Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331740 | XP_003597896.1 | 81.481 | 135 | 7 | 1 | 1 | 117 | 1 | 135 | 6.85e-62 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0331740 | 0.804070 | 2.576409e-49 | -8.615850e-47 |
| Msa0021980 | Msa0331740 | 0.814730 | 1.327770e-51 | -8.615850e-47 |
| Msa0038310 | Msa0331740 | 0.820477 | 6.719658e-53 | -8.615850e-47 |
| Msa0039200 | Msa0331740 | 0.811509 | 6.756367e-51 | -8.615850e-47 |
| Msa0040190 | Msa0331740 | 0.808140 | 3.585010e-50 | -8.615850e-47 |
| Msa0047470 | Msa0331740 | 0.802266 | 6.087198e-49 | -8.615850e-47 |
| Msa0051100 | Msa0331740 | 0.841536 | 4.478752e-58 | -8.615850e-47 |
| Msa0053480 | Msa0331740 | 0.812625 | 3.859018e-51 | -8.615850e-47 |
| Msa0057740 | Msa0331740 | 0.800750 | 1.244814e-48 | -8.615850e-47 |
| Msa0060600 | Msa0331740 | 0.812629 | 3.850531e-51 | -8.615850e-47 |
| Msa0086820 | Msa0331740 | 0.805000 | 1.648858e-49 | -8.615850e-47 |
| Msa0103060 | Msa0331740 | 0.814710 | 1.341540e-51 | -8.615850e-47 |
| Msa0105340 | Msa0331740 | 0.814157 | 1.777059e-51 | -8.615850e-47 |
| Msa0133670 | Msa0331740 | 0.810574 | 1.077006e-50 | -8.615850e-47 |
| Msa0133880 | Msa0331740 | 0.815208 | 1.039783e-51 | -8.615850e-47 |
| Msa0134550 | Msa0331740 | 0.810518 | 1.107881e-50 | -8.615850e-47 |
| Msa0151690 | Msa0331740 | 0.824454 | 8.000342e-54 | -8.615850e-47 |
| Msa0169960 | Msa0331740 | 0.817687 | 2.898530e-52 | -8.615850e-47 |
| Msa0184120 | Msa0331740 | 0.818076 | 2.366749e-52 | -8.615850e-47 |
| Msa0213090 | Msa0331740 | 0.810349 | 1.204484e-50 | -8.615850e-47 |
| Msa0221800 | Msa0331740 | 0.808311 | 3.296021e-50 | -8.615850e-47 |
| Msa0226290 | Msa0331740 | 0.839184 | 1.843761e-57 | -8.615850e-47 |
| Msa0253370 | Msa0331740 | 0.810182 | 1.309041e-50 | -8.615850e-47 |
| Msa0256170 | Msa0331740 | 0.824046 | 9.977340e-54 | -8.615850e-47 |
| Msa0256430 | Msa0331740 | 0.802912 | 4.479436e-49 | -8.615850e-47 |
| Msa0264240 | Msa0331740 | 0.805461 | 1.320164e-49 | -8.615850e-47 |
| Msa0268680 | Msa0331740 | 0.827376 | 1.619197e-54 | -8.615850e-47 |
| Msa0269100 | Msa0331740 | 0.806767 | 7.008705e-50 | -8.615850e-47 |
| Msa0288320 | Msa0331740 | 0.818311 | 2.094569e-52 | -8.615850e-47 |
| Msa0304700 | Msa0331740 | 0.817774 | 2.770108e-52 | -8.615850e-47 |
| Msa0306130 | Msa0331740 | 0.806232 | 9.089156e-50 | -8.615850e-47 |
| Msa0330270 | Msa0331740 | 0.826148 | 3.180604e-54 | -8.615850e-47 |
| Msa0330400 | Msa0331740 | 0.816523 | 5.292422e-52 | -8.615850e-47 |
| Msa0331740 | Msa0336270 | 0.817177 | 3.774302e-52 | -8.615850e-47 |
| Msa0331740 | Msa0338900 | 0.814627 | 1.399358e-51 | -8.615850e-47 |
| Msa0331740 | Msa0339560 | 0.816561 | 5.190016e-52 | -8.615850e-47 |
| Msa0331740 | Msa0362430 | 0.834684 | 2.599945e-56 | -8.615850e-47 |
| Msa0331740 | Msa0363440 | 0.804625 | 1.974268e-49 | -8.615850e-47 |
| Msa0331740 | Msa0363460 | 0.816036 | 6.802012e-52 | -8.615850e-47 |
| Msa0331740 | Msa0365150 | 0.800711 | 1.267987e-48 | -8.615850e-47 |
| Msa0331740 | Msa0371420 | -0.816210 | 6.219350e-52 | -8.615850e-47 |
| Msa0331740 | Msa0401570 | 0.803483 | 3.412130e-49 | -8.615850e-47 |
| Msa0331740 | Msa0411000 | 0.820271 | 7.489869e-53 | -8.615850e-47 |
| Msa0331740 | Msa0414070 | 0.832605 | 8.591174e-56 | -8.615850e-47 |
| Msa0331740 | Msa0419620 | -0.803206 | 3.894659e-49 | -8.615850e-47 |
