Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834240 | XP_003611333.2 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834240 | sp|Q8W4K5|VAB_ARATH | 36.808 | 307 | 146 | 6 | 105 | 378 | 189 | 480 | 1.08e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834240 | G7JXD4 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 791 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005630 | Msa0834240 | 0.835797 | 1.361212e-56 | -8.615850e-47 |
| Msa0016440 | Msa0834240 | -0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0021980 | Msa0834240 | 0.835922 | 1.265114e-56 | -8.615850e-47 |
| Msa0025690 | Msa0834240 | 0.840545 | 8.151470e-58 | -8.615850e-47 |
| Msa0034100 | Msa0834240 | 0.808059 | 3.730576e-50 | -8.615850e-47 |
| Msa0041780 | Msa0834240 | 0.845279 | 4.482829e-59 | -8.615850e-47 |
| Msa0048410 | Msa0834240 | 0.801195 | 1.009790e-48 | -8.615850e-47 |
| Msa0050320 | Msa0834240 | 0.821946 | 3.080334e-53 | -8.615850e-47 |
| Msa0089540 | Msa0834240 | -0.825206 | 5.318218e-54 | -8.615850e-47 |
| Msa0090350 | Msa0834240 | 0.827512 | 1.501513e-54 | -8.615850e-47 |
| Msa0091220 | Msa0834240 | 0.811285 | 7.555503e-51 | -8.615850e-47 |
| Msa0096570 | Msa0834240 | 0.838968 | 2.097425e-57 | -8.615850e-47 |
| Msa0117300 | Msa0834240 | 0.826689 | 2.363443e-54 | -8.615850e-47 |
| Msa0608940 | Msa0834240 | 0.836136 | 1.116819e-56 | -8.615850e-47 |
| Msa0623360 | Msa0834240 | 0.847183 | 1.358586e-59 | -8.615850e-47 |
| Msa0630850 | Msa0834240 | 0.851456 | 8.772189e-61 | -8.615850e-47 |
| Msa0648200 | Msa0834240 | 0.819012 | 1.451960e-52 | -8.615850e-47 |
| Msa0649530 | Msa0834240 | 0.823873 | 1.095876e-53 | -8.615850e-47 |
| Msa0659020 | Msa0834240 | 0.834263 | 3.316101e-56 | -8.615850e-47 |
| Msa0681880 | Msa0834240 | 0.861661 | 8.768849e-64 | -8.615850e-47 |
| Msa0691140 | Msa0834240 | 0.800885 | 1.168083e-48 | -8.615850e-47 |
| Msa0691740 | Msa0834240 | 0.824299 | 8.700342e-54 | -8.615850e-47 |
| Msa0704780 | Msa0834240 | 0.832603 | 8.602918e-56 | -8.615850e-47 |
| Msa0733240 | Msa0834240 | 0.816442 | 5.519433e-52 | -8.615850e-47 |
| Msa0734190 | Msa0834240 | 0.819993 | 8.671895e-53 | -8.615850e-47 |
| Msa0756440 | Msa0834240 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0774360 | Msa0834240 | 0.806683 | 7.301072e-50 | -8.615850e-47 |
| Msa0775420 | Msa0834240 | 0.824081 | 9.791658e-54 | -8.615850e-47 |
| Msa0796460 | Msa0834240 | 0.843411 | 1.424999e-58 | -8.615850e-47 |
| Msa0797240 | Msa0834240 | 0.801290 | 9.655736e-49 | -8.615850e-47 |
| Msa0812020 | Msa0834240 | 0.814226 | 1.715835e-51 | -8.615850e-47 |
| Msa0812800 | Msa0834240 | 0.825481 | 4.578470e-54 | -8.615850e-47 |
| Msa0834200 | Msa0834240 | 0.961288 | 1.577036e-119 | -8.615850e-47 |
| Msa0834240 | Msa0835550 | 0.819017 | 1.448039e-52 | -8.615850e-47 |
| Msa0834240 | Msa0846300 | 0.837067 | 6.469438e-57 | -8.615850e-47 |
| Msa0834240 | Msa0852090 | 0.809493 | 1.841163e-50 | -8.615850e-47 |
| Msa0834240 | Msa0853150 | 0.812826 | 3.487497e-51 | -8.615850e-47 |
| Msa0834240 | Msa0861480 | 0.845276 | 4.493392e-59 | -8.615850e-47 |
| Msa0834240 | Msa0861560 | 0.813352 | 2.673062e-51 | -8.615850e-47 |
| Msa0834240 | Msa0863470 | 0.802992 | 4.311639e-49 | -8.615850e-47 |
| Msa0834240 | Msa0871310 | 0.852683 | 3.931159e-61 | -8.615850e-47 |
| Msa0834240 | Msa0984820 | 0.819949 | 8.879308e-53 | -8.615850e-47 |
| Msa0834240 | Msa0999590 | 0.808498 | 3.006634e-50 | -8.615850e-47 |
| Msa0834240 | Msa1026710 | -0.820145 | 8.008226e-53 | -8.615850e-47 |
| Msa0834240 | Msa1031530 | 0.823937 | 1.058121e-53 | -8.615850e-47 |
| Msa0834240 | Msa1038110 | 0.862919 | 3.601518e-64 | -8.615850e-47 |
| Msa0834240 | Msa1041550 | 0.826943 | 2.055272e-54 | -8.615850e-47 |
| Msa0834240 | Msa1071310 | 0.841836 | 3.731336e-58 | -8.615850e-47 |
| Msa0834240 | Msa1071460 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
| Msa0834240 | Msa1081530 | 0.828581 | 8.301071e-55 | -8.615850e-47 |
| Msa0834240 | Msa1093190 | 0.811157 | 8.057123e-51 | -8.615850e-47 |
| Msa0834240 | Msa1101610 | 0.848069 | 7.750229e-60 | -8.615850e-47 |
| Msa0834240 | Msa1129660 | 0.859183 | 4.934256e-63 | -8.615850e-47 |
| Msa0834240 | Msa1147600 | 0.801846 | 7.426462e-49 | -8.615850e-47 |
| Msa0834240 | Msa1164830 | 0.810295 | 1.237814e-50 | -8.615850e-47 |
| Msa0834240 | Msa1178980 | 0.806782 | 6.960414e-50 | -8.615850e-47 |
| Msa0834240 | Msa1182400 | 0.814434 | 1.543656e-51 | -8.615850e-47 |
| Msa0834240 | Msa1194170 | -0.833147 | 6.301525e-56 | -8.615850e-47 |
| Msa0834240 | Msa1199580 | 0.864135 | 1.511873e-64 | -8.615850e-47 |
| Msa0834240 | Msa1199750 | 0.803027 | 4.240245e-49 | -8.615850e-47 |
| Msa0834240 | Msa1207710 | 0.812498 | 4.112859e-51 | -8.615850e-47 |
| Msa0834240 | Msa1207760 | 0.809169 | 2.161437e-50 | -8.615850e-47 |
