AlfalfaGEDB | Msa0318620

M. sativa cultivar zhongmu-4 / Msa0318620

KEGG: K09338
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318620	XP_003594520.2	99.641	836	3	0	1	836	1	836	0.0	1731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318620	sp\|Q6AST1\|HOX32_ORYSJ	78.828	836	167	6	8	836	27	859	0.0	1366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318620	G7IKU0	99.641	836	3	0	1	836	1	836	0.0	1731

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TFs/TRs:

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Gene ID	Type	Classification
Msa0318620	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050530	Msa0318620	0.800302	1.536255e-48	-8.615850e-47
Msa0063190	Msa0318620	0.834110	3.622340e-56	-8.615850e-47
Msa0072520	Msa0318620	0.802908	4.487751e-49	-8.615850e-47
Msa0084990	Msa0318620	0.856072	4.119417e-62	-8.615850e-47
Msa0109730	Msa0318620	0.809937	1.477899e-50	-8.615850e-47
Msa0134830	Msa0318620	0.807961	3.913188e-50	-8.615850e-47
Msa0177830	Msa0318620	0.857729	1.338234e-62	-8.615850e-47
Msa0177970	Msa0318620	0.855898	4.631120e-62	-8.615850e-47
Msa0225800	Msa0318620	0.805231	1.475231e-49	-8.615850e-47
Msa0235500	Msa0318620	0.819812	9.539537e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0318620	MtrunA17_Chr2g0292391	99.641	836	3	0	1	836	1	836	1731
Msa0318620	MtrunA17_Chr4g0028991	69.286	840	239	7	4	836	19	846	1193
Msa0318620	MtrunA17_Chr2g0331131	67.425	835	257	9	9	836	10	836	1162
Msa0318620	MtrunA17_Chr3g0140351	66.667	834	258	9	9	836	16	835	1154
Msa0318620	MtrunA17_Chr8g0340411	66.427	834	262	9	9	836	11	832	1151
Msa0318620	MtrunA17_Chr2g0326731	63.345	843	283	9	4	836	13	839	1097

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318620	AT2G34710.1	78.665	839	165	9	7	836	19	852	0.0	1360
Msa0318620	AT1G30490.1	76.813	841	170	10	7	836	15	841	0.0	1333
Msa0318620	AT5G60690.1	66.824	847	248	11	4	836	15	842	0.0	1145
Msa0318620	AT1G52150.1	66.189	837	261	13	9	836	13	836	0.0	1127
Msa0318620	AT1G52150.2	66.229	838	260	14	9	836	13	837	0.0	1125
Msa0318620	AT4G32880.1	64.628	834	278	12	9	836	11	833	0.0	1110
Msa0318620	AT1G52150.3	66.033	789	246	13	9	788	13	788	0.0	1050
Msa0318620	AT5G32670.1	80.000	70	14	0	286	355	37	106	1.24e-31	122
Msa0318620	AT3G03260.2	22.500	480	262	21	16	409	29	484	1.53e-11	68.2
Msa0318620	AT4G04890.2	30.534	131	62	3	13	122	65	187	2.61e-11	67.8

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Find 240 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAGAGAGAAGGTGT+TGG	0.574621	2_4:-17725548	None:intergenic
AAAACCAGAAGGCAATAAGA+GGG	0.641093	2_4:-17729708	None:intergenic
AAAATTAAGTATCTTGATTA+TGG	0.196543	2_4:-17730879	None:intergenic
AAACGGATACAACCTTAGGT+CGG	0.721957	2_4:+17729942	Msa0318620:CDS
AAAGAGAGTGGAGGCTCTCT+TGG	0.430669	2_4:+17725610	Msa0318620:five_prime_UTR
AAAGGTGTTACTAACCCAGC+TGG	0.505524	2_4:-17727346	None:intergenic
AAATGATACTTAACTGATTT+AGG	0.211026	2_4:-17729749	None:intergenic
AACCAAACTTTGATCTGTTT+AGG	0.371881	2_4:-17725902	None:intergenic
AACCTAAACAGATCAAAGTT+TGG	0.353061	2_4:+17725900	Msa0318620:CDS
AACTTGTTGCAGCTTTGCAG+TGG	0.607045	2_4:+17729611	Msa0318620:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAACAAAAAACAGTGA+AGG	-	chr2_4:17725515-17725534	None:intergenic	30.0%
TGAAAATGATGAAGCTAGTT+TGG	-	chr2_4:17725667-17725686	None:intergenic	30.0%
AACCTAAACAGATCAAAGTT+TGG	+	chr2_4:17725900-17725919	Msa0318620:CDS	30.0%
AACCAAACTTTGATCTGTTT+AGG	-	chr2_4:17725905-17725924	None:intergenic	30.0%
AATTTCATTGTTCAACAGCA+AGG	-	chr2_4:17727767-17727786	None:intergenic	30.0%
TTCTTAAAGATAGACTGTCA+TGG	+	chr2_4:17727841-17727860	Msa0318620:CDS	30.0%
TATACTACAAGTTTGGAAGA+TGG	+	chr2_4:17728099-17728118	Msa0318620:CDS	30.0%
CTATGAATCGTCAAAAATCT+TGG	+	chr2_4:17728491-17728510	Msa0318620:CDS	30.0%
AGATAGAGTGAGTTAGAATT+AGG	-	chr2_4:17728824-17728843	None:intergenic	30.0%
TAAATCCAATGTTCTTGATG+TGG	-	chr2_4:17729875-17729894	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	17725493	17731125	17725493	ID=Msa0318620;Name=Msa0318620
chr2_4	mRNA	17725493	17731125	17725493	ID=Msa0318620-mRNA-1;Parent=Msa0318620;Name=Msa0318620-mRNA-1;_AED=0.13;_eAED=0.13;_QI=247\|1\|1\|1\|1\|1\|18\|255\|836
chr2_4	exon	17725493	17725936	17725493	ID=Msa0318620-mRNA-1:exon:6576;Parent=Msa0318620-mRNA-1
chr2_4	exon	17726568	17726727	17726568	ID=Msa0318620-mRNA-1:exon:6577;Parent=Msa0318620-mRNA-1
chr2_4	exon	17727241	17727353	17727241	ID=Msa0318620-mRNA-1:exon:6578;Parent=Msa0318620-mRNA-1
chr2_4	exon	17727455	17727545	17727455	ID=Msa0318620-mRNA-1:exon:6579;Parent=Msa0318620-mRNA-1
chr2_4	exon	17727640	17727735	17727640	ID=Msa0318620-mRNA-1:exon:6580;Parent=Msa0318620-mRNA-1
chr2_4	exon	17727831	17727944	17727831	ID=Msa0318620-mRNA-1:exon:6581;Parent=Msa0318620-mRNA-1
chr2_4	exon	17728048	17728131	17728048	ID=Msa0318620-mRNA-1:exon:6582;Parent=Msa0318620-mRNA-1
chr2_4	exon	17728215	17728370	17728215	ID=Msa0318620-mRNA-1:exon:6583;Parent=Msa0318620-mRNA-1
chr2_4	exon	17728459	17728533	17728459	ID=Msa0318620-mRNA-1:exon:6584;Parent=Msa0318620-mRNA-1
chr2_4	exon	17728613	17728719	17728613	ID=Msa0318620-mRNA-1:exon:6585;Parent=Msa0318620-mRNA-1
chr2_4	exon	17728867	17729053	17728867	ID=Msa0318620-mRNA-1:exon:6586;Parent=Msa0318620-mRNA-1
chr2_4	exon	17729158	17729346	17729158	ID=Msa0318620-mRNA-1:exon:6587;Parent=Msa0318620-mRNA-1
chr2_4	exon	17729437	17729517	17729437	ID=Msa0318620-mRNA-1:exon:6588;Parent=Msa0318620-mRNA-1
chr2_4	exon	17729623	17729757	17729623	ID=Msa0318620-mRNA-1:exon:6589;Parent=Msa0318620-mRNA-1
chr2_4	exon	17729862	17730178	17729862	ID=Msa0318620-mRNA-1:exon:6590;Parent=Msa0318620-mRNA-1
chr2_4	exon	17730266	17730377	17730266	ID=Msa0318620-mRNA-1:exon:6591;Parent=Msa0318620-mRNA-1
chr2_4	exon	17730461	17730610	17730461	ID=Msa0318620-mRNA-1:exon:6592;Parent=Msa0318620-mRNA-1
chr2_4	exon	17730724	17731125	17730724	ID=Msa0318620-mRNA-1:exon:6593;Parent=Msa0318620-mRNA-1
chr2_4	five_prime_UTR	17725493	17725739	17725493	ID=Msa0318620-mRNA-1:five_prime_utr;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17725740	17725936	17725740	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17726568	17726727	17726568	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17727241	17727353	17727241	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17727455	17727545	17727455	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17727640	17727735	17727640	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17727831	17727944	17727831	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17728048	17728131	17728048	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17728215	17728370	17728215	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17728459	17728533	17728459	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17728613	17728719	17728613	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17728867	17729053	17728867	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17729158	17729346	17729158	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17729437	17729517	17729437	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17729623	17729757	17729623	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17729862	17730178	17729862	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17730266	17730377	17730266	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17730461	17730610	17730461	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	CDS	17730724	17730870	17730724	ID=Msa0318620-mRNA-1:cds;Parent=Msa0318620-mRNA-1
chr2_4	three_prime_UTR	17730871	17731125	17730871	ID=Msa0318620-mRNA-1:three_prime_utr;Parent=Msa0318620-mRNA-1

Gene Sequence

>Msa0318620

ATGGCACTTTCTATGCATAAAGAAATGGATGCTGGTAAATATGTAAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTATTCAGAATGTCCTAAGCCTAGTTCTTTGAGAAGACAACAACTCATTAGAGAATGTCCTATCCTTTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAAAACCGAAGATGCCGTGAGAAGCAAAGAAAGGAAGCTTCACGTTTACAGACAGTGAATAGGAAGTTGTCTGCAATGAACAAGCTCTTGATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCATCTGGTGTATGAAAATGGATACATGAAGCAACAGATTCATACTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAACTCAGCGTCCTCAAAGGGATGCAAACAACCCAGCTGGTCTTCTCGCCGTGGCTGAGGAGACCCTGGCAGAGTTCCTATCTAAGGCTACCGGAACTGCTGTCGACTGGGTGCAGATGATTGGGATGAAGCCTGGTCCGGAATCTATTGGTATCGTTGCTGTTTCCCGCAACTCTAGTGGGATAGCTGCGCGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCCGAGATTCTTAAAGATAGACTGTCATGGTATCGTGACTGCCGATGCGTTGATGTATTGAGTATTGTTCCCACTGGTGGTGGTGGTACAATAGAGCTTATGTACATGCAGACGTATGCGCCTACAACTTTGGCTGCAGCACGAGACTTTTGGACGCTGAGATATACTACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCGTTGAATGCTTCTACTGGTGGCCCTACAGGGCCTTCTCCGTCAAATTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTTCCTTATTAGACCTTGCGAGGGGGGCGGATCCATTATTCATATTGTTGATCACGTTGATTTAGATGTTTGGAGTGTCCCTGAAGTTCTGAGGCCCCTCTATGAATCGTCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCATTGCAACACATAAAACAGATAGCACAAGAATCCAGTGGAGAAATTCAGTATGGTGGCGGGCGCCAACCAGCTGTTTTGAGAACTTTTAGTCAGAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGATTTGTCGATGACGGTTGGTCGTTGCTGGGAAATGATGGTGTTGAAGACGTAACAATTGCTGTAAACTCGTCTCCAAACAAGTTTTTGGGGTCCAACTATTCATCAATGTTCCCAACATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGATCAGAATGGGCTGATTATGGCGTTGATGCCTACTCTGCTACTTGTCTCAAGTCTAGCCCCTATGCAGTTCCGTGTCCAAGACCCGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCCTACGATCGAGCACGAAGAGTTCCTGGAGGTTGTTTGTATAGAGGGACATGCATTCTCCCCAGAAGATGTTGCACTGGCACGTGATATGTATCTTTTGCAGCTTTGCAGTGGAATTGATGAAAATTCAATTGGAGCATGTGCTCAACTTGTGTTTGCCCCTATAGATGAATCCTTTGCAGATGATGCCCTCTTATTGCCTTCTGGTTTTCGAGTTATTCCCTTGGATCCTAAATCAGACGGTCCAACCACATCAAGAACATTGGATTTACTTGAAGGATCTAGTAATGCTCGTCCATCTGGTGAAGGTGCTGGTTCAAACGGATACAACCTTAGGTCGGTCCTTACAATTGCATTCCAATTTACCTTTGAGAATCACTTGCGCGACAATGTGGCTTCCATGGCTCGCCAGTATGTGCGTAGTGTTGTGGCATCAGTTCAGAGGGTTGCCATGGCAATTGCGCCCTCTCGGCCAGGTACTCAGCTTGGGCCAAAGTCTCTTCCTGGTTCGCCAGAAGCTCATGCTTTGGCACGATGGATATCTAGAAGCTACAGGATGCACACTGGTGCCGAGCTTTTTAGAGTTGAGTCCGCAGCGAGTGATGCAATATTGAAACAACTTTGGCACCATTCTGATGCAATTATGTGCTGTTCTGTAAAAACAAATGCATCTCCAATATTCACCTTTTCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTAGTTGCTCTTCAAGATATTATGCTTGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATTATGCAACAGGGTTATGCATCTCTGCCAGGAGGGATTTGTGTATCAAGTATGAATAGGCCAGTGTCTTATGAGCAAGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGCTTAGCTTTCATGTTCATCAACTGGTCCTTTGTCTGA

Protein sequence

>Msa0318620

MALSMHKEMDAGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCDSVVMSGQNQQQNPTQRPQRDANNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVAVSRNSSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNASTGGPTGPSPSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIKQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAVNSSPNKFLGSNYSSMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSATCLKSSPYAVPCPRPGGFPSSQVILPLAPTIEHEEFLEVVCIEGHAFSPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPTTSRTLDLLEGSSNARPSGEGAGSNGYNLRSVLTIAFQFTFENHLRDNVASMARQYVRSVVASVQRVAMAIAPSRPGTQLGPKSLPGSPEAHALARWISRSYRMHTGAELFRVESAASDAILKQLWHHSDAIMCCSVKTNASPIFTFSNQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYASLPGGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV*