Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371500 | XP_013461068.1 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.23e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371500 | sp|Q28GF5|TMM18_XENTR | 45.918 | 98 | 52 | 1 | 46 | 142 | 16 | 113 | 5.50e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371500 | I3T390 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 1.07e-113 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0371500 | 0.819940 | 8.917277e-53 | -8.615850e-47 |
| Msa0091610 | Msa0371500 | 0.805503 | 1.293434e-49 | -8.615850e-47 |
| Msa0115370 | Msa0371500 | 0.815549 | 8.734479e-52 | -8.615850e-47 |
| Msa0116380 | Msa0371500 | 0.829184 | 5.934025e-55 | -8.615850e-47 |
| Msa0123510 | Msa0371500 | 0.816430 | 5.551773e-52 | -8.615850e-47 |
| Msa0127850 | Msa0371500 | 0.821133 | 4.747025e-53 | -8.615850e-47 |
| Msa0136120 | Msa0371500 | 0.813404 | 2.604130e-51 | -8.615850e-47 |
| Msa0179030 | Msa0371500 | 0.814657 | 1.378174e-51 | -8.615850e-47 |
| Msa0202110 | Msa0371500 | 0.822348 | 2.484985e-53 | -8.615850e-47 |
| Msa0230520 | Msa0371500 | 0.808144 | 3.577824e-50 | -8.615850e-47 |
| Msa0371500 | Msa0385500 | 0.825006 | 5.930342e-54 | -8.615850e-47 |
| Msa0371500 | Msa0419720 | 0.874824 | 4.992549e-68 | -8.615850e-47 |
| Msa0371500 | Msa0423750 | 0.821253 | 4.454933e-53 | -8.615850e-47 |
| Msa0371500 | Msa0427860 | -0.806861 | 6.696771e-50 | -8.615850e-47 |
| Msa0371500 | Msa0474090 | -0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0371500 | Msa0484740 | 0.809413 | 1.915992e-50 | -8.615850e-47 |
| Msa0371500 | Msa0511770 | 0.866041 | 3.808192e-65 | -8.615850e-47 |
| Msa0371500 | Msa0534750 | 0.809628 | 1.722456e-50 | -8.615850e-47 |
| Msa0371500 | Msa0547990 | 0.832603 | 8.602918e-56 | -8.615850e-47 |
| Msa0371500 | Msa0633570 | 0.801983 | 6.959411e-49 | -8.615850e-47 |
| Msa0371500 | Msa0644030 | 0.828992 | 6.603176e-55 | -8.615850e-47 |
| Msa0371500 | Msa0666230 | 0.805214 | 1.487466e-49 | -8.615850e-47 |
| Msa0371500 | Msa0672100 | 0.810685 | 1.019507e-50 | -8.615850e-47 |
| Msa0371500 | Msa0673270 | 0.817679 | 2.909660e-52 | -8.615850e-47 |
| Msa0371500 | Msa0780930 | 0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa0371500 | Msa0808800 | 0.809575 | 1.768121e-50 | -8.615850e-47 |
| Msa0371500 | Msa0833190 | -0.802812 | 4.697338e-49 | -8.615850e-47 |
| Msa0371500 | Msa0892640 | 0.812671 | 3.770468e-51 | -8.615850e-47 |
| Msa0371500 | Msa0980540 | 0.800297 | 1.539903e-48 | -8.615850e-47 |
| Msa0371500 | Msa1039900 | 0.817855 | 2.655839e-52 | -8.615850e-47 |
| Msa0371500 | Msa1165780 | 0.811488 | 6.827109e-51 | -8.615850e-47 |
| Msa0371500 | Msa1175350 | 0.826483 | 2.646085e-54 | -8.615850e-47 |
| Msa0371500 | Msa1206650 | 0.805222 | 1.481157e-49 | -8.615850e-47 |
| Msa0371500 | Msa1208020 | 0.812363 | 4.402029e-51 | -8.615850e-47 |
| Msa0371500 | Msa1278900 | 0.805416 | 1.348857e-49 | -8.615850e-47 |
| Msa0371500 | Msa1307180 | 0.810206 | 1.293372e-50 | -8.615850e-47 |
| Msa0371500 | Msa1315890 | 0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0371500 | Msa1316360 | 0.807782 | 4.272820e-50 | -8.615850e-47 |
| Msa0371500 | Msa1331250 | 0.803108 | 4.079793e-49 | -8.615850e-47 |
| Msa0371500 | Msa1351540 | 0.815642 | 8.328463e-52 | -8.615850e-47 |
| Msa0371500 | Msa1362420 | 0.809440 | 1.889936e-50 | -8.615850e-47 |
| Msa0371500 | Msa1432480 | 0.837437 | 5.201367e-57 | -8.615850e-47 |
| Msa0241830 | Msa0371500 | 0.802862 | 4.586142e-49 | -8.615850e-47 |
| Msa0245580 | Msa0371500 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
| Msa0249580 | Msa0371500 | 0.803712 | 3.058417e-49 | -8.615850e-47 |
| Msa0257490 | Msa0371500 | 0.812149 | 4.901186e-51 | -8.615850e-47 |
| Msa0283420 | Msa0371500 | 0.802654 | 5.062278e-49 | -8.615850e-47 |
| Msa0296250 | Msa0371500 | 0.801938 | 7.110325e-49 | -8.615850e-47 |
| Msa0296790 | Msa0371500 | 0.817463 | 3.254893e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371500 | MtrunA17_Chr3g0118301 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.05e-117 | 328 |
| Msa0371500 | MtrunA17_Chr1g0192701 | 83.893 | 149 | 9 | 1 | 17 | 165 | 1 | 134 | 7.02e-80 | 233 |
| Msa0371500 | MtrunA17_Chr2g0312071 | 75.000 | 56 | 8 | 1 | 110 | 165 | 35 | 84 | 1.04e-21 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371500 | AT1G34350.1 | 71.166 | 163 | 47 | 0 | 3 | 165 | 1 | 163 | 2.15e-82 | 240 |
| Msa0371500 | AT1G34350.2 | 61.170 | 188 | 48 | 1 | 3 | 165 | 1 | 188 | 3.39e-76 | 226 |
Find 44 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGACTTAATAGTATTC+TGG | 0.230596 | 3_1:+69643010 | Msa0371500:CDS |
| TTCACTTTCTTTGCATTCTC+TGG | 0.282129 | 3_1:-69638363 | None:intergenic |
| CTGAAAGTTGGTATTCTTCC+TGG | 0.303474 | 3_1:-69639352 | None:intergenic |
| GTTTCAGGAACCTTGGCTAC+TGG | 0.315298 | 3_1:+69639284 | Msa0371500:intron |
| GTGCTGAAGTAGTCAATTTC+CGG | 0.316899 | 3_1:+69638386 | Msa0371500:five_prime_UTR |
| GTAATTAAAGAAACTTTGTT+TGG | 0.355871 | 3_1:-69643485 | None:intergenic |
| GAGTATTTATGTCAGTTCTT+TGG | 0.365618 | 3_1:+69643081 | Msa0371500:CDS |
| TTTATGTCAGTTCTTTGGTC+TGG | 0.387486 | 3_1:+69643086 | Msa0371500:CDS |
| GTTTCTTTCATGCTATTGAT+TGG | 0.393651 | 3_1:+69638550 | Msa0371500:CDS |
| TGCATTCGCTATGATAATCT+TGG | 0.397468 | 3_1:+69643118 | Msa0371500:CDS |
| TTTCAGGAACCTTGGCTACT+GGG | 0.415351 | 3_1:+69639285 | Msa0371500:intron |
| TATGTTACTTGATTGTTAAG+TGG | 0.415739 | 3_1:+69643281 | Msa0371500:CDS |
| CTGATGCATGGGAAAATTCT+TGG | 0.423972 | 3_1:-69643507 | None:intergenic |
| GAGAGACTTAATAGTATTCT+GGG | 0.439923 | 3_1:+69643011 | Msa0371500:CDS |
| TAATTAAAGAAACTTTGTTT+GGG | 0.447933 | 3_1:-69643484 | None:intergenic |
| AAAGAAGAATCTGGAATTGA+AGG | 0.454636 | 3_1:+69638323 | None:intergenic |
| CTTTCATGCTATTGATTGGA+AGG | 0.458422 | 3_1:+69638554 | Msa0371500:CDS |