| Msa0834240 | Msa1216700 | 0.826167 | 3.147983e-54 | -8.615850e-47 |
| Msa0834240 | Msa1216900 | 0.821783 | 3.360102e-53 | -8.615850e-47 |
| Msa0834240 | Msa1229770 | 0.808266 | 3.370627e-50 | -8.615850e-47 |
| Msa0834240 | Msa1230190 | 0.833152 | 6.283354e-56 | -8.615850e-47 |
| Msa0834240 | Msa1243630 | 0.808055 | 3.737492e-50 | -8.615850e-47 |
| Msa0834240 | Msa1244220 | 0.807478 | 4.956434e-50 | -8.615850e-47 |
| Msa0834240 | Msa1257930 | 0.811840 | 5.725515e-51 | -8.615850e-47 |
| Msa0834240 | Msa1257960 | 0.812755 | 3.614264e-51 | -8.615850e-47 |
| Msa0834240 | Msa1262740 | 0.820074 | 8.311021e-53 | -8.615850e-47 |
| Msa0834240 | Msa1263610 | 0.849759 | 2.631507e-60 | -8.615850e-47 |
| Msa0834240 | Msa1272770 | 0.831374 | 1.731071e-55 | -8.615850e-47 |
| Msa0834240 | Msa1286950 | 0.812618 | 3.872284e-51 | -8.615850e-47 |
| Msa0834240 | Msa1298980 | 0.812552 | 4.003805e-51 | -8.615850e-47 |
| Msa0834240 | Msa1299280 | -0.820561 | 6.426026e-53 | -8.615850e-47 |
| Msa0834240 | Msa1307800 | 0.816430 | 5.551773e-52 | -8.615850e-47 |
| Msa0834240 | Msa1319230 | 0.811921 | 5.495596e-51 | -8.615850e-47 |
| Msa0834240 | Msa1325850 | 0.802953 | 4.392503e-49 | -8.615850e-47 |
| Msa0834240 | Msa1328630 | 0.861812 | 7.883573e-64 | -8.615850e-47 |
| Msa0834240 | Msa1328720 | 0.863150 | 3.056869e-64 | -8.615850e-47 |
| Msa0834240 | Msa1329660 | 0.827778 | 1.296507e-54 | -8.615850e-47 |
| Msa0834240 | Msa1334560 | -0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0834240 | Msa1339310 | 0.817977 | 2.492338e-52 | -8.615850e-47 |
| Msa0834240 | Msa1347610 | -0.834492 | 2.904669e-56 | -8.615850e-47 |
| Msa0834240 | Msa1353280 | 0.853263 | 2.681752e-61 | -8.615850e-47 |
| Msa0834240 | Msa1357720 | 0.820815 | 5.617817e-53 | -8.615850e-47 |
| Msa0834240 | Msa1368660 | 0.817137 | 3.854252e-52 | -8.615850e-47 |
| Msa0834240 | Msa1370630 | 0.804099 | 2.541395e-49 | -8.615850e-47 |
| Msa0834240 | Msa1379940 | -0.804733 | 1.874700e-49 | -8.615850e-47 |
| Msa0834240 | Msa1381720 | 0.825604 | 4.281092e-54 | -8.615850e-47 |
| Msa0834240 | Msa1401000 | 0.857626 | 1.435948e-62 | -8.615850e-47 |
| Msa0834240 | Msa1407200 | 0.810036 | 1.407224e-50 | -8.615850e-47 |
| Msa0834240 | Msa1409760 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0834240 | Msa1423930 | -0.803525 | 3.344731e-49 | -8.615850e-47 |
| Msa0834240 | Msa1427180 | 0.830895 | 2.269258e-55 | -8.615850e-47 |
| Msa0834240 | Msa1428560 | 0.823545 | 1.307516e-53 | -8.615850e-47 |
| Msa0834240 | Msa1431180 | 0.842840 | 2.022416e-58 | -8.615850e-47 |
| Msa0834240 | Msa1432250 | 0.832240 | 1.058057e-55 | -8.615850e-47 |
| Msa0834240 | Msa1433380 | 0.807376 | 5.209629e-50 | -8.615850e-47 |
| Msa0834240 | Msa1442070 | 0.848884 | 4.610734e-60 | -8.615850e-47 |
| Msa0834240 | Msa1445700 | 0.804242 | 2.373253e-49 | -8.615850e-47 |
| Msa0834240 | Msa1446220 | 0.824901 | 6.277029e-54 | -8.615850e-47 |
| Msa0834240 | Msa1450630 | 0.805138 | 1.542644e-49 | -8.615850e-47 |
| Msa0834240 | Msa1450850 | 0.830345 | 3.094805e-55 | -8.615850e-47 |
| Msa0834240 | Msa1459630 | 0.841132 | 5.720495e-58 | -8.615850e-47 |
| Msa0121480 | Msa0834240 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa0136180 | Msa0834240 | 0.818914 | 1.528478e-52 | -8.615850e-47 |
| Msa0137810 | Msa0834240 | 0.824318 | 8.611827e-54 | -8.615850e-47 |
| Msa0154720 | Msa0834240 | 0.821866 | 3.215269e-53 | -8.615850e-47 |
| Msa0160650 | Msa0834240 | 0.854518 | 1.166884e-61 | -8.615850e-47 |
| Msa0184030 | Msa0834240 | 0.818069 | 2.375888e-52 | -8.615850e-47 |
| Msa0184330 | Msa0834240 | 0.800544 | 1.371550e-48 | -8.615850e-47 |
| Msa0188500 | Msa0834240 | 0.826818 | 2.201228e-54 | -8.615850e-47 |
| Msa0223190 | Msa0834240 | 0.829864 | 4.055337e-55 | -8.615850e-47 |
| Msa0229750 | Msa0834240 | 0.837476 | 5.082918e-57 | -8.615850e-47 |
| Msa0237180 | Msa0834240 | -0.802182 | 6.333630e-49 | -8.615850e-47 |
| Msa0370350 | Msa0834240 | 0.804234 | 2.382465e-49 | -8.615850e-47 |
| Msa0372990 | Msa0834240 | 0.824883 | 6.341464e-54 | -8.615850e-47 |
| Msa0378620 | Msa0834240 | 0.823855 | 1.106355e-53 | -8.615850e-47 |
| Msa0378670 | Msa0834240 | 0.818519 | 1.879441e-52 | -8.615850e-47 |
| Msa0378700 | Msa0834240 | 0.807511 | 4.877769e-50 | -8.615850e-47 |
| Msa0380590 | Msa0834240 | -0.823427 | 1.393582e-53 | -8.615850e-47 |
| Msa0387740 | Msa0834240 | 0.834000 | 3.859983e-56 | -8.615850e-47 |
| Msa0401570 | Msa0834240 | 0.828349 | 9.447835e-55 | -8.615850e-47 |
| Msa0403720 | Msa0834240 | 0.813910 | 2.014618e-51 | -8.615850e-47 |
| Msa0408160 | Msa0834240 | 0.811834 | 5.743126e-51 | -8.615850e-47 |
| Msa0421390 | Msa0834240 | 0.824593 | 7.421910e-54 | -8.615850e-47 |
| Msa0425020 | Msa0834240 | 0.812107 | 5.007719e-51 | -8.615850e-47 |
