACAGAAAATT+GGG 0.372940 6_3:-38774911 Msa0950410:CDS
TTACGCCATGACTGAATTGA+TGG 0.373220 6_3:-38775854 Msa0950410:CDS
TGCTCGAAACAAGCGTGTTC+AGG 0.379609 6_3:-38775626 Msa0950410:intron
CATTGATAGTCTTCGATCCT+TGG 0.381103 6_3:-38774274 Msa0950410:CDS
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6_3:-38774381 Msa0950410:CDS
GCATTAAATGAAAGGTGTTT+GGG 0.399601 6_3:+38774330 None:intergenic
TGCATCAAGGTTAACAATGC+TGG 0.401264 6_3:-38776279 Msa0950410:intron
ATTCCGAGAGCAGCTTTAAT+GGG 0.404809 6_3:-38775660 Msa0950410:CDS
GGGAAGAATTGCATTGTAAC+AGG 0.410191 6_3:-38777444 Msa0950410:CDS
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6_3:+38777471 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6_3:-38774844 Msa0950410:CDS
ACAGGAGCAAACTCTGGAAT+TGG 0.413799 6_3:-38777426 Msa0950410:CDS
ACAGTAATGACACGTGCATC+AGG 0.419282 6_3:+38775808 None:intergenic
TACTTCTGCGCTAAACAGTT+AGG 0.427598 6_3:-38774224 Msa0950410:three_prime_UTR
AACATACAGAAAAGCAGGTT+TGG 0.430258 6_3:+38779582 None:intergenic
TTACTCGATGCATCCAGGTT+GGG 0.430651 6_3:-38774857 Msa0950410:CDS
AATGCTATATTACCTGAAAC+AGG 0.435344 6_3:+38774037 None:intergenic
TAATTTACCAACACGTGCAC+TGG 0.441948 6_3:+38776680 None:intergenic
GTCATTACTGTTTCTTCTGG+TGG 0.452728 6_3:-38775796 Msa0950410:CDS
ACATGGAGACAAACTGCCTT+TGG 0.473950 6_3:-38779628 Msa0950410:CDS
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6_3:-38775761 Msa0950410:intron
GTGAAACATACAAGAACAAA+GGG 0.495041 6_3:-38774888 Msa0950410:CDS
AAGCTTAGAACAAGCGAAGA+AGG 0.497019 6_3:-38774435 Msa0950410:CDS
TCTCACAATGTTTCTTGTCA+AGG 0.501785 6_3:-38779739 Msa0950410:intron
TTTACTCGATGCATCCAGGT+TGG 0.504519 6_3:-38774858 Msa0950410:CDS
GAAATAACATACAGAAAAGC+AGG 0.505264 6_3:+38779577 None:intergenic
GTTACAATGCAATTCTTCCC+TGG 0.509486 6_3:+38777447 None:intergenic
ATTGGTTATGCGGCAGCTGA+GGG 0.522993 6_3:-38777408 Msa0950410:CDS
AATTGGTTATGCGGCAGCTG+AGG 0.524068 6_3:-38777409 Msa0950410:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6_3:+38774844 None:intergenic
AATCGAGTTACTACATCAGA+AGG 0.531699 6_3:-38776243 Msa0950410:CDS
CTTGTTTCGAGCATACTGTA+AGG 0.535266 6_3:+38775636 None:intergenic
TGTCAAGGATATCAAGTCAC+TGG 0.541138 6_3:-38776729 Msa0950410:CDS
CAATCAAAATGTGTATTTGG+AGG 0.541205 6_3:-38777205 Msa0950410:intron
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6_3:+38775760 None:intergenic
CTTTCATTTAATGCTACAAG+TGG 0.547346 6_3:-38774321 Msa0950410:CDS
TAATTAATTACAGGCTTGCA+GGG 0.550954 6_3:-38774458 Msa0950410:intron
GAACATAAAATGAAAAGAAG+TGG 0.555947 6_3:-38779810 Msa0950410:exon
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6_3:-38774388 Msa0950410:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6_3:-38777487 Msa0950410:CDS
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6_3:+38775759 None:intergenic
GAAACAGAAACACAAATACC+AGG 0.569965 6_3:-38777465 Msa0950410:CDS
TTGTGATCTGTCATCTGTCA+AGG 0.571689 6_3:-38776744 Msa0950410:CDS
CACTTGTAGCATTAAATGAA+AGG 0.577862 6_3:+38774322 None:intergenic
GTATATGAATAAGTTTCTAT+GGG 0.579445 6_3:-38773938 Msa0950410:three_prime_UTR
ATTGTAACAGGAGCAAACTC+TGG 0.588444 6_3:-38777432 Msa0950410:CDS
ACATACAAGAACAAAGGGAT+AGG 0.589492 6_3:-38774883 Msa0950410:CDS
AAGCGAAGAAGGCGCGGACA+CGG 0.590204 6_3:-38774424 Msa0950410:CDS
TTAAGCCGAAAGAGATGCCA+AGG 0.597074 6_3:+38774257 None:intergenic
CAGTAATGACACGTGCATCA+GGG 0.598705 6_3:+38775809 None:intergenic
CGGTACCATCAATTCAGTCA+TGG 0.602047 6_3:+38775849 None:intergenic
GGGGAAGCTTTCTCCAGTAA+CGG 0.603395 6_3:+38775829 None:intergenic
GGTCCCATTAAAGCTGCTCT+CGG 0.614033 6_3:+38775657 None:intergenic
CTGGTTGGCACTACAACCAA+AGG 0.614640 6_3:-38774397 Msa0950410:CDS
AGTAATGACACGTGCATCAG+GGG 0.621348 6_3:+38775810 None:intergenic
GAATGTTCCAGTGCACGTGT+TGG 0.626224 6_3:-38776687 Msa0950410:intron
GGTGAAACATACAAGAACAA+AGG 0.631717 6_3:-38774889 Msa0950410:CDS
TCGTAATAAGGAGAGAGGAG+AGG 0.632019 6_3:-38777259 Msa0950410:CDS
AAACAGAAACACAAATACCA+GGG 0.633281 6_3:-38777464 Msa0950410:CDS
TAGAACAAGCGAAGAAGGCG+CGG 0.636188 6_3:-38774430 Msa0950410:CDS
CATATAACCATAAACACCAA+AGG 0.637202 6_3:+38779612 None:intergenic
GTATGTCGTAATAAGGAGAG+AGG 0.651473 6_3:-38777264 Msa0950410:CDS
CAGCTGAGGGTCTTGCACAG+CGG 0.656011 6_3:-38777395 Msa0950410:intron
ATCGAGTTACTACATCAGAA+GGG 0.664466 6_3:-38776242 Msa0950410:intron
AAACTCTGGAATTGGTTATG+CGG 0.681764 6_3:-38777418 Msa0950410:CDS
GTTGCACTAACAGAAAATTG+GGG 0.760563 6_3:-38774910 Msa0950410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTGTTATTGTTATT+AGG - chr6_3:38774457-38774476 Msa0950410:intron 10.0%
!! ATGATAATAATTATTGTTAT+TGG - chr6_3:38775131-38775150 Msa0950410:intron 10.0%
!!! AAGATAAAATTTTATACATA+AGG + chr6_3:38776259-38776278 None:intergenic 10.0%
!! GTAAAATAGTTTATTCAAAA+TGG + chr6_3:38774239-38774258 None:intergenic 15.0%