| AGAAAGACAACTCATTTGTA+TGG | 0.466408 | 3_1:-69643453 | None:intergenic |
| GCGTTGCGATCTGCAGTTAC+CGG | 0.480536 | 3_1:-69638405 | None:intergenic |
| AATGCTACGTACACGTCAAA+AGG | 0.482328 | 3_1:-69639386 | None:intergenic |
| AGGAATAGTTGATCTATAGT+TGG | 0.488648 | 3_1:+69643350 | Msa0371500:exon |
| TTGTTAAGTAAGTGTTCTAA+TGG | 0.489799 | 3_1:+69643599 | Msa0371500:three_prime_UTR |
| CTTAACAATCAAGTAACATA+AGG | 0.491135 | 3_1:-69643278 | None:intergenic |
| TTCTTGCGATTATTGTCTCC+AGG | 0.499806 | 3_1:+69639334 | Msa0371500:CDS |
| GAACAAGCACATCTGAAAGT+TGG | 0.517575 | 3_1:-69639364 | None:intergenic |
| TTAAAGAAACTTTGTTTGGG+AGG | 0.520741 | 3_1:-69643481 | None:intergenic |
| CGATGAACTGAAATCTGCTA+TGG | 0.524498 | 3_1:+69638437 | Msa0371500:CDS |
| AACAGAATGAACTGATGCAT+GGG | 0.546519 | 3_1:-69643518 | None:intergenic |
| TTAAGTAAGTGTTCTAATGG+TGG | 0.564372 | 3_1:+69643602 | Msa0371500:three_prime_UTR |
| AAGGGCTGCTCGTAGTAAGC+AGG | 0.566315 | 3_1:+69643330 | Msa0371500:CDS |
| AAACAGAATGAACTGATGCA+TGG | 0.574496 | 3_1:-69643519 | None:intergenic |
| CTGAACTAAGACATCGTGCA+AGG | 0.578215 | 3_1:+69643311 | Msa0371500:CDS |
| GTTAACAATCCCAGTAGCCA+AGG | 0.583367 | 3_1:-69639294 | None:intergenic |
| ATCATAGCGAATGCAAGAAG+AGG | 0.591910 | 3_1:-69643110 | None:intergenic |
| CATGTGATTACAACACCTCA+TGG | 0.594268 | 3_1:-69643429 | None:intergenic |
| ACTGACATAAATACTCCACT+TGG | 0.602088 | 3_1:-69643074 | None:intergenic |
| TCGCAAGAAGCAATAGAACA+TGG | 0.614827 | 3_1:-69639320 | None:intergenic |
| TGAACTGAAATCTGCTATGG+AGG | 0.630102 | 3_1:+69638440 | Msa0371500:CDS |
| AGAGACTTAATAGTATTCTG+GGG | 0.632890 | 3_1:+69643012 | Msa0371500:CDS |
| TGAACTAAGACATCGTGCAA+GGG | 0.640138 | 3_1:+69643312 | Msa0371500:CDS |
| CATGAGGTGTTGTAATCACA+TGG | 0.649588 | 3_1:+69643430 | Msa0371500:three_prime_UTR |
| TTTCAGTTCATCGATCGACA+TGG | 0.652553 | 3_1:-69638427 | None:intergenic |
| CTAAGGAGTTCGTGTCCATG+AGG | 0.669396 | 3_1:+69643414 | Msa0371500:three_prime_UTR |
| GAGACTTAATAGTATTCTGG+GGG | 0.682914 | 3_1:+69643013 | Msa0371500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTATCTATTTATTT+TGG | + | chr3_1:69638691-69638710 | Msa0371500:intron | 10.0% |
| !!! | TTTGATATAATATGATTTTA+TGG | + | chr3_1:69639144-69639163 | Msa0371500:intron | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | + | chr3_1:69640317-69640336 | Msa0371500:intron | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | + | chr3_1:69640317-69640336 | Msa0371500:intron | 10.0% |
| !!! | AAATTTCTAAAATGAGAAAA+TGG | - | chr3_1:69639214-69639233 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTTTTTTGTTTC+AGG | + | chr3_1:69639269-69639288 | Msa0371500:intron | 15.0% |
| !! | ACATTCCATAAAATTAAAAA+AGG | - | chr3_1:69639412-69639431 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAATAAACTATAA+AGG | + | chr3_1:69639432-69639451 | Msa0371500:intron | 15.0% |
| !!! | TAAATATTTCTTTTAGAATG+AGG | + | chr3_1:69639858-69639877 | Msa0371500:intron | 15.0% |
| !! | TAAGATATAATTGAATTGAT+AGG | + | chr3_1:69640149-69640168 | Msa0371500:intron | 15.0% |
| !! | AAGATATAATTGAATTGATA+GGG | + | chr3_1:69640150-69640169 | Msa0371500:intron | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | + | chr3_1:69640316-69640335 | Msa0371500:intron | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | + | chr3_1:69640318-69640337 | Msa0371500:intron | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | + | chr3_1:69640429-69640448 | Msa0371500:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | + | chr3_1:69640430-69640449 | Msa0371500:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | - | chr3_1:69640461-69640480 | None:intergenic | 15.0% |
| !!! | TAGATATATTTTATTTGATG+AGG | - | chr3_1:69641037-69641056 | None:intergenic | 15.0% |
| !! | AATAAAATATATCTATCTTG+TGG | + | chr3_1:69641042-69641061 | Msa0371500:intron | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | + | chr3_1:69640316-69640335 | Msa0371500:intron | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | + | chr3_1:69640318-69640337 | Msa0371500:intron | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | + | chr3_1:69640429-69640448 | Msa0371500:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | + | chr3_1:69640430-69640449 | Msa0371500:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | - | chr3_1:69640461-69640480 | None:intergenic | 15.0% |
| !! | TCATATTGAATATTAACTAT+CGG | + | chr3_1:69643188-69643207 | Msa0371500:intron | 15.0% |
| !!! | TAATTAAAGAAACTTTGTTT+GGG | - | chr3_1:69643487-69643506 | None:intergenic | 15.0% |
| !! | AAAAATAAGTAAATCCAAAC+AGG | - | chr3_1:69638877-69638896 | None:intergenic | 20.0% |
| !!! | TTTATGGATCATATTACTTT+TGG | + | chr3_1:69639160-69639179 | Msa0371500:intron | 20.0% |
| !!! | GCATTCCTTTTTTAATTTTA+TGG | + | chr3_1:69639404-69639423 | Msa0371500:intron | 20.0% |
| !! | ATTATGTAGTCTATTCAATT+TGG | + | chr3_1:69639613-69639632 | Msa0371500:intron | 20.0% |
| !!! | TATTCAATTTGGTAACATTA+CGG | + | chr3_1:69639624-69639643 | Msa0371500:intron | 20.0% |
| !!! | TTCACTCTTTTGAAAATTTT+GGG | - | chr3_1:69639796-69639815 | None:intergenic | 20.0% |
| !!! | ATTCACTCTTTTGAAAATTT+TGG | - | chr3_1:69639797-69639816 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGAGTGAATATA+TGG | + | chr3_1:69639800-69639819 | Msa0371500:intron | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | + | chr3_1:69640290-69640309 | Msa0371500:intron | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | + | chr3_1:69640291-69640310 | Msa0371500:intron | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | - | chr3_1:69640462-69640481 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | + | chr3_1:69640463-69640482 | Msa0371500:intron | 20.0% |
| !! | AAAATAGAGAGATATAGATA+TGG | + | chr3_1:69640937-69640956 | Msa0371500:intron | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | + | chr3_1:69640290-69640309 | Msa0371500:intron | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | + | chr3_1:69640291-69640310 | Msa0371500:intron | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | - | chr3_1:69640462-69640481 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | + | chr3_1:69640463-69640482 | Msa0371500:intron | 20.0% |
| !! | GTAATTAAAGAAACTTTGTT+TGG | - | chr3_1:69643488-69643507 | None:intergenic | 20.0% |
| ! | CGAAGCAATAAAAAAGAATA+AGG | - | chr3_1:69638641-69638660 | None:intergenic | 25.0% |
| !! | TTTTATTGCTTCGTCAATTA+TGG | + | chr3_1:69638648-69638667 | Msa0371500:intron | 25.0% |
| ! | TTATGGAGTTTAATTGAATG+TGG | + | chr3_1:69638665-69638684 | Msa0371500:intron | 25.0% |
| !!! | TTGTATAAGTTGTTTTGCAT+AGG | + | chr3_1:69638953-69638972 | Msa0371500:intron | 25.0% |
| ! | AATGTAGAAAATTAAAGGCA+GGG | - | chr3_1:69639545-69639564 | None:intergenic | 25.0% |
| !!! | TGCCTTTAATTTTCTACATT+GGG | + | chr3_1:69639545-69639564 | Msa0371500:intron | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | + | chr3_1:69640246-69640265 | Msa0371500:intron | 25.0% |
| !!! | ATTTATTTGGCGTTTTAAAC+CGG | + | chr3_1:69640744-69640763 | Msa0371500:intron | 25.0% |
| !!! | GAACTTCATTTTTGTGAAAT+TGG | + | chr3_1:69641748-69641767 | Msa0371500:intron | 25.0% |
| ! | ATATTTCCTTCCTTAATCAA+TGG | + | chr3_1:69642079-69642098 | Msa0371500:intron | 25.0% |
| ! | TTGCAATAAAGAAATGAGAA+TGG | + | chr3_1:69642261-69642280 | Msa0371500:intron | 25.0% |
| ! | TGCAATAAAGAAATGAGAAT+GGG | + | chr3_1:69642262-69642281 | Msa0371500:intron | 25.0% |
| !! | TGTCATTATACTTCAAGTTA+TGG | + | chr3_1:69642410-69642429 | Msa0371500:intron | 25.0% |
| !! | GTCATTATACTTCAAGTTAT+GGG | + | chr3_1:69642411-69642430 | Msa0371500:intron | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | + | chr3_1:69640246-69640265 | Msa0371500:intron | 25.0% |
| ! | AGAAAGTTAAGCTACATTAT+TGG | - | chr3_1:69642954-69642973 | None:intergenic | 25.0% |
| ! | ATAATGTAGCTTAACTTTCT+TGG | + | chr3_1:69642954-69642973 | Msa0371500:intron | 25.0% |
| ! | CTTAACAATCAAGTAACATA+AGG | - | chr3_1:69643281-69643300 | None:intergenic | 25.0% |
| !! | TATGTTACTTGATTGTTAAG+TGG | + | chr3_1:69643281-69643300 | Msa0371500:CDS | 25.0% |
| !!! | GATTTTGATGGATTAAACTA+AGG | + | chr3_1:69643397-69643416 | Msa0371500:three_prime_UTR | 25.0% |
| ! | TTGTTAAGTAAGTGTTCTAA+TGG | + | chr3_1:69643599-69643618 | Msa0371500:three_prime_UTR | 25.0% |
| CCTAAAAAGTTATCTTTAGC+AGG | - | chr3_1:69638531-69638550 | None:intergenic | 30.0% | |
| ! | CCTGCTAAAGATAACTTTTT+AGG | + | chr3_1:69638528-69638547 | Msa0371500:CDS | 30.0% |
| GTTTCTTTCATGCTATTGAT+TGG | + | chr3_1:69638550-69638569 | Msa0371500:CDS | 30.0% | |
| ! | TGTCATGTTTTGTACTTGTT+TGG | + | chr3_1:69638758-69638777 | Msa0371500:intron | 30.0% |
| TTCGCTACTAAATTGAACTT+AGG | + | chr3_1:69638850-69638869 | Msa0371500:intron | 30.0% | |
| TCGCTACTAAATTGAACTTA+GGG | + | chr3_1:69638851-69638870 | Msa0371500:intron | 30.0% | |
| ACAAATAAATAAGCTTGTCG+AGG | - | chr3_1:69638937-69638956 | None:intergenic | 30.0% | |
| GACAATATTAGTAAGTTTGC+AGG | - | chr3_1:69639251-69639270 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGTTTCAGGAACCT+TGG | + | chr3_1:69639277-69639296 | Msa0371500:intron | 30.0% |
| !! | GTGATAAGTTGATTATCATG+GGG | - | chr3_1:69639523-69639542 | None:intergenic | 30.0% |
| !! | GGTGATAAGTTGATTATCAT+GGG | - | chr3_1:69639524-69639543 | None:intergenic | 30.0% |
| CAATGTAGAAAATTAAAGGC+AGG | - | chr3_1:69639546-69639565 | None:intergenic | 30.0% | |
| !! | CTGCCTTTAATTTTCTACAT+TGG | + | chr3_1:69639544-69639563 | Msa0371500:intron | 30.0% |
| CACCCAATGTAGAAAATTAA+AGG | - | chr3_1:69639550-69639569 | None:intergenic | 30.0% | |
| TCAAAGCATGATAGGATAAA+TGG | - | chr3_1:69639752-69639771 | None:intergenic | 30.0% | |
| TTTATCCTATCATGCTTTGA+TGG | + | chr3_1:69639752-69639771 | Msa0371500:intron | 30.0% | |
| AGTTGAAGTTTGAATACCTA+TGG | + | chr3_1:69640012-69640031 | Msa0371500:intron | 30.0% | |
| GATGTAAGCACTAAAAACAT+GGG | - | chr3_1:69640127-69640146 | None:intergenic | 30.0% | |
| AGATGTAAGCACTAAAAACA+TGG | - | chr3_1:69640128-69640147 | None:intergenic | 30.0% | |
| ATTGAATTGATAGGGAAGAA+TGG | + | chr3_1:69640158-69640177 | Msa0371500:intron | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | - | chr3_1:69640417-69640436 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | - | chr3_1:69640418-69640437 | None:intergenic | 30.0% | |
| AAACTCCATTTCTACCATAA+CGG | - | chr3_1:69640533-69640552 | None:intergenic | 30.0% | |
| ATTTCAAAACTTCCAGACAA+AGG | + | chr3_1:69641132-69641151 | Msa0371500:intron | 30.0% | |
| TAGGAAGAAGCTTTACATTA+GGG | - | chr3_1:69641300-69641319 | None:intergenic | 30.0% | |
| TTAGGAAGAAGCTTTACATT+AGG | - | chr3_1:69641301-69641320 | None:intergenic | 30.0% | |
| CGAATTATTAAGTACCTCAA+AGG | + | chr3_1:69641475-69641494 | Msa0371500:intron | 30.0% | |
| ! | TCAGGTTATTGTGTTTTCAT+TGG | + | chr3_1:69641601-69641620 | Msa0371500:intron | 30.0% |
| ! | TTTTTGTGAAATTGGTCCAA+TGG | + | chr3_1:69641756-69641775 | Msa0371500:intron | 30.0% |
| TCTTAGAGAGAAGATTATCA+CGG | + | chr3_1:69641870-69641889 | Msa0371500:intron | 30.0% | |
| TAGTAAAGATATCAGCAAGT+TGG | - | chr3_1:69641930-69641949 | None:intergenic | 30.0% | |
| AACTTACATATGTGACAAGA+TGG | + | chr3_1:69641972-69641991 | Msa0371500:intron | 30.0% | |
| AGGAAGGAAATATCTAAGAA+AGG | - | chr3_1:69642072-69642091 | None:intergenic | 30.0% | |
| ! | TCAATCACTTCCATTGATTA+AGG | - | chr3_1:69642092-69642111 | None:intergenic | 30.0% |
| GCAATAAAGAAATGAGAATG+GGG | + | chr3_1:69642263-69642282 | Msa0371500:intron | 30.0% | |
| ACAAACAGAGTATATGATCA+AGG | + | chr3_1:69642358-69642377 | Msa0371500:intron | 30.0% | |
| TTATGATATCATTCACCTTG+AGG | + | chr3_1:69642448-69642467 | Msa0371500:intron | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | - | chr3_1:69640417-69640436 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | - | chr3_1:69640418-69640437 | None:intergenic | 30.0% | |
| ! | TCATTTTCCATGCACATATT+TGG | + | chr3_1:69642859-69642878 | Msa0371500:intron | 30.0% |
| GAAAACATAAAACTGACATC+AGG | - | chr3_1:69642902-69642921 | None:intergenic | 30.0% | |
| TGAGAGACTTAATAGTATTC+TGG | + | chr3_1:69643010-69643029 | Msa0371500:CDS | 30.0% | |
| GAGAGACTTAATAGTATTCT+GGG | + | chr3_1:69643011-69643030 | Msa0371500:CDS | 30.0% | |
| AGAGACTTAATAGTATTCTG+GGG | + | chr3_1:69643012-69643031 | Msa0371500:CDS | 30.0% | |
| !!! | CAAAACTATTTTGATCCAAG+TGG | + | chr3_1:69643059-69643078 | Msa0371500:CDS | 30.0% |
| GAGTATTTATGTCAGTTCTT+TGG | + | chr3_1:69643081-69643100 | Msa0371500:CDS | 30.0% | |
| AGGAATAGTTGATCTATAGT+TGG | + | chr3_1:69643350-69643369 | Msa0371500:exon | 30.0% | |
| ! | TGAATGTAGTCAGATTTTGA+TGG | + | chr3_1:69643385-69643404 | Msa0371500:three_prime_UTR | 30.0% |
| AGAAAGACAACTCATTTGTA+TGG | - | chr3_1:69643456-69643475 | None:intergenic | 30.0% | |
| ! | TTAAAGAAACTTTGTTTGGG+AGG | - | chr3_1:69643484-69643503 | None:intergenic | 30.0% |
| TTAAGTAAGTGTTCTAATGG+TGG | + | chr3_1:69643602-69643621 | Msa0371500:three_prime_UTR | 30.0% | |
| TTCACTTTCTTTGCATTCTC+TGG | - | chr3_1:69638366-69638385 | None:intergenic | 35.0% | |
| ! | CTTTCATGCTATTGATTGGA+AGG | + | chr3_1:69638554-69638573 | Msa0371500:CDS | 35.0% |
| ATGCTAAAAGAGAAGGTTTG+CGG | - | chr3_1:69638606-69638625 | None:intergenic | 35.0% | |
| GAGAGAAATGCTAAAAGAGA+AGG | - | chr3_1:69638613-69638632 | None:intergenic | 35.0% | |
| TTTGTACTTGTTTGGACTGT+TGG | + | chr3_1:69638766-69638785 | Msa0371500:intron | 35.0% | |
| AACCACTGAGTTGTCAAATA+GGG | + | chr3_1:69639094-69639113 | Msa0371500:intron | 35.0% | |
| !! | TAAGTTGATTATCATGGGGA+AGG | - | chr3_1:69639519-69639538 | None:intergenic | 35.0% |
| !! | GGGTGATAAGTTGATTATCA+TGG | - | chr3_1:69639525-69639544 | None:intergenic | 35.0% |
| CAATCTTTATCCCACTAAGT+GGG | - | chr3_1:69639673-69639692 | None:intergenic | 35.0% | |
| TCAATCTTTATCCCACTAAG+TGG | - | chr3_1:69639674-69639693 | None:intergenic | 35.0% | |
| TTGCTGTAGTCTATTCTGTT+TGG | + | chr3_1:69639703-69639722 | Msa0371500:intron | 35.0% | |
| TATTATCTTAGCCACTGATC+AGG | + | chr3_1:69639891-69639910 | Msa0371500:intron | 35.0% | |
| CTAGTTCGATAGCTATTTAG+AGG | + | chr3_1:69639937-69639956 | Msa0371500:intron | 35.0% | |
| ! | CAGGAAAGAATACAGTGTTT+TGG | + | chr3_1:69639982-69640001 | Msa0371500:intron | 35.0% |
| GTATATCTTCTCTACACCAT+AGG | - | chr3_1:69640031-69640050 | None:intergenic | 35.0% | |
| CGTCTATCTGATACAAGTTT+AGG | - | chr3_1:69640085-69640104 | None:intergenic | 35.0% | |
| AATTGATAGGGAAGAATGGA+TGG | + | chr3_1:69640162-69640181 | Msa0371500:intron | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | + | chr3_1:69640294-69640313 | Msa0371500:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+AGG | + | chr3_1:69640326-69640345 | Msa0371500:intron | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | + | chr3_1:69640327-69640346 | Msa0371500:intron | 35.0% | |
| ! | ATCAGTTGGTTTCTATCAAC+TGG | + | chr3_1:69640477-69640496 | Msa0371500:intron | 35.0% |
| TGTTCTCGCTTGCATTTATT+TGG | + | chr3_1:69640731-69640750 | Msa0371500:intron | 35.0% | |
| AGGTTTGGAAGATGTAGAAA+TGG | + | chr3_1:69640912-69640931 | Msa0371500:intron | 35.0% | |
| GGTTTGGAAGATGTAGAAAT+GGG | + | chr3_1:69640913-69640932 | Msa0371500:intron | 35.0% | |
| GTTTGGAAGATGTAGAAATG+GGG | + | chr3_1:69640914-69640933 | Msa0371500:intron | 35.0% | |
| ATTACAGGTGATGACAATGA+GGG | + | chr3_1:69641085-69641104 | Msa0371500:intron | 35.0% | |
| TGTAAAGCTTCTTCCTAATC+AGG | + | chr3_1:69641303-69641322 | Msa0371500:intron | 35.0% | |
| GTAAAGCTTCTTCCTAATCA+GGG | + | chr3_1:69641304-69641323 | Msa0371500:intron | 35.0% | |
| TAAAGCTTCTTCCTAATCAG+GGG | + | chr3_1:69641305-69641324 | Msa0371500:intron | 35.0% | |
| TTGGATATTCAGATGCTGAT+TGG | + | chr3_1:69641548-69641567 | Msa0371500:intron | 35.0% | |
| ! | TGGATATTCAGATGCTGATT+GGG | + | chr3_1:69641549-69641568 | Msa0371500:intron | 35.0% |
| ! | GGTTATTGTGTTTTCATTGG+TGG | + | chr3_1:69641604-69641623 | Msa0371500:intron | 35.0% |
| TTGGTGGAAATTTGATCTCA+TGG | + | chr3_1:69641620-69641639 | Msa0371500:intron | 35.0% | |
| TTATCACACACAAGTTCCAT+TGG | - | chr3_1:69641775-69641794 | None:intergenic | 35.0% | |
| CTTAGAGAGAAGATTATCAC+GGG | + | chr3_1:69641871-69641890 | Msa0371500:intron | 35.0% | |
| TCACATATGTAAGTTATCCG+AGG | - | chr3_1:69641967-69641986 | None:intergenic | 35.0% | |
| ! | TCACTTCCATTGATTAAGGA+AGG | - | chr3_1:69642088-69642107 | None:intergenic | 35.0% |
| GTGAATAGGCAACCATATAT+AGG | - | chr3_1:69642125-69642144 | None:intergenic | 35.0% | |
| TATTCTCTGTACAGAATGTG+AGG | - | chr3_1:69642147-69642166 | None:intergenic | 35.0% | |
| CACAATCATGACATGCATAT+GGG | - | chr3_1:69642200-69642219 | None:intergenic | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | + | chr3_1:69640294-69640313 | Msa0371500:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+AGG | + | chr3_1:69640326-69640345 | Msa0371500:intron | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | + | chr3_1:69640327-69640346 | Msa0371500:intron | 35.0% | |
| TTTCTATCAGAGTGGAACTT+TGG | + | chr3_1:69642783-69642802 | Msa0371500:intron | 35.0% | |
| GTATACACCAAATATGTGCA+TGG | - | chr3_1:69642869-69642888 | None:intergenic | 35.0% | |
| !! | TCTTGGAAATTGTTTTGCAG+TGG | + | chr3_1:69642971-69642990 | Msa0371500:intron | 35.0% |
| GAGACTTAATAGTATTCTGG+GGG | + | chr3_1:69643013-69643032 | Msa0371500:CDS | 35.0% | |
| ACTGACATAAATACTCCACT+TGG | - | chr3_1:69643077-69643096 | None:intergenic | 35.0% | |
| TTTATGTCAGTTCTTTGGTC+TGG | + | chr3_1:69643086-69643105 | Msa0371500:CDS | 35.0% | |
| TGCATTCGCTATGATAATCT+TGG | + | chr3_1:69643118-69643137 | Msa0371500:CDS | 35.0% | |
| TTCGCTATGATAATCTTGGT+TGG | + | chr3_1:69643122-69643141 | Msa0371500:intron | 35.0% | |
| CATAATGGTTGTGACATAAG+GGG | - | chr3_1:69643153-69643172 | None:intergenic | 35.0% | |
| CCATAATGGTTGTGACATAA+GGG | - | chr3_1:69643154-69643173 | None:intergenic | 35.0% | |
| ACCATAATGGTTGTGACATA+AGG | - | chr3_1:69643155-69643174 | None:intergenic | 35.0% | |
| AACAGAATGAACTGATGCAT+GGG | - | chr3_1:69643521-69643540 | None:intergenic | 35.0% | |
| AAACAGAATGAACTGATGCA+TGG | - | chr3_1:69643522-69643541 | None:intergenic | 35.0% | |
| TGTAACTCTTCCAAAAACGA+AGG | + | chr3_1:69643543-69643562 | Msa0371500:three_prime_UTR | 35.0% | |
| ! | TACAAGTGATCCTTCGTTTT+TGG | - | chr3_1:69643556-69643575 | None:intergenic | 35.0% |
| GTGCTGAAGTAGTCAATTTC+CGG | + | chr3_1:69638386-69638405 | Msa0371500:five_prime_UTR | 40.0% | |
| TTTCAGTTCATCGATCGACA+TGG | - | chr3_1:69638430-69638449 | None:intergenic | 40.0% | |
| CGATGAACTGAAATCTGCTA+TGG | + | chr3_1:69638437-69638456 | Msa0371500:CDS | 40.0% | |
| TGAACTGAAATCTGCTATGG+AGG | + | chr3_1:69638440-69638459 | Msa0371500:CDS | 40.0% | |
| AATTGAACTTAGGGCCTGTT+TGG | + | chr3_1:69638860-69638879 | Msa0371500:intron | 40.0% | |
| ! | GTATTAATCAGGGGCTTGTT+TGG | - | chr3_1:69638996-69639015 | None:intergenic | 40.0% |
| CGCGGATTTGTATTAATCAG+GGG | - | chr3_1:69639005-69639024 | None:intergenic | 40.0% | |
| CCGCGGATTTGTATTAATCA+GGG | - | chr3_1:69639006-69639025 | None:intergenic | 40.0% | |
| CCCTGATTAATACAAATCCG+CGG | + | chr3_1:69639003-69639022 | Msa0371500:intron | 40.0% | |
| ACCGCGGATTTGTATTAATC+AGG | - | chr3_1:69639007-69639026 | None:intergenic | 40.0% | |
| ! | CCTGGTTGGTACAAAAGTTT+AGG | - | chr3_1:69639073-69639092 | None:intergenic | 40.0% |
| ! | CCTAAACTTTTGTACCAACC+AGG | + | chr3_1:69639070-69639089 | Msa0371500:intron | 40.0% |
| CAACCACTGAGTTGTCAAAT+AGG | + | chr3_1:69639093-69639112 | Msa0371500:intron | 40.0% | |
| ACCACTGAGTTGTCAAATAG+GGG | + | chr3_1:69639095-69639114 | Msa0371500:intron | 40.0% | |
| TCGCAAGAAGCAATAGAACA+TGG | - | chr3_1:69639323-69639342 | None:intergenic | 40.0% | |
| TTCTTGCGATTATTGTCTCC+AGG | + | chr3_1:69639334-69639353 | Msa0371500:CDS | 40.0% | |
| !! | CTGAAAGTTGGTATTCTTCC+TGG | - | chr3_1:69639355-69639374 | None:intergenic | 40.0% |
| GAACAAGCACATCTGAAAGT+TGG | - | chr3_1:69639367-69639386 | None:intergenic | 40.0% | |
| AATGCTACGTACACGTCAAA+AGG | - | chr3_1:69639389-69639408 | None:intergenic | 40.0% | |
| CTTCAAACAGAAGTGAAGTG+AGG | - | chr3_1:69639490-69639509 | None:intergenic | 40.0% | |
| ACATTGGGTGAAATACTGAG+CGG | + | chr3_1:69639560-69639579 | Msa0371500:intron | 40.0% | |
| TGCAACCATCAAAGCATGAT+AGG | - | chr3_1:69639760-69639779 | None:intergenic | 40.0% | |
| GATAGCTATTTAGAGGAGAG+TGG | + | chr3_1:69639944-69639963 | Msa0371500:intron | 40.0% | |
| GTGGACAGGTTATAAATGAC+AGG | + | chr3_1:69639963-69639982 | Msa0371500:intron | 40.0% | |
| TAAGACGCAAGAATGCACAA+TGG | - | chr3_1:69640060-69640079 | None:intergenic | 40.0% | |
| AAGCACTAAAAACATGGGCA+TGG | - | chr3_1:69640122-69640141 | None:intergenic | 40.0% | |
| ! | TAGGGAAGAATGGATGGTTT+TGG | + | chr3_1:69640168-69640187 | Msa0371500:intron | 40.0% |
| ! | AGGGAAGAATGGATGGTTTT+GGG | + | chr3_1:69640169-69640188 | Msa0371500:intron | 40.0% |
| !!! | GAATGGATGGTTTTGGGTTT+TGG | + | chr3_1:69640175-69640194 | Msa0371500:intron | 40.0% |
| !! | TGGTATCAGAGCATTGATCT+TGG | + | chr3_1:69640497-69640516 | Msa0371500:intron | 40.0% |
| TTTCTACCATAACGGTACCA+CGG | - | chr3_1:69640525-69640544 | None:intergenic | 40.0% | |
| TGGTACCGTTATGGTAGAAA+TGG | + | chr3_1:69640525-69640544 | Msa0371500:intron | 40.0% | |
| ! | ATGGAGTTTCGAGTGTTTGA+TGG | + | chr3_1:69640544-69640563 | Msa0371500:intron | 40.0% |
| ATGGCAAAGAAGATGCATAC+TGG | + | chr3_1:69640563-69640582 | Msa0371500:intron | 40.0% | |
| TATGCCAACTAACCTGTTGA+TGG | - | chr3_1:69640711-69640730 | None:intergenic | 40.0% | |
| !! | GGCGTTTTAAACCGGAATAT+CGG | + | chr3_1:69640752-69640771 | Msa0371500:intron | 40.0% |
| !! | GCGTTTTAAACCGGAATATC+GGG | + | chr3_1:69640753-69640772 | Msa0371500:intron | 40.0% |
| TCCTCTTCTTCATCAGACAT+AGG | - | chr3_1:69640787-69640806 | None:intergenic | 40.0% | |
| AGAGGAACCTGAAACTGAAT+TGG | + | chr3_1:69640801-69640820 | Msa0371500:intron | 40.0% | |
| AACCTGAAACTGAATTGGAG+CGG | + | chr3_1:69640806-69640825 | Msa0371500:intron | 40.0% | |
| GATAGGAGAAGAGAAAGGTT+TGG | + | chr3_1:69640897-69640916 | Msa0371500:intron | 40.0% | |
| !! | AGCAAAGTACTGCAGCAATT+TGG | + | chr3_1:69640967-69640986 | Msa0371500:intron | 40.0% |
| !! | GCAAAGTACTGCAGCAATTT+GGG | + | chr3_1:69640968-69640987 | Msa0371500:intron | 40.0% |
| GTTGACGACATTGTGATTAC+AGG | + | chr3_1:69641070-69641089 | Msa0371500:intron | 40.0% | |
| GATTACAGGTGATGACAATG+AGG | + | chr3_1:69641084-69641103 | Msa0371500:intron | 40.0% | |
| AACTTCCAGACAAAGGACTT+AGG | + | chr3_1:69641139-69641158 | Msa0371500:intron | 40.0% | |
| ATGCCAAGAAAGTAACGAAG+AGG | - | chr3_1:69641166-69641185 | None:intergenic | 40.0% | |
| AGCAATACCTGACTTTGACT+GGG | - | chr3_1:69641197-69641216 | None:intergenic | 40.0% | |
| TAGCAATACCTGACTTTGAC+TGG | - | chr3_1:69641198-69641217 | None:intergenic | 40.0% | |
| ! | CAGGTATTGCTATCTCTCAA+AGG | + | chr3_1:69641206-69641225 | Msa0371500:intron | 40.0% |
| GAAGTATGCTCTTGATATCC+TGG | + | chr3_1:69641228-69641247 | Msa0371500:intron | 40.0% | |
| ! | CAAACCAGTTGATACTCCTA+TGG | + | chr3_1:69641273-69641292 | Msa0371500:intron | 40.0% |
| AGCTTTACATTAGGGTCCAT+AGG | - | chr3_1:69641292-69641311 | None:intergenic | 40.0% | |
| AAAGCTTCTTCCTAATCAGG+GGG | + | chr3_1:69641306-69641325 | Msa0371500:intron | 40.0% | |
| AGATATGTCAGGTCTAGTCA+TGG | - | chr3_1:69641389-69641408 | None:intergenic | 40.0% | |
| CTGACTGGAAAAGATATGTC+AGG | - | chr3_1:69641400-69641419 | None:intergenic | 40.0% | |
| ! | AACTGACTTACTACACTGAC+TGG | - | chr3_1:69641415-69641434 | None:intergenic | 40.0% |
| TTCGAATCACTGCATTCCAA+TGG | - | chr3_1:69641459-69641478 | None:intergenic | 40.0% | |
| AGAGGCAACACTGATATCAT+TGG | + | chr3_1:69641529-69641548 | Msa0371500:intron | 40.0% | |
| TGTTGTTGCTCGTTCAAGTA+CGG | + | chr3_1:69641660-69641679 | Msa0371500:intron | 40.0% | |
| ! | GTGGTTGAAGCATTTACTTC+AGG | + | chr3_1:69641726-69641745 | Msa0371500:intron | 40.0% |
| TTTGTCCTCTCATGAAAGAC+TGG | - | chr3_1:69641826-69641845 | None:intergenic | 40.0% | |
| AACCTCCTTTGTCAATTCCA+AGG | + | chr3_1:69641903-69641922 | Msa0371500:intron | 40.0% | |
| TTGGTCCTTGGAATTGACAA+AGG | - | chr3_1:69641911-69641930 | None:intergenic | 40.0% | |
| CTAAATCTCTACGAAGTCCT+CGG | + | chr3_1:69641947-69641966 | Msa0371500:intron | 40.0% | |
| AGGTGGTGCATATACATCAT+AGG | - | chr3_1:69642001-69642020 | None:intergenic | 40.0% | |
| ATGTATATGCACCACCTTGA+GGG | + | chr3_1:69642004-69642023 | Msa0371500:intron | 40.0% | |
| GAGAGACTCATGCCTATATA+TGG | + | chr3_1:69642110-69642129 | Msa0371500:intron | 40.0% | |
| GTACAGAATGTGAGGTGAAT+AGG | - | chr3_1:69642139-69642158 | None:intergenic | 40.0% | |
| CCACAATCATGACATGCATA+TGG | - | chr3_1:69642201-69642220 | None:intergenic | 40.0% | |
| CCATATGCATGTCATGATTG+TGG | + | chr3_1:69642198-69642217 | Msa0371500:intron | 40.0% | |
| GCATGTCATGATTGTGGAAA+TGG | + | chr3_1:69642204-69642223 | Msa0371500:intron | 40.0% | |
| CATGATTGTGGAAATGGAAC+AGG | + | chr3_1:69642210-69642229 | Msa0371500:intron | 40.0% | |
| AATGGAACAGGAGAGCAAAA+CGG | + | chr3_1:69642222-69642241 | Msa0371500:intron | 40.0% | |
| AGAGATAAGGGGAACTACTA+TGG | + | chr3_1:69642288-69642307 | Msa0371500:intron | 40.0% | |
| GAGATAAGGGGAACTACTAT+GGG | + | chr3_1:69642289-69642308 | Msa0371500:intron | 40.0% | |
| GATATCATAAGTGTCCACCT+GGG | - | chr3_1:69642438-69642457 | None:intergenic | 40.0% | |
| TGATATCATAAGTGTCCACC+TGG | - | chr3_1:69642439-69642458 | None:intergenic | 40.0% | |
| TATCATTCACCTTGAGGACA+AGG | + | chr3_1:69642454-69642473 | Msa0371500:intron | 40.0% | |
| AAAGATTCACCTTGTCCTCA+AGG | - | chr3_1:69642466-69642485 | None:intergenic | 40.0% | |
| TGAGGACAAGGTGAATCTTT+AGG | + | chr3_1:69642466-69642485 | Msa0371500:intron | 40.0% | |
| GAGGACAAGGTGAATCTTTA+GGG | + | chr3_1:69642467-69642486 | Msa0371500:intron | 40.0% | |
| AGGACAAGGTGAATCTTTAG+GGG | + | chr3_1:69642468-69642487 | Msa0371500:intron | 40.0% | |
| ! | TCAGTTGGTTTCTATCAGAG+TGG | + | chr3_1:69642775-69642794 | Msa0371500:intron | 40.0% |
| GTGTGCATCTTATCTAAACC+AGG | - | chr3_1:69642812-69642831 | None:intergenic | 40.0% | |
| CAGACACAAGAATGCACAAT+GGG | - | chr3_1:69642838-69642857 | None:intergenic | 40.0% | |
| ACAGACACAAGAATGCACAA+TGG | - | chr3_1:69642839-69642858 | None:intergenic | 40.0% | |
| ! | ATAGTATTCTGGGGGAAAAC+TGG | + | chr3_1:69643021-69643040 | Msa0371500:CDS | 40.0% |
| ATCATAGCGAATGCAAGAAG+AGG | - | chr3_1:69643113-69643132 | None:intergenic | 40.0% | |
| CCCTTATGTCACAACCATTA+TGG | + | chr3_1:69643151-69643170 | Msa0371500:intron | 40.0% | |
| TGTCACAACCATTATGGTGA+CGG | + | chr3_1:69643157-69643176 | Msa0371500:intron | 40.0% | |
| AAAGATGACCGTCACCATAA+TGG | - | chr3_1:69643168-69643187 | None:intergenic | 40.0% | |
| TGAACTAAGACATCGTGCAA+GGG | + | chr3_1:69643312-69643331 | Msa0371500:CDS | 40.0% | |
| CATGTGATTACAACACCTCA+TGG | - | chr3_1:69643432-69643451 | None:intergenic | 40.0% | |
| !! | CATGAGGTGTTGTAATCACA+TGG | + | chr3_1:69643430-69643449 | Msa0371500:three_prime_UTR | 40.0% |
| CTGATGCATGGGAAAATTCT+TGG | - | chr3_1:69643510-69643529 | None:intergenic | 40.0% | |
| GAAATTGGAGGGAGAAGAGT+AGG | - | chr3_1:69638582-69638601 | None:intergenic | 45.0% | |
| ! | ATCCGCGGTGTGTATCTTTT+TGG | + | chr3_1:69639018-69639037 | Msa0371500:intron | 45.0% |
| GTCCAAAAAGATACACACCG+CGG | - | chr3_1:69639023-69639042 | None:intergenic | 45.0% | |
| TTTCAGGAACCTTGGCTACT+GGG | + | chr3_1:69639285-69639304 | Msa0371500:intron | 45.0% | |
| GTTAACAATCCCAGTAGCCA+AGG | - | chr3_1:69639297-69639316 | None:intergenic | 45.0% | |
| AGCGGCGATAACGTGATATT+TGG | + | chr3_1:69639578-69639597 | Msa0371500:intron | 45.0% | |
| CTTTATCCCACTAAGTGGGT+CGG | - | chr3_1:69639669-69639688 | None:intergenic | 45.0% | |
| TATCTCCATGACCTGATCAG+TGG | - | chr3_1:69639905-69639924 | None:intergenic | 45.0% | |
| CTATTTAGAGGAGAGTGGAC+AGG | + | chr3_1:69639949-69639968 | Msa0371500:intron | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | + | chr3_1:69640363-69640382 | Msa0371500:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | + | chr3_1:69640364-69640383 | Msa0371500:intron | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | + | chr3_1:69640382-69640401 | Msa0371500:intron | 45.0% |
| GCAAAGAAGATGCATACTGG+TGG | + | chr3_1:69640566-69640585 | Msa0371500:intron | 45.0% | |
| AAAGCGAGATACACCAGATG+AGG | + | chr3_1:69640615-69640634 | Msa0371500:intron | 45.0% | |
| TCTGTCAGTTTCTCCTCATC+TGG | - | chr3_1:69640631-69640650 | None:intergenic | 45.0% | |
| ! | GATGCGTTGATGTTACTCAG+AGG | + | chr3_1:69640649-69640668 | Msa0371500:intron | 45.0% |
| GGCATGATATCCCGATATTC+CGG | - | chr3_1:69640766-69640785 | None:intergenic | 45.0% | |
| GCCTATGTCTGATGAAGAAG+AGG | + | chr3_1:69640783-69640802 | Msa0371500:intron | 45.0% | |
| AACCGCTCCAATTCAGTTTC+AGG | - | chr3_1:69640811-69640830 | None:intergenic | 45.0% | |
| TCAACCACAAGATAGTGACC+AGG | + | chr3_1:69640855-69640874 | Msa0371500:intron | 45.0% | |
| CAACCACAAGATAGTGACCA+GGG | + | chr3_1:69640856-69640875 | Msa0371500:intron | 45.0% | |
| TTTCCCTGGTCACTATCTTG+TGG | - | chr3_1:69640862-69640881 | None:intergenic | 45.0% | |
| ACCTTTCTCTTCTCCTATCG+CGG | - | chr3_1:69640896-69640915 | None:intergenic | 45.0% | |
| ! | ATTTGGGATGATCCGTTGTG+AGG | + | chr3_1:69640984-69641003 | Msa0371500:intron | 45.0% |
| ! | GGTCCTCTTCGTTACTTTCT+TGG | + | chr3_1:69641160-69641179 | Msa0371500:intron | 45.0% |
| GTATGCTCTTGATATCCTGG+AGG | + | chr3_1:69641231-69641250 | Msa0371500:intron | 45.0% | |
| ACTCTCCTTGTGACAACCAT+TGG | + | chr3_1:69641440-69641459 | Msa0371500:intron | 45.0% | |
| GCATTCCAATGGTTGTCACA+AGG | - | chr3_1:69641448-69641467 | None:intergenic | 45.0% | |
| TGAAAACAAGCCCCTTTCCA+GGG | - | chr3_1:69641504-69641523 | None:intergenic | 45.0% | |
| !! | GGGCTTGTTTTCACTGATAG+AGG | + | chr3_1:69641511-69641530 | Msa0371500:intron | 45.0% |
| ! | TATTCAGATGCTGATTGGGC+AGG | + | chr3_1:69641553-69641572 | Msa0371500:intron | 45.0% |
| CAGGAGATACTAGCGATAGA+CGG | + | chr3_1:69641572-69641591 | Msa0371500:intron | 45.0% | |
| ATGCCACATGTGAGCTATTG+TGG | + | chr3_1:69641707-69641726 | Msa0371500:intron | 45.0% | |
| CAACCACAATAGCTCACATG+TGG | - | chr3_1:69641713-69641732 | None:intergenic | 45.0% | |
| ! | ATGAGAGGTGTAAAGCTGAC+TGG | - | chr3_1:69641798-69641817 | None:intergenic | 45.0% |
| ! | GAAAGACTGGATTGGATGAG+AGG | - | chr3_1:69641813-69641832 | None:intergenic | 45.0% |
| CCTCTCATGAAAGACTGGAT+TGG | - | chr3_1:69641821-69641840 | None:intergenic | 45.0% | |
| CCAATCCAGTCTTTCATGAG+AGG | + | chr3_1:69641818-69641837 | Msa0371500:intron | 45.0% | |
| GTCCTTGGAATTGACAAAGG+AGG | - | chr3_1:69641908-69641927 | None:intergenic | 45.0% | |
| !! | GATATCAGCAAGTTGGTCCT+TGG | - | chr3_1:69641923-69641942 | None:intergenic | 45.0% |
| GATGTATATGCACCACCTTG+AGG | + | chr3_1:69642003-69642022 | Msa0371500:intron | 45.0% | |
| TGTATATGCACCACCTTGAG+GGG | + | chr3_1:69642005-69642024 | Msa0371500:intron | 45.0% | |
| TGAGAATGGGGTCAGAGATA+AGG | + | chr3_1:69642275-69642294 | Msa0371500:intron | 45.0% | |
| GAGAATGGGGTCAGAGATAA+GGG | + | chr3_1:69642276-69642295 | Msa0371500:intron | 45.0% | |
| AGAATGGGGTCAGAGATAAG+GGG | + | chr3_1:69642277-69642296 | Msa0371500:intron | 45.0% | |
| ! | TACTTCAAGTTATGGGACCC+AGG | + | chr3_1:69642418-69642437 | Msa0371500:intron | 45.0% |
| GGACAAGGTGAATCTTTAGG+GGG | + | chr3_1:69642469-69642488 | Msa0371500:intron | 45.0% | |
| ! | GACAAGGTGAATCTTTAGGG+GGG | + | chr3_1:69642470-69642489 | Msa0371500:intron | 45.0% |
| ! | ACAAGGTGAATCTTTAGGGG+GGG | + | chr3_1:69642471-69642490 | Msa0371500:intron | 45.0% |
| ATCTGAGGATTTGACTGGGA+AGG | + | chr3_1:69640363-69640382 | Msa0371500:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | + | chr3_1:69640364-69640383 | Msa0371500:intron | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | + | chr3_1:69640382-69640401 | Msa0371500:intron | 45.0% |
| AGAGTGGAACTTTGGATACC+TGG | + | chr3_1:69642791-69642810 | Msa0371500:intron | 45.0% | |
| !! | GGAAATTGTTTTGCAGTGGC+TGG | + | chr3_1:69642975-69642994 | Msa0371500:intron | 45.0% |
| CTGAACTAAGACATCGTGCA+AGG | + | chr3_1:69643311-69643330 | Msa0371500:CDS | 45.0% | |
| AGGTTTGCGGCGAAATTGGA+GGG | - | chr3_1:69638593-69638612 | None:intergenic | 50.0% | |
| AAGGTTTGCGGCGAAATTGG+AGG | - | chr3_1:69638594-69638613 | None:intergenic | 50.0% | |
| GAGAAGGTTTGCGGCGAAAT+TGG | - | chr3_1:69638597-69638616 | None:intergenic | 50.0% | |
| TTGACAACTCAGTGGTTGCC+TGG | - | chr3_1:69639091-69639110 | None:intergenic | 50.0% | |
| GCCCCTATTTGACAACTCAG+TGG | - | chr3_1:69639099-69639118 | None:intergenic | 50.0% | |
| GTTTCAGGAACCTTGGCTAC+TGG | + | chr3_1:69639284-69639303 | Msa0371500:intron | 50.0% | |
| ATGTAGCCGACCCACTTAGT+GGG | + | chr3_1:69639660-69639679 | Msa0371500:intron | 50.0% | |
| CTTAGCCACTGATCAGGTCA+TGG | + | chr3_1:69639897-69639916 | Msa0371500:intron | 50.0% | |
| GGGAGAGAAGGGAAGATTGA+GGG | + | chr3_1:69640338-69640357 | Msa0371500:intron | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | + | chr3_1:69640339-69640358 | Msa0371500:intron | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | + | chr3_1:69640359-69640378 | Msa0371500:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | + | chr3_1:69640365-69640384 | Msa0371500:intron | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | + | chr3_1:69640381-69640400 | Msa0371500:intron | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | - | chr3_1:69640391-69640410 | None:intergenic | 50.0% | |
| !! | GAGCATTGATCTTGGAACCG+TGG | + | chr3_1:69640505-69640524 | Msa0371500:intron | 50.0% |
| TTGGAACCGTGGTACCGTTA+TGG | + | chr3_1:69640516-69640535 | Msa0371500:intron | 50.0% | |
| GATTCCACCAGTGTGACCAT+TGG | - | chr3_1:69640684-69640703 | None:intergenic | 50.0% | |
| GACGCCATCAACAGGTTAGT+TGG | + | chr3_1:69640704-69640723 | Msa0371500:intron | 50.0% | |
| AATCCAAATCCCACCGCGAT+AGG | + | chr3_1:69640880-69640899 | Msa0371500:intron | 50.0% | |
| TTCTCTTCTCCTATCGCGGT+GGG | - | chr3_1:69640892-69640911 | None:intergenic | 50.0% | |
| TTTCTCTTCTCCTATCGCGG+TGG | - | chr3_1:69640893-69640912 | None:intergenic | 50.0% | |
| ACCGCGATAGGAGAAGAGAA+AGG | + | chr3_1:69640892-69640911 | Msa0371500:intron | 50.0% | |
| CAGAGTGATCTGCCTCACAA+CGG | - | chr3_1:69640999-69641018 | None:intergenic | 50.0% | |
| GAGGACCTAAGTCCTTTGTC+TGG | - | chr3_1:69641147-69641166 | None:intergenic | 50.0% | |
| GAAGTAGCCCAGTCAAAGTC+AGG | + | chr3_1:69641187-69641206 | Msa0371500:intron | 50.0% | |
| CTTGATATCCTGGAGGAGAC+AGG | + | chr3_1:69641238-69641257 | Msa0371500:intron | 50.0% | |
| !! | GGGTCCATAGGAGTATCAAC+TGG | - | chr3_1:69641280-69641299 | None:intergenic | 50.0% |
| GTATAAGGCTCCCCCTGATT+AGG | - | chr3_1:69641319-69641338 | None:intergenic | 50.0% | |
| TATCTGCCTGGGTCGGTATA+AGG | - | chr3_1:69641334-69641353 | None:intergenic | 50.0% | |
| ATACCGACCCAGGCAGATAT+CGG | + | chr3_1:69641335-69641354 | Msa0371500:intron | 50.0% | |
| CAAGTCTCCGATATCTGCCT+GGG | - | chr3_1:69641345-69641364 | None:intergenic | 50.0% | |
| ACAAGTCTCCGATATCTGCC+TGG | - | chr3_1:69641346-69641365 | None:intergenic | 50.0% | |
| GGCAGATATCGGAGACTTGT+TGG | + | chr3_1:69641346-69641365 | Msa0371500:intron | 50.0% | |
| AAGTACCTCAAAGGATCCCC+TGG | + | chr3_1:69641484-69641503 | Msa0371500:intron | 50.0% | |
| CTCAAAGGATCCCCTGGAAA+GGG | + | chr3_1:69641490-69641509 | Msa0371500:intron | 50.0% | |
| TCAAAGGATCCCCTGGAAAG+GGG | + | chr3_1:69641491-69641510 | Msa0371500:intron | 50.0% | |
| GAAAACAAGCCCCTTTCCAG+GGG | - | chr3_1:69641503-69641522 | None:intergenic | 50.0% | |
| GTGAAAACAAGCCCCTTTCC+AGG | - | chr3_1:69641505-69641524 | None:intergenic | 50.0% | |
| AGCGATAGACGGTCTACATC+AGG | + | chr3_1:69641583-69641602 | Msa0371500:intron | 50.0% | |
| TGTTGCTCGTTCAAGTACGG+AGG | + | chr3_1:69641663-69641682 | Msa0371500:intron | 50.0% | |
| GTATATGCACCACCTTGAGG+GGG | + | chr3_1:69642006-69642025 | Msa0371500:intron | 50.0% | |
| TATCTCAACACTCCCCCTCA+AGG | - | chr3_1:69642021-69642040 | None:intergenic | 50.0% | |
| ! | TTCAAGTTATGGGACCCAGG+TGG | + | chr3_1:69642421-69642440 | Msa0371500:intron | 50.0% |
| GGGAGAGAAGGGAAGATTGA+GGG | + | chr3_1:69640338-69640357 | Msa0371500:intron | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | + | chr3_1:69640339-69640358 | Msa0371500:intron | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | + | chr3_1:69640359-69640378 | Msa0371500:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | + | chr3_1:69640365-69640384 | Msa0371500:intron | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | + | chr3_1:69640381-69640400 | Msa0371500:intron | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | - | chr3_1:69640391-69640410 | None:intergenic | 50.0% | |
| CTAAGGAGTTCGTGTCCATG+AGG | + | chr3_1:69643414-69643433 | Msa0371500:three_prime_UTR | 50.0% | |
| GCGTTGCGATCTGCAGTTAC+CGG | - | chr3_1:69638408-69638427 | None:intergenic | 55.0% | |
| CAACTCAGTGGTTGCCTGGT+TGG | - | chr3_1:69639087-69639106 | None:intergenic | 55.0% | |
| CACTAAGTGGGTCGGCTACA+TGG | - | chr3_1:69639661-69639680 | None:intergenic | 55.0% | |
| CATGTAGCCGACCCACTTAG+TGG | + | chr3_1:69639659-69639678 | Msa0371500:intron | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+AGG | + | chr3_1:69640337-69640356 | Msa0371500:intron | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | + | chr3_1:69640348-69640367 | Msa0371500:intron | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | + | chr3_1:69640358-69640377 | Msa0371500:intron | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | + | chr3_1:69640374-69640393 | Msa0371500:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | + | chr3_1:69640385-69640404 | Msa0371500:intron | 55.0% |
| CTGGTGGCTGCTATGCATTG+AGG | + | chr3_1:69640582-69640601 | Msa0371500:intron | 55.0% | |
| TCAGAGGTCGTGCTCACCAA+TGG | + | chr3_1:69640665-69640684 | Msa0371500:intron | 55.0% | |
| GTGCTCACCAATGGTCACAC+TGG | + | chr3_1:69640674-69640693 | Msa0371500:intron | 55.0% | |
| CTCACCAATGGTCACACTGG+TGG | + | chr3_1:69640677-69640696 | Msa0371500:intron | 55.0% | |
| GTGGAATCGACGCCATCAAC+AGG | + | chr3_1:69640696-69640715 | Msa0371500:intron | 55.0% | |
| TTGGAGCGGTTGACGACTCA+AGG | + | chr3_1:69640820-69640839 | Msa0371500:intron | 55.0% | |
| CGGTGGGATTTGGATTTCCC+TGG | - | chr3_1:69640876-69640895 | None:intergenic | 55.0% | |
| TCTCCTATCGCGGTGGGATT+TGG | - | chr3_1:69640886-69640905 | None:intergenic | 55.0% | |
| CTGTAAGACCTGTCTCCTCC+AGG | - | chr3_1:69641249-69641268 | None:intergenic | 55.0% | |
| TCTCCGATATCTGCCTGGGT+CGG | - | chr3_1:69641341-69641360 | None:intergenic | 55.0% | |
| CCTTTCCAGGGGATCCTTTG+AGG | - | chr3_1:69641492-69641511 | None:intergenic | 55.0% | |
| CCTCAAAGGATCCCCTGGAA+AGG | + | chr3_1:69641489-69641508 | Msa0371500:intron | 55.0% | |
| CTCACATGTGGCATGAGCCA+TGG | - | chr3_1:69641701-69641720 | None:intergenic | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+AGG | + | chr3_1:69640337-69640356 | Msa0371500:intron | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | + | chr3_1:69640348-69640367 | Msa0371500:intron | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | + | chr3_1:69640358-69640377 | Msa0371500:intron | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | + | chr3_1:69640374-69640393 | Msa0371500:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | + | chr3_1:69640385-69640404 | Msa0371500:intron | 55.0% |
| AAGGGCTGCTCGTAGTAAGC+AGG | + | chr3_1:69643330-69643349 | Msa0371500:CDS | 55.0% | |
| !! | GGAGGCTGAGTATCGAGCCA+TGG | + | chr3_1:69641681-69641700 | Msa0371500:intron | 60.0% |
| CTCAACACTCCCCCTCAAGG+TGG | - | chr3_1:69642018-69642037 | None:intergenic | 60.0% | |
| ! | GGGGAGCCTTATACCGACCC+AGG | + | chr3_1:69641325-69641344 | Msa0371500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 69638335 | 69643670 | 69638335 | ID=Msa0371500;Name=Msa0371500 |
| chr3_1 | mRNA | 69638335 | 69643670 | 69638335 | ID=Msa0371500-mRNA-1;Parent=Msa0371500;Name=Msa0371500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=94|1|1|1|0.66|0.75|4|313|165 |
| chr3_1 | exon | 69638335 | 69638575 | 69638335 | ID=Msa0371500-mRNA-1:exon:14888;Parent=Msa0371500-mRNA-1 |
| chr3_1 | exon | 69639291 | 69639396 | 69639291 | ID=Msa0371500-mRNA-1:exon:14889;Parent=Msa0371500-mRNA-1 |
| chr3_1 | exon | 69642991 | 69643139 | 69642991 | ID=Msa0371500-mRNA-1:exon:14890;Parent=Msa0371500-mRNA-1 |
| chr3_1 | exon | 69643262 | 69643670 | 69643262 | ID=Msa0371500-mRNA-1:exon:14891;Parent=Msa0371500-mRNA-1 |
| chr3_1 | five_prime_UTR | 69638335 | 69638428 | 69638335 | ID=Msa0371500-mRNA-1:five_prime_utr;Parent=Msa0371500-mRNA-1 |
| chr3_1 | CDS | 69638429 | 69638575 | 69638429 | ID=Msa0371500-mRNA-1:cds;Parent=Msa0371500-mRNA-1 |
| chr3_1 | CDS | 69639291 | 69639396 | 69639291 | ID=Msa0371500-mRNA-1:cds;Parent=Msa0371500-mRNA-1 |
| chr3_1 | CDS | 69642991 | 69643139 | 69642991 | ID=Msa0371500-mRNA-1:cds;Parent=Msa0371500-mRNA-1 |
| chr3_1 | CDS | 69643262 | 69643357 | 69643262 | ID=Msa0371500-mRNA-1:cds;Parent=Msa0371500-mRNA-1 |
| chr3_1 | three_prime_UTR | 69643358 | 69643670 | 69643358 | ID=Msa0371500-mRNA-1:three_prime_utr;Parent=Msa0371500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
