Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177260 | XP_003591981.1 | 82.381 | 210 | 12 | 1 | 1 | 210 | 1 | 185 | 3.91e-119 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177260 | G7I9N5 | 82.381 | 210 | 12 | 1 | 1 | 210 | 1 | 185 | 1.87e-119 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0177260 | 0.803537 | 3.325231e-49 | -8.615850e-47 |
| Msa0004590 | Msa0177260 | 0.811505 | 6.770675e-51 | -8.615850e-47 |
| Msa0012790 | Msa0177260 | 0.807568 | 4.742465e-50 | -8.615850e-47 |
| Msa0024280 | Msa0177260 | 0.810619 | 1.053653e-50 | -8.615850e-47 |
| Msa0024290 | Msa0177260 | 0.801743 | 7.796887e-49 | -8.615850e-47 |
| Msa0048950 | Msa0177260 | 0.833997 | 3.866528e-56 | -8.615850e-47 |
| Msa0057860 | Msa0177260 | 0.802102 | 6.579616e-49 | -8.615850e-47 |
| Msa0059880 | Msa0177260 | 0.834422 | 3.025533e-56 | -8.615850e-47 |
| Msa0061590 | Msa0177260 | 0.803605 | 3.218585e-49 | -8.615850e-47 |
| Msa0069480 | Msa0177260 | 0.922304 | 1.169971e-88 | -8.615850e-47 |
| Msa0072030 | Msa0177260 | 0.831273 | 1.832425e-55 | -8.615850e-47 |
| Msa0102930 | Msa0177260 | 0.805452 | 1.326105e-49 | -8.615850e-47 |
| Msa0120050 | Msa0177260 | 0.819582 | 1.076608e-52 | -8.615850e-47 |
| Msa0131460 | Msa0177260 | 0.934476 | 3.807977e-96 | -8.615850e-47 |
| Msa0132080 | Msa0177260 | -0.821546 | 3.811909e-53 | -8.615850e-47 |
| Msa0134570 | Msa0177260 | 0.808435 | 3.101830e-50 | -8.615850e-47 |
| Msa0140270 | Msa0177260 | 0.822245 | 2.626207e-53 | -8.615850e-47 |
| Msa0146210 | Msa0177260 | 0.817089 | 3.951006e-52 | -8.615850e-47 |
| Msa0147680 | Msa0177260 | 0.829205 | 5.864670e-55 | -8.615850e-47 |
| Msa0150910 | Msa0177260 | 0.830888 | 2.277916e-55 | -8.615850e-47 |
| Msa0152660 | Msa0177260 | 0.807088 | 5.995154e-50 | -8.615850e-47 |
| Msa0163340 | Msa0177260 | 0.823974 | 1.037259e-53 | -8.615850e-47 |
| Msa0177260 | Msa0186200 | 0.802326 | 5.916160e-49 | -8.615850e-47 |
| Msa0177260 | Msa0190670 | 0.813710 | 2.229636e-51 | -8.615850e-47 |
| Msa0177260 | Msa0190890 | 0.805590 | 1.240541e-49 | -8.615850e-47 |
| Msa0177260 | Msa0196260 | 0.808118 | 3.624206e-50 | -8.615850e-47 |
| Msa0177260 | Msa0210790 | 0.831957 | 1.243290e-55 | -8.615850e-47 |
| Msa0177260 | Msa0210850 | 0.831526 | 1.587631e-55 | -8.615850e-47 |
| Msa0177260 | Msa0220090 | 0.824062 | 9.890552e-54 | -8.615850e-47 |
| Msa0177260 | Msa0223590 | 0.810442 | 1.150085e-50 | -8.615850e-47 |
| Msa0177260 | Msa0223880 | 0.819937 | 8.933528e-53 | -8.615850e-47 |
| Msa0177260 | Msa0235080 | 0.810447 | 1.147375e-50 | -8.615850e-47 |
| Msa0177260 | Msa0239610 | -0.800764 | 1.236767e-48 | -8.615850e-47 |
| Msa0177260 | Msa0251120 | 0.835614 | 1.514265e-56 | -8.615850e-47 |
| Msa0177260 | Msa0264890 | 0.813796 | 2.135121e-51 | -8.615850e-47 |
| Msa0177260 | Msa0265060 | 0.812965 | 3.250810e-51 | -8.615850e-47 |
| Msa0177260 | Msa0273360 | 0.806980 | 6.319675e-50 | -8.615850e-47 |
| Msa0177260 | Msa0278480 | 0.802380 | 5.766099e-49 | -8.615850e-47 |
| Msa0177260 | Msa0298270 | 0.803035 | 4.223906e-49 | -8.615850e-47 |
| Msa0177260 | Msa0327890 | 0.839113 | 1.924130e-57 | -8.615850e-47 |
| Msa0177260 | Msa0336070 | 0.804022 | 2.636828e-49 | -8.615850e-47 |
| Msa0177260 | Msa0340650 | 0.820792 | 5.686522e-53 | -8.615850e-47 |
| Msa0177260 | Msa0349910 | 0.807431 | 5.070794e-50 | -8.615850e-47 |
| Msa0177260 | Msa0349930 | 0.806418 | 8.308013e-50 | -8.615850e-47 |
| Msa0177260 | Msa0374130 | 0.803457 | 3.454070e-49 | -8.615850e-47 |
| Msa0177260 | Msa0380680 | 0.803325 | 3.678627e-49 | -8.615850e-47 |
| Msa0177260 | Msa0425950 | 0.810793 | 9.659035e-51 | -8.615850e-47 |
| Msa0177260 | Msa0426030 | 0.816259 | 6.063306e-52 | -8.615850e-47 |
| Msa0177260 | Msa0426170 | 0.827352 | 1.640202e-54 | -8.615850e-47 |
| Msa0177260 | Msa0427260 | -0.804625 | 1.974438e-49 | -8.615850e-47 |
| Msa0177260 | Msa0430320 | 0.803381 | 3.582715e-49 | -8.615850e-47 |
| Msa0177260 | Msa0430460 | 0.812314 | 4.512972e-51 | -8.615850e-47 |
| Msa0177260 | Msa0444200 | 0.814029 | 1.896546e-51 | -8.615850e-47 |
| Msa0177260 | Msa0472390 | 0.801408 | 9.133268e-49 | -8.615850e-47 |
| Msa0177260 | Msa0491760 | 0.800236 | 1.584346e-48 | -8.615850e-47 |
| Msa0177260 | Msa0491770 | 0.824051 | 9.949675e-54 | -8.615850e-47 |
| Msa0177260 | Msa0522280 | 0.804701 | 1.904060e-49 | -8.615850e-47 |
| Msa0177260 | Msa0529360 | 0.802393 | 5.730020e-49 | -8.615850e-47 |
| Msa0177260 | Msa0535570 | 0.804637 | 1.963199e-49 | -8.615850e-47 |
| Msa0177260 | Msa0537210 | 0.806043 | 9.961887e-50 | -8.615850e-47 |
| Msa0177260 | Msa0538050 | -0.800827 | 1.200722e-48 | -8.615850e-47 |
| Msa0177260 | Msa0562050 | 0.807084 | 6.007689e-50 | -8.615850e-47 |
| Msa0177260 | Msa0566460 | 0.801009 | 1.102227e-48 | -8.615850e-47 |
| Msa0177260 | Msa0566930 | 0.804592 | 2.006397e-49 | -8.615850e-47 |