| Msa0331740 | Msa0423600 | 0.801277 | 9.713664e-49 | -8.615850e-47 |
| Msa0331740 | Msa0427050 | 0.828185 | 1.034777e-54 | -8.615850e-47 |
| Msa0331740 | Msa0439700 | 0.806901 | 6.567274e-50 | -8.615850e-47 |
| Msa0331740 | Msa0440110 | 0.821874 | 3.201592e-53 | -8.615850e-47 |
| Msa0331740 | Msa0452010 | 0.801578 | 8.429243e-49 | -8.615850e-47 |
| Msa0331740 | Msa0454940 | 0.816090 | 6.616482e-52 | -8.615850e-47 |
| Msa0331740 | Msa0455230 | 0.813955 | 1.969693e-51 | -8.615850e-47 |
| Msa0331740 | Msa0456480 | 0.822694 | 2.065375e-53 | -8.615850e-47 |
| Msa0331740 | Msa0457370 | 0.810632 | 1.046450e-50 | -8.615850e-47 |
| Msa0331740 | Msa0459120 | 0.837372 | 5.404521e-57 | -8.615850e-47 |
| Msa0331740 | Msa0463960 | 0.801963 | 7.027184e-49 | -8.615850e-47 |
| Msa0331740 | Msa0465680 | -0.823066 | 1.691743e-53 | -8.615850e-47 |
| Msa0331740 | Msa0473450 | 0.833939 | 3.997350e-56 | -8.615850e-47 |
| Msa0331740 | Msa0475360 | 0.823522 | 1.324050e-53 | -8.615850e-47 |
| Msa0331740 | Msa0492740 | 0.806361 | 8.539294e-50 | -8.615850e-47 |
| Msa0331740 | Msa0496460 | 0.819733 | 9.946404e-53 | -8.615850e-47 |
| Msa0331740 | Msa0498830 | 0.801540 | 8.581272e-49 | -8.615850e-47 |
| Msa0331740 | Msa0502910 | 0.857726 | 1.341490e-62 | -8.615850e-47 |
| Msa0331740 | Msa0505660 | 0.831839 | 1.329718e-55 | -8.615850e-47 |
| Msa0331740 | Msa0549740 | 0.817289 | 3.562623e-52 | -8.615850e-47 |
| Msa0331740 | Msa0553520 | 0.817374 | 3.409157e-52 | -8.615850e-47 |
| Msa0331740 | Msa0563140 | 0.812443 | 4.227947e-51 | -8.615850e-47 |
| Msa0331740 | Msa0568490 | 0.825245 | 5.205894e-54 | -8.615850e-47 |
| Msa0331740 | Msa0589540 | 0.806954 | 6.401397e-50 | -8.615850e-47 |
| Msa0331740 | Msa0592470 | 0.802354 | 5.838315e-49 | -8.615850e-47 |
| Msa0331740 | Msa0617370 | 0.833596 | 4.870703e-56 | -8.615850e-47 |
| Msa0331740 | Msa0621890 | 0.803050 | 4.193361e-49 | -8.615850e-47 |
| Msa0331740 | Msa0632540 | 0.801997 | 6.912622e-49 | -8.615850e-47 |
| Msa0331740 | Msa0639030 | 0.817177 | 3.774144e-52 | -8.615850e-47 |
| Msa0331740 | Msa0641020 | 0.801189 | 1.012422e-48 | -8.615850e-47 |
| Msa0331740 | Msa0646390 | 0.817462 | 3.256202e-52 | -8.615850e-47 |
| Msa0331740 | Msa0656270 | 0.823097 | 1.663421e-53 | -8.615850e-47 |
| Msa0331740 | Msa0678240 | 0.802006 | 6.884215e-49 | -8.615850e-47 |
| Msa0331740 | Msa0697140 | 0.807697 | 4.453697e-50 | -8.615850e-47 |
| Msa0331740 | Msa0697600 | 0.811697 | 6.151070e-51 | -8.615850e-47 |
| Msa0331740 | Msa0700070 | 0.818130 | 2.301255e-52 | -8.615850e-47 |
| Msa0331740 | Msa0721150 | 0.815007 | 1.152257e-51 | -8.615850e-47 |
| Msa0331740 | Msa0722930 | 0.818330 | 2.073926e-52 | -8.615850e-47 |
| Msa0331740 | Msa0723140 | 0.816844 | 4.483841e-52 | -8.615850e-47 |
| Msa0331740 | Msa0733400 | 0.802454 | 5.566797e-49 | -8.615850e-47 |
| Msa0331740 | Msa0736930 | 0.829366 | 5.360278e-55 | -8.615850e-47 |
| Msa0331740 | Msa0738600 | 0.810797 | 9.639189e-51 | -8.615850e-47 |
| Msa0331740 | Msa0739570 | 0.806620 | 7.529953e-50 | -8.615850e-47 |
| Msa0331740 | Msa0739610 | 0.835137 | 1.999434e-56 | -8.615850e-47 |
| Msa0331740 | Msa0756410 | 0.802737 | 4.866740e-49 | -8.615850e-47 |
| Msa0331740 | Msa0761760 | 0.812170 | 4.851104e-51 | -8.615850e-47 |
| Msa0331740 | Msa0773290 | 0.811739 | 6.020611e-51 | -8.615850e-47 |