!! TCTTAAAAGATATATAATGA+TGG - chr6_3:38774424-38774443 Msa0950410:CDS 15.0%
!! ATTATGCAATAAATATATAG+AGG - chr6_3:38775424-38775443 Msa0950410:intron 15.0%
!! TTCATATAATTCTTAGAATT+TGG + chr6_3:38775879-38775898 None:intergenic 15.0%
!!! TATCTTTTGTTATAAAAAAG+AGG - chr6_3:38776801-38776820 Msa0950410:intron 15.0%
!!! AATTTAAAATAAGAAACTCA+CGG - chr6_3:38777335-38777354 Msa0950410:intron 15.0%
!!! AATAATCAATAGTTTTTCTA+CGG + chr6_3:38779020-38779039 None:intergenic 15.0%
!!! TTCTATTTTAATCTTTTGAT+TGG + chr6_3:38779624-38779643 None:intergenic 15.0%
!!! ATTTTATGTTCCGTTTTTTA+TGG + chr6_3:38773959-38773978 None:intergenic 20.0%
!! TCCTATTTATAAGAGATATT+TGG - chr6_3:38774273-38774292 Msa0950410:CDS 20.0%
!! CCTATTTATAAGAGATATTT+GGG - chr6_3:38774274-38774293 Msa0950410:CDS 20.0%
!!! ATAAAATTTGTTTTACCAAC+TGG - chr6_3:38774580-38774599 Msa0950410:intron 20.0%
!!! ATTTATATCTAGCTTTTTGT+TGG - chr6_3:38774740-38774759 Msa0950410:intron 20.0%
!!! TTTATATCTAGCTTTTTGTT+GGG - chr6_3:38774741-38774760 Msa0950410:intron 20.0%
!!! CTTTTAGACATTAAGTATAT+GGG + chr6_3:38774836-38774855 None:intergenic 20.0%
!!! ACTTTTAGACATTAAGTATA+TGG + chr6_3:38774837-38774856 None:intergenic 20.0%
!!! ACTTAATGTCTAAAAGTTTT+CGG - chr6_3:38774840-38774859 Msa0950410:CDS 20.0%
!!! GTTTATTTTGTTTGTTTGAT+TGG - chr6_3:38776020-38776039 Msa0950410:intron 20.0%
!!! TCATTTATTTTTGAATGTTG+AGG - chr6_3:38776103-38776122 Msa0950410:intron 20.0%
!! TAAAGTAAGTAAATTCAAAC+AGG + chr6_3:38776622-38776641 None:intergenic 20.0%
!!! TAAAAAGTCTAATATGCTTT+TGG + chr6_3:38776906-38776925 None:intergenic 20.0%
!!! TTTTCACAATTTTGTTGATT+TGG - chr6_3:38776959-38776978 Msa0950410:intron 20.0%
!!! ATTTAAAATAAGAAACTCAC+GGG - chr6_3:38777336-38777355 Msa0950410:intron 20.0%
!! ATTCTCTTGAAAATCTAATA+TGG - chr6_3:38777466-38777485 Msa0950410:CDS 20.0%
!!! TTTTCAAATAGAAACTATAG+AGG + chr6_3:38777704-38777723 None:intergenic 20.0%
!!! GTACTGATATTTTAAATTCA+AGG - chr6_3:38778196-38778215 Msa0950410:intron 20.0%
!!! ATGCAAATTTTGTGATATAT+TGG - chr6_3:38778836-38778855 Msa0950410:intron 20.0%
!! TTGATTATTAAAACCATTCA+TGG - chr6_3:38779031-38779050 Msa0950410:intron 20.0%
!! TGATTATTAAAACCATTCAT+GGG - chr6_3:38779032-38779051 Msa0950410:intron 20.0%
!!! GTTTTTTGGTTTTTTTAATC+CGG - chr6_3:38779656-38779675 Msa0950410:intron 20.0%
!! ATGATTACTTACAACATTTA+AGG + chr6_3:38779717-38779736 None:intergenic 20.0%
!!! ACAGTTATATCAATTGTTTT+CGG - chr6_3:38779777-38779796 Msa0950410:CDS 20.0%
!! TGTATATGAATAAGTTTCTA+TGG - chr6_3:38779839-38779858 Msa0950410:five_prime_UTR 20.0%
! GAACATAAAATGAAAAGAAG+TGG - chr6_3:38773968-38773987 Msa0950410:three_prime_UTR 25.0%
! AATGAAATGTGAAACTGTTA+AGG + chr6_3:38774085-38774104 None:intergenic 25.0%
! ATATCTCTTATAAATAGGAC+CGG + chr6_3:38774272-38774291 None:intergenic 25.0%
! CCCAAATATCTCTTATAAAT+AGG + chr6_3:38774277-38774296 None:intergenic 25.0%
! CCAAATTATAAGAGACATTT+CGG + chr6_3:38774382-38774401 None:intergenic 25.0%
! ATCATAGAATTTCTTAAGTC+AGG - chr6_3:38774486-38774505 Msa0950410:intron 25.0%
! TAGAGCACAAATATCAATTT+AGG - chr6_3:38774535-38774554 Msa0950410:intron 25.0%
!! AGTTTAGTGTTGGATATATA+AGG - chr6_3:38774803-38774822 Msa0950410:intron 25.0%
!! GTTTAGTGTTGGATATATAA+GGG - chr6_3:38774804-38774823 Msa0950410:intron 25.0%
! ACATGTAGTGATTAAATAGT+GGG - chr6_3:38774957-38774976 Msa0950410:intron 25.0%
! CTGCTATATTATATTGTTCA+TGG - chr6_3:38775092-38775111 Msa0950410:intron 25.0%
! CAAAAATAGTTGCTATAAGT+TGG - chr6_3:38775184-38775203 Msa0950410:intron 25.0%
! CATAAATCCAAGTTATAAGA+CGG - chr6_3:38775246-38775265 Msa0950410:intron 25.0%
! TGAGACTTATATAAGTTTGA+AGG - chr6_3:38775623-38775642 Msa0950410:intron 25.0%
! TTATATAAGTTTGAAGGATG+TGG - chr6_3:38775629-38775648 Msa0950410:CDS 25.0%
!!! AGAAAAGCATTAAGAATTTG+AGG + chr6_3:38775918-38775937 None:intergenic 25.0%
! AAAAGAAGAATGTAGAAAAG+TGG - chr6_3:38776217-38776236 Msa0950410:intron 25.0%
! AAAATTCCAGAAACAAACAT+CGG + chr6_3:38776423-38776442 None:intergenic 25.0%
! TGTAATTATATGCTAATCTG+TGG - chr6_3:38776455-38776474 Msa0950410:intron 25.0%
!!! TAATATGCTTTTGGTAGTTA+CGG + chr6_3:38776897-38776916 None:intergenic 25.0%
!!! GTATTCGGTTATTTCATTTT+TGG + chr6_3:38777207-38777226 None:intergenic 25.0%
! CAACTAACTCAATCATTTAT+AGG - chr6_3:38778060-38778079 Msa0950410:intron 25.0%
! ATTGACAACATTAGTCATTA+TGG + chr6_3:38778454-38778473 None:intergenic 25.0%
!! AATCCTTATTTCTTGAATAG+AGG - chr6_3:38778745-38778764 Msa0950410:intron 25.0%
! TAACCTCTATTCAAGAAATA+AGG + chr6_3:38778751-38778770 None:intergenic 25.0%
!! TTATTTCTTGAATAGAGGTT+AGG - chr6_3:38778750-38778769 Msa0950410:intron 25.0%
! GTACATAATCATTAGGATTT+AGG + chr6_3:38779295-38779314 None:intergenic 25.0%
! ACTTATTCATATACAGCTTT+AGG + chr6_3:38779834-38779853 None:intergenic 25.0%
TGTGAGAGATACAATGTTAA+TGG + chr6_3:38774026-38774045 None:intergenic 30.0%