| Msa0177260 | Msa0569100 | 0.801611 | 8.296274e-49 | -8.615850e-47 |
| Msa0177260 | Msa0580210 | 0.819996 | 8.661222e-53 | -8.615850e-47 |
| Msa0177260 | Msa0583390 | 0.819958 | 8.836501e-53 | -8.615850e-47 |
| Msa0177260 | Msa0602050 | 0.808161 | 3.548401e-50 | -8.615850e-47 |
| Msa0177260 | Msa0605470 | 0.812432 | 4.253189e-51 | -8.615850e-47 |
| Msa0177260 | Msa0619390 | -0.800992 | 1.111114e-48 | -8.615850e-47 |
| Msa0177260 | Msa0623980 | 0.809935 | 1.479621e-50 | -8.615850e-47 |
| Msa0177260 | Msa0624930 | 0.808588 | 2.877321e-50 | -8.615850e-47 |
| Msa0177260 | Msa0626980 | 0.801734 | 7.828800e-49 | -8.615850e-47 |
| Msa0177260 | Msa0627360 | 0.800454 | 1.430540e-48 | -8.615850e-47 |
| Msa0177260 | Msa0643190 | 0.805364 | 1.383621e-49 | -8.615850e-47 |
| Msa0177260 | Msa0643840 | 0.801266 | 9.764974e-49 | -8.615850e-47 |
| Msa0177260 | Msa0655430 | 0.834342 | 3.167662e-56 | -8.615850e-47 |
| Msa0177260 | Msa0658120 | 0.808738 | 2.671835e-50 | -8.615850e-47 |
| Msa0177260 | Msa0671400 | 0.805117 | 1.558051e-49 | -8.615850e-47 |
| Msa0177260 | Msa0673940 | 0.809763 | 1.610959e-50 | -8.615850e-47 |
| Msa0177260 | Msa0676200 | 0.804028 | 2.629939e-49 | -8.615850e-47 |
| Msa0177260 | Msa0678620 | 0.808790 | 2.604303e-50 | -8.615850e-47 |
| Msa0177260 | Msa0695630 | 0.819767 | 9.767721e-53 | -8.615850e-47 |
| Msa0177260 | Msa0699230 | 0.810106 | 1.359466e-50 | -8.615850e-47 |
| Msa0177260 | Msa0705520 | 0.832256 | 1.048944e-55 | -8.615850e-47 |
| Msa0177260 | Msa0716700 | 0.826865 | 2.145155e-54 | -8.615850e-47 |
| Msa0177260 | Msa0727480 | 0.824205 | 9.157177e-54 | -8.615850e-47 |
| Msa0177260 | Msa0738410 | 0.802511 | 5.418891e-49 | -8.615850e-47 |
| Msa0177260 | Msa0754750 | 0.810034 | 1.408489e-50 | -8.615850e-47 |
| Msa0177260 | Msa0761830 | 0.823618 | 1.257368e-53 | -8.615850e-47 |
| Msa0177260 | Msa0768670 | 0.811282 | 7.569932e-51 | -8.615850e-47 |
| Msa0177260 | Msa0768720 | 0.814628 | 1.398791e-51 | -8.615850e-47 |
| Msa0177260 | Msa0772420 | 0.825458 | 4.637493e-54 | -8.615850e-47 |
| Msa0177260 | Msa0794100 | 0.804588 | 2.009606e-49 | -8.615850e-47 |
| Msa0177260 | Msa0804170 | 0.803474 | 3.427362e-49 | -8.615850e-47 |
| Msa0177260 | Msa0806930 | 0.801817 | 7.527476e-49 | -8.615850e-47 |
| Msa0177260 | Msa0814160 | 0.820121 | 8.107035e-53 | -8.615850e-47 |
| Msa0177260 | Msa0828350 | 0.815397 | 9.441596e-52 | -8.615850e-47 |
| Msa0177260 | Msa0842180 | 0.803167 | 3.966503e-49 | -8.615850e-47 |
| Msa0177260 | Msa0854840 | 0.806417 | 8.308595e-50 | -8.615850e-47 |
| Msa0177260 | Msa0861400 | -0.823366 | 1.439594e-53 | -8.615850e-47 |
| Msa0177260 | Msa0869660 | 0.807605 | 4.658855e-50 | -8.615850e-47 |
| Msa0177260 | Msa0871420 | 0.803083 | 4.129360e-49 | -8.615850e-47 |
| Msa0177260 | Msa0883640 | 0.806454 | 8.160209e-50 | -8.615850e-47 |
| Msa0177260 | Msa0893840 | 0.811878 | 5.616287e-51 | -8.615850e-47 |
| Msa0177260 | Msa0898830 | -0.807866 | 4.099159e-50 | -8.615850e-47 |
| Msa0177260 | Msa0902340 | 0.809065 | 2.274790e-50 | -8.615850e-47 |
| Msa0177260 | Msa0910830 | 0.820010 | 8.595931e-53 | -8.615850e-47 |
| Msa0177260 | Msa0936630 | 0.801570 | 8.458690e-49 | -8.615850e-47 |
| Msa0177260 | Msa0960090 | 0.808432 | 3.105999e-50 | -8.615850e-47 |
| Msa0177260 | Msa0967900 | -0.806989 | 6.292977e-50 | -8.615850e-47 |
| Msa0177260 | Msa0985700 | 0.806037 | 9.990601e-50 | -8.615850e-47 |
| Msa0177260 | Msa0987670 | 0.803883 | 2.818211e-49 | -8.615850e-47 |
| Msa0177260 | Msa0993450 | 0.812489 | 4.133034e-51 | -8.615850e-47 |
| Msa0177260 | Msa1003110 | 0.803239 | 3.832217e-49 | -8.615850e-47 |
| Msa0177260 | Msa1006170 | 0.810513 | 1.110559e-50 | -8.615850e-47 |
| Msa0177260 | Msa1021620 | 0.824315 | 8.626151e-54 | -8.615850e-47 |
| Msa0177260 | Msa1024350 | 0.818640 | 1.764015e-52 | -8.615850e-47 |
| Msa0177260 | Msa1037350 | 0.805173 | 1.517090e-49 | -8.615850e-47 |
| Msa0177260 | Msa1050540 | -0.803046 | 4.202905e-49 | -8.615850e-47 |
| Msa0177260 | Msa1076830 | 0.854572 | 1.125662e-61 | -8.615850e-47 |
| Msa0177260 | Msa1081610 | 0.801678 | 8.040854e-49 | -8.615850e-47 |
| Msa0177260 | Msa1104960 | 0.801413 | 9.109671e-49 | -8.615850e-47 |
| Msa0177260 | Msa1109880 | 0.810421 | 1.162232e-50 | -8.615850e-47 |
| Msa0177260 | Msa1109890 | 0.806053 | 9.912462e-50 | -8.615850e-47 |
| Msa0177260 | Msa1123010 | 0.812686 | 3.741594e-51 | -8.615850e-47 |
| Msa0177260 | Msa1170320 | 0.806376 | 8.475800e-50 | -8.615850e-47 |
| Msa0177260 | Msa1205270 | -0.806513 | 7.932627e-50 | -8.615850e-47 |
| Msa0177260 | Msa1214960 | 0.840123 | 1.051082e-57 | -8.615850e-47 |
| Msa0177260 | Msa1225850 | 0.801804 | 7.575381e-49 | -8.615850e-47 |
| Msa0177260 | Msa1225890 | 0.823718 | 1.190919e-53 | -8.615850e-47 |
| Msa0177260 | Msa1275220 | 0.808298 | 3.317460e-50 | -8.615850e-47 |
| Msa0177260 | Msa1286420 | 0.805675 | 1.190675e-49 | -8.615850e-47 |