| Msa0428330 | Msa0834240 | 0.808948 | 2.409829e-50 | -8.615850e-47 |
| Msa0431940 | Msa0834240 | 0.816243 | 6.115215e-52 | -8.615850e-47 |
| Msa0432260 | Msa0834240 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0436590 | Msa0834240 | 0.823087 | 1.673240e-53 | -8.615850e-47 |
| Msa0436600 | Msa0834240 | 0.826759 | 2.274341e-54 | -8.615850e-47 |
| Msa0436610 | Msa0834240 | 0.820895 | 5.384589e-53 | -8.615850e-47 |
| Msa0438680 | Msa0834240 | 0.830049 | 3.655069e-55 | -8.615850e-47 |
| Msa0476730 | Msa0834240 | 0.831589 | 1.532103e-55 | -8.615850e-47 |
| Msa0243820 | Msa0834240 | 0.827737 | 1.326479e-54 | -8.615850e-47 |
| Msa0256410 | Msa0834240 | 0.824515 | 7.740222e-54 | -8.615850e-47 |
| Msa0264240 | Msa0834240 | 0.839179 | 1.849208e-57 | -8.615850e-47 |
| Msa0264420 | Msa0834240 | 0.835378 | 1.737980e-56 | -8.615850e-47 |
| Msa0266380 | Msa0834240 | 0.830908 | 2.252460e-55 | -8.615850e-47 |
| Msa0302310 | Msa0834240 | 0.841159 | 5.628224e-58 | -8.615850e-47 |
| Msa0315660 | Msa0834240 | -0.800110 | 1.680408e-48 | -8.615850e-47 |
| Msa0339560 | Msa0834240 | 0.832219 | 1.070865e-55 | -8.615850e-47 |
| Msa0339670 | Msa0834240 | 0.836936 | 6.987574e-57 | -8.615850e-47 |
| Msa0341860 | Msa0834240 | 0.826720 | 2.323924e-54 | -8.615850e-47 |
| Msa0364010 | Msa0834240 | 0.833993 | 3.874931e-56 | -8.615850e-47 |
| Msa0484250 | Msa0834240 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0496460 | Msa0834240 | 0.807920 | 3.992613e-50 | -8.615850e-47 |
| Msa0496470 | Msa0834240 | 0.835556 | 1.566136e-56 | -8.615850e-47 |
| Msa0496570 | Msa0834240 | 0.820020 | 8.552238e-53 | -8.615850e-47 |
| Msa0500420 | Msa0834240 | -0.821812 | 3.308764e-53 | -8.615850e-47 |
| Msa0520810 | Msa0834240 | 0.834049 | 3.752202e-56 | -8.615850e-47 |
| Msa0521100 | Msa0834240 | 0.830031 | 3.691443e-55 | -8.615850e-47 |
| Msa0546370 | Msa0834240 | 0.834692 | 2.586806e-56 | -8.615850e-47 |
| Msa0555510 | Msa0834240 | 0.805238 | 1.470403e-49 | -8.615850e-47 |
| Msa0568290 | Msa0834240 | 0.831745 | 1.402132e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834240 | MtrunA17_Chr5g0399391 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 791 |
| Msa0834240 | MtrunA17_Chr3g0140081 | 34.456 | 386 | 171 | 10 | 55 | 378 | 1 | 366 | 1.98e-44 | 158 |
| Msa0834240 | MtrunA17_Chr4g0019631 | 44.578 | 166 | 85 | 3 | 181 | 345 | 134 | 293 | 3.63e-35 | 131 |
| Msa0834240 | MtrunA17_Chr7g0260211 | 36.877 | 301 | 149 | 6 | 113 | 381 | 175 | 466 | 1.35e-34 | 133 |
| Msa0834240 | MtrunA17_Chr1g0166381 | 38.793 | 232 | 120 | 4 | 169 | 378 | 226 | 457 | 3.87e-31 | 124 |
| Msa0834240 | MtrunA17_Chr1g0185201 | 38.819 | 237 | 122 | 5 | 169 | 382 | 241 | 477 | 7.18e-30 | 120 |
| Msa0834240 | MtrunA17_Chr1g0204831 | 41.410 | 227 | 111 | 5 | 172 | 378 | 220 | 444 | 5.61e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834240 | AT4G17350.1 | 55.774 | 407 | 158 | 11 | 7 | 397 | 2 | 402 | 2.94e-132 | 385 |
| Msa0834240 | AT5G47440.1 | 54.743 | 369 | 153 | 7 | 42 | 398 | 37 | 403 | 3.03e-118 | 350 |
| Msa0834240 | AT4G16670.1 | 51.913 | 366 | 153 | 10 | 53 | 397 | 63 | 426 | 2.67e-99 | 302 |
| Msa0834240 | AT4G16670.2 | 54.325 | 289 | 111 | 8 | 53 | 321 | 63 | 350 | 2.07e-78 | 246 |
| Msa0834240 | AT4G16670.3 | 49.686 | 318 | 110 | 9 | 53 | 321 | 63 | 379 | 7.55e-73 | 233 |
| Msa0834240 | AT3G22810.3 | 41.026 | 312 | 142 | 7 | 99 | 378 | 21 | 322 | 7.98e-57 | 189 |
| Msa0834240 | AT3G22810.1 | 41.026 | 312 | 142 | 7 | 99 | 378 | 159 | 460 | 8.70e-56 | 191 |
| Msa0834240 | AT4G14740.3 | 38.854 | 314 | 146 | 8 | 99 | 378 | 25 | 326 | 1.22e-48 | 168 |
| Msa0834240 | AT4G14740.1 | 38.854 | 314 | 146 | 8 | 99 | 378 | 164 | 465 | 1.30e-47 | 169 |
| Msa0834240 | AT4G14740.2 | 38.854 | 314 | 146 | 8 | 99 | 378 | 164 | 465 | 1.30e-47 | 169 |
| Msa0834240 | AT4G32780.1 | 34.492 | 374 | 188 | 10 | 48 | 378 | 35 | 394 | 1.80e-40 | 148 |
| Msa0834240 | AT4G32780.2 | 34.492 | 374 | 188 | 10 | 48 | 378 | 54 | 413 | 2.13e-40 | 149 |
| Msa0834240 | AT3G22810.2 | 39.179 | 268 | 116 | 6 | 99 | 336 | 159 | 409 | 1.67e-39 | 146 |
| Msa0834240 | AT5G43870.1 | 38.983 | 295 | 151 | 6 | 104 | 378 | 158 | 443 | 2.22e-39 | 146 |
| Msa0834240 | AT4G14740.4 | 38.824 | 255 | 112 | 6 | 99 | 321 | 164 | 406 | 2.71e-34 | 132 |
| Msa0834240 | AT3G63300.2 | 36.677 | 319 | 152 | 7 | 105 | 390 | 31 | 332 | 4.64e-28 | 113 |
| Msa0834240 | AT3G63300.1 | 36.808 | 307 | 146 | 6 | 105 | 378 | 189 | 480 | 1.10e-27 | 114 |
| Msa0834240 | AT5G43870.2 | 38.559 | 236 | 118 | 4 | 104 | 321 | 158 | 384 | 1.06e-24 | 104 |
Find 92 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAAGATCTCTATTT+TGG | 0.173414 | 5_4:+7256844 | Msa0834240:CDS |
| GTTGGTGGCTCAGGAATTTC+TGG | 0.231758 | 5_4:-7254456 | None:intergenic |