!!! TGTTTGTGTTTTAACAGACA+TGG - chr6_3:38774133-38774152 Msa0950410:intron 30.0%
CATATAACCATAAACACCAA+AGG + chr6_3:38774169-38774188 None:intergenic 30.0%
GAAATAACATACAGAAAAGC+AGG + chr6_3:38774204-38774223 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTATG+TGG + chr6_3:38774337-38774356 None:intergenic 30.0%
CCGAAATGTCTCTTATAATT+TGG - chr6_3:38774379-38774398 Msa0950410:CDS 30.0%
ATGTCTCTTATAATTTGGAC+CGG - chr6_3:38774384-38774403 Msa0950410:CDS 30.0%
!! AATTCGAACATTGATTCATC+AGG + chr6_3:38774641-38774660 None:intergenic 30.0%
AACACTAAACTCATTCATAG+TGG + chr6_3:38774794-38774813 None:intergenic 30.0%
ACTATGAATGAGTTTAGTGT+TGG - chr6_3:38774793-38774812 Msa0950410:intron 30.0%
GACATGTAGTGATTAAATAG+TGG - chr6_3:38774956-38774975 Msa0950410:intron 30.0%
GTTGACTAATGATATGTGAT+AGG - chr6_3:38775160-38775179 Msa0950410:intron 30.0%
!! AACTCTCATTGACTAACTTT+TGG - chr6_3:38775211-38775230 Msa0950410:intron 30.0%
!! ACTCTCATTGACTAACTTTT+GGG - chr6_3:38775212-38775231 Msa0950410:intron 30.0%
GTAGGTATGAAGATGTTTAT+TGG - chr6_3:38775365-38775384 Msa0950410:intron 30.0%
TATAGAGGATCTTACAATGT+TGG - chr6_3:38775439-38775458 Msa0950410:intron 30.0%
TCAAGTCAGTATAATGATTG+AGG - chr6_3:38775555-38775574 Msa0950410:intron 30.0%
ATATCATCATCAATCAAGGT+AGG + chr6_3:38775604-38775623 None:intergenic 30.0%
TCTCATATCATCATCAATCA+AGG + chr6_3:38775608-38775627 None:intergenic 30.0%
TAACTACTTCACCATATTAC+TGG + chr6_3:38775695-38775714 None:intergenic 30.0%
AGTAATATGGTGAAGTAGTT+AGG - chr6_3:38775694-38775713 Msa0950410:intron 30.0%
! CTTTTCTTAACACACAACAT+TGG - chr6_3:38775931-38775950 Msa0950410:intron 30.0%
! AAAGAGAAGGAAATGACTTT+TGG + chr6_3:38775988-38776007 None:intergenic 30.0%
AAAAGTCATTTCCTTCTCTT+TGG - chr6_3:38775987-38776006 Msa0950410:intron 30.0%
AAAGTCATTTCCTTCTCTTT+GGG - chr6_3:38775988-38776007 Msa0950410:intron 30.0%
! TTCTAAGAATTTCAAACCAG+AGG - chr6_3:38776291-38776310 Msa0950410:intron 30.0%
AAACAGAAACACAAATACCA+GGG - chr6_3:38776314-38776333 Msa0950410:intron 30.0%
CTATCTTGTATGTCGTAATA+AGG - chr6_3:38776507-38776526 Msa0950410:intron 30.0%
TGGCAATCAAAATGTGTATT+TGG - chr6_3:38776570-38776589 Msa0950410:intron 30.0%
CAATCAAAATGTGTATTTGG+AGG - chr6_3:38776573-38776592 Msa0950410:intron 30.0%
! GAAACTGTTTTCAGAACATA+TGG - chr6_3:38776668-38776687 Msa0950410:intron 30.0%
! AACATTCTTTTCAGAAAACC+TGG + chr6_3:38777078-38777097 None:intergenic 30.0%
TGGAACAATTTATTGCATCA+AGG - chr6_3:38777486-38777505 Msa0950410:CDS 30.0%
TTGAACAAGTGTTATCGTTT+CGG + chr6_3:38777805-38777824 None:intergenic 30.0%
AAGTTTACCTATTCTTGTTC+AGG - chr6_3:38777866-38777885 Msa0950410:intron 30.0%
! AACTTTGCTGTCAATGTATT+AGG - chr6_3:38777898-38777917 Msa0950410:intron 30.0%
ACAAAAAAATCGCATTGTAG+TGG - chr6_3:38778401-38778420 Msa0950410:intron 30.0%
GTGAAACATACAAGAACAAA+GGG - chr6_3:38778890-38778909 Msa0950410:intron 30.0%
! TTTTTCTACGGATGATGTTA+AGG + chr6_3:38779008-38779027 None:intergenic 30.0%
CAAGGATTATAGACTCATAA+TGG + chr6_3:38779147-38779166 None:intergenic 30.0%
TATAATCCTTGATTTCGTAG+CGG - chr6_3:38779156-38779175 Msa0950410:intron 30.0%
AAGAATCTGACTTCAATTCT+TGG + chr6_3:38779233-38779252 None:intergenic 30.0%
TAGGTCAGTACATAATCATT+AGG + chr6_3:38779302-38779321 None:intergenic 30.0%
! GTACTGACCTAATTAATTAC+AGG - chr6_3:38779311-38779330 Msa0950410:intron 30.0%
TAATTAATTACAGGCTTGCA+GGG - chr6_3:38779320-38779339 Msa0950410:intron 30.0%
!! GCATTAAATGAAAGGTGTTT+GGG + chr6_3:38779451-38779470 None:intergenic 30.0%
!! AGCATTAAATGAAAGGTGTT+TGG + chr6_3:38779452-38779471 None:intergenic 30.0%
CACTTGTAGCATTAAATGAA+AGG + chr6_3:38779459-38779478 None:intergenic 30.0%
CTTTCATTTAATGCTACAAG+TGG - chr6_3:38779457-38779476 Msa0950410:intron 30.0%
!!! CAGTTAGGTTTTTTGTAGTT+CGG - chr6_3:38779569-38779588 Msa0950410:intron 30.0%
!!! AACAGATTTCGTGTGTTTTT+TGG - chr6_3:38779642-38779661 Msa0950410:intron 30.0%
AATGCTATATTACCTGAAAC+AGG + chr6_3:38779744-38779763 None:intergenic 30.0%
! GATATAACTGTCGCTAATTT+TGG + chr6_3:38779768-38779787 None:intergenic 30.0%
TTAGGAAAATGTACACTTCA+TGG + chr6_3:38779816-38779835 None:intergenic 30.0%
CACACGTCAACCATAAAAAA+CGG - chr6_3:38773946-38773965 Msa0950410:three_prime_UTR 35.0%
TCTCACAATGTTTCTTGTCA+AGG - chr6_3:38774039-38774058 Msa0950410:three_prime_UTR 35.0%
AACATACAGAAAAGCAGGTT+TGG + chr6_3:38774199-38774218 None:intergenic 35.0%
! CTATTTTACTATCTCCTCTC+CGG - chr6_3:38774250-38774269 Msa0950410:exon 35.0%
! TGAACCAGATACATCCATTT+TGG + chr6_3:38774304-38774323 None:intergenic 35.0%
GTCAATAAAAGAGACATGTC+AGG + chr6_3:38774360-38774379 None:intergenic 35.0%
GAACTAATAAACACTCTCTC+CGG + chr6_3:38774406-38774425 None:intergenic 35.0%
!!! TTTGTTTTACCAACTGGAGT+TGG - chr6_3:38774586-38774605 Msa0950410:intron 35.0%