| Msa0331740 | Msa0778580 | 0.822810 | 1.940450e-53 | -8.615850e-47 |
| Msa0331740 | Msa0797620 | 0.818264 | 2.146060e-52 | -8.615850e-47 |
| Msa0331740 | Msa0801390 | 0.802210 | 6.250843e-49 | -8.615850e-47 |
| Msa0331740 | Msa0804060 | 0.807936 | 3.962093e-50 | -8.615850e-47 |
| Msa0331740 | Msa0811940 | 0.807733 | 4.375682e-50 | -8.615850e-47 |
| Msa0331740 | Msa0815950 | 0.829811 | 4.177486e-55 | -8.615850e-47 |
| Msa0331740 | Msa0818950 | 0.811166 | 8.020595e-51 | -8.615850e-47 |
| Msa0331740 | Msa0819670 | 0.844518 | 7.196339e-59 | -8.615850e-47 |
| Msa0331740 | Msa0837510 | -0.800369 | 1.488705e-48 | -8.615850e-47 |
| Msa0331740 | Msa0842240 | 0.803416 | 3.522988e-49 | -8.615850e-47 |
| Msa0331740 | Msa0843280 | 0.802996 | 4.302702e-49 | -8.615850e-47 |
| Msa0331740 | Msa0859950 | 0.805226 | 1.478327e-49 | -8.615850e-47 |
| Msa0331740 | Msa0860270 | 0.813256 | 2.806648e-51 | -8.615850e-47 |
| Msa0331740 | Msa0873010 | 0.804267 | 2.344553e-49 | -8.615850e-47 |
| Msa0331740 | Msa0883390 | 0.818297 | 2.109806e-52 | -8.615850e-47 |
| Msa0331740 | Msa0883410 | 0.805953 | 1.040508e-49 | -8.615850e-47 |
| Msa0331740 | Msa0883430 | 0.833386 | 5.494081e-56 | -8.615850e-47 |
| Msa0331740 | Msa0883660 | 0.851350 | 9.397116e-61 | -8.615850e-47 |
| Msa0331740 | Msa0883670 | 0.835377 | 1.738823e-56 | -8.615850e-47 |
| Msa0331740 | Msa0883690 | 0.848858 | 4.688397e-60 | -8.615850e-47 |
| Msa0331740 | Msa0887000 | 0.808275 | 3.355638e-50 | -8.615850e-47 |
| Msa0331740 | Msa0897390 | 0.801173 | 1.020097e-48 | -8.615850e-47 |
| Msa0331740 | Msa0934830 | 0.803004 | 4.286649e-49 | -8.615850e-47 |
| Msa0331740 | Msa0938300 | 0.807069 | 6.051983e-50 | -8.615850e-47 |
| Msa0331740 | Msa0950410 | 0.811063 | 8.442414e-51 | -8.615850e-47 |
| Msa0331740 | Msa0951720 | 0.808576 | 2.893764e-50 | -8.615850e-47 |
| Msa0331740 | Msa0957800 | 0.806276 | 8.899687e-50 | -8.615850e-47 |
| Msa0331740 | Msa0978000 | 0.818293 | 2.113623e-52 | -8.615850e-47 |
| Msa0331740 | Msa0984840 | 0.814899 | 1.217775e-51 | -8.615850e-47 |
| Msa0331740 | Msa0984850 | 0.846451 | 2.154743e-59 | -8.615850e-47 |
| Msa0331740 | Msa0988500 | 0.831971 | 1.233477e-55 | -8.615850e-47 |
| Msa0331740 | Msa1014120 | 0.805944 | 1.045135e-49 | -8.615850e-47 |
| Msa0331740 | Msa1016110 | 0.843871 | 1.073049e-58 | -8.615850e-47 |
| Msa0331740 | Msa1016130 | 0.801425 | 9.059285e-49 | -8.615850e-47 |
| Msa0331740 | Msa1033670 | 0.808438 | 3.097250e-50 | -8.615850e-47 |
| Msa0331740 | Msa1036350 | 0.814814 | 1.272070e-51 | -8.615850e-47 |
| Msa0331740 | Msa1076630 | 0.814665 | 1.372380e-51 | -8.615850e-47 |
| Msa0331740 | Msa1079610 | 0.831349 | 1.755387e-55 | -8.615850e-47 |
| Msa0331740 | Msa1080790 | 0.810426 | 1.159326e-50 | -8.615850e-47 |
| Msa0331740 | Msa1086340 | 0.807558 | 4.766369e-50 | -8.615850e-47 |
| Msa0331740 | Msa1087000 | 0.813495 | 2.487086e-51 | -8.615850e-47 |
| Msa0331740 | Msa1102180 | 0.815523 | 8.852691e-52 | -8.615850e-47 |
| Msa0331740 | Msa1118930 | 0.813852 | 2.075248e-51 | -8.615850e-47 |
| Msa0331740 | Msa1124440 | 0.812144 | 4.914995e-51 | -8.615850e-47 |
| Msa0331740 | Msa1136140 | 0.835970 | 1.230253e-56 | -8.615850e-47 |
| Msa0331740 | Msa1161160 | 0.801710 | 7.917501e-49 | -8.615850e-47 |
| Msa0331740 | Msa1161520 | 0.800925 | 1.146649e-48 | -8.615850e-47 |
| Msa0331740 | Msa1168130 | 0.804404 | 2.196099e-49 | -8.615850e-47 |
| Msa0331740 | Msa1182400 | 0.808448 | 3.081418e-50 | -8.615850e-47 |
| Msa0331740 | Msa1184050 | 0.801979 | 6.973998e-49 | -8.615850e-47 |
| Msa0331740 | Msa1188820 | 0.810324 | 1.219931e-50 | -8.615850e-47 |
| Msa0331740 | Msa1208250 | 0.802686 | 4.986989e-49 | -8.615850e-47 |
| Msa0331740 | Msa1211370 | 0.832208 | 1.077553e-55 | -8.615850e-47 |
| Msa0331740 | Msa1230190 | 0.800679 | 1.286986e-48 | -8.615850e-47 |
| Msa0331740 | Msa1231520 | 0.802180 | 6.339734e-49 | -8.615850e-47 |
| Msa0331740 | Msa1242990 | 0.837839 | 4.100697e-57 | -8.615850e-47 |
| Msa0331740 | Msa1272130 | 0.829603 | 4.693312e-55 | -8.615850e-47 |
| Msa0331740 | Msa1287160 | 0.806337 | 8.639299e-50 | -8.615850e-47 |
| Msa0331740 | Msa1287340 | 0.808613 | 2.841902e-50 | -8.615850e-47 |
| Msa0331740 | Msa1287640 | 0.805927 | 1.053813e-49 | -8.615850e-47 |
| Msa0331740 | Msa1289340 | 0.818970 | 1.483998e-52 | -8.615850e-47 |
| Msa0331740 | Msa1304850 | 0.801383 | 9.242619e-49 | -8.615850e-47 |
| Msa0331740 | Msa1319440 | 0.819896 | 9.127061e-53 | -8.615850e-47 |
| Msa0331740 | Msa1323920 | 0.801366 | 9.316314e-49 | -8.615850e-47 |
| Msa0331740 | Msa1343770 | 0.803636 | 3.171795e-49 | -8.615850e-47 |
| Msa0331740 | Msa1346540 | 0.801826 | 7.494801e-49 | -8.615850e-47 |
| Msa0331740 | Msa1357380 | 0.805122 | 1.554874e-49 | -8.615850e-47 |
| Msa0331740 | Msa1357720 | 0.805136 | 1.544388e-49 | -8.615850e-47 |
| Msa0331740 | Msa1360380 | 0.838379 | 2.977992e-57 | -8.615850e-47 |
| Msa0331740 | Msa1366700 | 0.803264 | 3.788348e-49 | -8.615850e-47 |
| Msa0331740 | Msa1384980 | 0.833069 | 6.589655e-56 | -8.615850e-47 |
| Msa0331740 | Msa1386520 | 0.841319 | 5.106170e-58 | -8.615850e-47 |
| Msa0331740 | Msa1387090 | 0.806131 | 9.547129e-50 | -8.615850e-47 |
| Msa0331740 | Msa1397540 | 0.806492 | 8.011008e-50 | -8.615850e-47 |
| Msa0331740 | Msa1405470 | 0.810611 | 1.057768e-50 | -8.615850e-47 |
| Msa0331740 | Msa1413880 | 0.803058 | 4.177846e-49 | -8.615850e-47 |
| Msa0331740 | Msa1415270 | 0.823939 | 1.057221e-53 | -8.615850e-47 |
| Msa0331740 | Msa1428440 | 0.838609 | 2.597277e-57 | -8.615850e-47 |
| Msa0331740 | Msa1432250 | 0.803713 | 3.056447e-49 | -8.615850e-47 |
| Msa0331740 | Msa1440180 | 0.807859 | 4.113218e-50 | -8.615850e-47 |
| Msa0331740 | Msa1445250 | 0.805448 | 1.328209e-49 | -8.615850e-47 |
| Msa0331740 | Msa1449740 | 0.806743 | 7.094292e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331740 | MtrunA17_Chr2g0333051 | 81.481 | 135 | 7 | 1 | 1 | 117 | 1 | 135 | 6.30e-66 | 195 |
| Msa0331740 | MtrunA17_Chr4g0003391 | 45.038 | 131 | 49 | 4 | 1 | 116 | 1 | 123 | 1.60e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331740 | AT1G52565.1 | 41.538 | 130 | 56 | 5 | 1 | 117 | 4 | 126 | 6.71e-14 | 63.5 |
| Msa0331740 | AT3G15760.1 | 38.686 | 137 | 59 | 6 | 1 | 117 | 1 | 132 | 2.31e-13 | 62.4 |
Find 27 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCATCATTTCAAATTCT+TGG | 0.191389 | 2_4:+47714885 | Msa0331740:CDS |
| TACAAAGCCATTCTATTTGC+AGG | 0.298881 | 2_4:-47715506 | None:intergenic |
| CATCACTAGTTATTTGAGAT+TGG | 0.337453 | 2_4:+47715782 | Msa0331740:three_prime_UTR |
| CTTCCAAGAATTTGAAATGA+TGG | 0.348228 | 2_4:-47714888 | None:intergenic |
| GATAAAATACACTGCTTCAT+AGG | 0.352001 | 2_4:-47715602 | None:intergenic |
| TGATGGGTTAATCTTGTGTT+TGG | 0.357672 | 2_4:-47714871 | None:intergenic |
| ATAGAATGGCTTTGTATAAC+GGG | 0.410953 | 2_4:+47715513 | Msa0331740:CDS |
| TTGTGATAAACTAAATTAAG+TGG | 0.420140 | 2_4:+47715857 | Msa0331740:three_prime_UTR |
| GATTCTCGTTGAATGAAACT+TGG | 0.436395 | 2_4:+47715567 | Msa0331740:exon |
| TGGTCAATGTAATTTAGTTA+AGG | 0.438504 | 2_4:+47715877 | Msa0331740:three_prime_UTR |
| TCAAATAACTAGTGATGAGT+TGG | 0.448071 | 2_4:-47715776 | None:intergenic |
| AATAGAATGGCTTTGTATAA+CGG | 0.457196 | 2_4:+47715512 | Msa0331740:CDS |
| TTCCAAGAATTTGAAATGAT+GGG | 0.463098 | 2_4:-47714887 | None:intergenic |
| TTGAATGAAACTTGGGAAAG+AGG | 0.491240 | 2_4:+47715575 | Msa0331740:three_prime_UTR |
| ACAAATGACTTCTCTCTCAC+GGG | 0.491614 | 2_4:+47714791 | None:intergenic |
| CTGTTGTGTGGTTGTAGTGT+GGG | 0.501190 | 2_4:+47715718 | Msa0331740:three_prime_UTR |
| TAGATTTGAAGAAAGTGTGA+AGG | 0.513088 | 2_4:+47715382 | Msa0331740:CDS |
| TGGAATTCCTGCAAATAGAA+TGG | 0.533064 | 2_4:+47715499 | Msa0331740:CDS |
| AACAAATGACTTCTCTCTCA+CGG | 0.539460 | 2_4:+47714790 | None:intergenic |
| TTTCTCAGAGGAAAAGAAGA+GGG | 0.546313 | 2_4:+47715322 | Msa0331740:intron |
| ATTCTCGTTGAATGAAACTT+GGG | 0.558587 | 2_4:+47715568 | Msa0331740:exon |
| ACTGTTGTGTGGTTGTAGTG+TGG | 0.565398 | 2_4:+47715717 | Msa0331740:three_prime_UTR |
| CATAATGTCAAATCTAGTTG+TGG | 0.615424 | 2_4:-47715751 | None:intergenic |
| AGTGAAACAACGAAAACTCG+TGG | 0.634965 | 2_4:+47715479 | Msa0331740:CDS |
| TGTTGTGTGGTTGTAGTGTG+GGG | 0.661609 | 2_4:+47715719 | Msa0331740:three_prime_UTR |
| ACACATACACAACTGTTGTG+TGG | 0.669472 | 2_4:+47715706 | Msa0331740:three_prime_UTR |
| CAAATGACTTCTCTCTCACG+GGG | 0.697931 | 2_4:+47714792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCGATATTGATATTAATTA+AGG | - | chr2_4:47715206-47715225 | None:intergenic | 15.0% |
| !! | ATCGATATTGATATTAATTA+AGG | - | chr2_4:47715206-47715225 | None:intergenic | 15.0% |
| !! | TCTACATACAAAATAAAGTA+AGG | - | chr2_4:47714995-47715014 | None:intergenic | 20.0% |
| !!! | TTACTTTATTTTGTATGTAG+AGG | + | chr2_4:47714994-47715013 | Msa0331740:intron | 20.0% |
| !! | ATATCGATATTGATATTGTT+AGG | - | chr2_4:47715111-47715130 | None:intergenic | 20.0% |
| !! | AATATCAATATCGATATTGT+CGG | + | chr2_4:47715211-47715230 | Msa0331740:intron | 20.0% |
| !! | AAAATACACACAATATAGTA+AGG | - | chr2_4:47715302-47715321 | None:intergenic | 20.0% |
| !! | TTGTGATAAACTAAATTAAG+TGG | + | chr2_4:47715857-47715876 | Msa0331740:three_prime_UTR | 20.0% |
| !! | TCTACATACAAAATAAAGTA+AGG | - | chr2_4:47714995-47715014 | None:intergenic | 20.0% |
| !!! | TTACTTTATTTTGTATGTAG+AGG | + | chr2_4:47714994-47715013 | Msa0331740:intron | 20.0% |
| !! | ATATCGATATTGATATTGTT+AGG | - | chr2_4:47715111-47715130 | None:intergenic | 20.0% |
| !! | AATATCAATATCGATATTGT+CGG | + | chr2_4:47715211-47715230 | Msa0331740:intron | 20.0% |
| !! | AAAATACACACAATATAGTA+AGG | - | chr2_4:47715302-47715321 | None:intergenic | 20.0% |
| !! | TTGTGATAAACTAAATTAAG+TGG | + | chr2_4:47715857-47715876 | Msa0331740:three_prime_UTR | 20.0% |
| !! | TTCCAAGAATTTGAAATGAT+GGG | - | chr2_4:47714890-47714909 | None:intergenic | 25.0% |
| !!! | TTTTTTATGACCTAACTCAA+CGG | - | chr2_4:47715152-47715171 | None:intergenic | 25.0% |
| !!! | AATAGAATGGCTTTGTATAA+CGG | + | chr2_4:47715512-47715531 | Msa0331740:CDS | 25.0% |
| !!! | TGAATTCTAGTTTAGTTTTG+TGG | + | chr2_4:47715672-47715691 | Msa0331740:three_prime_UTR | 25.0% |
| ! | TGGTCAATGTAATTTAGTTA+AGG | + | chr2_4:47715877-47715896 | Msa0331740:three_prime_UTR | 25.0% |
| !! | TTCCAAGAATTTGAAATGAT+GGG | - | chr2_4:47714890-47714909 | None:intergenic | 25.0% |
| !!! | TTTTTTATGACCTAACTCAA+CGG | - | chr2_4:47715152-47715171 | None:intergenic | 25.0% |
| !!! | AATAGAATGGCTTTGTATAA+CGG | + | chr2_4:47715512-47715531 | Msa0331740:CDS | 25.0% |
| !!! | TGAATTCTAGTTTAGTTTTG+TGG | + | chr2_4:47715672-47715691 | Msa0331740:three_prime_UTR | 25.0% |
| ! | TGGTCAATGTAATTTAGTTA+AGG | + | chr2_4:47715877-47715896 | Msa0331740:three_prime_UTR | 25.0% |
| AACCCATCATTTCAAATTCT+TGG | + | chr2_4:47714885-47714904 | Msa0331740:CDS | 30.0% | |
| ! | CTTCCAAGAATTTGAAATGA+TGG | - | chr2_4:47714891-47714910 | None:intergenic | 30.0% |
| ATAGTAAGGACTAAGAACTA+AGG | - | chr2_4:47715288-47715307 | None:intergenic | 30.0% | |
| !!! | TGTGTGTATTTTTTTCTCAG+AGG | + | chr2_4:47715310-47715329 | Msa0331740:intron | 30.0% |
| ! | TAGATTTGAAGAAAGTGTGA+AGG | + | chr2_4:47715382-47715401 | Msa0331740:CDS | 30.0% |
| TAGCAAAAAAAGAGAAACAG+AGG | + | chr2_4:47715426-47715445 | Msa0331740:CDS | 30.0% | |
| !! | ATAGAATGGCTTTGTATAAC+GGG | + | chr2_4:47715513-47715532 | Msa0331740:CDS | 30.0% |
| !! | TTTGTATAACGGGATTTTGA+GGG | + | chr2_4:47715523-47715542 | Msa0331740:CDS | 30.0% |
| ATTCTCGTTGAATGAAACTT+GGG | + | chr2_4:47715568-47715587 | Msa0331740:exon | 30.0% | |
| GATAAAATACACTGCTTCAT+AGG | - | chr2_4:47715605-47715624 | None:intergenic | 30.0% | |
| TCAGAGAAAAACAAAAACAG+AGG | - | chr2_4:47715645-47715664 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGTTTTTCTCTGAG+TGG | + | chr2_4:47715646-47715665 | Msa0331740:three_prime_UTR | 30.0% |
| CATAATGTCAAATCTAGTTG+TGG | - | chr2_4:47715754-47715773 | None:intergenic | 30.0% | |
| TCAAATAACTAGTGATGAGT+TGG | - | chr2_4:47715779-47715798 | None:intergenic | 30.0% | |
| ! | CATCACTAGTTATTTGAGAT+TGG | + | chr2_4:47715782-47715801 | Msa0331740:three_prime_UTR | 30.0% |
| AACCCATCATTTCAAATTCT+TGG | + | chr2_4:47714885-47714904 | Msa0331740:CDS | 30.0% | |
| ! | CTTCCAAGAATTTGAAATGA+TGG | - | chr2_4:47714891-47714910 | None:intergenic | 30.0% |
| ATAGTAAGGACTAAGAACTA+AGG | - | chr2_4:47715288-47715307 | None:intergenic | 30.0% | |
| !!! | TGTGTGTATTTTTTTCTCAG+AGG | + | chr2_4:47715310-47715329 | Msa0331740:intron | 30.0% |
| ! | TAGATTTGAAGAAAGTGTGA+AGG | + | chr2_4:47715382-47715401 | Msa0331740:CDS | 30.0% |
| TAGCAAAAAAAGAGAAACAG+AGG | + | chr2_4:47715426-47715445 | Msa0331740:CDS | 30.0% | |
| !! | ATAGAATGGCTTTGTATAAC+GGG | + | chr2_4:47715513-47715532 | Msa0331740:CDS | 30.0% |
| !! | TTTGTATAACGGGATTTTGA+GGG | + | chr2_4:47715523-47715542 | Msa0331740:CDS | 30.0% |
| ATTCTCGTTGAATGAAACTT+GGG | + | chr2_4:47715568-47715587 | Msa0331740:exon | 30.0% | |
| GATAAAATACACTGCTTCAT+AGG | - | chr2_4:47715605-47715624 | None:intergenic | 30.0% | |
| TCAGAGAAAAACAAAAACAG+AGG | - | chr2_4:47715645-47715664 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGTTTTTCTCTGAG+TGG | + | chr2_4:47715646-47715665 | Msa0331740:three_prime_UTR | 30.0% |
| CATAATGTCAAATCTAGTTG+TGG | - | chr2_4:47715754-47715773 | None:intergenic | 30.0% | |
| TCAAATAACTAGTGATGAGT+TGG | - | chr2_4:47715779-47715798 | None:intergenic | 30.0% | |
| ! | CATCACTAGTTATTTGAGAT+TGG | + | chr2_4:47715782-47715801 | Msa0331740:three_prime_UTR | 30.0% |
| GGAAAAAGCTAGATAAAGCA+TGG | - | chr2_4:47714853-47714872 | None:intergenic | 35.0% | |
| !! | TGATGGGTTAATCTTGTGTT+TGG | - | chr2_4:47714874-47714893 | None:intergenic | 35.0% |
| AGCGCAAAATTTGTGTGTTA+GGG | - | chr2_4:47714929-47714948 | None:intergenic | 35.0% | |
| ! | TTGCGCTCTTGTTTATATTC+AGG | + | chr2_4:47714942-47714961 | Msa0331740:intron | 35.0% |
| AGGTTAATCAAAAGAAGAGC+TGG | - | chr2_4:47714975-47714994 | None:intergenic | 35.0% | |
| GTTGTTCTTGACAAAGTGTA+AGG | - | chr2_4:47715182-47715201 | None:intergenic | 35.0% | |
| GTTGTTCTTGACAAAGTGTA+AGG | - | chr2_4:47715182-47715201 | None:intergenic | 35.0% | |
| ! | TTTTCTCAGAGGAAAAGAAG+AGG | + | chr2_4:47715321-47715340 | Msa0331740:intron | 35.0% |
| TTTCTCAGAGGAAAAGAAGA+GGG | + | chr2_4:47715322-47715341 | Msa0331740:intron | 35.0% | |
| TGGAATTCCTGCAAATAGAA+TGG | + | chr2_4:47715499-47715518 | Msa0331740:CDS | 35.0% | |
| TACAAAGCCATTCTATTTGC+AGG | - | chr2_4:47715509-47715528 | None:intergenic | 35.0% | |
| !! | CTTTGTATAACGGGATTTTG+AGG | + | chr2_4:47715522-47715541 | Msa0331740:CDS | 35.0% |
| GATTCTCGTTGAATGAAACT+TGG | + | chr2_4:47715567-47715586 | Msa0331740:exon | 35.0% | |
| TTGAATGAAACTTGGGAAAG+AGG | + | chr2_4:47715575-47715594 | Msa0331740:three_prime_UTR | 35.0% | |
| !!! | TCTAGTTTAGTTTTGTGGCA+AGG | + | chr2_4:47715677-47715696 | Msa0331740:three_prime_UTR | 35.0% |
| !!! | CTAGTTTAGTTTTGTGGCAA+GGG | + | chr2_4:47715678-47715697 | Msa0331740:three_prime_UTR | 35.0% |
| GGAAAAAGCTAGATAAAGCA+TGG | - | chr2_4:47714853-47714872 | None:intergenic | 35.0% | |
| !! | TGATGGGTTAATCTTGTGTT+TGG | - | chr2_4:47714874-47714893 | None:intergenic | 35.0% |
| AGCGCAAAATTTGTGTGTTA+GGG | - | chr2_4:47714929-47714948 | None:intergenic | 35.0% | |
| ! | TTGCGCTCTTGTTTATATTC+AGG | + | chr2_4:47714942-47714961 | Msa0331740:intron | 35.0% |
| AGGTTAATCAAAAGAAGAGC+TGG | - | chr2_4:47714975-47714994 | None:intergenic | 35.0% | |
| GTTGTTCTTGACAAAGTGTA+AGG | - | chr2_4:47715182-47715201 | None:intergenic | 35.0% | |
| GTTGTTCTTGACAAAGTGTA+AGG | - | chr2_4:47715182-47715201 | None:intergenic | 35.0% | |
| ! | TTTTCTCAGAGGAAAAGAAG+AGG | + | chr2_4:47715321-47715340 | Msa0331740:intron | 35.0% |
| TTTCTCAGAGGAAAAGAAGA+GGG | + | chr2_4:47715322-47715341 | Msa0331740:intron | 35.0% | |
| TGGAATTCCTGCAAATAGAA+TGG | + | chr2_4:47715499-47715518 | Msa0331740:CDS | 35.0% | |
| TACAAAGCCATTCTATTTGC+AGG | - | chr2_4:47715509-47715528 | None:intergenic | 35.0% | |
| !! | CTTTGTATAACGGGATTTTG+AGG | + | chr2_4:47715522-47715541 | Msa0331740:CDS | 35.0% |
| GATTCTCGTTGAATGAAACT+TGG | + | chr2_4:47715567-47715586 | Msa0331740:exon | 35.0% | |
| TTGAATGAAACTTGGGAAAG+AGG | + | chr2_4:47715575-47715594 | Msa0331740:three_prime_UTR | 35.0% | |
| !!! | TCTAGTTTAGTTTTGTGGCA+AGG | + | chr2_4:47715677-47715696 | Msa0331740:three_prime_UTR | 35.0% |
| !!! | CTAGTTTAGTTTTGTGGCAA+GGG | + | chr2_4:47715678-47715697 | Msa0331740:three_prime_UTR | 35.0% |
| GAGCGCAAAATTTGTGTGTT+AGG | - | chr2_4:47714930-47714949 | None:intergenic | 40.0% | |
| TACTGAAACTCACACGCATA+AGG | + | chr2_4:47715028-47715047 | Msa0331740:intron | 40.0% | |
| TCGATATTGTCCGTTGAGTT+AGG | + | chr2_4:47715139-47715158 | Msa0331740:intron | 40.0% | |
| ! | TCGATATTGTCGGTTAAGCT+AGG | + | chr2_4:47715221-47715240 | Msa0331740:intron | 40.0% |
| AGTGAAACAACGAAAACTCG+TGG | + | chr2_4:47715479-47715498 | Msa0331740:CDS | 40.0% | |
| ACACATACACAACTGTTGTG+TGG | + | chr2_4:47715706-47715725 | Msa0331740:three_prime_UTR | 40.0% | |
| GAGCGCAAAATTTGTGTGTT+AGG | - | chr2_4:47714930-47714949 | None:intergenic | 40.0% | |
| TACTGAAACTCACACGCATA+AGG | + | chr2_4:47715028-47715047 | Msa0331740:intron | 40.0% | |
| TCGATATTGTCCGTTGAGTT+AGG | + | chr2_4:47715139-47715158 | Msa0331740:intron | 40.0% | |
| ! | TCGATATTGTCGGTTAAGCT+AGG | + | chr2_4:47715221-47715240 | Msa0331740:intron | 40.0% |
| AGTGAAACAACGAAAACTCG+TGG | + | chr2_4:47715479-47715498 | Msa0331740:CDS | 40.0% | |
| ACACATACACAACTGTTGTG+TGG | + | chr2_4:47715706-47715725 | Msa0331740:three_prime_UTR | 40.0% | |
| ACACACAACTGTGTGGTACA+GGG | + | chr2_4:47715060-47715079 | Msa0331740:intron | 45.0% | |
| !! | TTTTGAGGGATCGTTTGCAC+AGG | + | chr2_4:47715537-47715556 | Msa0331740:CDS | 45.0% |
| ACTGTTGTGTGGTTGTAGTG+TGG | + | chr2_4:47715717-47715736 | Msa0331740:three_prime_UTR | 45.0% | |
| CTGTTGTGTGGTTGTAGTGT+GGG | + | chr2_4:47715718-47715737 | Msa0331740:three_prime_UTR | 45.0% | |
| TGTTGTGTGGTTGTAGTGTG+GGG | + | chr2_4:47715719-47715738 | Msa0331740:three_prime_UTR | 45.0% | |
| ACACACAACTGTGTGGTACA+GGG | + | chr2_4:47715060-47715079 | Msa0331740:intron | 45.0% | |
| !! | TTTTGAGGGATCGTTTGCAC+AGG | + | chr2_4:47715537-47715556 | Msa0331740:CDS | 45.0% |
| ACTGTTGTGTGGTTGTAGTG+TGG | + | chr2_4:47715717-47715736 | Msa0331740:three_prime_UTR | 45.0% | |
| CTGTTGTGTGGTTGTAGTGT+GGG | + | chr2_4:47715718-47715737 | Msa0331740:three_prime_UTR | 45.0% | |
| TGTTGTGTGGTTGTAGTGTG+GGG | + | chr2_4:47715719-47715738 | Msa0331740:three_prime_UTR | 45.0% | |
| CGAACTCACACACAACTGTG+TGG | + | chr2_4:47715053-47715072 | Msa0331740:intron | 50.0% | |
| CACACACAACTGTGTGGTAC+AGG | + | chr2_4:47715059-47715078 | Msa0331740:intron | 50.0% | |
| TGTGGTACAGGGTTCGAACT+CGG | + | chr2_4:47715071-47715090 | Msa0331740:intron | 50.0% | |
| CGAACTCACACACAACTGTG+TGG | + | chr2_4:47715053-47715072 | Msa0331740:intron | 50.0% | |
| CACACACAACTGTGTGGTAC+AGG | + | chr2_4:47715059-47715078 | Msa0331740:intron | 50.0% | |
| TGTGGTACAGGGTTCGAACT+CGG | + | chr2_4:47715071-47715090 | Msa0331740:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47714795 | 47715916 | 47714795 | ID=Msa0331740;Name=Msa0331740 |
| chr2_4 | mRNA | 47714795 | 47715916 | 47714795 | ID=Msa0331740-mRNA-1;Parent=Msa0331740;Name=Msa0331740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0.5|1|0|0.5|2|348|117 |
| chr2_4 | exon | 47714795 | 47714909 | 47714795 | ID=Msa0331740-mRNA-1:exon:14363;Parent=Msa0331740-mRNA-1 |
| chr2_4 | exon | 47715330 | 47715916 | 47715330 | ID=Msa0331740-mRNA-1:exon:14364;Parent=Msa0331740-mRNA-1 |
| chr2_4 | CDS | 47714795 | 47714909 | 47714795 | ID=Msa0331740-mRNA-1:cds;Parent=Msa0331740-mRNA-1 |
| chr2_4 | CDS | 47715330 | 47715568 | 47715330 | ID=Msa0331740-mRNA-1:cds;Parent=Msa0331740-mRNA-1 |
| chr2_4 | three_prime_UTR | 47715569 | 47715916 | 47715569 | ID=Msa0331740-mRNA-1:three_prime_utr;Parent=Msa0331740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