| TTGTTGCAGGTTACGGAAAA+AGG | 0.263078 | 5_4:+7256297 | Msa0834240:CDS |
| GAACCCATACCCACTTATTC+AGG | 0.282884 | 5_4:+7253972 | Msa0834240:five_prime_UTR |
| AACCAACGTTGTAACTAAAA+AGG | 0.288132 | 5_4:+7253904 | Msa0834240:five_prime_UTR |
| CCCATTCGACAATTAGTAAA+TGG | 0.310053 | 5_4:-7255522 | None:intergenic |
| GTACCAATTCTTGATTTGTT+TGG | 0.311174 | 5_4:+7257010 | Msa0834240:exon |
| GTAAATGGTATGAGCTTTCC+AGG | 0.322981 | 5_4:-7255507 | None:intergenic |
| AGTAAAGAAAGAATATTATA+AGG | 0.331718 | 5_4:-7254059 | None:intergenic |
| TAGTGACAATCACTCTAAAT+TGG | 0.333729 | 5_4:+7255701 | Msa0834240:CDS |
| AATTGTCGAATGGGTACTAT+TGG | 0.349296 | 5_4:+7255531 | Msa0834240:CDS |
| GAATGGGTACTATTGGAAAA+TGG | 0.359539 | 5_4:+7255538 | Msa0834240:CDS |
| TTCTGCAATTCCTCTATCAT+AGG | 0.360752 | 5_4:-7256208 | None:intergenic |
| ATCAGTTGAGAGTGAGATAT+AGG | 0.373042 | 5_4:-7254127 | None:intergenic |
| TTCACTACAGGAGCTGCTTA+TGG | 0.375538 | 5_4:+7257150 | Msa0834240:three_prime_UTR |
| GATTTCTGCGCCTCAATTAA+CGG | 0.383648 | 5_4:+7254605 | Msa0834240:CDS |
| GGGAGATTTGTTGCAGGTTA+CGG | 0.396348 | 5_4:+7256290 | Msa0834240:CDS |
| AGCATCTTATTGTGTTGAAA+TGG | 0.401646 | 5_4:+7255755 | Msa0834240:CDS |
| AATCCAAACAAATCAAGAAT+TGG | 0.410163 | 5_4:-7257013 | None:intergenic |
| TAATCCTGAATAAGTGGGTA+TGG | 0.411945 | 5_4:-7253976 | None:intergenic |
| CTTACTGCTGCAGCTGCAAC+AGG | 0.415178 | 5_4:+7255864 | Msa0834240:CDS |
| ACTGGTCCAAGCACATTGAT+TGG | 0.420396 | 5_4:+7253797 | Msa0834240:five_prime_UTR |
| CCATTTACTAATTGTCGAAT+GGG | 0.421708 | 5_4:+7255522 | Msa0834240:CDS |
| CTCTAAATTGGATGTTGCTA+TGG | 0.425258 | 5_4:+7255713 | Msa0834240:CDS |
| TCAAGAGGTGTTGGTGGCTC+AGG | 0.432946 | 5_4:-7254465 | None:intergenic |
| ATGCGAGGGAGATTTGTTGC+AGG | 0.435484 | 5_4:+7256284 | Msa0834240:CDS |
| TTACATCAACAAGAAATATC+AGG | 0.443700 | 5_4:+7256472 | Msa0834240:CDS |
| CATTCTGCACTATCAATTGC+CGG | 0.444928 | 5_4:+7255645 | Msa0834240:CDS |
| TGGAGTTCTTGTCTAGATCC+TGG | 0.446623 | 5_4:+7254493 | Msa0834240:CDS |
| TAAGACTCATGAAACATTGC+CGG | 0.447113 | 5_4:+7254578 | Msa0834240:CDS |
| ATGTTTCAACATTGGAGAAA+AGG | 0.448724 | 5_4:+7254357 | Msa0834240:CDS |
| TCCAAGCACATTGATTGGAT+TGG | 0.453538 | 5_4:+7253802 | Msa0834240:five_prime_UTR |
| AACATTGGAGAAAAGGATCA+TGG | 0.456120 | 5_4:+7254364 | Msa0834240:CDS |
| AAAACATAATCCTGAATAAG+TGG | 0.459503 | 5_4:-7253982 | None:intergenic |
| ACCAACACCTCTTGAGCCTA+TGG | 0.465547 | 5_4:+7254473 | Msa0834240:CDS |
| TTCTCTTCATCAAAATTACA+AGG | 0.467095 | 5_4:+7254160 | Msa0834240:five_prime_UTR |
| TGAGGCGCAGAAATCACTTC+CGG | 0.479341 | 5_4:-7254597 | None:intergenic |
| ACCATTTACTAATTGTCGAA+TGG | 0.480098 | 5_4:+7255521 | Msa0834240:CDS |
| CACTTACATCAGAAGCATCA+TGG | 0.482041 | 5_4:+7255564 | Msa0834240:CDS |
| GCCAATCCAATCAATGTGCT+TGG | 0.482126 | 5_4:-7253803 | None:intergenic |
| TTCTGCTTCTGAGATTTCAA+AGG | 0.483264 | 5_4:+7254521 | Msa0834240:CDS |
| AATCTCCCTCGCATGGAGAA+TGG | 0.495676 | 5_4:-7256275 | None:intergenic |
| AGCCTCCGCGTTGGCTTCTG+TGG | 0.496691 | 5_4:+7255671 | Msa0834240:CDS |
| TCACTACTACCACCGTACTT+TGG | 0.497870 | 5_4:+7253928 | Msa0834240:five_prime_UTR |
| ATGCAAACACTTCTGTTAAG+AGG | 0.499925 | 5_4:+7255589 | Msa0834240:CDS |
| ATAGGCTCAAGAGGTGTTGG+TGG | 0.501332 | 5_4:-7254471 | None:intergenic |
| AATAAGCTTACCGTTAATTG+AGG | 0.502971 | 5_4:-7254615 | None:intergenic |
| TCCATAGGCTCAAGAGGTGT+TGG | 0.507446 | 5_4:-7254474 | None:intergenic |
| AACATCTGACACTCAGAAGC+AGG | 0.508571 | 5_4:-7256243 | None:intergenic |
| TCTGCAATTCCTCTATCATA+GGG | 0.508987 | 5_4:-7256207 | None:intergenic |
| TGTATATGTCTCAATAGAGT+AGG | 0.509091 | 5_4:+7257037 | Msa0834240:three_prime_UTR |
| TCAATTAGTCCCTATGATAG+AGG | 0.509940 | 5_4:+7256198 | Msa0834240:CDS |
| TGTGAGTGGTTAGTAAATGA+TGG | 0.523669 | 5_4:+7254314 | Msa0834240:exon |
| AAAGTGATATGTTTCAACAT+TGG | 0.525411 | 5_4:+7254349 | Msa0834240:CDS |
| AATGAAATAATGTTCACTAC+AGG | 0.526509 | 5_4:+7257138 | Msa0834240:three_prime_UTR |
| CATGGCCATACAGAAAAGAA+AGG | 0.529161 | 5_4:+7256818 | Msa0834240:CDS |
| GATGGAATAGAATTTCTACT+TGG | 0.537636 | 5_4:+7256934 | Msa0834240:CDS |
| ATCAAAAGCAAGCACATTGG+AGG | 0.543010 | 5_4:+7256586 | Msa0834240:CDS |
| CTCAGAAGCAGAAAGACTCC+AGG | 0.544523 | 5_4:-7254511 | None:intergenic |
| GTTGAAATGGCAGAGTTAGC+AGG | 0.552664 | 5_4:+7255768 | Msa0834240:CDS |
| TGCAACAAATCTCCCTCGCA+TGG | 0.556607 | 5_4:-7256282 | None:intergenic |
| ACTTACATCAGAAGCATCAT+GGG | 0.561480 | 5_4:+7255565 | Msa0834240:CDS |
| AAGAAATGAAAACCAAAGTA+CGG | 0.564926 | 5_4:-7253940 | None:intergenic |
| AAGGATCATGGCAATGGCAA+GGG | 0.568181 | 5_4:+7254376 | Msa0834240:CDS |
| GCGGTCGATATTCAAACGCC+AGG | 0.569915 | 5_4:+7255828 | Msa0834240:CDS |
| TGTTTCCTGTAAGCTTTGAG+AGG | 0.577210 | 5_4:+7256126 | Msa0834240:intron |
| AATCCTGAATAAGTGGGTAT+GGG | 0.578321 | 5_4:-7253975 | None:intergenic |
| GTAAGAGTCATTAGATCACC+TGG | 0.584194 | 5_4:-7255846 | None:intergenic |
| ATGGCCATACAGAAAAGAAA+GGG | 0.589553 | 5_4:+7256819 | Msa0834240:CDS |
| GATCTAGACAAGAACTCCAT+AGG | 0.595247 | 5_4:-7254489 | None:intergenic |
| AAGAACTCCATAGGCTCAAG+AGG | 0.596767 | 5_4:-7254480 | None:intergenic |
| AAAGGATCATGGCAATGGCA+AGG | 0.597294 | 5_4:+7254375 | Msa0834240:CDS |
| AAACATAATCCTGAATAAGT+GGG | 0.599991 | 5_4:-7253981 | None:intergenic |
| TCGTTTCAGGTGCATTACGA+TGG | 0.606649 | 5_4:+7256435 | Msa0834240:intron |
| GGAGAAAAGGATCATGGCAA+TGG | 0.608247 | 5_4:+7254370 | Msa0834240:CDS |
| CGCTTCTACTGTTAAGTCTG+CGG | 0.608778 | 5_4:+7255809 | Msa0834240:CDS |
| AAGATCAAAAGCAAGCACAT+TGG | 0.613502 | 5_4:+7256583 | Msa0834240:CDS |
| GAGAACCATTCTCCATGCGA+GGG | 0.616237 | 5_4:+7256270 | Msa0834240:CDS |
| TTTGGCCTCAAAACTGCACA+AGG | 0.625130 | 5_4:+7256862 | Msa0834240:CDS |
| GCCTCAAATCTATGATACTG+TGG | 0.626507 | 5_4:-7257195 | None:intergenic |
| TGAGAACCATTCTCCATGCG+AGG | 0.636940 | 5_4:+7256269 | Msa0834240:CDS |
| TGATGTACAGAATTTGTGAG+TGG | 0.670251 | 5_4:+7254300 | Msa0834240:intron |
| GTAACACGTATTAACAAACA+TGG | 0.670938 | 5_4:-7257173 | None:intergenic |
| TTGTGTTAAGAAGAATGTGG+TGG | 0.677334 | 5_4:-7254093 | None:intergenic |
| TGTGTAATGAAGACTCTGCA+TGG | 0.693566 | 5_4:+7256800 | Msa0834240:CDS |
| ACTTAACAGTAGAAGCGACA+CGG | 0.702641 | 5_4:-7255803 | None:intergenic |
| AACCACAGAAGCCAACGCGG+AGG | 0.719869 | 5_4:-7255673 | None:intergenic |
| AAATGAAAACCAAAGTACGG+TGG | 0.727522 | 5_4:-7253937 | None:intergenic |
| AGCAACCACAGAAGCCAACG+CGG | 0.728782 | 5_4:-7255676 | None:intergenic |
| TGCATTACGATGGAAACATG+TGG | 0.750334 | 5_4:+7256445 | Msa0834240:CDS |
| ATAAGATGCTAAGAGCTGTG+TGG | 0.765894 | 5_4:-7255742 | None:intergenic |
| GTGTTGTGTTAAGAAGAATG+TGG | 0.777204 | 5_4:-7254096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACAAATATATATATATATA+GGG | - | chr5_4:7254213-7254232 | None:intergenic | 10.0% |
| !!! | TAGATTGATTATTATTTTAT+AGG | + | chr5_4:7256763-7256782 | Msa0834240:intron | 10.0% |
| !!! | TAAAAAATTCATAGATTTTT+CGG | - | chr5_4:7256983-7257002 | None:intergenic | 10.0% |
| !! | AAGAAAAAAACAAAGTAATA+TGG | - | chr5_4:7254022-7254041 | None:intergenic | 15.0% |
| !! | AGTAAAGAAAGAATATTATA+AGG | - | chr5_4:7254062-7254081 | None:intergenic | 15.0% |
| !! | CCACAAATATATATATATAT+AGG | - | chr5_4:7254214-7254233 | None:intergenic | 15.0% |
| !! | CCTATATATATATATATTTG+TGG | + | chr5_4:7254211-7254230 | Msa0834240:intron | 15.0% |
| !!! | TCTCTTTAATTTTTGTTTTT+AGG | - | chr5_4:7256512-7256531 | None:intergenic | 15.0% |
| !!! | AAAATTAAAGAGATGAATTT+TGG | + | chr5_4:7256519-7256538 | Msa0834240:intron | 15.0% |
| !!! | TTGTATTTATCTTAATTTTC+AGG | + | chr5_4:7256552-7256571 | Msa0834240:intron | 15.0% |
| !! | GCTAAAAAGAAAAAGTTATA+GGG | - | chr5_4:7254191-7254210 | None:intergenic | 20.0% |
| !! | ATCAAAGTTTATAAATCAGA+TGG | + | chr5_4:7254239-7254258 | Msa0834240:intron | 20.0% |
| !! | TCAAATAAATCAATCCAAAT+AGG | - | chr5_4:7254676-7254695 | None:intergenic | 20.0% |
| !!! | ATTTATTTGAGTTTATCTAC+TGG | + | chr5_4:7254686-7254705 | Msa0834240:intron | 20.0% |
| !! | AAGTATTTGTGAGATTATTT+AGG | - | chr5_4:7255084-7255103 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAAAC+AGG | + | chr5_4:7255324-7255343 | Msa0834240:intron | 20.0% |
| !! | TTAAGTTATTTATCCAAACA+GGG | + | chr5_4:7255325-7255344 | Msa0834240:intron | 20.0% |
| !!! | TAGTCTTTTGCTTAATTTTT+AGG | - | chr5_4:7255382-7255401 | None:intergenic | 20.0% |
| !! | ATAAAGAATAACAACATGTT+TGG | + | chr5_4:7255429-7255448 | Msa0834240:intron | 20.0% |
| !! | TTTCTCAATTAAAAGGAATA+AGG | + | chr5_4:7256349-7256368 | Msa0834240:intron | 20.0% |
| !!! | GTATCATTATTTTTACTCTA+TGG | + | chr5_4:7256402-7256421 | Msa0834240:intron | 20.0% |
| !!! | ATGCTTACATTTATTCTTTT+TGG | - | chr5_4:7256620-7256639 | None:intergenic | 20.0% |
| !!! | TGATTTTTACAATGACATAT+TGG | - | chr5_4:7256703-7256722 | None:intergenic | 20.0% |
| !!! | TTTCTTCAGAAATTTTTGTA+TGG | + | chr5_4:7256724-7256743 | Msa0834240:intron | 20.0% |
| !!! | TGATTATTATTTTATAGGTG+TGG | + | chr5_4:7256768-7256787 | Msa0834240:intron | 20.0% |
| !!! | TTTTGTGATTACATTTTGTA+TGG | - | chr5_4:7257119-7257138 | None:intergenic | 20.0% |
| ! | AAGAAATGAAAACCAAAGTA+CGG | - | chr5_4:7253943-7253962 | None:intergenic | 25.0% |
| ! | AAACATAATCCTGAATAAGT+GGG | - | chr5_4:7253984-7254003 | None:intergenic | 25.0% |
| ! | AAAACATAATCCTGAATAAG+TGG | - | chr5_4:7253985-7254004 | None:intergenic | 25.0% |
| !!! | TAATTTTGATGAAGAGAAGA+AGG | - | chr5_4:7254158-7254177 | None:intergenic | 25.0% |
| ! | TTCTCTTCATCAAAATTACA+AGG | + | chr5_4:7254160-7254179 | Msa0834240:five_prime_UTR | 25.0% |
| ! | GGCTAAAAAGAAAAAGTTAT+AGG | - | chr5_4:7254192-7254211 | None:intergenic | 25.0% |
| ! | AAAGTGATATGTTTCAACAT+TGG | + | chr5_4:7254349-7254368 | Msa0834240:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr5_4:7254904-7254923 | None:intergenic | 25.0% |
| !! | ACTATTTTCATAAGCTATTC+TGG | + | chr5_4:7255006-7255025 | Msa0834240:intron | 25.0% |
| !! | TACTTAATGCATTTTAGATC+AGG | + | chr5_4:7255099-7255118 | Msa0834240:intron | 25.0% |
| !! | TTCTTTATTTGTCCATATCT+GGG | - | chr5_4:7255417-7255436 | None:intergenic | 25.0% |
| !! | ATTCTTTATTTGTCCATATC+TGG | - | chr5_4:7255418-7255437 | None:intergenic | 25.0% |
| ! | TTTCTATGATTGTAAGTTGT+AGG | + | chr5_4:7256063-7256082 | Msa0834240:intron | 25.0% |
| ! | TTGATATGGAACAATATTGA+TGG | + | chr5_4:7256088-7256107 | Msa0834240:intron | 25.0% |
| !! | TTAGCTCTTTCTCAATTAAA+AGG | + | chr5_4:7256342-7256361 | Msa0834240:intron | 25.0% |
| ! | TTACATCAACAAGAAATATC+AGG | + | chr5_4:7256472-7256491 | Msa0834240:CDS | 25.0% |
| !! | TATTTTATAGGTGTGGTTTA+TGG | + | chr5_4:7256775-7256794 | Msa0834240:intron | 25.0% |
| ! | AATCCAAACAAATCAAGAAT+TGG | - | chr5_4:7257016-7257035 | None:intergenic | 25.0% |
| ! | AATGAAATAATGTTCACTAC+AGG | + | chr5_4:7257138-7257157 | Msa0834240:three_prime_UTR | 25.0% |
| AACCAACGTTGTAACTAAAA+AGG | + | chr5_4:7253904-7253923 | Msa0834240:five_prime_UTR | 30.0% | |
| !!! | AACCTTTTTAGTTACAACGT+TGG | - | chr5_4:7253909-7253928 | None:intergenic | 30.0% |
| ATGTTTCAACATTGGAGAAA+AGG | + | chr5_4:7254357-7254376 | Msa0834240:CDS | 30.0% | |
| AATAAGCTTACCGTTAATTG+AGG | - | chr5_4:7254618-7254637 | None:intergenic | 30.0% | |
| GCTTATGGACGTTTAATAAA+CGG | - | chr5_4:7254753-7254772 | None:intergenic | 30.0% | |
| ! | AAACATGGTCACAATTTGTT+TGG | - | chr5_4:7254889-7254908 | None:intergenic | 30.0% |
| AAACAAATTGTGACCATGTT+TGG | + | chr5_4:7254888-7254907 | Msa0834240:intron | 30.0% | |
| ! | AATAAGTTGAAAACAGCTTG+TGG | + | chr5_4:7255042-7255061 | Msa0834240:intron | 30.0% |
| ! | ATAAGTTGAAGACAGCTTAA+GGG | - | chr5_4:7255166-7255185 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAGACAGCTTA+AGG | - | chr5_4:7255167-7255186 | None:intergenic | 30.0% |
| ATAAAGTTGAAACCCAGATA+TGG | + | chr5_4:7255402-7255421 | Msa0834240:intron | 30.0% | |
| AGAATAACAACATGTTTGGT+TGG | + | chr5_4:7255433-7255452 | Msa0834240:intron | 30.0% | |
| ACCATTTACTAATTGTCGAA+TGG | + | chr5_4:7255521-7255540 | Msa0834240:CDS | 30.0% | |
| CCATTTACTAATTGTCGAAT+GGG | + | chr5_4:7255522-7255541 | Msa0834240:CDS | 30.0% | |
| TAGTGACAATCACTCTAAAT+TGG | + | chr5_4:7255701-7255720 | Msa0834240:CDS | 30.0% | |
| AGCATCTTATTGTGTTGAAA+TGG | + | chr5_4:7255755-7255774 | Msa0834240:CDS | 30.0% | |
| GTAAGTTGTAGGATTTGATA+TGG | + | chr5_4:7256074-7256093 | Msa0834240:intron | 30.0% | |
| ! | ATGGAACAATATTGATGGTT+TGG | + | chr5_4:7256093-7256112 | Msa0834240:intron | 30.0% |
| ! | GCATTTTTCTTTGCTTCTTT+TGG | - | chr5_4:7256177-7256196 | None:intergenic | 30.0% |
| ! | TGGTTGATATATTTCGTTTC+AGG | + | chr5_4:7256422-7256441 | Msa0834240:intron | 30.0% |
| GATGGAATAGAATTTCTACT+TGG | + | chr5_4:7256934-7256953 | Msa0834240:CDS | 30.0% | |
| !! | GTACCAATTCTTGATTTGTT+TGG | + | chr5_4:7257010-7257029 | Msa0834240:exon | 30.0% |
| TGTATATGTCTCAATAGAGT+AGG | + | chr5_4:7257037-7257056 | Msa0834240:three_prime_UTR | 30.0% | |
| ! | GATTACATTTTGTATGGTAG+AGG | - | chr5_4:7257113-7257132 | None:intergenic | 30.0% |
| GTAACACGTATTAACAAACA+TGG | - | chr5_4:7257176-7257195 | None:intergenic | 30.0% | |
| AAATGAAAACCAAAGTACGG+TGG | - | chr5_4:7253940-7253959 | None:intergenic | 35.0% | |
| AATCCTGAATAAGTGGGTAT+GGG | - | chr5_4:7253978-7253997 | None:intergenic | 35.0% | |
| TAATCCTGAATAAGTGGGTA+TGG | - | chr5_4:7253979-7253998 | None:intergenic | 35.0% | |
| TTGTGTTAAGAAGAATGTGG+TGG | - | chr5_4:7254096-7254115 | None:intergenic | 35.0% | |
| GTGTTGTGTTAAGAAGAATG+TGG | - | chr5_4:7254099-7254118 | None:intergenic | 35.0% | |
| ATCAGTTGAGAGTGAGATAT+AGG | - | chr5_4:7254130-7254149 | None:intergenic | 35.0% | |
| TGATGTACAGAATTTGTGAG+TGG | + | chr5_4:7254300-7254319 | Msa0834240:intron | 35.0% | |
| TGTGAGTGGTTAGTAAATGA+TGG | + | chr5_4:7254314-7254333 | Msa0834240:exon | 35.0% | |
| AACATTGGAGAAAAGGATCA+TGG | + | chr5_4:7254364-7254383 | Msa0834240:CDS | 35.0% | |
| !! | TTCTGCTTCTGAGATTTCAA+AGG | + | chr5_4:7254521-7254540 | Msa0834240:CDS | 35.0% |
| TAAGACTCATGAAACATTGC+CGG | + | chr5_4:7254578-7254597 | Msa0834240:CDS | 35.0% | |
| GTTGACTAGCAATACATTTC+AGG | + | chr5_4:7254650-7254669 | Msa0834240:intron | 35.0% | |
| CAATACATTTCAGGCCTATT+TGG | + | chr5_4:7254659-7254678 | Msa0834240:intron | 35.0% | |
| TACTGGCATAAGTATTTGTG+AGG | + | chr5_4:7254703-7254722 | Msa0834240:intron | 35.0% | |
| !! | CTTATTTTCATAAGCTCTCC+AGG | + | chr5_4:7255181-7255200 | Msa0834240:intron | 35.0% |
| GCTGTTCTTATAAACTATCC+TGG | - | chr5_4:7255202-7255221 | None:intergenic | 35.0% | |
| CCCATTCGACAATTAGTAAA+TGG | - | chr5_4:7255525-7255544 | None:intergenic | 35.0% | |
| AATTGTCGAATGGGTACTAT+TGG | + | chr5_4:7255531-7255550 | Msa0834240:CDS | 35.0% | |
| GAATGGGTACTATTGGAAAA+TGG | + | chr5_4:7255538-7255557 | Msa0834240:CDS | 35.0% | |
| !! | ACTTACATCAGAAGCATCAT+GGG | + | chr5_4:7255565-7255584 | Msa0834240:CDS | 35.0% |
| ATGCAAACACTTCTGTTAAG+AGG | + | chr5_4:7255589-7255608 | Msa0834240:CDS | 35.0% | |
| CTCTAAATTGGATGTTGCTA+TGG | + | chr5_4:7255713-7255732 | Msa0834240:CDS | 35.0% | |
| CTGTGAACTGACATTATCTA+TGG | + | chr5_4:7255970-7255989 | Msa0834240:intron | 35.0% | |
| CTATGGTTTAGCTATTTGAG+TGG | + | chr5_4:7255987-7256006 | Msa0834240:intron | 35.0% | |
| !!! | GTTCTATTGCGATTTTTTCG+TGG | + | chr5_4:7256009-7256028 | Msa0834240:intron | 35.0% |
| TCAATTAGTCCCTATGATAG+AGG | + | chr5_4:7256198-7256217 | Msa0834240:CDS | 35.0% | |
| TCTGCAATTCCTCTATCATA+GGG | - | chr5_4:7256210-7256229 | None:intergenic | 35.0% | |
| TTCTGCAATTCCTCTATCAT+AGG | - | chr5_4:7256211-7256230 | None:intergenic | 35.0% | |
| AAGATCAAAAGCAAGCACAT+TGG | + | chr5_4:7256583-7256602 | Msa0834240:CDS | 35.0% | |
| ATGGCCATACAGAAAAGAAA+GGG | + | chr5_4:7256819-7256838 | Msa0834240:CDS | 35.0% | |
| !! | GCTTCTGAAGATCTCTATTT+TGG | + | chr5_4:7256844-7256863 | Msa0834240:CDS | 35.0% |
| CAAACTCCACAAGCAAAAAT+GGG | + | chr5_4:7256909-7256928 | Msa0834240:CDS | 35.0% | |
| ! | TCCAAGCACATTGATTGGAT+TGG | + | chr5_4:7253802-7253821 | Msa0834240:five_prime_UTR | 40.0% |
| GATCTAGACAAGAACTCCAT+AGG | - | chr5_4:7254492-7254511 | None:intergenic | 40.0% | |
| GATTTCTGCGCCTCAATTAA+CGG | + | chr5_4:7254605-7254624 | Msa0834240:CDS | 40.0% | |
| AAGTATTTGTGAGGTCTGTC+TGG | + | chr5_4:7254712-7254731 | Msa0834240:intron | 40.0% | |
| ! | GTCTGTCTGGAAGAGTATAT+GGG | + | chr5_4:7254725-7254744 | Msa0834240:intron | 40.0% |
| TTAAACGTCCATAAGCTCTC+AGG | + | chr5_4:7254757-7254776 | Msa0834240:intron | 40.0% | |
| TAAACGTCCATAAGCTCTCA+GGG | + | chr5_4:7254758-7254777 | Msa0834240:intron | 40.0% | |
| ! | CTAATGCTATTTGCCCTGTT+TGG | - | chr5_4:7255341-7255360 | None:intergenic | 40.0% |
| GTAAATGGTATGAGCTTTCC+AGG | - | chr5_4:7255510-7255529 | None:intergenic | 40.0% | |
| !! | CACTTACATCAGAAGCATCA+TGG | + | chr5_4:7255564-7255583 | Msa0834240:CDS | 40.0% |
| CATTCTGCACTATCAATTGC+CGG | + | chr5_4:7255645-7255664 | Msa0834240:CDS | 40.0% | |
| ATAAGATGCTAAGAGCTGTG+TGG | - | chr5_4:7255745-7255764 | None:intergenic | 40.0% | |
| ACTTAACAGTAGAAGCGACA+CGG | - | chr5_4:7255806-7255825 | None:intergenic | 40.0% | |
| GTAAGAGTCATTAGATCACC+TGG | - | chr5_4:7255849-7255868 | None:intergenic | 40.0% | |
| AACTCAACCAGACAGTTCAA+CGG | + | chr5_4:7255935-7255954 | Msa0834240:intron | 40.0% | |
| !!! | TTTTTTCGTGGTTCAGTGTC+TGG | + | chr5_4:7256021-7256040 | Msa0834240:intron | 40.0% |
| !! | TGTTTCCTGTAAGCTTTGAG+AGG | + | chr5_4:7256126-7256145 | Msa0834240:intron | 40.0% |
| TTGTTGCAGGTTACGGAAAA+AGG | + | chr5_4:7256297-7256316 | Msa0834240:CDS | 40.0% | |
| TGCATTACGATGGAAACATG+TGG | + | chr5_4:7256445-7256464 | Msa0834240:CDS | 40.0% | |
| ATCAAAAGCAAGCACATTGG+AGG | + | chr5_4:7256586-7256605 | Msa0834240:CDS | 40.0% | |
| TGTGTAATGAAGACTCTGCA+TGG | + | chr5_4:7256800-7256819 | Msa0834240:CDS | 40.0% | |
| CATGGCCATACAGAAAAGAA+AGG | + | chr5_4:7256818-7256837 | Msa0834240:CDS | 40.0% | |
| ! | GCTTCCCTTTCTTTTCTGTA+TGG | - | chr5_4:7256826-7256845 | None:intergenic | 40.0% |
| GCAAACTCCACAAGCAAAAA+TGG | + | chr5_4:7256908-7256927 | Msa0834240:CDS | 40.0% | |
| !! | CATCAACCCATTTTTGCTTG+TGG | - | chr5_4:7256918-7256937 | None:intergenic | 40.0% |
| !! | CACAAGCAAAAATGGGTTGA+TGG | + | chr5_4:7256916-7256935 | Msa0834240:CDS | 40.0% |
| ACTGGTCCAAGCACATTGAT+TGG | + | chr5_4:7253797-7253816 | Msa0834240:five_prime_UTR | 45.0% | |
| GCCAATCCAATCAATGTGCT+TGG | - | chr5_4:7253806-7253825 | None:intergenic | 45.0% | |
| TCACTACTACCACCGTACTT+TGG | + | chr5_4:7253928-7253947 | Msa0834240:five_prime_UTR | 45.0% | |
| GAACCCATACCCACTTATTC+AGG | + | chr5_4:7253972-7253991 | Msa0834240:five_prime_UTR | 45.0% | |
| GGAGAAAAGGATCATGGCAA+TGG | + | chr5_4:7254370-7254389 | Msa0834240:CDS | 45.0% | |
| AAAGGATCATGGCAATGGCA+AGG | + | chr5_4:7254375-7254394 | Msa0834240:CDS | 45.0% | |
| AAGGATCATGGCAATGGCAA+GGG | + | chr5_4:7254376-7254395 | Msa0834240:CDS | 45.0% | |
| AAGAACTCCATAGGCTCAAG+AGG | - | chr5_4:7254483-7254502 | None:intergenic | 45.0% | |
| TGGAGTTCTTGTCTAGATCC+TGG | + | chr5_4:7254493-7254512 | Msa0834240:CDS | 45.0% | |
| ! | GGTCTGTCTGGAAGAGTATA+TGG | + | chr5_4:7254724-7254743 | Msa0834240:intron | 45.0% |
| AAGTTGTCCCTGAGAGCTTA+TGG | - | chr5_4:7254768-7254787 | None:intergenic | 45.0% | |
| ! | TGTGTTCATCTTTTGCAGCC+TGG | + | chr5_4:7255489-7255508 | Msa0834240:intron | 45.0% |
| GTTGAAATGGCAGAGTTAGC+AGG | + | chr5_4:7255768-7255787 | Msa0834240:CDS | 45.0% | |
| CGCTTCTACTGTTAAGTCTG+CGG | + | chr5_4:7255809-7255828 | Msa0834240:CDS | 45.0% | |
| CTTCTCCTCTCAAAGCTTAC+AGG | - | chr5_4:7256134-7256153 | None:intergenic | 45.0% | |
| AACATCTGACACTCAGAAGC+AGG | - | chr5_4:7256246-7256265 | None:intergenic | 45.0% | |
| !! | GGGAGATTTGTTGCAGGTTA+CGG | + | chr5_4:7256290-7256309 | Msa0834240:CDS | 45.0% |
| ! | TCGTTTCAGGTGCATTACGA+TGG | + | chr5_4:7256435-7256454 | Msa0834240:intron | 45.0% |
| TTTGGCCTCAAAACTGCACA+AGG | + | chr5_4:7256862-7256881 | Msa0834240:CDS | 45.0% | |
| ! | GAAGACCTTGTGCAGTTTTG+AGG | - | chr5_4:7256870-7256889 | None:intergenic | 45.0% |
| TTCACTACAGGAGCTGCTTA+TGG | + | chr5_4:7257150-7257169 | Msa0834240:three_prime_UTR | 45.0% | |
| ! | AGCGCGTTTTCGTACGTAGT+AGG | - | chr5_4:7253878-7253897 | None:intergenic | 50.0% |
| !! | GTTGGTGGCTCAGGAATTTC+TGG | - | chr5_4:7254459-7254478 | None:intergenic | 50.0% |
| !! | ATAGGCTCAAGAGGTGTTGG+TGG | - | chr5_4:7254474-7254493 | None:intergenic | 50.0% |
| ACCAACACCTCTTGAGCCTA+TGG | + | chr5_4:7254473-7254492 | Msa0834240:CDS | 50.0% | |
| ! | TCCATAGGCTCAAGAGGTGT+TGG | - | chr5_4:7254477-7254496 | None:intergenic | 50.0% |
| CTCAGAAGCAGAAAGACTCC+AGG | - | chr5_4:7254514-7254533 | None:intergenic | 50.0% | |
| TGAGGCGCAGAAATCACTTC+CGG | - | chr5_4:7254600-7254619 | None:intergenic | 50.0% | |
| CATTGAGCCGTTGAACTGTC+TGG | - | chr5_4:7255945-7255964 | None:intergenic | 50.0% | |
| TGAGAACCATTCTCCATGCG+AGG | + | chr5_4:7256269-7256288 | Msa0834240:CDS | 50.0% | |
| GAGAACCATTCTCCATGCGA+GGG | + | chr5_4:7256270-7256289 | Msa0834240:CDS | 50.0% | |
| AATCTCCCTCGCATGGAGAA+TGG | - | chr5_4:7256278-7256297 | None:intergenic | 50.0% | |
| TGCAACAAATCTCCCTCGCA+TGG | - | chr5_4:7256285-7256304 | None:intergenic | 50.0% | |
| !! | ATGCGAGGGAGATTTGTTGC+AGG | + | chr5_4:7256284-7256303 | Msa0834240:CDS | 50.0% |
| !! | TCAAGAGGTGTTGGTGGCTC+AGG | - | chr5_4:7254468-7254487 | None:intergenic | 55.0% |
| AGCAACCACAGAAGCCAACG+CGG | - | chr5_4:7255679-7255698 | None:intergenic | 55.0% | |
| GCGGTCGATATTCAAACGCC+AGG | + | chr5_4:7255828-7255847 | Msa0834240:CDS | 55.0% | |
| CTTACTGCTGCAGCTGCAAC+AGG | + | chr5_4:7255864-7255883 | Msa0834240:CDS | 55.0% | |
| AACCACAGAAGCCAACGCGG+AGG | - | chr5_4:7255676-7255695 | None:intergenic | 60.0% | |
| ! | AGCCAACGCGGAGGCTAGTC+CGG | - | chr5_4:7255667-7255686 | None:intergenic | 65.0% |
| !! | AGCCTCCGCGTTGGCTTCTG+TGG | + | chr5_4:7255671-7255690 | Msa0834240:CDS | 65.0% |
| !! | TGCCGGACTAGCCTCCGCGT+TGG | + | chr5_4:7255662-7255681 | Msa0834240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7253796 | 7257205 | 7253796 | ID=Msa0834240;Name=Msa0834240 |
| chr5_4 | mRNA | 7253796 | 7257205 | 7253796 | ID=Msa0834240-mRNA-1;Parent=Msa0834240;Name=Msa0834240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=406|1|1|1|0.83|0.71|7|182|400 |
| chr5_4 | exon | 7253796 | 7254181 | 7253796 | ID=Msa0834240-mRNA-1:exon:3189;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7254310 | 7254626 | 7254310 | ID=Msa0834240-mRNA-1:exon:3190;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7255507 | 7255885 | 7255507 | ID=Msa0834240-mRNA-1:exon:3191;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7256139 | 7256318 | 7256139 | ID=Msa0834240-mRNA-1:exon:3192;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7256444 | 7256493 | 7256444 | ID=Msa0834240-mRNA-1:exon:3193;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7256574 | 7256631 | 7256574 | ID=Msa0834240-mRNA-1:exon:3194;Parent=Msa0834240-mRNA-1 |
| chr5_4 | exon | 7256785 | 7257205 | 7256785 | ID=Msa0834240-mRNA-1:exon:3195;Parent=Msa0834240-mRNA-1 |
| chr5_4 | five_prime_UTR | 7253796 | 7254181 | 7253796 | ID=Msa0834240-mRNA-1:five_prime_utr;Parent=Msa0834240-mRNA-1 |
| chr5_4 | five_prime_UTR | 7254310 | 7254329 | 7254310 | ID=Msa0834240-mRNA-1:five_prime_utr;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7254330 | 7254626 | 7254330 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7255507 | 7255885 | 7255507 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7256139 | 7256318 | 7256139 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7256444 | 7256493 | 7256444 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7256574 | 7256631 | 7256574 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | CDS | 7256785 | 7257023 | 7256785 | ID=Msa0834240-mRNA-1:cds;Parent=Msa0834240-mRNA-1 |
| chr5_4 | three_prime_UTR | 7257024 | 7257205 | 7257024 | ID=Msa0834240-mRNA-1:three_prime_utr;Parent=Msa0834240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