!! TTGTTTTACCAACTGGAGTT+GGG - chr6_3:38774587-38774606 Msa0950410:intron 35.0%
!! AACATTGATTCATCAGGTTG+TGG + chr6_3:38774635-38774654 None:intergenic 35.0%
TTTAATGTCAGGCCTAGAAT+AGG - chr6_3:38774683-38774702 Msa0950410:intron 35.0%
AGGTTCACTAATCCTATTCT+AGG + chr6_3:38774698-38774717 None:intergenic 35.0%
! GAATAGGATTAGTGAACCTA+TGG - chr6_3:38774699-38774718 Msa0950410:intron 35.0%
ATTAGTGAACCTATGGCTAT+GGG - chr6_3:38774706-38774725 Msa0950410:intron 35.0%
!! AACTCATTCATAGTGGATGT+GGG + chr6_3:38774787-38774806 None:intergenic 35.0%
!! AAACTCATTCATAGTGGATG+TGG + chr6_3:38774788-38774807 None:intergenic 35.0%
! TAGTGTTGGATATATAAGGG+TGG - chr6_3:38774807-38774826 Msa0950410:intron 35.0%
ATCACTACATGTCTGAAAGT+GGG + chr6_3:38774949-38774968 None:intergenic 35.0%
AATCACTACATGTCTGAAAG+TGG + chr6_3:38774950-38774969 None:intergenic 35.0%
!! CTCTCATTGACTAACTTTTG+GGG - chr6_3:38775213-38775232 Msa0950410:intron 35.0%
TCTGATACCGTCTTATAACT+TGG + chr6_3:38775256-38775275 None:intergenic 35.0%
! AACATCTGGAACATGAAGTT+TGG + chr6_3:38775340-38775359 None:intergenic 35.0%
TGTTCCAGATGTTCAATAGT+AGG - chr6_3:38775347-38775366 Msa0950410:intron 35.0%
CATACCTACTATTGAACATC+TGG + chr6_3:38775354-38775373 None:intergenic 35.0%
! CTTACAATGTTGGTAGATTG+AGG - chr6_3:38775449-38775468 Msa0950410:intron 35.0%
TTGGTAGATTGAGGAAAGAA+AGG - chr6_3:38775458-38775477 Msa0950410:intron 35.0%
AGTCAGTATAATGATTGAGG+TGG - chr6_3:38775558-38775577 Msa0950410:intron 35.0%
AAGTTTGAAGGATGTGGTAT+TGG - chr6_3:38775635-38775654 Msa0950410:CDS 35.0%
AGTTTGAAGGATGTGGTATT+GGG - chr6_3:38775636-38775655 Msa0950410:CDS 35.0%
AATATGGTGAAGTAGTTAGG+TGG - chr6_3:38775697-38775716 Msa0950410:intron 35.0%
ATTTCCAACCCCAAAATATG+TGG - chr6_3:38775728-38775747 Msa0950410:intron 35.0%
TTTCCAACCCCAAAATATGT+GGG - chr6_3:38775729-38775748 Msa0950410:intron 35.0%
! AATCGGATTCTAAGAATGCA+TGG - chr6_3:38775807-38775826 Msa0950410:CDS 35.0%
CTGTATCAACATTTACTGTG+TGG - chr6_3:38776049-38776068 Msa0950410:intron 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG + chr6_3:38776310-38776329 None:intergenic 35.0%
GAAACAGAAACACAAATACC+AGG - chr6_3:38776313-38776332 Msa0950410:intron 35.0%
!! AAACTCTGGAATTGGTTATG+CGG - chr6_3:38776360-38776379 Msa0950410:intron 35.0%
AGAAACAAACATCGGAAGAA+AGG + chr6_3:38776415-38776434 None:intergenic 35.0%
TTTCTTCCGATGTTTGTTTC+TGG - chr6_3:38776414-38776433 Msa0950410:intron 35.0%
TCCCAAATTCAGACTAAAAC+TGG - chr6_3:38776550-38776569 Msa0950410:intron 35.0%
!! GCCAGTTTTAGTCTGAATTT+GGG + chr6_3:38776554-38776573 None:intergenic 35.0%
!! TGCCAGTTTTAGTCTGAATT+TGG + chr6_3:38776555-38776574 None:intergenic 35.0%
! TATTGCCGCCAATTCTTTTA+GGG - chr6_3:38776596-38776615 Msa0950410:intron 35.0%
ACATTATCCTAGAGAGCTTA+TGG + chr6_3:38776739-38776758 None:intergenic 35.0%
! CTTCAGATTAAAAGCACGTT+CGG + chr6_3:38777271-38777290 None:intergenic 35.0%
!! GTGCTTTTAATCTGAAGTGT+CGG - chr6_3:38777274-38777293 Msa0950410:CDS 35.0%
! GGACTTTTGTATCTTGCTTT+TGG - chr6_3:38777357-38777376 Msa0950410:intron 35.0%
AATCGAGTTACTACATCAGA+AGG - chr6_3:38777535-38777554 Msa0950410:intron 35.0%
ATCGAGTTACTACATCAGAA+GGG - chr6_3:38777536-38777555 Msa0950410:intron 35.0%
ACTCAAACCTGAACAAGAAT+AGG + chr6_3:38777876-38777895 None:intergenic 35.0%
CATCAATAGCTATGAAACAC+TGG + chr6_3:38778333-38778352 None:intergenic 35.0%
TTGTATCACTATTCAGTCAC+AGG + chr6_3:38778514-38778533 None:intergenic 35.0%
TTGAATAGAGGTTAGGACTT+AGG - chr6_3:38778757-38778776 Msa0950410:intron 35.0%
TGTGATATATTGGAAATGCC+AGG - chr6_3:38778846-38778865 Msa0950410:intron 35.0%
! AATTTTCTGTTAGTGCAACC+TGG + chr6_3:38778867-38778886 None:intergenic 35.0%
AGGTTGCACTAACAGAAAAT+TGG - chr6_3:38778866-38778885 Msa0950410:intron 35.0%
GGTTGCACTAACAGAAAATT+GGG - chr6_3:38778867-38778886 Msa0950410:intron 35.0%
GTTGCACTAACAGAAAATTG+GGG - chr6_3:38778868-38778887 Msa0950410:intron 35.0%
GGTGAAACATACAAGAACAA+AGG - chr6_3:38778889-38778908 Msa0950410:intron 35.0%
ACATACAAGAACAAAGGGAT+AGG - chr6_3:38778895-38778914 Msa0950410:intron 35.0%
!! AGACTCATAATGGACTCAAA+GGG + chr6_3:38779137-38779156 None:intergenic 35.0%
!! TAGACTCATAATGGACTCAA+AGG + chr6_3:38779138-38779157 None:intergenic 35.0%
ATAATCCTTGATTTCGTAGC+GGG - chr6_3:38779157-38779176 Msa0950410:intron 35.0%
!! GCATGTGACTTTTATTTCGT+GGG - chr6_3:38779180-38779199 Msa0950410:intron 35.0%
!! CATGTGACTTTTATTTCGTG+GGG - chr6_3:38779181-38779200 Msa0950410:intron 35.0%
ATTCTTGGAGTCGTGTATTT+GGG + chr6_3:38779218-38779237 None:intergenic 35.0%
AATTCTTGGAGTCGTGTATT+TGG + chr6_3:38779219-38779238 None:intergenic 35.0%
! TTGAAGTCAGATTCTTTTCG+TGG - chr6_3:38779237-38779256 Msa0950410:intron 35.0%
! TGAAGTCAGATTCTTTTCGT+GGG - chr6_3:38779238-38779257 Msa0950410:intron 35.0%
CTGCAAGCCTGTAATTAATT+AGG + chr6_3:38779321-38779340 None:intergenic 35.0%
CTAATTAATTACAGGCTTGC+AGG - chr6_3:38779319-38779338 Msa0950410:intron 35.0%
CATCTCTTTCGGCTTAAATA+GGG - chr6_3:38779527-38779546 Msa0950410:intron 35.0%
!!! GGTTTGAATCAGTTTTGAGA+TGG - chr6_3:38779590-38779609 Msa0950410:CDS 35.0%
GTAATCATAGAACCTGTTTC+AGG - chr6_3:38779729-38779748 Msa0950410:intron 35.0%
!! CAAACTGCCTTTGGTGTTTA+TGG - chr6_3:38774159-38774178 Msa0950410:three_prime_UTR 40.0%
TCTTATAAATAGGACCGGAG+AGG + chr6_3:38774267-38774286 None:intergenic 40.0%
GATATTTGGGTCGACCAAAA+TGG - chr6_3:38774287-38774306 Msa0950410:CDS 40.0%
TCGACCAAAATGGATGTATC+TGG - chr6_3:38774297-38774316 Msa0950410:CDS 40.0%
! ATTGATTCATCAGGTTGTGG+AGG + chr6_3:38774632-38774651 None:intergenic 40.0%
TCAATGTTCGAATTTCGACC+AGG - chr6_3:38774647-38774666 Msa0950410:intron 40.0%
AGGTGACCACATTTAATGTC+AGG - chr6_3:38774672-38774691 Msa0950410:intron 40.0%
TCTAGGCCTGACATTAAATG+TGG + chr6_3:38774681-38774700 None:intergenic 40.0%
GATTAGTGAACCTATGGCTA+TGG - chr6_3:38774705-38774724 Msa0950410:intron 40.0%
! GTTTTTGTTCCCATAGCCAT+AGG + chr6_3:38774718-38774737 None:intergenic 40.0%
TTGTTGGGTTTAAGTGTGAC+CGG - chr6_3:38774756-38774775 Msa0950410:intron 40.0%
TCTATGGGTGGACAATTAAC+AGG + chr6_3:38775306-38775325 None:intergenic 40.0%
ATTGTCCACCCATAGATGTT+CGG - chr6_3:38775310-38775329 Msa0950410:intron 40.0%
! ATCTGGAACATGAAGTTTGG+AGG + chr6_3:38775337-38775356 None:intergenic 40.0%
ATTGGACATCATCGATGTCA+TGG + chr6_3:38775504-38775523 None:intergenic 40.0%
ATGACATCGATGATGTCCAA+TGG - chr6_3:38775503-38775522 Msa0950410:intron 40.0%
!! CATTATACTGACTTGAGCGT+TGG + chr6_3:38775551-38775570 None:intergenic 40.0%
TAATGATTGAGGTGGATGAG+AGG - chr6_3:38775566-38775585 Msa0950410:intron 40.0%
! AAGGATGTGGTATTGGGATT+CGG - chr6_3:38775642-38775661 Msa0950410:CDS 40.0%
! TATTACTGGTTGTTCCGAAG+TGG + chr6_3:38775681-38775700 None:intergenic 40.0%
CTTCGGAACAACCAGTAATA+TGG - chr6_3:38775681-38775700 Msa0950410:intron 40.0%
! AAGTCCGACCCACATATTTT+GGG + chr6_3:38775740-38775759 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG + chr6_3:38775763-38775782 None:intergenic 40.0%
GACACATAGGACTGAATATC+TGG + chr6_3:38775777-38775796 None:intergenic 40.0%
TATTCAGTCCTATGTGTCTG+AGG - chr6_3:38775779-38775798 Msa0950410:CDS 40.0%
GTTACAATGCAATTCTTCCC+TGG + chr6_3:38776334-38776353 None:intergenic 40.0%
GGGAAGAATTGCATTGTAAC+AGG - chr6_3:38776334-38776353 Msa0950410:intron 40.0%
ATTGTAACAGGAGCAAACTC+TGG - chr6_3:38776346-38776365 Msa0950410:intron 40.0%
AAGATAGACATTTGCACCAC+TGG + chr6_3:38776494-38776513 None:intergenic 40.0%
GTATGTCGTAATAAGGAGAG+AGG - chr6_3:38776514-38776533 Msa0950410:intron 40.0%
! GTATTGCCGCCAATTCTTTT+AGG - chr6_3:38776595-38776614 Msa0950410:intron 40.0%
CAAACAGGCCCTAAAAGAAT+TGG + chr6_3:38776607-38776626 None:intergenic 40.0%
CCTAGAGAGCTTATGGAAAT+CGG + chr6_3:38776732-38776751 None:intergenic 40.0%
!! TTGGTAGTTACGGTCTTGTT+TGG + chr6_3:38776887-38776906 None:intergenic 40.0%
TTGTGATCTGTCATCTGTCA+AGG - chr6_3:38777034-38777053 Msa0950410:intron 40.0%
TGTCAAGGATATCAAGTCAC+TGG - chr6_3:38777049-38777068 Msa0950410:intron 40.0%
TAATTTACCAACACGTGCAC+TGG + chr6_3:38777101-38777120 None:intergenic 40.0%
ATGAAACACTAACACAGACG+CGG - chr6_3:38777149-38777168 Msa0950410:intron 40.0%
TGCATCAAGGTTAACAATGC+TGG - chr6_3:38777499-38777518 Msa0950410:intron 40.0%
TTCCTCTATTCTACCTGTAG+TGG - chr6_3:38777592-38777611 Msa0950410:intron 40.0%
TTGTTTCGCGAAACACGATT+TGG + chr6_3:38777736-38777755 None:intergenic 40.0%
GATTTAGGCTAAAGCATAGC+GGG + chr6_3:38777775-38777794 None:intergenic 40.0%
CGATTTAGGCTAAAGCATAG+CGG + chr6_3:38777776-38777795 None:intergenic 40.0%
!! AGAGCAGTTTTGTCTGATAG+TGG + chr6_3:38777845-38777864 None:intergenic 40.0%
TTACGCCATGACTGAATTGA+TGG - chr6_3:38777924-38777943 Msa0950410:intron 40.0%
! TGAATTGATGGTACCGTTAC+TGG - chr6_3:38777936-38777955 Msa0950410:intron 40.0%
! CGTGTCATTACTGTTTCTTC+TGG - chr6_3:38777979-38777998 Msa0950410:intron 40.0%
! GTCATTACTGTTTCTTCTGG+TGG - chr6_3:38777982-38778001 Msa0950410:intron 40.0%
ACCTGTAGATCTTTGGTCAA+GGG + chr6_3:38778021-38778040 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG + chr6_3:38778022-38778041 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG + chr6_3:38778028-38778047 None:intergenic 40.0%
! TATTCCGAGAGCAGCTTTAA+TGG - chr6_3:38778117-38778136 Msa0950410:intron 40.0%
! ATTCCGAGAGCAGCTTTAAT+GGG - chr6_3:38778118-38778137 Msa0950410:intron 40.0%
CTTGTTTCGAGCATACTGTA+AGG + chr6_3:38778145-38778164 None:intergenic 40.0%
ATAGCTATGAAACACTGGCA+CGG + chr6_3:38778328-38778347 None:intergenic 40.0%
! TCAATTAGTCTCCTAAGGCT+TGG + chr6_3:38778607-38778626 None:intergenic 40.0%
AAGCCTTAGGAGACTAATTG+AGG - chr6_3:38778606-38778625 Msa0950410:intron 40.0%
! CAACCTCAATTAGTCTCCTA+AGG + chr6_3:38778612-38778631 None:intergenic 40.0%
TTCCTACATTTGTAACTCGG+GGG + chr6_3:38778675-38778694 None:intergenic 40.0%
CTTCCTACATTTGTAACTCG+GGG + chr6_3:38778676-38778695 None:intergenic 40.0%
CCTTCCTACATTTGTAACTC+GGG + chr6_3:38778677-38778696 None:intergenic 40.0%
CCCTTCCTACATTTGTAACT+CGG + chr6_3:38778678-38778697 None:intergenic 40.0%
CCGAGTTACAAATGTAGGAA+GGG - chr6_3:38778675-38778694 Msa0950410:intron 40.0%
CGAGTTACAAATGTAGGAAG+GGG - chr6_3:38778676-38778695 Msa0950410:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG + chr6_3:38778976-38778995 None:intergenic 40.0%
CTATGTCGTGGGATACTTTA+GGG + chr6_3:38779113-38779132 None:intergenic 40.0%
TCTATGTCGTGGGATACTTT+AGG + chr6_3:38779114-38779133 None:intergenic 40.0%
TAATCCTTGATTTCGTAGCG+GGG - chr6_3:38779158-38779177 Msa0950410:intron 40.0%
!! GGCATGTGACTTTTATTTCG+TGG - chr6_3:38779179-38779198 Msa0950410:intron 40.0%
!! TGACTTTTATTTCGTGGGGA+TGG - chr6_3:38779185-38779204 Msa0950410:intron 40.0%
! GAAGTCAGATTCTTTTCGTG+GGG - chr6_3:38779239-38779258 Msa0950410:intron 40.0%
AAGCTTAGAACAAGCGAAGA+AGG - chr6_3:38779343-38779362 Msa0950410:intron 40.0%
ACTACAACCAAAGGAGAAGT+TGG - chr6_3:38779390-38779409 Msa0950410:intron 40.0%
! CATTGATAGTCTTCGATCCT+TGG - chr6_3:38779504-38779523 Msa0950410:intron 40.0%
GCATCTCTTTCGGCTTAAAT+AGG - chr6_3:38779526-38779545 Msa0950410:intron 40.0%
TACTTCTGCGCTAAACAGTT+AGG - chr6_3:38779554-38779573 Msa0950410:intron 40.0%
TCTAAACACGAACTGCAAAC+CGG + chr6_3:38779678-38779697 None:intergenic 40.0%
ACATGGAGACAAACTGCCTT+TGG - chr6_3:38774150-38774169 Msa0950410:intron 45.0%
TGGAGTTGGGTTCAGTTGAA+GGG - chr6_3:38774600-38774619 Msa0950410:intron 45.0%
TTAAATGTGGTCACCTCTCC+TGG + chr6_3:38774668-38774687 None:intergenic 45.0%
!! ATAGTGGATGTGGGACTAAC+CGG + chr6_3:38774778-38774797 None:intergenic 45.0%
TGCTCCATAACCACAAGAGA+GGG + chr6_3:38774882-38774901 None:intergenic 45.0%
ATGCTCCATAACCACAAGAG+AGG + chr6_3:38774883-38774902 None:intergenic 45.0%
GTCTGAAAGTGGGAATGTTG+TGG + chr6_3:38774939-38774958 None:intergenic 45.0%
TTGGAGGACCGAACATCTAT+GGG + chr6_3:38775321-38775340 None:intergenic 45.0%
TTTGGAGGACCGAACATCTA+TGG + chr6_3:38775322-38775341 None:intergenic 45.0%
GGAAAGAAAGGTTCTGTGTG+TGG - chr6_3:38775470-38775489 Msa0950410:intron 45.0%
ACATCGATGATGTCCAATGG+TGG - chr6_3:38775506-38775525 Msa0950410:intron 45.0%
CATCGATGATGTCCAATGGT+GGG - chr6_3:38775507-38775526 Msa0950410:intron 45.0%
ATCGATGATGTCCAATGGTG+GGG - chr6_3:38775508-38775527 Msa0950410:intron 45.0%
GCAAGCACAAAAGTCCACTT+CGG - chr6_3:38775664-38775683 Msa0950410:CDS 45.0%
CAACCCCAAAATATGTGGGT+CGG - chr6_3:38775733-38775752 Msa0950410:intron 45.0%
! AGTCCGACCCACATATTTTG+GGG + chr6_3:38775739-38775758 None:intergenic 45.0%
! GAAGTCCGACCCACATATTT+TGG + chr6_3:38775741-38775760 None:intergenic 45.0%
! GACTGAATATCTGGAGCATG+AGG + chr6_3:38775768-38775787 None:intergenic 45.0%
ATTCACCACCTCAGACACAT+AGG + chr6_3:38775790-38775809 None:intergenic 45.0%
! ATGTGTCTGAGGTGGTGAAT+CGG - chr6_3:38775790-38775809 Msa0950410:CDS 45.0%
CCAAAAGCTAGATTGTGGGA+GGG + chr6_3:38775837-38775856 None:intergenic 45.0%
!!! CCTCCCACAATCTAGCTTTT+GGG - chr6_3:38775835-38775854 Msa0950410:CDS 45.0%
!!! CTCCCACAATCTAGCTTTTG+GGG - chr6_3:38775836-38775855 Msa0950410:CDS 45.0%
GACCCCAAAAGCTAGATTGT+GGG + chr6_3:38775841-38775860 None:intergenic 45.0%
AGGAGCTTACGAGATCGAAT+TGG - chr6_3:38776123-38776142 Msa0950410:intron 45.0%
CAGTTATCGCCATGAAACCA+GGG + chr6_3:38776162-38776181 None:intergenic 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG - chr6_3:38776352-38776371 Msa0950410:intron 45.0%
! TGGTTAGTGATTTTCGCCAG+TGG - chr6_3:38776475-38776494 Msa0950410:intron 45.0%
TCGTAATAAGGAGAGAGGAG+AGG - chr6_3:38776519-38776538 Msa0950410:intron 45.0%
ACAGGCCCTAAAAGAATTGG+CGG + chr6_3:38776604-38776623 None:intergenic 45.0%
CCGATTTCCATAAGCTCTCT+AGG - chr6_3:38776729-38776748 Msa0950410:CDS 45.0%
!! ATATCAAGTCACTGGCTTCC+AGG - chr6_3:38777057-38777076 Msa0950410:intron 45.0%
!!! TTTTGGTGTCGACGTGTAAG+TGG + chr6_3:38777190-38777209 None:intergenic 45.0%
CCAACACGTGTGGTTGTATT+CGG + chr6_3:38777222-38777241 None:intergenic 45.0%
GACCACTACAGGTAGAATAG+AGG + chr6_3:38777597-38777616 None:intergenic 45.0%
AGCAGATCAATGACCACTAC+AGG + chr6_3:38777608-38777627 None:intergenic 45.0%
! CGTTTCGGAAAGCACGATTT+AGG + chr6_3:38777790-38777809 None:intergenic 45.0%
! GATAGTGGCTAAAGCATAGC+AGG + chr6_3:38777830-38777849 None:intergenic 45.0%
CGGTACCATCAATTCAGTCA+TGG + chr6_3:38777932-38777951 None:intergenic 45.0%
AGTAATGACACGTGCATCAG+GGG + chr6_3:38777971-38777990 None:intergenic 45.0%
CAGTAATGACACGTGCATCA+GGG + chr6_3:38777972-38777991 None:intergenic 45.0%
ACAGTAATGACACGTGCATC+AGG + chr6_3:38777973-38777992 None:intergenic 45.0%
TCCCTTGACCAAAGATCTAC+AGG - chr6_3:38778017-38778036 Msa0950410:intron 45.0%
TAAAGCTGCTCTCGGAATAC+TGG + chr6_3:38778116-38778135 None:intergenic 45.0%