| Msa0177260 | Msa1323030 | 0.816615 | 5.046594e-52 | -8.615850e-47 |
| Msa0177260 | Msa1323120 | 0.819756 | 9.826004e-53 | -8.615850e-47 |
| Msa0177260 | Msa1323260 | -0.804894 | 1.734809e-49 | -8.615850e-47 |
| Msa0177260 | Msa1343450 | -0.802734 | 4.873911e-49 | -8.615850e-47 |
| Msa0177260 | Msa1344930 | 0.827223 | 1.761240e-54 | -8.615850e-47 |
| Msa0177260 | Msa1365850 | 0.900356 | 7.952963e-78 | -8.615850e-47 |
| Msa0177260 | Msa1373990 | 0.817355 | 3.443177e-52 | -8.615850e-47 |
| Msa0177260 | Msa1376070 | 0.849538 | 3.033241e-60 | -8.615850e-47 |
| Msa0177260 | Msa1377520 | 0.819188 | 1.324467e-52 | -8.615850e-47 |
| Msa0177260 | Msa1407670 | 0.853890 | 1.771431e-61 | -8.615850e-47 |
| Msa0177260 | Msa1413020 | 0.806517 | 7.915223e-50 | -8.615850e-47 |
| Msa0177260 | Msa1421120 | 0.800295 | 1.540862e-48 | -8.615850e-47 |
| Msa0177260 | Msa1421130 | 0.824416 | 8.170365e-54 | -8.615850e-47 |
| Msa0177260 | Msa1422150 | -0.807605 | 4.659593e-50 | -8.615850e-47 |
| Msa0177260 | Msa1445900 | 0.814008 | 1.916694e-51 | -8.615850e-47 |
| Msa0177260 | Msa1449770 | 0.850988 | 1.189001e-60 | -8.615850e-47 |
| Msa0177260 | Msa1459610 | 0.819632 | 1.048704e-52 | -8.615850e-47 |
| Msa0177260 | Msa1466530 | 0.851407 | 9.057414e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177260 | MtrunA17_Chr1g0200231 | 82.381 | 210 | 12 | 1 | 1 | 210 | 1 | 185 | 3.60e-123 | 346 |
| Msa0177260 | MtrunA17_Chr1g0200221 | 71.564 | 211 | 34 | 2 | 1 | 210 | 1 | 186 | 2.91e-105 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177260 | AT2G35830.2 | 56.373 | 204 | 62 | 3 | 7 | 209 | 8 | 185 | 5.40e-76 | 227 |
| Msa0177260 | AT2G35810.2 | 54.854 | 206 | 61 | 4 | 7 | 209 | 22 | 198 | 1.16e-75 | 226 |
| Msa0177260 | AT2G35810.1 | 54.854 | 206 | 61 | 4 | 7 | 209 | 22 | 198 | 1.16e-75 | 226 |
| Msa0177260 | AT2G35820.1 | 52.683 | 205 | 66 | 3 | 7 | 209 | 8 | 183 | 5.59e-72 | 217 |
| Msa0177260 | AT2G35830.1 | 56.311 | 206 | 54 | 5 | 7 | 209 | 8 | 180 | 5.93e-71 | 214 |
| Msa0177260 | AT2G35820.2 | 52.683 | 205 | 66 | 3 | 7 | 209 | 98 | 273 | 2.19e-70 | 216 |
Find 60 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTATGAAAACAGTAAA+TGG | 0.259839 | 1_4:-64167107 | None:intergenic |
| TCACCAGACAGCCTGGGTTT+TGG | 0.277909 | 1_4:+64165381 | Msa0177260:CDS |
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1_4:+64166520 | Msa0177260:CDS |
| TGATTCAGATACATAATTAC+TGG | 0.306231 | 1_4:+64167031 | Msa0177260:three_prime_UTR |
| CGGTGAAGCTTGACGAATTT+GGG | 0.309643 | 1_4:-64166676 | None:intergenic |
| GCGGTGAAGCTTGACGAATT+TGG | 0.316031 | 1_4:-64166677 | None:intergenic |
| CGTGAAGGTGGTGACAATTA+AGG | 0.355574 | 1_4:+64165305 | Msa0177260:CDS |
| TGGAAATTTAAGCATGTGTT+TGG | 0.364978 | 1_4:+64167051 | Msa0177260:three_prime_UTR |
| CGAGCCTTCACCAGACAGCC+TGG | 0.372861 | 1_4:+64165374 | Msa0177260:CDS |
| AGAGCATGTCAAATGAATTC+AGG | 0.383024 | 1_4:-64166822 | None:intergenic |
| TACAACATGTTACCATTTCA+AGG | 0.403921 | 1_4:+64167123 | Msa0177260:three_prime_UTR |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1_4:+64166512 | Msa0177260:CDS |
| ATGAAAACCTGGGAATTCCT+TGG | 0.436299 | 1_4:-64165431 | None:intergenic |
| GACCTGAAATCTTGAAAACT+TGG | 0.446401 | 1_4:-64166654 | None:intergenic |
| GGACCAAAACCCAGGCTGTC+TGG | 0.448168 | 1_4:-64165384 | None:intergenic |
| GATGTAAGATTCCATTGAAA+GGG | 0.457158 | 1_4:-64166790 | None:intergenic |
| GAGATCAAGTTGAGCATCAT+GGG | 0.463032 | 1_4:-64165406 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1_4:+64166499 | Msa0177260:CDS |
| TGAAAACCTGGGAATTCCTT+GGG | 0.471791 | 1_4:-64165430 | None:intergenic |
| GTGATTCTAGAAAACTTTAG+TGG | 0.473787 | 1_4:-64166460 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1_4:+64166502 | Msa0177260:CDS |
| ATCTGAATCAATTGAAATGT+TGG | 0.480871 | 1_4:-64167018 | None:intergenic |
| ATCTCACCCAAGGAATTCCC+AGG | 0.491993 | 1_4:+64165424 | Msa0177260:CDS |
| TGAGATCAAGTTGAGCATCA+TGG | 0.496448 | 1_4:-64165407 | None:intergenic |
| CAAATGTGACTCAGTGCCTT+GGG | 0.497185 | 1_4:+64166491 | Msa0177260:CDS |
| CACCGCGGTACATGGCATGC+TGG | 0.498508 | 1_4:+64166694 | Msa0177260:CDS |
| TCATTTGAATCAACAACTGA+TGG | 0.498895 | 1_4:-64166553 | None:intergenic |
| TCAAGCTTCACCGCGGTACA+TGG | 0.506906 | 1_4:+64166686 | Msa0177260:CDS |
| CCGTAGTCTTTGAAGTTCGC+CGG | 0.533633 | 1_4:-64165342 | None:intergenic |
| CATCATGGGGACCAAAACCC+AGG | 0.536245 | 1_4:-64165392 | None:intergenic |
| GCAAATGTGACTCAGTGCCT+TGG | 0.539728 | 1_4:+64166490 | Msa0177260:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1_4:-64166515 | None:intergenic |
| AGATGTAAGATTCCATTGAA+AGG | 0.548712 | 1_4:-64166791 | None:intergenic |
| GAGCCTTCACCAGACAGCCT+GGG | 0.557955 | 1_4:+64165375 | Msa0177260:CDS |
| ACAACATGTTACCATTTCAA+GGG | 0.558904 | 1_4:+64167124 | Msa0177260:three_prime_UTR |
| AAACCCAGGCTGTCTGGTGA+AGG | 0.563612 | 1_4:-64165378 | None:intergenic |
| AATGAAATCAAAGATGACTC+AGG | 0.574790 | 1_4:+64166571 | Msa0177260:CDS |
| TGATTCTAGAAAACTTTAGT+GGG | 0.575199 | 1_4:-64166459 | None:intergenic |
| TAAGGCGATCGAAGCAACTC+CGG | 0.581240 | 1_4:+64165323 | Msa0177260:CDS |
| TTATGTTCCTCCCACCGTTG+AGG | 0.588581 | 1_4:+64166627 | Msa0177260:CDS |
| CACAACTTTAAGAATGACAA+TGG | 0.590296 | 1_4:+64166951 | Msa0177260:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1_4:+64166525 | Msa0177260:CDS |
| AACTTGGACGTCCTCAACGG+TGG | 0.605196 | 1_4:-64166638 | None:intergenic |
| GAACTTCAAAGACTACGGTC+AGG | 0.607170 | 1_4:+64165347 | Msa0177260:CDS |
| AATAATGGAGAGCGTGAAGG+TGG | 0.607965 | 1_4:+64165293 | None:intergenic |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 1_4:-64166507 | None:intergenic |
| AATAATAATGGAGAGCGTGA+AGG | 0.623264 | 1_4:+64165290 | None:intergenic |
| GAAAACTTGGACGTCCTCAA+CGG | 0.628183 | 1_4:-64166641 | None:intergenic |
| CCGGCGAACTTCAAAGACTA+CGG | 0.628730 | 1_4:+64165342 | Msa0177260:CDS |
| TGGACGTCCTCAACGGTGGG+AGG | 0.630671 | 1_4:-64166634 | None:intergenic |
| ACTTGGACGTCCTCAACGGT+GGG | 0.633042 | 1_4:-64166637 | None:intergenic |
| ATGTAAGATTCCATTGAAAG+GGG | 0.634905 | 1_4:-64166789 | None:intergenic |
| GCTCAACTTGATCTCACCCA+AGG | 0.638310 | 1_4:+64165414 | Msa0177260:CDS |
| ATCGTGCTAGACTTAAATAG+AGG | 0.664302 | 1_4:-64166718 | None:intergenic |
| TCTATTTAAGTCTAGCACGA+TGG | 0.669627 | 1_4:+64166720 | Msa0177260:CDS |
| GACCAGCATGCCATGTACCG+CGG | 0.687313 | 1_4:-64166696 | None:intergenic |
| ACGGTCGTTAAGTCGTGCGG+CGG | 0.689464 | 1_4:+64166598 | Msa0177260:CDS |
| AAAACGGTCGTTAAGTCGTG+CGG | 0.693454 | 1_4:+64166595 | Msa0177260:CDS |
| AGATCAAGTTGAGCATCATG+GGG | 0.694936 | 1_4:-64165405 | None:intergenic |
| AAATTCGTCAAGCTTCACCG+CGG | 0.805303 | 1_4:+64166679 | Msa0177260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAACATATAGAATT+TGG | - | chr1_4:64165491-64165510 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+TGG | + | chr1_4:64165513-64165532 | Msa0177260:intron | 10.0% |
| !!! | TTTTTTTCACTTTAATTTTT+GGG | + | chr1_4:64165514-64165533 | Msa0177260:intron | 10.0% |
| !! | GAAATATATATATATGATAA+TGG | - | chr1_4:64165901-64165920 | None:intergenic | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | chr1_4:64166400-64166419 | None:intergenic | 10.0% |
| !!! | TTATTTTGTCATTTTTTTAA+TGG | + | chr1_4:64166875-64166894 | Msa0177260:intron | 10.0% |
| !! | AAAAATTAACATATAGAATT+TGG | - | chr1_4:64165491-64165510 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+TGG | + | chr1_4:64165513-64165532 | Msa0177260:intron | 10.0% |
| !!! | TTTTTTTCACTTTAATTTTT+GGG | + | chr1_4:64165514-64165533 | Msa0177260:intron | 10.0% |
| !! | GAAATATATATATATGATAA+TGG | - | chr1_4:64165901-64165920 | None:intergenic | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | chr1_4:64166400-64166419 | None:intergenic | 10.0% |
| !!! | TTATTTTGTCATTTTTTTAA+TGG | + | chr1_4:64166875-64166894 | Msa0177260:intron | 10.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | chr1_4:64165463-64165482 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | chr1_4:64166009-64166028 | Msa0177260:intron | 15.0% |
| !! | AAAGGAAACAAAAAAAAAAA+AGG | - | chr1_4:64166135-64166154 | None:intergenic | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | chr1_4:64166397-64166416 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | chr1_4:64165463-64165482 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | chr1_4:64166009-64166028 | Msa0177260:intron | 15.0% |
| !! | AAAGGAAACAAAAAAAAAAA+AGG | - | chr1_4:64166135-64166154 | None:intergenic | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | chr1_4:64166397-64166416 | None:intergenic | 15.0% |
| !! | TCTTAGAAAAAATGAAGAAT+AGG | + | chr1_4:64165689-64165708 | Msa0177260:intron | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | chr1_4:64165722-64165741 | Msa0177260:intron | 20.0% |
| !!! | CCAATAATATATAGTTTTGA+CGG | - | chr1_4:64165806-64165825 | None:intergenic | 20.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | chr1_4:64165865-64165884 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTCCTTTTGATA+TGG | + | chr1_4:64166140-64166159 | Msa0177260:intron | 20.0% |
| !!! | AATTTTGCTATAAAGTAGTT+TGG | - | chr1_4:64166213-64166232 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | chr1_4:64166410-64166429 | Msa0177260:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | chr1_4:64166767-64166786 | None:intergenic | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | chr1_4:64166766-64166785 | Msa0177260:CDS | 20.0% |
| !!! | TTGTCATTTTTTTAATGGTT+TGG | + | chr1_4:64166880-64166899 | Msa0177260:intron | 20.0% |
| !! | TCTTAGAAAAAATGAAGAAT+AGG | + | chr1_4:64165689-64165708 | Msa0177260:intron | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | chr1_4:64165722-64165741 | Msa0177260:intron | 20.0% |
| !!! | CCAATAATATATAGTTTTGA+CGG | - | chr1_4:64165806-64165825 | None:intergenic | 20.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | chr1_4:64165865-64165884 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTCCTTTTGATA+TGG | + | chr1_4:64166140-64166159 | Msa0177260:intron | 20.0% |
| !!! | AATTTTGCTATAAAGTAGTT+TGG | - | chr1_4:64166213-64166232 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | chr1_4:64166410-64166429 | Msa0177260:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | chr1_4:64166767-64166786 | None:intergenic | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | chr1_4:64166766-64166785 | Msa0177260:CDS | 20.0% |
| !!! | TTGTCATTTTTTTAATGGTT+TGG | + | chr1_4:64166880-64166899 | Msa0177260:intron | 20.0% |
| !!! | TTTCACTTTAATTTTTGGGT+TGG | + | chr1_4:64165518-64165537 | Msa0177260:intron | 25.0% |
| ! | CCGTCAAAACTATATATTAT+TGG | + | chr1_4:64165803-64165822 | Msa0177260:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | chr1_4:64165842-64165861 | None:intergenic | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | chr1_4:64165923-64165942 | None:intergenic | 25.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | chr1_4:64166046-64166065 | Msa0177260:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | chr1_4:64166047-64166066 | Msa0177260:intron | 25.0% |
| ! | CTTAGTTTATCCATATCAAA+AGG | - | chr1_4:64166153-64166172 | None:intergenic | 25.0% |
| ! | TATATACTACCCTATTATCT+TGG | + | chr1_4:64166174-64166193 | Msa0177260:intron | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | chr1_4:64166216-64166235 | Msa0177260:intron | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | chr1_4:64166462-64166481 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | chr1_4:64166911-64166930 | Msa0177260:intron | 25.0% |
| ! | ATCTGAATCAATTGAAATGT+TGG | - | chr1_4:64167021-64167040 | None:intergenic | 25.0% |
| ! | TGATTCAGATACATAATTAC+TGG | + | chr1_4:64167031-64167050 | Msa0177260:three_prime_UTR | 25.0% |
| ! | TGTTGTATGAAAACAGTAAA+TGG | - | chr1_4:64167110-64167129 | None:intergenic | 25.0% |
| !!! | TTTCACTTTAATTTTTGGGT+TGG | + | chr1_4:64165518-64165537 | Msa0177260:intron | 25.0% |
| ! | CCGTCAAAACTATATATTAT+TGG | + | chr1_4:64165803-64165822 | Msa0177260:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | chr1_4:64165842-64165861 | None:intergenic | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | chr1_4:64165923-64165942 | None:intergenic | 25.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | chr1_4:64166046-64166065 | Msa0177260:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | chr1_4:64166047-64166066 | Msa0177260:intron | 25.0% |
| ! | CTTAGTTTATCCATATCAAA+AGG | - | chr1_4:64166153-64166172 | None:intergenic | 25.0% |
| ! | TATATACTACCCTATTATCT+TGG | + | chr1_4:64166174-64166193 | Msa0177260:intron | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | chr1_4:64166216-64166235 | Msa0177260:intron | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | chr1_4:64166462-64166481 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | chr1_4:64166911-64166930 | Msa0177260:intron | 25.0% |
| ! | ATCTGAATCAATTGAAATGT+TGG | - | chr1_4:64167021-64167040 | None:intergenic | 25.0% |
| ! | TGATTCAGATACATAATTAC+TGG | + | chr1_4:64167031-64167050 | Msa0177260:three_prime_UTR | 25.0% |
| ! | TGTTGTATGAAAACAGTAAA+TGG | - | chr1_4:64167110-64167129 | None:intergenic | 25.0% |
| TTGGTGAAATATGAAAACCT+GGG | - | chr1_4:64165444-64165463 | None:intergenic | 30.0% | |
| TACCTATGATTAAGATCGAA+CGG | - | chr1_4:64165590-64165609 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | chr1_4:64166055-64166074 | Msa0177260:intron | 30.0% | |
| ! | TTTGCTATAAAGTAGTTTGG+TGG | - | chr1_4:64166210-64166229 | None:intergenic | 30.0% |
| TATCAGTTAAATTGAGCTGA+TGG | - | chr1_4:64166317-64166336 | None:intergenic | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | chr1_4:64166391-64166410 | None:intergenic | 30.0% | |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | chr1_4:64166463-64166482 | None:intergenic | 30.0% |
| TCATTTGAATCAACAACTGA+TGG | - | chr1_4:64166556-64166575 | None:intergenic | 30.0% | |
| AATGAAATCAAAGATGACTC+AGG | + | chr1_4:64166571-64166590 | Msa0177260:CDS | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | chr1_4:64166792-64166811 | None:intergenic | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | chr1_4:64166793-64166812 | None:intergenic | 30.0% | |
| AGATGTAAGATTCCATTGAA+AGG | - | chr1_4:64166794-64166813 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | chr1_4:64166951-64166970 | Msa0177260:CDS | 30.0% |
| TGGAAATTTAAGCATGTGTT+TGG | + | chr1_4:64167051-64167070 | Msa0177260:three_prime_UTR | 30.0% | |
| TTGGTGAAATATGAAAACCT+GGG | - | chr1_4:64165444-64165463 | None:intergenic | 30.0% | |
| TACCTATGATTAAGATCGAA+CGG | - | chr1_4:64165590-64165609 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | chr1_4:64166055-64166074 | Msa0177260:intron | 30.0% | |
| ! | TTTGCTATAAAGTAGTTTGG+TGG | - | chr1_4:64166210-64166229 | None:intergenic | 30.0% |
| TATCAGTTAAATTGAGCTGA+TGG | - | chr1_4:64166317-64166336 | None:intergenic | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | chr1_4:64166391-64166410 | None:intergenic | 30.0% | |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | chr1_4:64166463-64166482 | None:intergenic | 30.0% |
| TCATTTGAATCAACAACTGA+TGG | - | chr1_4:64166556-64166575 | None:intergenic | 30.0% | |
| AATGAAATCAAAGATGACTC+AGG | + | chr1_4:64166571-64166590 | Msa0177260:CDS | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | chr1_4:64166792-64166811 | None:intergenic | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | chr1_4:64166793-64166812 | None:intergenic | 30.0% | |
| AGATGTAAGATTCCATTGAA+AGG | - | chr1_4:64166794-64166813 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | chr1_4:64166951-64166970 | Msa0177260:CDS | 30.0% |
| TGGAAATTTAAGCATGTGTT+TGG | + | chr1_4:64167051-64167070 | Msa0177260:three_prime_UTR | 30.0% | |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | chr1_4:64165445-64165464 | None:intergenic | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | chr1_4:64165531-64165550 | Msa0177260:intron | 35.0% |
| AACCGTTCGATCTTAATCAT+AGG | + | chr1_4:64165585-64165604 | Msa0177260:intron | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | chr1_4:64166054-64166073 | Msa0177260:intron | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | chr1_4:64166078-64166097 | Msa0177260:intron | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | chr1_4:64166079-64166098 | Msa0177260:intron | 35.0% | |
| ! | CTATAAAGTAGTTTGGTGGT+GGG | - | chr1_4:64166206-64166225 | None:intergenic | 35.0% |
| TATAGCAAAATTGAGAGGCT+AGG | + | chr1_4:64166221-64166240 | Msa0177260:intron | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | chr1_4:64166261-64166280 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1_4:64166518-64166537 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1_4:64166525-64166544 | Msa0177260:CDS | 35.0% | |
| CAAAGATGACTCAGGAAAAA+CGG | + | chr1_4:64166579-64166598 | Msa0177260:CDS | 35.0% | |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | chr1_4:64166652-64166671 | Msa0177260:CDS | 35.0% |
| GACCTGAAATCTTGAAAACT+TGG | - | chr1_4:64166657-64166676 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | chr1_4:64166721-64166740 | None:intergenic | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | chr1_4:64166720-64166739 | Msa0177260:CDS | 35.0% | |
| !! | GGACTTTTACAATCTAGAGT+TGG | + | chr1_4:64166741-64166760 | Msa0177260:CDS | 35.0% |
| AGAGCATGTCAAATGAATTC+AGG | - | chr1_4:64166825-64166844 | None:intergenic | 35.0% | |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | chr1_4:64166838-64166857 | Msa0177260:intron | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | chr1_4:64166839-64166858 | Msa0177260:intron | 35.0% |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | chr1_4:64165445-64165464 | None:intergenic | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | chr1_4:64165531-64165550 | Msa0177260:intron | 35.0% |
| AACCGTTCGATCTTAATCAT+AGG | + | chr1_4:64165585-64165604 | Msa0177260:intron | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | chr1_4:64166054-64166073 | Msa0177260:intron | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | chr1_4:64166078-64166097 | Msa0177260:intron | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | chr1_4:64166079-64166098 | Msa0177260:intron | 35.0% | |
| ! | CTATAAAGTAGTTTGGTGGT+GGG | - | chr1_4:64166206-64166225 | None:intergenic | 35.0% |
| TATAGCAAAATTGAGAGGCT+AGG | + | chr1_4:64166221-64166240 | Msa0177260:intron | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | chr1_4:64166261-64166280 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1_4:64166518-64166537 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1_4:64166525-64166544 | Msa0177260:CDS | 35.0% | |
| CAAAGATGACTCAGGAAAAA+CGG | + | chr1_4:64166579-64166598 | Msa0177260:CDS | 35.0% | |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | chr1_4:64166652-64166671 | Msa0177260:CDS | 35.0% |
| GACCTGAAATCTTGAAAACT+TGG | - | chr1_4:64166657-64166676 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | chr1_4:64166721-64166740 | None:intergenic | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | chr1_4:64166720-64166739 | Msa0177260:CDS | 35.0% | |
| !! | GGACTTTTACAATCTAGAGT+TGG | + | chr1_4:64166741-64166760 | Msa0177260:CDS | 35.0% |
| AGAGCATGTCAAATGAATTC+AGG | - | chr1_4:64166825-64166844 | None:intergenic | 35.0% | |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | chr1_4:64166838-64166857 | Msa0177260:intron | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | chr1_4:64166839-64166858 | Msa0177260:intron | 35.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | chr1_4:64165408-64165427 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | chr1_4:64165409-64165428 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | chr1_4:64165410-64165429 | None:intergenic | 40.0% |
| TGAAAACCTGGGAATTCCTT+GGG | - | chr1_4:64165433-64165452 | None:intergenic | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1_4:64165434-64165453 | None:intergenic | 40.0% | |
| CAACCCAAACAGTGTAAACT+TGG | - | chr1_4:64166085-64166104 | None:intergenic | 40.0% | |
| ! | ATCTTGAGATGAAGAGCACA+AGG | + | chr1_4:64166106-64166125 | Msa0177260:intron | 40.0% |
| GGGTGAATGCCAAGATAATA+GGG | - | chr1_4:64166186-64166205 | None:intergenic | 40.0% | |
| TGGGTGAATGCCAAGATAAT+AGG | - | chr1_4:64166187-64166206 | None:intergenic | 40.0% | |
| ! | GCTATAAAGTAGTTTGGTGG+TGG | - | chr1_4:64166207-64166226 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1_4:64166520-64166539 | Msa0177260:CDS | 40.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | chr1_4:64165408-64165427 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | chr1_4:64165409-64165428 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | chr1_4:64165410-64165429 | None:intergenic | 40.0% |
| TGAAAACCTGGGAATTCCTT+GGG | - | chr1_4:64165433-64165452 | None:intergenic | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1_4:64165434-64165453 | None:intergenic | 40.0% | |
| CAACCCAAACAGTGTAAACT+TGG | - | chr1_4:64166085-64166104 | None:intergenic | 40.0% | |
| ! | ATCTTGAGATGAAGAGCACA+AGG | + | chr1_4:64166106-64166125 | Msa0177260:intron | 40.0% |
| GGGTGAATGCCAAGATAATA+GGG | - | chr1_4:64166186-64166205 | None:intergenic | 40.0% | |
| TGGGTGAATGCCAAGATAAT+AGG | - | chr1_4:64166187-64166206 | None:intergenic | 40.0% | |
| ! | GCTATAAAGTAGTTTGGTGG+TGG | - | chr1_4:64166207-64166226 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1_4:64166520-64166539 | Msa0177260:CDS | 40.0% |
| CGTGAAGGTGGTGACAATTA+AGG | + | chr1_4:64165305-64165324 | Msa0177260:CDS | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | chr1_4:64165347-64165366 | Msa0177260:CDS | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | chr1_4:64166224-64166243 | Msa0177260:intron | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | chr1_4:64166232-64166251 | Msa0177260:intron | 45.0% | |
| CAAATGTGACTCAGTGCCTT+GGG | + | chr1_4:64166491-64166510 | Msa0177260:CDS | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1_4:64166512-64166531 | Msa0177260:CDS | 45.0% |
| AAAACGGTCGTTAAGTCGTG+CGG | + | chr1_4:64166595-64166614 | Msa0177260:CDS | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | chr1_4:64166644-64166663 | None:intergenic | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | chr1_4:64166679-64166698 | None:intergenic | 45.0% | |
| AAATTCGTCAAGCTTCACCG+CGG | + | chr1_4:64166679-64166698 | Msa0177260:CDS | 45.0% | |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | chr1_4:64166779-64166798 | Msa0177260:CDS | 45.0% |
| CGTGAAGGTGGTGACAATTA+AGG | + | chr1_4:64165305-64165324 | Msa0177260:CDS | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | chr1_4:64165347-64165366 | Msa0177260:CDS | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | chr1_4:64166224-64166243 | Msa0177260:intron | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | chr1_4:64166232-64166251 | Msa0177260:intron | 45.0% | |
| CAAATGTGACTCAGTGCCTT+GGG | + | chr1_4:64166491-64166510 | Msa0177260:CDS | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1_4:64166512-64166531 | Msa0177260:CDS | 45.0% |
| AAAACGGTCGTTAAGTCGTG+CGG | + | chr1_4:64166595-64166614 | Msa0177260:CDS | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | chr1_4:64166644-64166663 | None:intergenic | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | chr1_4:64166679-64166698 | None:intergenic | 45.0% | |
| AAATTCGTCAAGCTTCACCG+CGG | + | chr1_4:64166679-64166698 | Msa0177260:CDS | 45.0% | |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | chr1_4:64166779-64166798 | Msa0177260:CDS | 45.0% |
| TAAGGCGATCGAAGCAACTC+CGG | + | chr1_4:64165323-64165342 | Msa0177260:CDS | 50.0% | |
| !! | CCGTAGTCTTTGAAGTTCGC+CGG | - | chr1_4:64165345-64165364 | None:intergenic | 50.0% |
| CCGGCGAACTTCAAAGACTA+CGG | + | chr1_4:64165342-64165361 | Msa0177260:CDS | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | chr1_4:64165414-64165433 | Msa0177260:CDS | 50.0% | |
| ATCTCACCCAAGGAATTCCC+AGG | + | chr1_4:64165424-64165443 | Msa0177260:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+TGG | + | chr1_4:64166490-64166509 | Msa0177260:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1_4:64166510-64166529 | None:intergenic | 50.0% | |
| TTATGTTCCTCCCACCGTTG+AGG | + | chr1_4:64166627-64166646 | Msa0177260:CDS | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | chr1_4:64166680-64166699 | None:intergenic | 50.0% | |
| TAAGGCGATCGAAGCAACTC+CGG | + | chr1_4:64165323-64165342 | Msa0177260:CDS | 50.0% | |
| !! | CCGTAGTCTTTGAAGTTCGC+CGG | - | chr1_4:64165345-64165364 | None:intergenic | 50.0% |
| CCGGCGAACTTCAAAGACTA+CGG | + | chr1_4:64165342-64165361 | Msa0177260:CDS | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | chr1_4:64165414-64165433 | Msa0177260:CDS | 50.0% | |
| ATCTCACCCAAGGAATTCCC+AGG | + | chr1_4:64165424-64165443 | Msa0177260:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+TGG | + | chr1_4:64166490-64166509 | Msa0177260:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1_4:64166510-64166529 | None:intergenic | 50.0% | |
| TTATGTTCCTCCCACCGTTG+AGG | + | chr1_4:64166627-64166646 | Msa0177260:CDS | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | chr1_4:64166680-64166699 | None:intergenic | 50.0% | |
| AAACCCAGGCTGTCTGGTGA+AGG | - | chr1_4:64165381-64165400 | None:intergenic | 55.0% | |
| ! | TCACCAGACAGCCTGGGTTT+TGG | + | chr1_4:64165381-64165400 | Msa0177260:CDS | 55.0% |
| CATCATGGGGACCAAAACCC+AGG | - | chr1_4:64165395-64165414 | None:intergenic | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1_4:64166499-64166518 | Msa0177260:CDS | 55.0% | |
| ACTTGGACGTCCTCAACGGT+GGG | - | chr1_4:64166640-64166659 | None:intergenic | 55.0% | |
| AACTTGGACGTCCTCAACGG+TGG | - | chr1_4:64166641-64166660 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | chr1_4:64166686-64166705 | Msa0177260:CDS | 55.0% | |
| AAACCCAGGCTGTCTGGTGA+AGG | - | chr1_4:64165381-64165400 | None:intergenic | 55.0% | |
| ! | TCACCAGACAGCCTGGGTTT+TGG | + | chr1_4:64165381-64165400 | Msa0177260:CDS | 55.0% |
| CATCATGGGGACCAAAACCC+AGG | - | chr1_4:64165395-64165414 | None:intergenic | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1_4:64166499-64166518 | Msa0177260:CDS | 55.0% | |
| ACTTGGACGTCCTCAACGGT+GGG | - | chr1_4:64166640-64166659 | None:intergenic | 55.0% | |
| AACTTGGACGTCCTCAACGG+TGG | - | chr1_4:64166641-64166660 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | chr1_4:64166686-64166705 | Msa0177260:CDS | 55.0% | |
| GAGCCTTCACCAGACAGCCT+GGG | + | chr1_4:64165375-64165394 | Msa0177260:CDS | 60.0% | |
| GGACCAAAACCCAGGCTGTC+TGG | - | chr1_4:64165387-64165406 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1_4:64166502-64166521 | Msa0177260:CDS | 60.0% | |
| ACGGTCGTTAAGTCGTGCGG+CGG | + | chr1_4:64166598-64166617 | Msa0177260:CDS | 60.0% | |
| GACCAGCATGCCATGTACCG+CGG | - | chr1_4:64166699-64166718 | None:intergenic | 60.0% | |
| GAGCCTTCACCAGACAGCCT+GGG | + | chr1_4:64165375-64165394 | Msa0177260:CDS | 60.0% | |
| GGACCAAAACCCAGGCTGTC+TGG | - | chr1_4:64165387-64165406 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1_4:64166502-64166521 | Msa0177260:CDS | 60.0% | |
| ACGGTCGTTAAGTCGTGCGG+CGG | + | chr1_4:64166598-64166617 | Msa0177260:CDS | 60.0% | |
| GACCAGCATGCCATGTACCG+CGG | - | chr1_4:64166699-64166718 | None:intergenic | 60.0% | |
| CGAGCCTTCACCAGACAGCC+TGG | + | chr1_4:64165374-64165393 | Msa0177260:CDS | 65.0% | |
| TGGACGTCCTCAACGGTGGG+AGG | - | chr1_4:64166637-64166656 | None:intergenic | 65.0% | |
| CACCGCGGTACATGGCATGC+TGG | + | chr1_4:64166694-64166713 | Msa0177260:CDS | 65.0% | |
| CGAGCCTTCACCAGACAGCC+TGG | + | chr1_4:64165374-64165393 | Msa0177260:CDS | 65.0% | |
| TGGACGTCCTCAACGGTGGG+AGG | - | chr1_4:64166637-64166656 | None:intergenic | 65.0% | |
| CACCGCGGTACATGGCATGC+TGG | + | chr1_4:64166694-64166713 | Msa0177260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 64165297 | 64167144 | 64165297 | ID=Msa0177260;Name=Msa0177260 |
| chr1_4 | mRNA | 64165297 | 64167144 | 64165297 | ID=Msa0177260-mRNA-1;Parent=Msa0177260;Name=Msa0177260-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.33|1|1|1|3|146|210 |
| chr1_4 | exon | 64165297 | 64165445 | 64165297 | ID=Msa0177260-mRNA-1:exon:20835;Parent=Msa0177260-mRNA-1 |
| chr1_4 | exon | 64166432 | 64166849 | 64166432 | ID=Msa0177260-mRNA-1:exon:20836;Parent=Msa0177260-mRNA-1 |
| chr1_4 | exon | 64166933 | 64167144 | 64166933 | ID=Msa0177260-mRNA-1:exon:20837;Parent=Msa0177260-mRNA-1 |
| chr1_4 | CDS | 64165297 | 64165445 | 64165297 | ID=Msa0177260-mRNA-1:cds;Parent=Msa0177260-mRNA-1 |
| chr1_4 | CDS | 64166432 | 64166849 | 64166432 | ID=Msa0177260-mRNA-1:cds;Parent=Msa0177260-mRNA-1 |
| chr1_4 | CDS | 64166933 | 64166998 | 64166933 | ID=Msa0177260-mRNA-1:cds;Parent=Msa0177260-mRNA-1 |
| chr1_4 | three_prime_UTR | 64166999 | 64167144 | 64166999 | ID=Msa0177260-mRNA-1:three_prime_utr;Parent=Msa0177260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