! AGTGTTGGATACTCGGATAC+TGG + chr6_3:38778227-38778246 None:intergenic 45.0%
! CTGTGTCAGTGTTGGATACT+CGG + chr6_3:38778234-38778253 None:intergenic 45.0%
GTATCCAACACTGACACAGA+TGG - chr6_3:38778235-38778254 Msa0950410:intron 45.0%
GTAACCATCTGTGTCAGTGT+TGG + chr6_3:38778242-38778261 None:intergenic 45.0%
GTTAAACCAAGCCAAGCCTT+AGG - chr6_3:38778593-38778612 Msa0950410:intron 45.0%
TTCCCCCGAGTTACAAATGT+AGG - chr6_3:38778670-38778689 Msa0950410:intron 45.0%
CCCGAGTTACAAATGTAGGA+AGG - chr6_3:38778674-38778693 Msa0950410:intron 45.0%
GGAAGGGGTTTAAATTGTGC+AGG - chr6_3:38778691-38778710 Msa0950410:intron 45.0%
! GGCAAACTTTTTGCAACACC+AGG + chr6_3:38778955-38778974 None:intergenic 45.0%
! GGTGTTGCAAAAAGTTTGCC+AGG - chr6_3:38778955-38778974 Msa0950410:intron 45.0%
AGACGCTTTCTTCCCATGAA+TGG + chr6_3:38779047-38779066 None:intergenic 45.0%
ACTCAAAGGGTCTATGTCGT+GGG + chr6_3:38779124-38779143 None:intergenic 45.0%
! TCAGATTCTTTTCGTGGGGA+TGG - chr6_3:38779243-38779262 Msa0950410:intron 45.0%
CCAGATACCAACTTCTCCTT+TGG + chr6_3:38779400-38779419 None:intergenic 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG - chr6_3:38779397-38779416 Msa0950410:intron 45.0%
TCGATCCTTGGCATCTCTTT+CGG - chr6_3:38779516-38779535 Msa0950410:intron 45.0%
TTAAGCCGAAAGAGATGCCA+AGG + chr6_3:38779524-38779543 None:intergenic 45.0%
!! ATAATTAAATATTCAATTTA+AGG - chr6_3:38775009-38775028 Msa0950410:intron 5.0%
!! TAATTAAATATTCAATTTAA+GGG - chr6_3:38775010-38775029 Msa0950410:intron 5.0%
CAACTGAACCCAACTCCAGT+TGG + chr6_3:38774598-38774617 None:intergenic 50.0%
CTGGAGTTGGGTTCAGTTGA+AGG - chr6_3:38774599-38774618 Msa0950410:intron 50.0%
GGAGTTGGGTTCAGTTGAAG+GGG - chr6_3:38774601-38774620 Msa0950410:intron 50.0%
GTTCGAATTTCGACCAGGAG+AGG - chr6_3:38774652-38774671 Msa0950410:intron 50.0%
GTCTCCCTCTCTTGTGGTTA+TGG - chr6_3:38774875-38774894 Msa0950410:CDS 50.0%
! GCATTGACCTGTGTTGCTCT+CGG - chr6_3:38774899-38774918 Msa0950410:CDS 50.0%
! CATTGACCTGTGTTGCTCTC+GGG - chr6_3:38774900-38774919 Msa0950410:CDS 50.0%
! ATTGACCTGTGTTGCTCTCG+GGG - chr6_3:38774901-38774920 Msa0950410:CDS 50.0%
TCGATGATGTCCAATGGTGG+GGG - chr6_3:38775509-38775528 Msa0950410:intron 50.0%
!!! CGACCCACATATTTTGGGGT+TGG + chr6_3:38775735-38775754 None:intergenic 50.0%
TCAGTCCTATGTGTCTGAGG+TGG - chr6_3:38775782-38775801 Msa0950410:CDS 50.0%
!!! CCCTCCCACAATCTAGCTTT+TGG - chr6_3:38775834-38775853 Msa0950410:CDS 50.0%
CCCAAAAGCTAGATTGTGGG+AGG + chr6_3:38775838-38775857 None:intergenic 50.0%
CGACCCCAAAAGCTAGATTG+TGG + chr6_3:38775842-38775861 None:intergenic 50.0%
CGTGCTTTCACCCAAAGAGA+AGG + chr6_3:38776001-38776020 None:intergenic 50.0%
TGTGACTGACCCTGGTTTCA+TGG - chr6_3:38776150-38776169 Msa0950410:intron 50.0%
GCAGTTATCGCCATGAAACC+AGG + chr6_3:38776163-38776182 None:intergenic 50.0%
AATTGGTTATGCGGCAGCTG+AGG - chr6_3:38776369-38776388 Msa0950410:intron 50.0%
ATTGGTTATGCGGCAGCTGA+GGG - chr6_3:38776370-38776389 Msa0950410:intron 50.0%
GAATGTTCCAGTGCACGTGT+TGG - chr6_3:38777091-38777110 Msa0950410:intron 50.0%
CCGAATACAACCACACGTGT+TGG - chr6_3:38777219-38777238 Msa0950410:CDS 50.0%
! ACAACCACACGTGTTGGTCT+TGG - chr6_3:38777225-38777244 Msa0950410:CDS 50.0%
GGGGAAGCTTTCTCCAGTAA+CGG + chr6_3:38777952-38777971 None:intergenic 50.0%
GGTCCCATTAAAGCTGCTCT+CGG + chr6_3:38778124-38778143 None:intergenic 50.0%
TGCTCGAAACAAGCGTGTTC+AGG - chr6_3:38778152-38778171 Msa0950410:intron 50.0%
TAGTCTCCTAAGGCTTGGCT+TGG + chr6_3:38778602-38778621 None:intergenic 50.0%
GACTCAAAGGGTCTATGTCG+TGG + chr6_3:38779125-38779144 None:intergenic 50.0%
CTTGGAGTCGTGTATTTGGG+AGG + chr6_3:38779215-38779234 None:intergenic 50.0%
! TTAGGATTTAGGACCACCCC+TGG + chr6_3:38779284-38779303 None:intergenic 50.0%
TAGAACAAGCGAAGAAGGCG+CGG - chr6_3:38779348-38779367 Msa0950410:intron 50.0%
CTGGTTGGCACTACAACCAA+AGG - chr6_3:38779381-38779400 Msa0950410:intron 50.0%
TGTTGCGTCTCCCTCTCTTG+TGG - chr6_3:38774869-38774888 Msa0950410:CDS 55.0%
GGGAATGTTGTGGAGACCGA+GGG + chr6_3:38774929-38774948 None:intergenic 55.0%
TGGGAATGTTGTGGAGACCG+AGG + chr6_3:38774930-38774949 None:intergenic 55.0%
GAGGACCGAACATCTATGGG+TGG + chr6_3:38775318-38775337 None:intergenic 55.0%
! TGGAAGTACACCCCCACCAT+TGG + chr6_3:38775522-38775541 None:intergenic 55.0%
!! GACTTGAGCGTTGGAGTGCA+TGG + chr6_3:38775542-38775561 None:intergenic 55.0%
TTGGTGTGTGTGACTGACCC+TGG - chr6_3:38776142-38776161 Msa0950410:intron 55.0%
GTGTCCAAGACCAACACGTG+TGG + chr6_3:38777232-38777251 None:intergenic 55.0%
GTAACTCGGGGGAATCTTCG+AGG + chr6_3:38778664-38778683 None:intergenic 55.0%
CATGCCCCGCTACGAAATCA+AGG + chr6_3:38779165-38779184 None:intergenic 55.0%
TGGTCTACCTCCCACTTACC+AGG - chr6_3:38779263-38779282 Msa0950410:intron 55.0%
GGTCTACCTCCCACTTACCA+GGG - chr6_3:38779264-38779283 Msa0950410:intron 55.0%
GTCTACCTCCCACTTACCAG+GGG - chr6_3:38779265-38779284 Msa0950410:intron 55.0%
TAGGACCACCCCTGGTAAGT+GGG + chr6_3:38779276-38779295 None:intergenic 55.0%
TTAGGACCACCCCTGGTAAG+TGG + chr6_3:38779277-38779296 None:intergenic 55.0%
TGTTGCTCTCGGGGTTCCCT+CGG - chr6_3:38774910-38774929 Msa0950410:CDS 60.0%
CAGCTGAGGGTCTTGCACAG+CGG - chr6_3:38776383-38776402 Msa0950410:intron 60.0%
TACCTCCCACTTACCAGGGG+TGG - chr6_3:38779268-38779287 Msa0950410:intron 60.0%
! AAGCGAAGAAGGCGCGGACA+CGG - chr6_3:38779354-38779373 Msa0950410:intron 60.0%
AAGGCGCGGACACGGTTATC+TGG - chr6_3:38779362-38779381 Msa0950410:intron 60.0%
CGCGGACACGGTTATCTGGT+TGG - chr6_3:38779366-38779385 Msa0950410:intron 60.0%
GGGAACCCCGAGAGCAACAC+AGG + chr6_3:38774909-38774928 None:intergenic 65.0%
GACCACCCCTGGTAAGTGGG+AGG + chr6_3:38779273-38779292 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 38773938 38779862 38773938 ID=Msa0950410;Name=Msa0950410
chr6_3 mRNA 38773938 38779862 38773938 ID=Msa0950410-mRNA-1;Parent=Msa0950410;Name=Msa0950410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=39|1|0.90|1|0.9|0.81|11|288|345
chr6_3 exon 38773938 38774121 38773938 ID=Msa0950410-mRNA-1:exon:9424;Parent=Msa0950410-mRNA-1
chr6_3 exon 38774153 38774467 38774153 ID=Msa0950410-mRNA-1:exon:9423;Parent=Msa0950410-mRNA-1
chr6_3 exon 38774811 38774932 38774811 ID=Msa0950410-mRNA-1:exon:9422;Parent=Msa0950410-mRNA-1
chr6_3 exon 38775627 38775683 38775627 ID=Msa0950410-mRNA-1:exon:9421;Parent=Msa0950410-mRNA-1
chr6_3 exon 38775762 38775912 38775762 ID=Msa0950410-mRNA-1:exon:9420;Parent=Msa0950410-mRNA-1
chr6_3 exon 38776243 38776292 38776243 ID=Msa0950410-mRNA-1:exon:9419;Parent=Msa0950410-mRNA-1
chr6_3 exon 38776688 38776768 38776688 ID=Msa0950410-mRNA-1:exon:9418;Parent=Msa0950410-mRNA-1
chr6_3 exon 38777206 38777305 38777206 ID=Msa0950410-mRNA-1:exon:9417;Parent=Msa0950410-mRNA-1
chr6_3 exon 38777396 38777515 38777396 ID=Msa0950410-mRNA-1:exon:9416;Parent=Msa0950410-mRNA-1
chr6_3 exon 38779589 38779650 38779589 ID=Msa0950410-mRNA-1:exon:9415;Parent=Msa0950410-mRNA-1
chr6_3 exon 38779740 38779862 38779740 ID=Msa0950410-mRNA-1:exon:9414;Parent=Msa0950410-mRNA-1
chr6_3 five_prime_UTR 38779824 38779862 38779824 ID=Msa0950410-mRNA-1:five_prime_utr;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38779740 38779823 38779740 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38779589 38779650 38779589 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38777396 38777515 38777396 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38777206 38777305 38777206 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38776688 38776768 38776688 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38776243 38776292 38776243 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38775762 38775912 38775762 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38775627 38775683 38775627 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38774811 38774932 38774811 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 CDS 38774257 38774467 38774257 ID=Msa0950410-mRNA-1:cds;Parent=Msa0950410-mRNA-1
chr6_3 three_prime_UTR 38774153 38774256 38774153 ID=Msa0950410-mRNA-1:three_prime_utr;Parent=Msa0950410-mRNA-1
chr6_3 three_prime_UTR 38773938 38774121 38773938 ID=Msa0950410-mRNA-1:three_prime_utr;Parent=Msa0950410-mRNA-1
Gene Sequence

>Msa0950410

ATGAAAAGAAGTGGAACATTGCAATTACAACTTCAGTTTCACTTCTCCATTAACATTGTATCTCTCACAATGTTTCTTGTCAAGACATGGAGACAAACTGCCTTTGGTGTTTATGGTTATATGAATTTCACCAAACCTGCTTTTCTCGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGGGAAGAATTGCATTGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCTGAGGGTCTTGCACAGCGTGGTGCAAATGTCTATCTTGTATGTCGTAATAAGGAGAGAGGAGAGGCTGCTCTTTCCCAAATTCAGACTAAAACTGGCAATCAAAATGTGTATTTGGAGATTTGTGATCTGTCATCTGTCAAGGATATCAAGTCACTGGCTTCCAGGTTTTCTGAAAAGAATGTTCCAGTGCACGTGTTGGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACTACATCAGAAGGGTTTGAGTTGAACTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAATTGATGGTACCGTTACTGGAGAAAGCTTCCCCTGATGCACGTGTCATTACTGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGTATTCCGAGAGCAGCTTTAATGGGACCTTACAGTATGCTCGAAACAAGCGTGTTCAGGTTGCACTAACAGAAAATTGGGGTGAAACATACAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGCTTGCAGGGAAGCTTAGAACAAGCGAAGAAGGCGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAAACACCTTTCATTTAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCATTGATAGTCTTCGATCCTTGGCATCTCTTTCGGCTTAA

Protein sequence

>Msa0950410

MKRSGTLQLQLQFHFSINIVSLTMFLVKTWRQTAFGVYGYMNFTKPAFLEHSKNFKPEETETQIPGKNCIVTGANSGIGYAAAEGLAQRGANVYLVCRNKERGEAALSQIQTKTGNQNVYLEICDLSSVKDIKSLASRFSEKNVPVHVLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQYSESSFNGTLQYARNKRVQVALTENWGETYKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTVINSVIDSLRSLASLSA*