AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807980 MtrunA17_Chr5g0422881 97.453 589 14 1 1 589 1 588 0.0 1186
Msa0807980 MtrunA17_Chr7g0255621 57.517 572 235 3 21 586 20 589 0.0 688
Msa0807980 MtrunA17_Chr7g0255601 56.424 576 239 5 18 589 26 593 0.0 669
Msa0807980 MtrunA17_Chr7g0255611 55.319 564 242 5 10 568 19 577 0.0 653
Msa0807980 MtrunA17_Chr4g0005901 46.181 563 290 9 8 567 21 573 3.89e-173 503
Msa0807980 MtrunA17_Chr7g0241741 45.255 548 293 6 21 567 22 563 2.67e-169 493
Msa0807980 MtrunA17_Chr3g0104011 43.580 553 305 6 16 566 17 564 3.47e-169 493
Msa0807980 MtrunA17_Chr8g0375311 42.478 565 319 5 4 566 23 583 4.49e-166 485
Msa0807980 MtrunA17_Chr8g0375291 43.604 555 307 5 7 559 26 576 1.63e-162 476
Msa0807980 MtrunA17_Chr3g0142101 41.796 579 311 8 11 586 25 580 5.87e-158 464
Msa0807980 MtrunA17_Chr8g0375351 40.459 566 325 6 10 567 23 584 1.50e-152 451
Msa0807980 MtrunA17_Chr5g0415791 42.334 574 308 9 13 572 21 585 3.24e-152 451
Msa0807980 MtrunA17_Chr5g0399061 40.669 568 330 5 10 573 16 580 5.36e-151 447
Msa0807980 MtrunA17_Chr8g0375341 40.285 561 323 6 15 567 28 584 1.29e-150 446
Msa0807980 MtrunA17_Chr5g0399071 41.331 571 326 7 13 578 17 583 5.58e-147 437
Msa0807980 MtrunA17_Chr3g0142091 40.972 576 323 8 10 583 15 575 1.21e-145 433
Msa0807980 MtrunA17_Chr8g0375321 39.115 565 332 7 10 566 20 580 1.59e-144 430
Msa0807980 MtrunA17_Chr8g0375361 40.426 564 330 5 5 566 23 582 5.31e-144 429
Msa0807980 MtrunA17_Chr4g0056431 40.870 575 330 5 13 580 17 588 1.57e-142 425
Msa0807980 MtrunA17_Chr8g0375331 39.502 562 334 5 7 566 10 567 2.28e-142 424
Msa0807980 MtrunA17_Chr4g0059991 37.394 591 354 7 4 584 3 587 5.82e-141 422
Msa0807980 MtrunA17_Chr1g0187241 41.091 550 310 8 21 565 26 566 3.27e-139 417
Msa0807980 MtrunA17_Chr7g0261811 39.606 558 325 7 21 574 27 576 8.05e-139 416
Msa0807980 MtrunA17_Chr4g0059971 36.991 565 344 7 10 566 25 585 4.12e-135 406
Msa0807980 MtrunA17_Chr3g0133341 39.539 564 323 6 21 579 14 564 4.54e-135 405
Msa0807980 MtrunA17_Chr7g0261881 37.522 573 348 5 12 581 18 583 3.28e-133 401
Msa0807980 MtrunA17_Chr8g0390331 39.643 560 318 11 12 562 5 553 1.13e-131 397
Msa0807980 MtrunA17_Chr1g0166711 39.748 556 326 5 12 565 16 564 8.58e-131 395
Msa0807980 MtrunA17_Chr4g0063591 39.619 578 330 7 10 580 11 576 1.70e-130 394
Msa0807980 MtrunA17_Chr3g0112671 36.667 570 343 7 12 580 24 576 1.42e-129 392
Msa0807980 MtrunA17_Chr7g0261771 37.158 549 331 6 21 564 31 570 4.92e-128 389
Msa0807980 MtrunA17_Chr1g0166791 37.410 556 340 5 12 565 15 564 8.07e-128 387
Msa0807980 MtrunA17_Chr4g0059981 35.775 587 356 9 11 581 21 602 2.50e-127 387
Msa0807980 MtrunA17_Chr4g0003761 39.162 549 316 10 22 562 31 569 7.81e-127 385
Msa0807980 MtrunA17_Chr7g0240381 35.366 574 348 7 12 581 20 574 7.68e-126 382
Msa0807980 MtrunA17_Chr2g0331511 35.243 576 357 8 17 583 17 585 3.22e-125 382
Msa0807980 MtrunA17_Chr4g0008651 36.022 558 344 8 13 568 26 572 4.71e-125 380
Msa0807980 MtrunA17_Chr3g0114501 37.613 553 338 5 15 566 16 562 1.14e-124 379
Msa0807980 MtrunA17_Chr2g0331471 35.966 595 357 10 3 588 72 651 1.22e-124 383
Msa0807980 MtrunA17_Chr2g0331521 34.192 582 352 8 18 576 19 592 6.50e-124 377
Msa0807980 MtrunA17_Chr1g0147631 36.661 581 346 8 10 579 12 581 4.81e-123 375
Msa0807980 MtrunA17_Chr7g0261791 35.355 577 358 5 12 580 20 589 9.13e-123 375
Msa0807980 MtrunA17_Chr3g0112611 34.446 569 362 7 21 586 32 592 2.47e-122 373
Msa0807980 MtrunA17_Chr5g0439381 37.674 576 322 11 16 583 23 569 6.54e-122 372
Msa0807980 MtrunA17_Chr7g0261851 36.926 566 339 8 21 581 28 580 1.23e-121 372
Msa0807980 MtrunA17_Chr4g0014871 38.407 565 316 11 12 573 21 556 1.72e-121 370
Msa0807980 MtrunA17_Chr1g0157601 36.151 556 340 8 13 562 7 553 9.83e-121 369
Msa0807980 MtrunA17_Chr1g0166741 37.453 534 315 7 12 541 18 536 1.19e-120 369
Msa0807980 MtrunA17_Chr4g0014791 37.766 564 323 8 12 573 20 557 2.10e-120 367
Msa0807980 MtrunA17_Chr2g0331481 35.462 595 361 10 3 588 8 588 4.28e-120 369
Msa0807980 MtrunA17_Chr4g0060001 35.529 577 348 8 20 580 28 596 1.38e-119 367
Msa0807980 MtrunA17_Chr8g0353031 36.538 572 323 8 18 577 15 558 1.75e-119 365
Msa0807980 MtrunA17_Chr1g0166771 39.300 514 291 9 40 548 10 507 2.61e-119 364
Msa0807980 MtrunA17_Chr4g0014781 37.258 569 316 11 12 573 20 554 2.34e-118 362
Msa0807980 MtrunA17_Chr3g0077151 35.179 560 324 7 12 566 19 544 3.67e-118 361
Msa0807980 MtrunA17_Chr8g0362781 34.622 569 347 9 12 565 23 581 5.03e-118 362
Msa0807980 MtrunA17_Chr7g0214461 35.540 574 356 7 10 580 67 629 5.09e-118 363
Msa0807980 MtrunA17_Chr4g0014841 37.213 567 317 10 12 573 20 552 1.63e-117 360
Msa0807980 MtrunA17_Chr2g0276751 37.117 555 319 9 14 565 36 563 1.68e-117 361
Msa0807980 MtrunA17_Chr8g0362711 36.189 572 339 5 14 571 18 577 5.50e-117 359
Msa0807980 MtrunA17_Chr5g0415961 36.185 561 330 6 21 565 24 572 2.75e-116 357
Msa0807980 MtrunA17_Chr8g0362801 37.782 487 283 7 109 586 1 476 2.95e-116 354
Msa0807980 MtrunA17_Chr7g0217461 36.082 582 351 11 12 583 15 585 1.09e-115 356
Msa0807980 MtrunA17_Chr4g0014801 37.390 567 318 11 12 573 20 554 1.90e-115 354
Msa0807980 MtrunA17_Chr5g0400371 36.285 576 355 8 15 584 106 675 4.07e-115 357
Msa0807980 MtrunA17_Chr7g0218851 35.409 562 351 8 4 562 29 581 4.59e-115 355
Msa0807980 MtrunA17_Chr1g0157611 36.101 554 331 9 19 562 14 554 1.27e-114 353
Msa0807980 MtrunA17_Chr1g0193391 37.300 563 325 12 21 578 17 556 1.62e-114 353
Msa0807980 MtrunA17_Chr1g0213711 34.828 580 345 11 12 581 13 569 3.90e-114 352
Msa0807980 MtrunA17_Chr7g0240271 33.043 575 370 4 17 581 20 589 3.93e-114 352
Msa0807980 MtrunA17_Chr7g0240281 34.142 577 365 5 17 583 20 591 6.54e-114 352
Msa0807980 MtrunA17_Chr2g0284701 33.562 584 370 6 11 579 22 602 9.73e-114 351
Msa0807980 MtrunA17_Chr7g0214731 35.052 582 355 10 23 589 63 636 7.13e-113 350
Msa0807980 MtrunA17_Chr2g0331461 33.838 594 371 11 3 584 8 591 2.29e-110 344
Msa0807980 MtrunA17_Chr7g0261661 37.755 490 286 7 109 588 1 481 6.65e-110 338
Msa0807980 MtrunA17_Chr1g0177591 34.783 552 329 10 17 562 38 564 1.94e-109 339
Msa0807980 MtrunA17_Chr4g0054891 34.775 578 356 8 15 584 104 668 3.71e-109 342
Msa0807980 MtrunA17_Chr1g0166731 40.652 460 264 5 108 565 9 461 3.33e-108 333
Msa0807980 MtrunA17_Chr7g0271221 36.572 566 323 10 21 581 17 551 6.28e-108 336
Msa0807980 MtrunA17_Chr1g0157621 34.791 526 329 9 42 562 1 517 5.25e-103 322
Msa0807980 MtrunA17_Chr8g0379971 32.646 582 365 6 11 565 10 591 7.63e-103 323
Msa0807980 MtrunA17_Chr8g0379991 33.688 564 334 6 42 565 1 564 3.26e-101 318
Msa0807980 MtrunA17_Chr5g0415841 34.335 466 290 6 109 565 1 459 1.12e-97 305
Msa0807980 MtrunA17_Chr4g0011471 34.078 537 335 9 35 562 30 556 4.53e-95 302
Msa0807980 MtrunA17_Chr4g0014861 37.868 441 246 8 139 573 13 431 6.06e-95 297
Msa0807980 MtrunA17_Chr3g0082631 34.989 443 275 6 142 576 30 467 3.48e-93 294
Msa0807980 MtrunA17_Chr7g0240211 32.573 482 312 4 112 586 4 479 5.36e-93 294
Msa0807980 MtrunA17_Chr7g0240131 32.573 482 312 4 112 586 4 479 7.30e-93 293
Msa0807980 MtrunA17_Chr7g0240181 32.573 482 312 4 112 586 4 479 7.62e-93 293
Msa0807980 MtrunA17_Chr7g0235521 32.359 479 311 4 112 583 4 476 5.08e-92 291
Msa0807980 MtrunA17_Chr4g0069581 35.985 528 316 10 45 566 7 518 4.65e-91 291
Msa0807980 MtrunA17_Chr2g0325951 31.504 565 351 9 13 567 11 549 4.83e-91 291
Msa0807980 MtrunA17_Chr2g0326211 32.404 574 356 10 1 567 1 549 8.93e-90 287
Msa0807980 MtrunA17_Chr2g0325961 32.327 563 350 9 13 567 11 550 1.33e-89 287
Msa0807980 MtrunA17_Chr1g0177611 35.068 442 264 8 127 562 11 435 6.31e-87 277
Msa0807980 MtrunA17_Chr4g0011041 30.645 558 366 7 16 562 31 578 7.22e-87 281
Msa0807980 MtrunA17_Chr7g0261751 34.461 473 262 7 12 443 22 487 1.16e-85 276
Msa0807980 MtrunA17_Chr7g0240151 31.328 482 300 5 112 586 4 461 1.30e-84 271
Msa0807980 MtrunA17_Chr3g0142111 43.493 292 163 2 11 301 36 326 2.23e-82 261
Msa0807980 MtrunA17_Chr1g0177631 35.294 442 263 8 127 562 11 435 1.14e-81 263
Msa0807980 MtrunA17_Chr6g0451841 29.074 540 342 6 40 565 24 536 9.63e-73 243
Msa0807980 MtrunA17_Chr7g0261731 36.890 328 195 4 12 334 22 342 4.42e-69 227
Msa0807980 MtrunA17_Chr3g0142121 41.156 294 149 6 295 586 11 282 1.73e-65 215
Msa0807980 MtrunA17_Chr3g0112631 37.671 292 179 3 294 584 3 292 5.30e-64 212
Msa0807980 MtrunA17_Chr4g0060071 38.790 281 163 3 290 570 32 303 2.32e-58 197
Msa0807980 MtrunA17_Chr7g0234381 32.967 455 266 11 108 562 3 418 4.40e-56 194
Msa0807980 MtrunA17_Chr7g0234151 32.308 455 269 9 108 562 3 418 1.22e-55 193
Msa0807980 MtrunA17_Chr7g0234181 32.151 451 267 10 112 562 2 413 5.38e-54 189
Msa0807980 MtrunA17_Chr7g0261721 37.209 215 130 3 367 581 5 214 4.82e-43 154
Msa0807980 MtrunA17_Chr3g0112651 38.674 181 105 3 108 288 21 195 8.89e-35 130
Msa0807980 MtrunA17_Chr1g0147591 34.343 198 113 5 151 339 11 200 3.49e-33 125
Msa0807980 MtrunA17_Chr2g0326221 30.992 242 136 4 326 567 15 225 4.30e-30 118
Msa0807980 MtrunA17_Chr4g0060061 40.323 124 74 0 129 252 5 128 1.16e-26 105
Msa0807980 MtrunA17_Chr7g0261831 32.500 160 100 3 249 406 1 154 1.40e-18 84.7
Msa0807980 MtrunA17_Chr8g0362791 48.052 77 40 0 26 102 41 117 2.22e-17 79.3
Msa0807980 MtrunA17_Chr7g0261671 37.647 85 53 0 21 105 32 116 1.64e-15 73.2
Msa0807980 MtrunA17_Chr4g0014851 41.489 94 55 0 12 105 21 114 2.34e-15 73.9
Msa0807980 MtrunA17_Chr1g0147581 36.885 122 70 4 418 539 2 116 1.54e-14 70.1
Msa0807980 MtrunA17_Chr3g0112661 32.407 108 73 0 11 118 21 128 4.42e-14 69.7
Msa0807980 MtrunA17_Chr1g0166721 36.471 85 54 0 21 105 25 109 5.85e-14 69.7
Msa0807980 MtrunA17_Chr3g0082621 43.478 69 39 0 37 105 2 70 6.40e-13 64.7
Msa0807980 MtrunA17_Chr8g0382591 36.111 108 60 4 294 394 3 108 1.39e-12 65.5
Msa0807980 MtrunA17_Chr7g0240141 34.483 87 57 0 17 103 23 109 3.65e-11 60.8
Msa0807980 MtrunA17_Chr5g0415851 44.776 67 37 0 36 102 7 73 9.61e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807980 AT1G68570.1 76.232 568 132 1 13 577 13 580 0.0 894
Msa0807980 AT1G68570.2 76.923 546 123 1 35 577 5 550 0.0 869
Msa0807980 AT3G54140.1 44.920 561 300 6 8 566 11 564 2.30e-173 504
Msa0807980 AT3G54140.2 44.920 561 300 6 8 566 11 564 2.30e-173 504
Msa0807980 AT5G01180.2 45.652 552 292 6 21 570 23 568 8.82e-172 499
Msa0807980 AT5G01180.3 45.652 552 292 6 21 570 23 568 8.82e-172 499
Msa0807980 AT5G01180.1 45.652 552 292 6 21 570 23 568 8.82e-172 499
Msa0807980 AT2G02040.1 43.784 555 304 6 15 566 33 582 3.08e-162 476
Msa0807980 AT1G62200.1 43.455 550 295 6 16 560 45 583 6.96e-155 457
Msa0807980 AT1G69870.1 40.830 578 327 8 17 586 45 615 2.68e-150 446
Msa0807980 AT1G62200.2 41.278 579 295 7 16 560 45 612 2.93e-148 441
Msa0807980 AT1G62200.3 41.278 579 295 7 16 560 59 626 5.71e-148 441
Msa0807980 AT1G18880.1 39.041 584 336 10 10 579 4 581 5.39e-141 421
Msa0807980 AT2G26690.1 41.003 578 315 8 10 581 11 568 2.32e-140 419
Msa0807980 AT3G16180.1 38.860 579 330 10 21 584 21 590 5.93e-139 416
Msa0807980 AT1G52190.1 38.214 560 324 8 17 562 15 566 5.26e-138 414
Msa0807980 AT2G26690.2 41.924 551 294 8 37 581 5 535 2.07e-137 411
Msa0807980 AT5G46040.1 38.502 574 344 4 12 583 16 582 5.10e-137 411
Msa0807980 AT5G46050.1 39.564 551 323 5 18 565 21 564 6.51e-137 411
Msa0807980 AT2G02020.1 38.779 557 300 8 11 567 30 545 1.43e-136 409
Msa0807980 AT1G12110.1 38.754 578 340 7 15 585 19 589 2.75e-134 404
Msa0807980 AT2G26690.3 41.805 543 290 8 45 581 1 523 4.20e-134 402
Msa0807980 AT5G62680.1 36.256 593 357 9 7 582 27 615 5.49e-130 394
Msa0807980 AT3G47960.1 37.705 549 329 6 26 565 64 608 8.53e-128 389
Msa0807980 AT1G59740.1 37.004 554 337 4 10 560 28 572 1.04e-127 387
Msa0807980 AT3G21670.1 38.966 580 321 8 10 578 16 573 8.93e-124 377
Msa0807980 AT3G54450.1 35.529 577 342 7 12 583 1 552 9.44e-124 376
Msa0807980 AT1G27080.1 38.768 552 316 9 21 565 12 548 2.10e-123 376
Msa0807980 AT3G53960.1 36.477 562 339 9 13 568 27 576 1.26e-122 375
Msa0807980 AT1G33440.1 37.148 568 329 8 23 583 38 584 5.86e-121 370
Msa0807980 AT5G13400.1 35.879 563 348 7 23 577 64 621 5.91e-120 369
Msa0807980 AT2G02020.2 36.804 557 290 11 11 567 30 524 6.84e-120 365
Msa0807980 AT2G40460.1 37.132 544 329 6 23 565 24 555 1.23e-119 366
Msa0807980 AT1G27040.2 37.568 551 322 7 21 564 21 556 4.33e-119 364
Msa0807980 AT1G27040.1 37.568 551 322 7 21 564 25 560 6.87e-119 364
Msa0807980 AT2G37900.1 35.599 559 342 7 12 568 27 569 8.69e-119 364
Msa0807980 AT1G69850.1 36.720 561 337 6 21 566 23 580 2.12e-118 363
Msa0807980 AT1G22540.1 37.024 551 321 6 21 568 28 555 1.03e-115 355
Msa0807980 AT5G28470.2 36.283 565 337 10 17 570 9 561 1.46e-115 355
Msa0807980 AT1G27040.3 37.803 537 312 7 35 564 7 528 1.47e-115 354
Msa0807980 AT1G27080.2 39.499 519 292 9 54 565 3 506 2.21e-114 351
Msa0807980 AT5G46050.2 39.869 459 267 4 109 565 1 452 6.09e-113 345
Msa0807980 AT5G28470.1 36.106 565 336 11 17 570 9 559 1.20e-112 348
Msa0807980 AT1G32450.1 36.661 581 348 11 16 583 30 603 9.13e-112 347
Msa0807980 AT1G72140.1 34.099 566 329 9 11 566 22 553 5.13e-110 341
Msa0807980 AT1G72125.1 34.513 565 345 7 10 569 16 560 7.08e-110 340
Msa0807980 AT2G37900.2 36.040 505 305 7 66 568 2 490 5.21e-109 336
Msa0807980 AT4G21680.1 37.766 564 332 9 12 564 17 572 8.38e-109 338
Msa0807980 AT1G69860.1 36.430 549 330 8 21 565 16 549 3.80e-108 336
Msa0807980 AT1G22570.1 34.683 568 341 10 10 568 17 563 1.24e-107 335
Msa0807980 AT1G22570.2 35.490 541 319 10 37 568 7 526 1.16e-105 328
Msa0807980 AT1G72120.1 33.511 564 346 8 10 568 16 555 6.18e-105 328
Msa0807980 AT3G45650.1 33.962 583 348 12 7 583 6 557 4.30e-104 325
Msa0807980 AT1G22550.1 33.510 567 348 8 10 568 17 562 4.43e-104 325
Msa0807980 AT5G19640.1 33.514 555 342 11 24 575 60 590 5.39e-100 316
Msa0807980 AT3G45650.2 32.512 609 348 13 7 583 6 583 3.02e-98 311
Msa0807980 AT1G72130.1 33.333 564 325 10 8 566 17 534 1.94e-96 305
Msa0807980 AT3G45660.1 32.348 575 353 12 14 583 13 556 1.06e-95 303
Msa0807980 AT3G45660.3 32.348 575 353 12 14 583 13 556 1.06e-95 303
Msa0807980 AT3G45660.2 32.517 572 351 12 14 580 34 575 1.92e-95 303
Msa0807980 AT5G62730.1 35.116 561 325 11 21 568 54 588 2.10e-95 304
Msa0807980 AT3G45720.1 31.028 564 356 10 23 580 19 555 2.48e-95 303
Msa0807980 AT3G45710.1 32.112 573 346 12 17 579 15 554 6.51e-95 301
Msa0807980 AT5G62730.2 35.273 550 317 11 32 568 6 529 1.64e-93 297
Msa0807980 AT3G45680.1 32.810 573 350 14 13 580 10 552 7.13e-93 296
Msa0807980 AT3G45700.1 31.851 562 351 12 19 579 12 542 6.22e-90 288
Msa0807980 AT3G25260.1 33.453 556 320 14 10 562 7 515 2.18e-85 275
Msa0807980 AT3G45690.1 30.249 562 323 14 23 580 18 514 1.10e-81 266
Msa0807980 AT1G72130.2 34.396 439 253 8 133 566 8 416 6.18e-80 258
Msa0807980 AT1G72130.3 34.396 439 253 8 133 566 8 416 6.18e-80 258
Msa0807980 AT5G14940.1 28.092 566 345 11 40 581 24 551 1.02e-79 261
Msa0807980 AT3G25280.1 32.379 559 328 11 10 562 7 521 1.65e-79 260
Msa0807980 AT3G01350.1 28.120 569 347 12 40 578 24 560 7.15e-75 249
Msa0807980 AT2G38100.2 26.257 537 344 13 54 581 5 498 5.52e-46 170
Msa0807980 AT2G38100.1 26.257 537 344 13 54 581 21 514 1.25e-45 169
Msa0807980 AT2G38100.3 26.257 537 344 13 54 581 27 520 2.10e-45 168
Msa0807980 AT5G11570.1 33.852 257 155 5 307 562 234 476 3.87e-39 150
Msa0807980 AT5G11570.1 37.615 218 125 3 24 236 14 225 5.73e-35 138

Find 156 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTAGCAGCTTTGGTTAA+TGG 0.197024 5_3:-31530214 None:intergenic
CTATATATTTAGGTATTTAA+AGG 0.229289 5_3:-31529685 None:intergenic
TTCCTTCCGGGTTCAAGTTC+CGG 0.272705 5_3:-31532314 None:intergenic
CATTAAATGACTATATATTT+AGG 0.276922 5_3:-31529695 None:intergenic
TAATCCCAATCTCAGTGTTT+TGG 0.287880 5_3:+31535856 Msa0807980:CDS
ATGGATCTGAATTTGCTTAT+AGG 0.288804 5_3:-31536195 None:intergenic
GAACTATATCAGTACACTTT+TGG 0.289172 5_3:+31536016 Msa0807980:CDS
CTTTATGAGTTGCTTAGATT+TGG 0.289685 5_3:+31536302 Msa0807980:three_prime_UTR
CGGGTAAACGGGCTTCCTTC+CGG 0.293108 5_3:-31532327 None:intergenic
AGTGAGAGTGTTAGCAGCTT+TGG 0.308153 5_3:-31530221 None:intergenic
TAGGTGTCTGTTCATAGTTT+TGG 0.308975 5_3:-31535574 None:intergenic
GTTGGGTGGGGATGGGGCCT+TGG 0.309152 5_3:+31532231 Msa0807980:CDS
TAATCAGGATGGGACCAATA+TGG 0.312169 5_3:+31535490 Msa0807980:CDS
GGGTAAACGGGCTTCCTTCC+GGG 0.322366 5_3:-31532326 None:intergenic
TGCTGGGATTTCGAATGATT+TGG 0.337859 5_3:-31535598 None:intergenic
ATCTCAATAATTGCATTCAT+TGG 0.339608 5_3:+31532276 Msa0807980:CDS
GTGCCACAATATAGCCTTCA+TGG 0.348499 5_3:+31535882 Msa0807980:CDS
CAAATTCAGATCCATCATAA+AGG 0.350480 5_3:+31536203 Msa0807980:CDS
TATATATTTAGGTATTTAAA+GGG 0.356438 5_3:-31529684 None:intergenic
ACCTTTACAAGTCGGGTAAA+CGG 0.357594 5_3:-31532339 None:intergenic
TGATATAACAATGTAGAGTT+AGG 0.358534 5_3:-31532402 None:intergenic
CAAAGCATACCAAAGATAAA+AGG 0.360146 5_3:-31529805 None:intergenic
AATGTAGAGTTAGGCACTTT+TGG 0.363597 5_3:-31532393 None:intergenic
GTGAGCTTACTTTAGCTTTG+TGG 0.367427 5_3:+31536414 Msa0807980:three_prime_UTR
CGAGTGGCTCGTAGATTAAC+TGG 0.370595 5_3:+31535690 Msa0807980:CDS
ATATGAAAACACCAGACTTA+TGG 0.370617 5_3:+31535427 Msa0807980:CDS
AATTACTATCTGGTAAATAA+TGG 0.372944 5_3:-31530335 None:intergenic
GTTGTCCTGTACTAGCTTCC+TGG 0.376790 5_3:-31532002 None:intergenic
TTGGTGGATATCGACTTTAC+CGG 0.381435 5_3:+31532295 Msa0807980:CDS
TTTATATTCAAGACAATGTT+GGG 0.387510 5_3:+31532214 Msa0807980:CDS
CCCTTGTTGAGATTATTATC+AGG 0.388726 5_3:-31536089 None:intergenic
GGATTTCGAATGATTTGGTT+AGG 0.389784 5_3:-31535593 None:intergenic
GACAATGTTGGGTGGGGATG+GGG 0.392224 5_3:+31532225 Msa0807980:CDS
CGACCCTGCGTGGTAGCGTT+TGG 0.399578 5_3:+31532078 Msa0807980:CDS
ATGTACTGCAAAATGAATAC+AGG 0.404474 5_3:+31529715 Msa0807980:CDS
CTTGATGCATCAATAACATT+AGG 0.404501 5_3:+31532435 Msa0807980:CDS
CCTTTACAAGTCGGGTAAAC+GGG 0.408412 5_3:-31532338 None:intergenic
ACAAGCCAAAACACTGAGAT+TGG 0.409770 5_3:-31535861 None:intergenic
AAATTCAGATCCATCATAAA+GGG 0.410856 5_3:+31536204 Msa0807980:CDS
TAAGACCACCACCTTGTAAA+GGG 0.412663 5_3:+31531968 Msa0807980:CDS
AACTGTTATCCCCTTTATGA+TGG 0.416802 5_3:-31536214 None:intergenic
AGGAATTGAAATCAATAATC+AGG 0.426766 5_3:+31535475 Msa0807980:CDS
GAGTTGCTTAGATTTGGATT+TGG 0.439025 5_3:+31536308 Msa0807980:three_prime_UTR
AAGTTTACTGCAGGGCCTAA+TGG 0.441477 5_3:+31536053 Msa0807980:CDS
TAATCTCAACAAGGGGAAGT+TGG 0.443222 5_3:+31536097 Msa0807980:CDS
AAGACAATGTTGGGTGGGGA+TGG 0.443676 5_3:+31532223 Msa0807980:CDS
AGACAATGTTGGGTGGGGAT+GGG 0.446260 5_3:+31532224 Msa0807980:CDS
CCCGTTTACCCGACTTGTAA+AGG 0.447423 5_3:+31532338 Msa0807980:CDS
GAGGGAGAAAGTGCCTTGTT+GGG 0.453743 5_3:-31535544 None:intergenic
ATGGGACCAATATGGGCATC+AGG 0.463348 5_3:+31535498 Msa0807980:CDS
CTACTAAGTGCACTCGGATC+GGG 0.463936 5_3:+31532048 Msa0807980:CDS
AGAATGCCTGATGCCCATAT+TGG 0.472545 5_3:-31535504 None:intergenic
GGAGGGAGAAAGTGCCTTGT+TGG 0.480436 5_3:-31535545 None:intergenic
TACTGAGAAGTTAGCAGTGG+TGG 0.482433 5_3:+31530144 Msa0807980:CDS
AGCCGATCAATTCGATGAAT+CGG 0.483039 5_3:+31532101 Msa0807980:CDS
GTTTATATTCAAGACAATGT+TGG 0.483529 5_3:+31532213 Msa0807980:CDS
CATACCTCCTCCCCTTTACA+AGG 0.486223 5_3:-31531979 None:intergenic
ATTATTATCAGGAAGCCAAT+TGG 0.486251 5_3:-31536078 None:intergenic
AATCAGGATGGGACCAATAT+GGG 0.488017 5_3:+31535491 Msa0807980:CDS
GCATGTGAAGCTGTGTTGTT+AGG 0.489463 5_3:-31530192 None:intergenic
GGAAGCCAATTGGTACCATT+AGG 0.489490 5_3:-31536068 None:intergenic
GTTGATAGTCTCCATAAGTC+TGG 0.494596 5_3:-31535438 None:intergenic
CAAGGTGGTGGTCTTAATTG+TGG 0.495509 5_3:-31531961 None:intergenic
CAATTCCTCCACTCTGTGAA+CGG 0.495767 5_3:-31535460 None:intergenic
AATACCGACATGGACCCTGC+TGG 0.496239 5_3:-31535615 None:intergenic
GCTAACACTCTCACTAACTT+TGG 0.499426 5_3:+31530229 Msa0807980:CDS
TTTGAAAAGATGGAGAAGAA+TGG 0.500111 5_3:+31529739 Msa0807980:CDS
TCAAGCTTGACACCATTGCT+TGG 0.502976 5_3:+31530259 Msa0807980:CDS
TCAATAATTGCATTCATTGG+TGG 0.503989 5_3:+31532279 Msa0807980:CDS
GATGCATCAATAACATTAGG+AGG 0.506441 5_3:+31532438 Msa0807980:CDS
ATAACCTTCCTTCACAGAAT+GGG 0.507387 5_3:+31535726 Msa0807980:CDS
ACAATATAGCCTTCATGGAA+TGG 0.508930 5_3:+31535887 Msa0807980:CDS
CACACATACCTTTACAAGTC+GGG 0.509381 5_3:-31532346 None:intergenic
GCAGTACTTGTCATACTCTC+AGG 0.513223 5_3:-31535960 None:intergenic
TTCCTTCACAGAATGGGCAT+TGG 0.514368 5_3:+31535732 Msa0807980:CDS
AAATCATTCGAAATCCCAGC+AGG 0.515566 5_3:+31535600 Msa0807980:CDS
CAGGGCCTAATGGTACCAAT+TGG 0.515633 5_3:+31536063 Msa0807980:CDS
TATTCAAGACAATGTTGGGT+GGG 0.515890 5_3:+31532218 Msa0807980:CDS
TTGGTACACAAGTTTACTGC+AGG 0.516278 5_3:+31536044 Msa0807980:CDS
AACACTCTCACTAACTTTGG+TGG 0.517057 5_3:+31530232 Msa0807980:CDS
ATTCAAGACAATGTTGGGTG+GGG 0.518324 5_3:+31532219 Msa0807980:CDS
GAAACGAAAGAAGGTAGCTA+TGG 0.519384 5_3:+31535803 Msa0807980:CDS
TTAAGACCACCACCTTGTAA+AGG 0.521958 5_3:+31531967 Msa0807980:CDS
CTATCATTATATAGTGTACA+AGG 0.522753 5_3:+31536382 Msa0807980:three_prime_UTR
TAAAGGGGAGGAGGTATGCC+AGG 0.523753 5_3:+31531984 Msa0807980:CDS
ATGGTAGTAATCATACTAGA+AGG 0.525447 5_3:+31529758 Msa0807980:CDS
TATAACCTTCCTTCACAGAA+TGG 0.529956 5_3:+31535725 Msa0807980:CDS
CAAGCCAAAACACTGAGATT+GGG 0.530147 5_3:-31535860 None:intergenic
TCCTCCCCTTTACAAGGTGG+TGG 0.535350 5_3:-31531973 None:intergenic
TTTGGACATCAATTTCTCTA+GGG 0.537470 5_3:+31535994 Msa0807980:CDS
TCTACTAAGTGCACTCGGAT+CGG 0.539272 5_3:+31532047 Msa0807980:CDS
TATGATTAGTTTGACTATGT+CGG 0.540452 5_3:+31531930 Msa0807980:CDS
ACTGAGAAGTTAGCAGTGGT+GGG 0.545206 5_3:+31530145 Msa0807980:CDS
GAGATAAACATTGCCAATGT+GGG 0.548246 5_3:-31532258 None:intergenic
TTGCCAATGTGGGGATTCCA+AGG 0.550082 5_3:-31532248 None:intergenic
CTGGTAAATAATGGAAGCAA+CGG 0.552887 5_3:-31530326 None:intergenic
CTAAGTGCACTCGGATCGGG+TGG 0.559356 5_3:+31532051 Msa0807980:CDS
ATTGAAATCAATAATCAGGA+TGG 0.565434 5_3:+31535479 Msa0807980:CDS
ATACCGACATGGACCCTGCT+GGG 0.565654 5_3:-31535614 None:intergenic
CGTCGAAATGAAACGAAAGA+AGG 0.565947 5_3:+31535794 Msa0807980:CDS
TTGAAATCAATAATCAGGAT+GGG 0.570095 5_3:+31535480 Msa0807980:CDS
CAGTTAATCTACGAGCCACT+CGG 0.573812 5_3:-31535689 None:intergenic
TGAGATAAACATTGCCAATG+TGG 0.576745 5_3:-31532259 None:intergenic
GATTAAGACACGGTCATAGA+GGG 0.581651 5_3:-31535667 None:intergenic
GGTGAAGAGCATTGTGAGGA+TGG 0.581690 5_3:-31535640 None:intergenic
GGATTAAGACACGGTCATAG+AGG 0.582064 5_3:-31535668 None:intergenic
GCTCCAAACGCTACCACGCA+GGG 0.582688 5_3:-31532081 None:intergenic
TCCTGATAATAATCTCAACA+AGG 0.583651 5_3:+31536088 Msa0807980:CDS
ACTTTACCGGAACTTGAACC+CGG 0.583922 5_3:+31532308 Msa0807980:CDS
GTATTTAAAGGGAAAGCTTG+TGG 0.586359 5_3:-31529673 None:intergenic
GGCTCCAAACGCTACCACGC+AGG 0.589118 5_3:-31532082 None:intergenic
GAAATGAAAGCACCAAGCAA+TGG 0.589853 5_3:-31530271 None:intergenic
ATCCGATTCATCGAATTGAT+CGG 0.590174 5_3:-31532103 None:intergenic
GTATGCCAGGAAGCTAGTAC+AGG 0.596922 5_3:+31531997 Msa0807980:CDS
ACCACCTTGTAAAGGGGAGG+AGG 0.597387 5_3:+31531975 Msa0807980:CDS
CAAGGCAGCAATAGTGACAG+AGG 0.600878 5_3:+31535398 Msa0807980:CDS
AAGCTTCAGCCATTCCATGA+AGG 0.601801 5_3:-31535896 None:intergenic
TTCGACGAATCCAGCAACGA+AGG 0.608035 5_3:-31535778 None:intergenic
TACCGGAACTTGAACCCGGA+AGG 0.608598 5_3:+31532312 Msa0807980:CDS
AACCAATGCCCATTCTGTGA+AGG 0.612186 5_3:-31535734 None:intergenic
GGGCCTTGGAATCCCCACAT+TGG 0.619404 5_3:+31532245 Msa0807980:CDS
CCTGATAATAATCTCAACAA+GGG 0.620463 5_3:+31536089 Msa0807980:CDS
AGATAAACATTGCCAATGTG+GGG 0.622888 5_3:-31532257 None:intergenic
AATGCCCATTCTGTGAAGGA+AGG 0.627203 5_3:-31535730 None:intergenic
GAGTATGACAAGTACTGCAA+TGG 0.633328 5_3:+31535965 Msa0807980:CDS
CTGATAATAATCTCAACAAG+GGG 0.635592 5_3:+31536090 Msa0807980:CDS
ATATTCAAGACAATGTTGGG+TGG 0.637995 5_3:+31532217 Msa0807980:CDS
ACCACCACCTTGTAAAGGGG+AGG 0.640217 5_3:+31531972 Msa0807980:CDS
AAGACCACCACCTTGTAAAG+GGG 0.641620 5_3:+31531969 Msa0807980:CDS
TGCAGTAAACTTGTGTACCA+AGG 0.643581 5_3:-31536042 None:intergenic
CAAACGCTACCACGCAGGGT+CGG 0.644069 5_3:-31532077 None:intergenic
ATTCCATGAAGGCTATATTG+TGG 0.645084 5_3:-31535885 None:intergenic
ATGCATCAATAACATTAGGA+GGG 0.645194 5_3:+31532439 Msa0807980:CDS
GACACGGTCATAGAGGGCAA+TGG 0.646638 5_3:-31535661 None:intergenic
AATTCAGATCCATCATAAAG+GGG 0.650003 5_3:+31536205 Msa0807980:CDS
ACCTCCTCCCCTTTACAAGG+TGG 0.650601 5_3:-31531976 None:intergenic
TCACTTCTACTAAGTGCACT+CGG 0.655705 5_3:+31532042 Msa0807980:CDS
ATCACAGCATATGCCCAACA+AGG 0.657237 5_3:+31535531 Msa0807980:CDS
GGGTGGGATCCGACCCTGCG+TGG 0.657844 5_3:+31532068 Msa0807980:CDS
ACTATCAACCGTTCACAGAG+TGG 0.658932 5_3:+31535452 Msa0807980:CDS
AGATTAACTGGACTCGACCG+TGG 0.660577 5_3:+31535702 Msa0807980:CDS
CATGGGAACAGCTATACTTG+TGG 0.666916 5_3:+31532176 Msa0807980:CDS
AAGAAGGTAGCTATGGAGCA+CGG 0.668396 5_3:+31535810 Msa0807980:CDS
ATCAACCGTTCACAGAGTGG+AGG 0.671622 5_3:+31535455 Msa0807980:CDS
CCACACATACCTTTACAAGT+CGG 0.672041 5_3:-31532347 None:intergenic
TGGTACACAAGTTTACTGCA+GGG 0.672147 5_3:+31536045 Msa0807980:CDS
TAAGTGCACTCGGATCGGGT+GGG 0.676292 5_3:+31532052 Msa0807980:CDS
TGACCGTGTCTTAATCCGAG+TGG 0.677752 5_3:+31535674 Msa0807980:CDS
CCGACTTGTAAAGGTATGTG+TGG 0.680992 5_3:+31532347 Msa0807980:CDS
AATCCCAGCAGGGTCCATGT+CGG 0.687979 5_3:+31535611 Msa0807980:CDS
AATCATTCGAAATCCCAGCA+GGG 0.692056 5_3:+31535601 Msa0807980:CDS
GGTTACTGAGAAGTTAGCAG+TGG 0.712724 5_3:+31530141 Msa0807980:CDS
CAATGGTGAAGAGCATTGTG+AGG 0.730767 5_3:-31535644 None:intergenic
GAGGATGGTGAATACCGACA+TGG 0.733860 5_3:-31535625 None:intergenic
GAGCCACTCGGATTAAGACA+CGG 0.745498 5_3:-31535677 None:intergenic
TGTGAAGGAAGGTTATACCA+CGG 0.749506 5_3:-31535719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTAGGTATTTAAA+GGG - chr5_3:31529687-31529706 None:intergenic 10.0%
!! AATTTAATATAAAAGAGTTA+GGG - chr5_3:31529834-31529853 None:intergenic 10.0%
!! AAATTTAATATAAAAGAGTT+AGG - chr5_3:31529835-31529854 None:intergenic 10.0%
!!! GTTTAATATAAAATTCATTT+TGG - chr5_3:31530645-31530664 None:intergenic 10.0%
!! TCAAATAAAAAAAAATGTAA+GGG - chr5_3:31531248-31531267 None:intergenic 10.0%
!! TATATTATTATATACGTAAT+AGG - chr5_3:31531380-31531399 None:intergenic 10.0%
!! AACATACATATTAAAAAAAA+TGG - chr5_3:31531809-31531828 None:intergenic 10.0%
!! ATAAATAAAATTCACTATTT+AGG - chr5_3:31532960-31532979 None:intergenic 10.0%
!! TAATATATTTATTTAAGTAG+AGG + chr5_3:31533851-31533870 Msa0807980:intron 10.0%
!!! TTTGTTTTTTTTTACTAAAT+AGG + chr5_3:31533901-31533920 Msa0807980:intron 10.0%
!! TATAATAATGATGATTAATT+TGG - chr5_3:31534088-31534107 None:intergenic 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG + chr5_3:31534789-31534808 Msa0807980:intron 10.0%
!! TATATCTATACTATATATAA+AGG - chr5_3:31534866-31534885 None:intergenic 10.0%
!!! AGTTTAAGTAAAATTTTATA+AGG + chr5_3:31536271-31536290 Msa0807980:exon 10.0%
!! CTATATATTTAGGTATTTAA+AGG - chr5_3:31529688-31529707 None:intergenic 15.0%
!! CATTAAATGACTATATATTT+AGG - chr5_3:31529698-31529717 None:intergenic 15.0%
!!! TTTTTCAAAATTATTAGCTT+CGG + chr5_3:31529996-31530015 Msa0807980:intron 15.0%
!! ATGTAAAATCATAATAAAGA+AGG - chr5_3:31530390-31530409 None:intergenic 15.0%
!!! AAATGAATAGTTTTTTTTCA+TGG + chr5_3:31531002-31531021 Msa0807980:intron 15.0%
!! CTCAAATAAAAAAAAATGTA+AGG - chr5_3:31531249-31531268 None:intergenic 15.0%
!!! CTTACATTTTTTTTTATTTG+AGG + chr5_3:31531247-31531266 Msa0807980:intron 15.0%
!! AGAAATTGTATTATATGTAA+AGG - chr5_3:31531283-31531302 None:intergenic 15.0%
!! TATATAATAATATATTGTCC+TGG + chr5_3:31531386-31531405 Msa0807980:intron 15.0%
!!! TTTTTGATTACATTGTTATT+TGG - chr5_3:31531452-31531471 None:intergenic 15.0%
!! GAATAAAAAAACTTTCAATA+AGG - chr5_3:31531872-31531891 None:intergenic 15.0%
!!! TTTTGTGATTTTTAAAAATC+AGG + chr5_3:31531906-31531925 Msa0807980:intron 15.0%
!!! TTTGTGATTTTTAAAAATCA+GGG + chr5_3:31531907-31531926 Msa0807980:intron 15.0%
!! GTATTAAAAAACATTATGAA+AGG - chr5_3:31532533-31532552 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+TGG - chr5_3:31532581-31532600 None:intergenic 15.0%
!! ATAAGTAAAATTCACTATTT+AGG - chr5_3:31532679-31532698 None:intergenic 15.0%
!! TTCAATAATTGAGTTAATAA+AGG + chr5_3:31532779-31532798 Msa0807980:intron 15.0%
!! TTCAATAATTGAGTTAATAA+AGG + chr5_3:31532779-31532798 Msa0807980:intron 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr5_3:31533318-31533337 Msa0807980:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr5_3:31533319-31533338 Msa0807980:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_3:31533383-31533402 Msa0807980:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr5_3:31533384-31533403 Msa0807980:intron 15.0%
!! TCATATCAAATCTTTAAATT+CGG + chr5_3:31533523-31533542 Msa0807980:intron 15.0%
!! ACTAATCATTACTAAAAATA+TGG + chr5_3:31534312-31534331 Msa0807980:intron 15.0%
!! TTATATATACTAGCAAAAAA+AGG + chr5_3:31534427-31534446 Msa0807980:intron 15.0%
!! TATATATACTAGCAAAAAAA+GGG + chr5_3:31534428-31534447 Msa0807980:intron 15.0%
!!! AGTTTGTTATACTTTTTAAA+TGG + chr5_3:31534647-31534666 Msa0807980:intron 15.0%
!!! TTATACTTTTTAAATGGTAA+TGG + chr5_3:31534653-31534672 Msa0807980:intron 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG + chr5_3:31534788-31534807 Msa0807980:intron 15.0%
!!! TCTTTTATAATTTTCTGATT+TGG - chr5_3:31534994-31535013 None:intergenic 15.0%
!! AAGTTTAATTGAAAAAATAG+AGG - chr5_3:31535294-31535313 None:intergenic 15.0%
!! TATTACAATAACTTTAAACA+AGG - chr5_3:31535327-31535346 None:intergenic 15.0%
!!! ATTTTTAATTGATGGTTTTT+AGG + chr5_3:31536477-31536496 Msa0807980:three_prime_UTR 15.0%
!!! TTTTTAATTGATGGTTTTTA+GGG + chr5_3:31536478-31536497 Msa0807980:three_prime_UTR 15.0%
!! AATTACTATCTGGTAAATAA+TGG - chr5_3:31530338-31530357 None:intergenic 20.0%
!!! TGAAATGGATTTTTTATTTG+AGG + chr5_3:31530773-31530792 Msa0807980:intron 20.0%
!!! GAAATGGATTTTTTATTTGA+GGG + chr5_3:31530774-31530793 Msa0807980:intron 20.0%
!!! AAATGGATTTTTTATTTGAG+GGG + chr5_3:31530775-31530794 Msa0807980:intron 20.0%
!!! AATATTTTATGAGAGTACAT+GGG - chr5_3:31530828-31530847 None:intergenic 20.0%
!!! AAATATTTTATGAGAGTACA+TGG - chr5_3:31530829-31530848 None:intergenic 20.0%
!!! AACTATTCATTTTCATGAAT+GGG - chr5_3:31530994-31531013 None:intergenic 20.0%
!!! AAACTATTCATTTTCATGAA+TGG - chr5_3:31530995-31531014 None:intergenic 20.0%
!! AAAATGACAATCAAGATTTA+CGG - chr5_3:31531055-31531074 None:intergenic 20.0%
!! AATAAAAAAAAATGTAAGGG+TGG - chr5_3:31531245-31531264 None:intergenic 20.0%
!! AATTGTATTATATGTAAAGG+TGG - chr5_3:31531280-31531299 None:intergenic 20.0%
!!! TTCACAGTCTAAAATATTTT+TGG - chr5_3:31531551-31531570 None:intergenic 20.0%
!!! AAAAATATTTTAGACTGTGA+AGG + chr5_3:31531550-31531569 Msa0807980:intron 20.0%
!! GATTAATCATCATTAAATAG+TGG - chr5_3:31531850-31531869 None:intergenic 20.0%
!! TTTATATTCAAGACAATGTT+GGG + chr5_3:31532214-31532233 Msa0807980:CDS 20.0%
!!! GATGTATTTAGTTCATAATA+TGG + chr5_3:31532627-31532646 Msa0807980:intron 20.0%
!! TGGAAGATATTAAAAAATTG+AGG + chr5_3:31532820-31532839 Msa0807980:intron 20.0%
!!! GATGTATTTAGTTCATAATA+TGG + chr5_3:31532627-31532646 Msa0807980:intron 20.0%
!! TGGAAGATATTAAAAAATTG+AGG + chr5_3:31532820-31532839 Msa0807980:intron 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr5_3:31533320-31533339 Msa0807980:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr5_3:31533343-31533362 Msa0807980:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr5_3:31533416-31533435 Msa0807980:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr5_3:31533417-31533436 Msa0807980:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_3:31533453-31533472 Msa0807980:intron 20.0%
!! TAAGCTTAAATTACTCATAA+AGG + chr5_3:31533768-31533787 Msa0807980:intron 20.0%
!!! TAAGCAATTTGTTAAAAGTT+CGG + chr5_3:31534221-31534240 Msa0807980:intron 20.0%
!!! ACTCTTATTTTGGAAAAAAT+AGG + chr5_3:31534250-31534269 Msa0807980:intron 20.0%
!!! TTATTTTGGAAAAAATAGGT+TGG + chr5_3:31534254-31534273 Msa0807980:intron 20.0%
!!! TAGTAATGATTAGTTTTTGT+CGG - chr5_3:31534306-31534325 None:intergenic 20.0%
!!! AAGAGATTTAAAGATGATTT+TGG - chr5_3:31534409-31534428 None:intergenic 20.0%
!!! AAGTTGTTTAAGAGTATAAT+TGG + chr5_3:31534590-31534609 Msa0807980:intron 20.0%
!!! TTAATACAGATTTTTAGACA+AGG + chr5_3:31535380-31535399 Msa0807980:intron 20.0%
! AATCATACTAGAAGGAAAAA+AGG + chr5_3:31529766-31529785 Msa0807980:CDS 25.0%
! AGAAGAAGAAAATTACTATC+TGG - chr5_3:31530348-31530367 None:intergenic 25.0%
! AGAAAAAGCAATATTCGAAT+TGG + chr5_3:31530700-31530719 Msa0807980:intron 25.0%
! AAACACTAGAATTGATGAAA+TGG + chr5_3:31530758-31530777 Msa0807980:intron 25.0%
! GAAGGAAAAAAAAAACAAGA+GGG - chr5_3:31531152-31531171 None:intergenic 25.0%
! AGAAGGAAAAAAAAAACAAG+AGG - chr5_3:31531153-31531172 None:intergenic 25.0%
!!! TGTTTTTTTTTTCCTTCTTC+AGG + chr5_3:31531155-31531174 Msa0807980:intron 25.0%
! GATTATAACTCAATTGATGA+TGG - chr5_3:31531308-31531327 None:intergenic 25.0%
! AGTTATAATCACATGAATCT+TGG + chr5_3:31531318-31531337 Msa0807980:intron 25.0%
! ATACAAGAATTTAAAGACAG+TGG + chr5_3:31531506-31531525 Msa0807980:intron 25.0%
! TAATCATCATTAAATAGTGG+TGG - chr5_3:31531847-31531866 None:intergenic 25.0%
!!! TATGATTAGTTTGACTATGT+CGG + chr5_3:31531930-31531949 Msa0807980:CDS 25.0%
!! TAATTGGTACTATTTTGTCA+TGG + chr5_3:31532158-31532177 Msa0807980:CDS 25.0%
!! AATTGGTACTATTTTGTCAT+GGG + chr5_3:31532159-31532178 Msa0807980:CDS 25.0%
! GTTTATATTCAAGACAATGT+TGG + chr5_3:31532213-31532232 Msa0807980:CDS 25.0%
! ATCTCAATAATTGCATTCAT+TGG + chr5_3:31532276-31532295 Msa0807980:CDS 25.0%
! TGATATAACAATGTAGAGTT+AGG - chr5_3:31532405-31532424 None:intergenic 25.0%
!!! TTGCTTATATTTTGAAATGG+AGG - chr5_3:31532578-31532597 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG - chr5_3:31532654-31532673 None:intergenic 25.0%
!!! TGATGATGTGCTTTATTTTT+TGG - chr5_3:31532746-31532765 None:intergenic 25.0%
!! CAAATTCGAATTCTTTTCTT+AGG - chr5_3:31532875-31532894 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG - chr5_3:31532654-31532673 None:intergenic 25.0%
!!! TGATGATGTGCTTTATTTTT+TGG - chr5_3:31532746-31532765 None:intergenic 25.0%
!! CAAATTCGAATTCTTTTCTT+AGG - chr5_3:31532875-31532894 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr5_3:31533342-31533361 Msa0807980:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_3:31533452-31533471 Msa0807980:intron 25.0%
!! TTTTCCGTATTTATTGAACT+GGG - chr5_3:31534165-31534184 None:intergenic 25.0%
!! TTTTTCCGTATTTATTGAAC+TGG - chr5_3:31534166-31534185 None:intergenic 25.0%
!! AGATTTAAAGATGATTTTGG+TGG - chr5_3:31534406-31534425 None:intergenic 25.0%
! AACTGTTTCCTTTAATCTTA+GGG - chr5_3:31535193-31535212 None:intergenic 25.0%
! TAACTGTTTCCTTTAATCTT+AGG - chr5_3:31535194-31535213 None:intergenic 25.0%
! AGGAATTGAAATCAATAATC+AGG + chr5_3:31535475-31535494 Msa0807980:CDS 25.0%
! ATTGAAATCAATAATCAGGA+TGG + chr5_3:31535479-31535498 Msa0807980:CDS 25.0%
! TTGAAATCAATAATCAGGAT+GGG + chr5_3:31535480-31535499 Msa0807980:CDS 25.0%
! AAATTCAGATCCATCATAAA+GGG + chr5_3:31536204-31536223 Msa0807980:CDS 25.0%
! CTATCATTATATAGTGTACA+AGG + chr5_3:31536382-31536401 Msa0807980:three_prime_UTR 25.0%
!!! CTGTGTTCATTTTTAATTGA+TGG + chr5_3:31536469-31536488 Msa0807980:three_prime_UTR 25.0%
ATGTACTGCAAAATGAATAC+AGG + chr5_3:31529715-31529734 Msa0807980:CDS 30.0%
!!! GAATACAGGTTTTGAAAAGA+TGG + chr5_3:31529729-31529748 Msa0807980:CDS 30.0%
TTTGAAAAGATGGAGAAGAA+TGG + chr5_3:31529739-31529758 Msa0807980:CDS 30.0%
ATGGTAGTAATCATACTAGA+AGG + chr5_3:31529758-31529777 Msa0807980:CDS 30.0%
ATACTAGAAGGAAAAAAGGA+GGG + chr5_3:31529770-31529789 Msa0807980:CDS 30.0%
CAAAGCATACCAAAGATAAA+AGG - chr5_3:31529808-31529827 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr5_3:31529964-31529983 None:intergenic 30.0%
AAAACCATGATTCAAAACCA+TGG - chr5_3:31530057-31530076 None:intergenic 30.0%
! TTCATTTCTGATTCTTTTGC+TGG + chr5_3:31530286-31530305 Msa0807980:CDS 30.0%
!! AATTGGTGTTATAACCTAGT+TGG + chr5_3:31530717-31530736 Msa0807980:intron 30.0%
AAAAAAAAATGTAAGGGTGG+TGG - chr5_3:31531242-31531261 None:intergenic 30.0%
TGTATTATATGTAAAGGTGG+AGG - chr5_3:31531277-31531296 None:intergenic 30.0%
!! ACATTGTTATTTGGAAAGCT+AGG - chr5_3:31531443-31531462 None:intergenic 30.0%
ATTAAGCATATGTCATGTCA+TGG + chr5_3:31531739-31531758 Msa0807980:intron 30.0%
!! ATTAAATAGTGGTGGATTCA+AGG - chr5_3:31531839-31531858 None:intergenic 30.0%
!!! CATGTCCTTGTTTTTTGATT+TGG - chr5_3:31532129-31532148 None:intergenic 30.0%
CAAATCAAAAAACAAGGACA+TGG + chr5_3:31532127-31532146 Msa0807980:CDS 30.0%
!!! GGACATGGACTTATTTTAAT+TGG + chr5_3:31532142-31532161 Msa0807980:CDS 30.0%
TCAATAATTGCATTCATTGG+TGG + chr5_3:31532279-31532298 Msa0807980:CDS 30.0%
CTTGATGCATCAATAACATT+AGG + chr5_3:31532435-31532454 Msa0807980:CDS 30.0%
ATGCATCAATAACATTAGGA+GGG + chr5_3:31532439-31532458 Msa0807980:CDS 30.0%
ATTGAGTTAATAAAGGCCTT+AGG + chr5_3:31532786-31532805 Msa0807980:intron 30.0%
AGTGATTAATTGTGCAAAGT+AGG + chr5_3:31532844-31532863 Msa0807980:intron 30.0%
! TTCGAATTCTTTTCTTAGGA+GGG - chr5_3:31532871-31532890 None:intergenic 30.0%
! ATTCGAATTCTTTTCTTAGG+AGG - chr5_3:31532872-31532891 None:intergenic 30.0%
ATTGAGTTAATAAAGGCCTT+AGG + chr5_3:31532786-31532805 Msa0807980:intron 30.0%
AGTGATTAATTGTGCAAAGT+AGG + chr5_3:31532844-31532863 Msa0807980:intron 30.0%
! TTCGAATTCTTTTCTTAGGA+GGG - chr5_3:31532871-31532890 None:intergenic 30.0%
! ATTCGAATTCTTTTCTTAGG+AGG - chr5_3:31532872-31532891 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr5_3:31533327-31533346 Msa0807980:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr5_3:31533430-31533449 Msa0807980:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr5_3:31533431-31533450 Msa0807980:intron 30.0%
!! GAGGCTTTATTTATAACTTG+TGG + chr5_3:31533870-31533889 Msa0807980:intron 30.0%
TCATCCCAGTTCAATAAATA+CGG + chr5_3:31534158-31534177 Msa0807980:intron 30.0%
ATATATTGTCCAAGCGATAA+AGG + chr5_3:31534186-31534205 Msa0807980:intron 30.0%
! ATTTTTAAACGTTAGCACGA+CGG - chr5_3:31534464-31534483 None:intergenic 30.0%
TGATTAAACATGCTAAGCTA+TGG + chr5_3:31535135-31535154 Msa0807980:intron 30.0%
GAGTTAGTTATGATCACATA+GGG - chr5_3:31535170-31535189 None:intergenic 30.0%
ACTGTTTCCTTTAATCTTAG+GGG - chr5_3:31535192-31535211 None:intergenic 30.0%
! AGGTTATATTGAGTTGTAAC+TGG - chr5_3:31535220-31535239 None:intergenic 30.0%
ATATGAAAACACCAGACTTA+TGG + chr5_3:31535427-31535446 Msa0807980:CDS 30.0%
! CTGAAGCTTTTATGTCAATA+GGG + chr5_3:31535910-31535929 Msa0807980:CDS 30.0%
!! TTTTATGTCAATAGGGCATT+TGG + chr5_3:31535917-31535936 Msa0807980:CDS 30.0%
! TTTTGGACATCAATTTCTCT+AGG + chr5_3:31535993-31536012 Msa0807980:CDS 30.0%
TTTGGACATCAATTTCTCTA+GGG + chr5_3:31535994-31536013 Msa0807980:CDS 30.0%
! GAACTATATCAGTACACTTT+TGG + chr5_3:31536016-31536035 Msa0807980:CDS 30.0%
ATTATTATCAGGAAGCCAAT+TGG - chr5_3:31536081-31536100 None:intergenic 30.0%
TCCTGATAATAATCTCAACA+AGG + chr5_3:31536088-31536107 Msa0807980:CDS 30.0%
CCTGATAATAATCTCAACAA+GGG + chr5_3:31536089-31536108 Msa0807980:CDS 30.0%
CTGATAATAATCTCAACAAG+GGG + chr5_3:31536090-31536109 Msa0807980:CDS 30.0%
! ATGGATCTGAATTTGCTTAT+AGG - chr5_3:31536198-31536217 None:intergenic 30.0%
CAAATTCAGATCCATCATAA+AGG + chr5_3:31536203-31536222 Msa0807980:CDS 30.0%
AATTCAGATCCATCATAAAG+GGG + chr5_3:31536205-31536224 Msa0807980:CDS 30.0%
CTTTATGAGTTGCTTAGATT+TGG + chr5_3:31536302-31536321 Msa0807980:three_prime_UTR 30.0%
GTATTTAAAGGGAAAGCTTG+TGG - chr5_3:31529676-31529695 None:intergenic 35.0%
CATACTAGAAGGAAAAAAGG+AGG + chr5_3:31529769-31529788 Msa0807980:CDS 35.0%
! GCAACAATGCCTTTTATCTT+TGG + chr5_3:31529796-31529815 Msa0807980:CDS 35.0%
TACTTCAATGCTATGAAGCA+CGG + chr5_3:31529879-31529898 Msa0807980:intron 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG + chr5_3:31530120-31530139 Msa0807980:intron 35.0%
! CTGGTAAATAATGGAAGCAA+CGG - chr5_3:31530329-31530348 None:intergenic 35.0%
! TGTAACTCTTGTTGTACTCA+TGG + chr5_3:31530549-31530568 Msa0807980:intron 35.0%
! GTAACTCTTGTTGTACTCAT+GGG + chr5_3:31530550-31530569 Msa0807980:intron 35.0%
! TAACTCTTGTTGTACTCATG+GGG + chr5_3:31530551-31530570 Msa0807980:intron 35.0%
ATTGCTGTAAACAACCAACT+AGG - chr5_3:31530734-31530753 None:intergenic 35.0%
TTGAGGGGATCTTGATTAAA+TGG + chr5_3:31530790-31530809 Msa0807980:intron 35.0%
AGATGAATAAGTGAGAAGTC+TGG + chr5_3:31531208-31531227 Msa0807980:intron 35.0%
CAAACTTAACTAAAACCTCG+AGG - chr5_3:31531357-31531376 None:intergenic 35.0%
TTTCTTTCTTTCTACAAGCC+AGG - chr5_3:31531407-31531426 None:intergenic 35.0%
GTATAGTAACCTAACCTTTG+AGG - chr5_3:31531576-31531595 None:intergenic 35.0%
TGTACTCATGTAGATGTTTG+AGG + chr5_3:31531694-31531713 Msa0807980:intron 35.0%
! GTCATGGTTTTCTCTATCAA+TGG + chr5_3:31531755-31531774 Msa0807980:intron 35.0%
ATCCGATTCATCGAATTGAT+CGG - chr5_3:31532106-31532125 None:intergenic 35.0%
CGGATCCAAATCAAAAAACA+AGG + chr5_3:31532121-31532140 Msa0807980:CDS 35.0%
ATATTCAAGACAATGTTGGG+TGG + chr5_3:31532217-31532236 Msa0807980:CDS 35.0%
TATTCAAGACAATGTTGGGT+GGG + chr5_3:31532218-31532237 Msa0807980:CDS 35.0%
AGATAAACATTGCCAATGTG+GGG - chr5_3:31532260-31532279 None:intergenic 35.0%
GAGATAAACATTGCCAATGT+GGG - chr5_3:31532261-31532280 None:intergenic 35.0%
TGAGATAAACATTGCCAATG+TGG - chr5_3:31532262-31532281 None:intergenic 35.0%
! AATGTAGAGTTAGGCACTTT+TGG - chr5_3:31532396-31532415 None:intergenic 35.0%
GATGCATCAATAACATTAGG+AGG + chr5_3:31532438-31532457 Msa0807980:CDS 35.0%
!! TTGAAATGGAGGAAGTATCA+AGG - chr5_3:31532567-31532586 None:intergenic 35.0%
AATGAACTCCGAGGATTATA+TGG - chr5_3:31533219-31533238 None:intergenic 35.0%
ATTTCTCATGCTAGCTATGT+CGG + chr5_3:31533236-31533255 Msa0807980:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr5_3:31533283-31533302 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr5_3:31533284-31533303 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr5_3:31533297-31533316 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr5_3:31533466-31533485 Msa0807980:intron 35.0%
GATGGTCTATGTCTTATCTA+TGG - chr5_3:31534040-31534059 None:intergenic 35.0%
TTCACGACAAAACAAAGTGA+TGG - chr5_3:31534058-31534077 None:intergenic 35.0%
GATAAAACTCCTTTATCGCT+TGG - chr5_3:31534198-31534217 None:intergenic 35.0%
!! TCGGTCTTTGACTCTTATTT+TGG + chr5_3:31534240-31534259 Msa0807980:intron 35.0%
! GTTTTTGTCGGAGAACTTAT+GGG - chr5_3:31534294-31534313 None:intergenic 35.0%
! AGTTTTTGTCGGAGAACTTA+TGG - chr5_3:31534295-31534314 None:intergenic 35.0%
!! AAAGATGATTTTGGTGGTTG+TGG - chr5_3:31534400-31534419 None:intergenic 35.0%
! TTTTTAAACGTTAGCACGAC+GGG - chr5_3:31534463-31534482 None:intergenic 35.0%
GGAGTTAGTTATGATCACAT+AGG - chr5_3:31535171-31535190 None:intergenic 35.0%
ACTAACTCCCCTAAGATTAA+AGG + chr5_3:31535182-31535201 Msa0807980:intron 35.0%
GCAAGTTATCACAGATTACA+AGG - chr5_3:31535240-31535259 None:intergenic 35.0%
ACACAAGTTAGTGTAGTGTA+TGG + chr5_3:31535261-31535280 Msa0807980:intron 35.0%
!!! TGTTCATAGTTTTGGCTTGT+TGG - chr5_3:31535569-31535588 None:intergenic 35.0%
! TAGGTGTCTGTTCATAGTTT+TGG - chr5_3:31535577-31535596 None:intergenic 35.0%
!! GGATTTCGAATGATTTGGTT+AGG - chr5_3:31535596-31535615 None:intergenic 35.0%
TATAACCTTCCTTCACAGAA+TGG + chr5_3:31535725-31535744 Msa0807980:CDS 35.0%
ATAACCTTCCTTCACAGAAT+GGG + chr5_3:31535726-31535745 Msa0807980:CDS 35.0%
! TAATCCCAATCTCAGTGTTT+TGG + chr5_3:31535856-31535875 Msa0807980:CDS 35.0%
ATTCCATGAAGGCTATATTG+TGG - chr5_3:31535888-31535907 None:intergenic 35.0%
ACAATATAGCCTTCATGGAA+TGG + chr5_3:31535887-31535906 Msa0807980:CDS 35.0%
! GCTGAAGCTTTTATGTCAAT+AGG + chr5_3:31535909-31535928 Msa0807980:CDS 35.0%
!!! GTACTGCAATGGCATTTTTT+TGG + chr5_3:31535976-31535995 Msa0807980:CDS 35.0%
CCCTTGTTGAGATTATTATC+AGG - chr5_3:31536092-31536111 None:intergenic 35.0%
! GGAAGTTGGAATACTTTTAC+TGG + chr5_3:31536111-31536130 Msa0807980:CDS 35.0%
AACTGTTATCCCCTTTATGA+TGG - chr5_3:31536217-31536236 None:intergenic 35.0%
GAGTTGCTTAGATTTGGATT+TGG + chr5_3:31536308-31536327 Msa0807980:three_prime_UTR 35.0%
!!! GTGTCCATGGTTTTGAATCA+TGG + chr5_3:31530050-31530069 Msa0807980:intron 40.0%
! GTGTTAGCAGCTTTGGTTAA+TGG - chr5_3:31530217-31530236 None:intergenic 40.0%
GCTAACACTCTCACTAACTT+TGG + chr5_3:31530229-31530248 Msa0807980:CDS 40.0%
AACACTCTCACTAACTTTGG+TGG + chr5_3:31530232-31530251 Msa0807980:CDS 40.0%
!! GAAATGAAAGCACCAAGCAA+TGG - chr5_3:31530274-31530293 None:intergenic 40.0%
GTGATTAGACTACCTGAAGA+AGG - chr5_3:31531170-31531189 None:intergenic 40.0%
! GGTTCAATCTTTTTACCTCG+AGG + chr5_3:31531339-31531358 Msa0807980:intron 40.0%
TTAAGACCACCACCTTGTAA+AGG + chr5_3:31531967-31531986 Msa0807980:CDS 40.0%
TAAGACCACCACCTTGTAAA+GGG + chr5_3:31531968-31531987 Msa0807980:CDS 40.0%
TCACTTCTACTAAGTGCACT+CGG + chr5_3:31532042-31532061 Msa0807980:CDS 40.0%
AGCCGATCAATTCGATGAAT+CGG + chr5_3:31532101-31532120 Msa0807980:CDS 40.0%
ATTCAAGACAATGTTGGGTG+GGG + chr5_3:31532219-31532238 Msa0807980:CDS 40.0%
!! TTGGTGGATATCGACTTTAC+CGG + chr5_3:31532295-31532314 Msa0807980:CDS 40.0%
ACCTTTACAAGTCGGGTAAA+CGG - chr5_3:31532342-31532361 None:intergenic 40.0%
CACACATACCTTTACAAGTC+GGG - chr5_3:31532349-31532368 None:intergenic 40.0%
CCACACATACCTTTACAAGT+CGG - chr5_3:31532350-31532369 None:intergenic 40.0%
!! GGAAGTATCAAGGAAGGTAA+AGG - chr5_3:31532557-31532576 None:intergenic 40.0%
!! AATGGAGGAAGTATCAAGGA+AGG - chr5_3:31532563-31532582 None:intergenic 40.0%
TTCCAATCATTGCTCACCTA+AGG - chr5_3:31532805-31532824 None:intergenic 40.0%
TTCCAATCATTGCTCACCTA+AGG - chr5_3:31532805-31532824 None:intergenic 40.0%
AACTCCGAGGATTATATGGT+GGG - chr5_3:31533215-31533234 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr5_3:31533281-31533300 Msa0807980:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr5_3:31533467-31533486 Msa0807980:intron 40.0%
AATAGGAATGAGAGTAGGTC+AGG - chr5_3:31533987-31534006 None:intergenic 40.0%
TCGCAAATAGGAATGAGAGT+AGG - chr5_3:31533992-31534011 None:intergenic 40.0%
GAGAACCTCTTTGCTTCTTT+CGG + chr5_3:31534010-31534029 Msa0807980:intron 40.0%
GACTAGTGGTGTGTGTAAAT+TGG - chr5_3:31534114-31534133 None:intergenic 40.0%
TTGAACTGGGATGAATAGAG+TGG - chr5_3:31534152-31534171 None:intergenic 40.0%
! AACCCAAAAGTGTGCTGAAA+GGG + chr5_3:31534833-31534852 Msa0807980:intron 40.0%
!! GTTGATAGTCTCCATAAGTC+TGG - chr5_3:31535441-31535460 None:intergenic 40.0%
TAATCAGGATGGGACCAATA+TGG + chr5_3:31535490-31535509 Msa0807980:CDS 40.0%
AATCAGGATGGGACCAATAT+GGG + chr5_3:31535491-31535510 Msa0807980:CDS 40.0%
!!! CATAGTTTTGGCTTGTTGGA+GGG - chr5_3:31535565-31535584 None:intergenic 40.0%
!!! TCATAGTTTTGGCTTGTTGG+AGG - chr5_3:31535566-31535585 None:intergenic 40.0%
TGCTGGGATTTCGAATGATT+TGG - chr5_3:31535601-31535620 None:intergenic 40.0%
AAATCATTCGAAATCCCAGC+AGG + chr5_3:31535600-31535619 Msa0807980:CDS 40.0%
AATCATTCGAAATCCCAGCA+GGG + chr5_3:31535601-31535620 Msa0807980:CDS 40.0%
GATTAAGACACGGTCATAGA+GGG - chr5_3:31535670-31535689 None:intergenic 40.0%
TGTGAAGGAAGGTTATACCA+CGG - chr5_3:31535722-31535741 None:intergenic 40.0%
CGTCGAAATGAAACGAAAGA+AGG + chr5_3:31535794-31535813 Msa0807980:CDS 40.0%
GAAACGAAAGAAGGTAGCTA+TGG + chr5_3:31535803-31535822 Msa0807980:CDS 40.0%
CAAGCCAAAACACTGAGATT+GGG - chr5_3:31535863-31535882 None:intergenic 40.0%
ACAAGCCAAAACACTGAGAT+TGG - chr5_3:31535864-31535883 None:intergenic 40.0%
! GAGTATGACAAGTACTGCAA+TGG + chr5_3:31535965-31535984 Msa0807980:CDS 40.0%
!! CAGTACACTTTTGGTTACCT+TGG + chr5_3:31536025-31536044 Msa0807980:CDS 40.0%
TGCAGTAAACTTGTGTACCA+AGG - chr5_3:31536045-31536064 None:intergenic 40.0%
TTGGTACACAAGTTTACTGC+AGG + chr5_3:31536044-31536063 Msa0807980:CDS 40.0%
TGGTACACAAGTTTACTGCA+GGG + chr5_3:31536045-31536064 Msa0807980:CDS 40.0%
TAATCTCAACAAGGGGAAGT+TGG + chr5_3:31536097-31536116 Msa0807980:CDS 40.0%
!! GTGAGCTTACTTTAGCTTTG+TGG + chr5_3:31536414-31536433 Msa0807980:three_prime_UTR 40.0%
TATGAAGCACGGACACTTCT+CGG + chr5_3:31529890-31529909 Msa0807980:intron 45.0%
AAAACCATGGACACAGACAC+CGG - chr5_3:31530044-31530063 None:intergenic 45.0%
GGTTACTGAGAAGTTAGCAG+TGG + chr5_3:31530141-31530160 Msa0807980:CDS 45.0%
TACTGAGAAGTTAGCAGTGG+TGG + chr5_3:31530144-31530163 Msa0807980:CDS 45.0%
ACTGAGAAGTTAGCAGTGGT+GGG + chr5_3:31530145-31530164 Msa0807980:CDS 45.0%
! GCATGTGAAGCTGTGTTGTT+AGG - chr5_3:31530195-31530214 None:intergenic 45.0%
!! AGTGAGAGTGTTAGCAGCTT+TGG - chr5_3:31530224-31530243 None:intergenic 45.0%
TCAAGCTTGACACCATTGCT+TGG + chr5_3:31530259-31530278 Msa0807980:CDS 45.0%
! TCTTGTTGTACTCATGGGGT+CGG + chr5_3:31530555-31530574 Msa0807980:intron 45.0%
CATGGGGTCGGGTTTATATA+CGG + chr5_3:31530567-31530586 Msa0807980:intron 45.0%
ATGGGGTCGGGTTTATATAC+GGG + chr5_3:31530568-31530587 Msa0807980:intron 45.0%
AAGATGTTCCTCACAGCACA+AGG + chr5_3:31530670-31530689 Msa0807980:intron 45.0%
TTAGACTGTGAAGGCCTCAA+AGG + chr5_3:31531559-31531578 Msa0807980:intron 45.0%
! CAAGGTGGTGGTCTTAATTG+TGG - chr5_3:31531964-31531983 None:intergenic 45.0%
AAGACCACCACCTTGTAAAG+GGG + chr5_3:31531969-31531988 Msa0807980:CDS 45.0%
TCTACTAAGTGCACTCGGAT+CGG + chr5_3:31532047-31532066 Msa0807980:CDS 45.0%
CATGGGAACAGCTATACTTG+TGG + chr5_3:31532176-31532195 Msa0807980:CDS 45.0%
ACTTTACCGGAACTTGAACC+CGG + chr5_3:31532308-31532327 Msa0807980:CDS 45.0%
CCTTTACAAGTCGGGTAAAC+GGG - chr5_3:31532341-31532360 None:intergenic 45.0%
! CCGACTTGTAAAGGTATGTG+TGG + chr5_3:31532347-31532366 Msa0807980:CDS 45.0%
TCACCCCACCATATAATCCT+CGG + chr5_3:31533208-31533227 Msa0807980:intron 45.0%
ACTCCGAGGATTATATGGTG+GGG - chr5_3:31533214-31533233 None:intergenic 45.0%
GAACTCCGAGGATTATATGG+TGG - chr5_3:31533216-31533235 None:intergenic 45.0%
AGCATGAGAAATGAACTCCG+AGG - chr5_3:31533228-31533247 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr5_3:31533279-31533298 None:intergenic 45.0%
! TAGGTCAGGTCGGTTTACAA+GGG - chr5_3:31533973-31533992 None:intergenic 45.0%
GCAAAGAGGTTCTCGCAAAT+AGG - chr5_3:31534004-31534023 None:intergenic 45.0%
AACCTCTTTGCTTCTTTCGG+TGG + chr5_3:31534013-31534032 Msa0807980:intron 45.0%
ACCTCTTTGCTTCTTTCGGT+GGG + chr5_3:31534014-31534033 Msa0807980:intron 45.0%
TGGATAGCACTAGAGACTAG+TGG - chr5_3:31534128-31534147 None:intergenic 45.0%
ACTGGGATGAATAGAGTGGA+TGG - chr5_3:31534148-31534167 None:intergenic 45.0%
GTTGTGGTAAAGTCAAGGTG+CGG - chr5_3:31534384-31534403 None:intergenic 45.0%
TGGTGGTTGTGGTAAAGTCA+AGG - chr5_3:31534389-31534408 None:intergenic 45.0%
!! CTTTCAGCACACTTTTGGGT+TGG - chr5_3:31534834-31534853 None:intergenic 45.0%
! CAACCCAAAAGTGTGCTGAA+AGG + chr5_3:31534832-31534851 Msa0807980:intron 45.0%
! ACCCAAAAGTGTGCTGAAAG+GGG + chr5_3:31534834-31534853 Msa0807980:intron 45.0%
! ACCCCTTTCAGCACACTTTT+GGG - chr5_3:31534838-31534857 None:intergenic 45.0%
! TACCCCTTTCAGCACACTTT+TGG - chr5_3:31534839-31534858 None:intergenic 45.0%
ACTATCAACCGTTCACAGAG+TGG + chr5_3:31535452-31535471 Msa0807980:CDS 45.0%
CAATTCCTCCACTCTGTGAA+CGG - chr5_3:31535463-31535482 None:intergenic 45.0%
AGAATGCCTGATGCCCATAT+TGG - chr5_3:31535507-31535526 None:intergenic 45.0%
ATCACAGCATATGCCCAACA+AGG + chr5_3:31535531-31535550 Msa0807980:CDS 45.0%
!! CAATGGTGAAGAGCATTGTG+AGG - chr5_3:31535647-31535666 None:intergenic 45.0%
GGATTAAGACACGGTCATAG+AGG - chr5_3:31535671-31535690 None:intergenic 45.0%
CAGTTAATCTACGAGCCACT+CGG - chr5_3:31535692-31535711 None:intergenic 45.0%
AATGCCCATTCTGTGAAGGA+AGG - chr5_3:31535733-31535752 None:intergenic 45.0%
TTCCTTCACAGAATGGGCAT+TGG + chr5_3:31535732-31535751 Msa0807980:CDS 45.0%
AACCAATGCCCATTCTGTGA+AGG - chr5_3:31535737-31535756 None:intergenic 45.0%
! CTTTTTGCTACCTTCGTTGC+TGG + chr5_3:31535768-31535787 Msa0807980:CDS 45.0%
AAGAAGGTAGCTATGGAGCA+CGG + chr5_3:31535810-31535829 Msa0807980:CDS 45.0%
GTGCCACAATATAGCCTTCA+TGG + chr5_3:31535882-31535901 Msa0807980:CDS 45.0%
AAGCTTCAGCCATTCCATGA+AGG - chr5_3:31535899-31535918 None:intergenic 45.0%
GCAGTACTTGTCATACTCTC+AGG - chr5_3:31535963-31535982 None:intergenic 45.0%
AAGTTTACTGCAGGGCCTAA+TGG + chr5_3:31536053-31536072 Msa0807980:CDS 45.0%
GGAAGCCAATTGGTACCATT+AGG - chr5_3:31536071-31536090 None:intergenic 45.0%
!!! TTTATTTTCTTAAAAAAAAT+CGG - chr5_3:31530864-31530883 None:intergenic 5.0%
!!! AAAAAAAAAAACTTTTTTTT+TGG + chr5_3:31530946-31530965 Msa0807980:intron 5.0%
!! TGTCGGTGTTGTGTCAGTGT+CGG - chr5_3:31529947-31529966 None:intergenic 50.0%
! CTTGTTGTACTCATGGGGTC+GGG + chr5_3:31530556-31530575 Msa0807980:intron 50.0%
TTTGCACACCTTGTGCTGTG+AGG - chr5_3:31530681-31530700 None:intergenic 50.0%
CTGTGAAGGCCTCAAAGGTT+AGG + chr5_3:31531564-31531583 Msa0807980:intron 50.0%
CATACCTCCTCCCCTTTACA+AGG - chr5_3:31531982-31532001 None:intergenic 50.0%
GTATGCCAGGAAGCTAGTAC+AGG + chr5_3:31531997-31532016 Msa0807980:CDS 50.0%
! GTTGTCCTGTACTAGCTTCC+TGG - chr5_3:31532005-31532024 None:intergenic 50.0%
CTACTAAGTGCACTCGGATC+GGG + chr5_3:31532048-31532067 Msa0807980:CDS 50.0%
AAGACAATGTTGGGTGGGGA+TGG + chr5_3:31532223-31532242 Msa0807980:CDS 50.0%
AGACAATGTTGGGTGGGGAT+GGG + chr5_3:31532224-31532243 Msa0807980:CDS 50.0%
TTGCCAATGTGGGGATTCCA+AGG - chr5_3:31532251-31532270 None:intergenic 50.0%
! TTCCTTCCGGGTTCAAGTTC+CGG - chr5_3:31532317-31532336 None:intergenic 50.0%
! CCCGTTTACCCGACTTGTAA+AGG + chr5_3:31532338-31532357 Msa0807980:CDS 50.0%
!!! GTGTGGCTGCTTTTCGTAAG+AGG + chr5_3:31532364-31532383 Msa0807980:CDS 50.0%
GGCCTTAGGTGAGCAATGAT+TGG + chr5_3:31532800-31532819 Msa0807980:intron 50.0%
GGCCTTAGGTGAGCAATGAT+TGG + chr5_3:31532800-31532819 Msa0807980:intron 50.0%
AAAAGCTACTACCTCCGTCC+CGG + chr5_3:31533262-31533281 Msa0807980:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr5_3:31533471-31533490 Msa0807980:intron 50.0%
AAATGTTACTCCCTCCGTCC+CGG - chr5_3:31533488-31533507 None:intergenic 50.0%
! GTAGGTCAGGTCGGTTTACA+AGG - chr5_3:31533974-31533993 None:intergenic 50.0%
GGAATGAGAGTAGGTCAGGT+CGG - chr5_3:31533983-31534002 None:intergenic 50.0%
CAAGGTGCGGAGAGATATAG+AGG - chr5_3:31534371-31534390 None:intergenic 50.0%
CAAGGCAGCAATAGTGACAG+AGG + chr5_3:31535398-31535417 Msa0807980:CDS 50.0%
ATCAACCGTTCACAGAGTGG+AGG + chr5_3:31535455-31535474 Msa0807980:CDS 50.0%
ATGGGACCAATATGGGCATC+AGG + chr5_3:31535498-31535517 Msa0807980:CDS 50.0%
!! GAGGGAGAAAGTGCCTTGTT+GGG - chr5_3:31535547-31535566 None:intergenic 50.0%
GAGGATGGTGAATACCGACA+TGG - chr5_3:31535628-31535647 None:intergenic 50.0%
!! GGTGAAGAGCATTGTGAGGA+TGG - chr5_3:31535643-31535662 None:intergenic 50.0%
TGACCGTGTCTTAATCCGAG+TGG + chr5_3:31535674-31535693 Msa0807980:CDS 50.0%
GAGCCACTCGGATTAAGACA+CGG - chr5_3:31535680-31535699 None:intergenic 50.0%
CGAGTGGCTCGTAGATTAAC+TGG + chr5_3:31535690-31535709 Msa0807980:CDS 50.0%
AGATTAACTGGACTCGACCG+TGG + chr5_3:31535702-31535721 Msa0807980:CDS 50.0%
TTCGACGAATCCAGCAACGA+AGG - chr5_3:31535781-31535800 None:intergenic 50.0%
CAGGGCCTAATGGTACCAAT+TGG + chr5_3:31536063-31536082 Msa0807980:CDS 50.0%
ACCACCACCTTGTAAAGGGG+AGG + chr5_3:31531972-31531991 Msa0807980:CDS 55.0%
TCCTCCCCTTTACAAGGTGG+TGG - chr5_3:31531976-31531995 None:intergenic 55.0%
ACCACCTTGTAAAGGGGAGG+AGG + chr5_3:31531975-31531994 Msa0807980:CDS 55.0%
ACCTCCTCCCCTTTACAAGG+TGG - chr5_3:31531979-31531998 None:intergenic 55.0%
! TAAAGGGGAGGAGGTATGCC+AGG + chr5_3:31531984-31532003 Msa0807980:CDS 55.0%
TAAGTGCACTCGGATCGGGT+GGG + chr5_3:31532052-31532071 Msa0807980:CDS 55.0%
GACAATGTTGGGTGGGGATG+GGG + chr5_3:31532225-31532244 Msa0807980:CDS 55.0%
TACCGGAACTTGAACCCGGA+AGG + chr5_3:31532312-31532331 Msa0807980:CDS 55.0%
GGTCAATTATACCGGGACGG+AGG - chr5_3:31533276-31533295 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr5_3:31533475-31533494 Msa0807980:intron 55.0%
GCCCACCGAAAGAAGCAAAG+AGG - chr5_3:31534018-31534037 None:intergenic 55.0%
AAACGTTAGCACGACGGGCA+CGG - chr5_3:31534458-31534477 None:intergenic 55.0%
!! GGAGGGAGAAAGTGCCTTGT+TGG - chr5_3:31535548-31535567 None:intergenic 55.0%
AATCCCAGCAGGGTCCATGT+CGG + chr5_3:31535611-31535630 Msa0807980:CDS 55.0%
ATACCGACATGGACCCTGCT+GGG - chr5_3:31535617-31535636 None:intergenic 55.0%
AATACCGACATGGACCCTGC+TGG - chr5_3:31535618-31535637 None:intergenic 55.0%
GACACGGTCATAGAGGGCAA+TGG - chr5_3:31535664-31535683 None:intergenic 55.0%
GCACGGACACTTCTCGGACT+AGG + chr5_3:31529896-31529915 Msa0807980:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr5_3:31530022-31530041 Msa0807980:intron 60.0%
CACAGACACCGGACACGACA+CGG - chr5_3:31530033-31530052 None:intergenic 60.0%
GTGTCCGGTGTCTGTGTCCA+TGG + chr5_3:31530037-31530056 Msa0807980:intron 60.0%
CTAAGTGCACTCGGATCGGG+TGG + chr5_3:31532051-31532070 Msa0807980:CDS 60.0%
CAAACGCTACCACGCAGGGT+CGG - chr5_3:31532080-31532099 None:intergenic 60.0%
GCTCCAAACGCTACCACGCA+GGG - chr5_3:31532084-31532103 None:intergenic 60.0%
GGGCCTTGGAATCCCCACAT+TGG + chr5_3:31532245-31532264 Msa0807980:CDS 60.0%
! GGGTAAACGGGCTTCCTTCC+GGG - chr5_3:31532329-31532348 None:intergenic 60.0%
! CGGGTAAACGGGCTTCCTTC+CGG - chr5_3:31532330-31532349 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr5_3:31533474-31533493 Msa0807980:intron 60.0%
CGGACGCGACACGTGCAACT+GGG - chr5_3:31529927-31529946 None:intergenic 65.0%
TCGGACGCGACACGTGCAAC+TGG - chr5_3:31529928-31529947 None:intergenic 65.0%
! CGACCCTGCGTGGTAGCGTT+TGG + chr5_3:31532078-31532097 Msa0807980:CDS 65.0%
GGCTCCAAACGCTACCACGC+AGG - chr5_3:31532085-31532104 None:intergenic 65.0%
GTTGGGTGGGGATGGGGCCT+TGG + chr5_3:31532231-31532250 Msa0807980:CDS 70.0%
GGGTGGGATCCGACCCTGCG+TGG + chr5_3:31532068-31532087 Msa0807980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31529668 31536537 31529668 ID=Msa0807980;Name=Msa0807980
chr5_3 mRNA 31529668 31536537 31529668 ID=Msa0807980-mRNA-1;Parent=Msa0807980;Name=Msa0807980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=47|1|1|1|1|1|4|260|589
chr5_3 exon 31529668 31529817 31529668 ID=Msa0807980-mRNA-1:exon:10462;Parent=Msa0807980-mRNA-1
chr5_3 exon 31530134 31530351 31530134 ID=Msa0807980-mRNA-1:exon:10463;Parent=Msa0807980-mRNA-1
chr5_3 exon 31531928 31532487 31531928 ID=Msa0807980-mRNA-1:exon:10464;Parent=Msa0807980-mRNA-1
chr5_3 exon 31535389 31536537 31535389 ID=Msa0807980-mRNA-1:exon:10465;Parent=Msa0807980-mRNA-1
chr5_3 five_prime_UTR 31529668 31529714 31529668 ID=Msa0807980-mRNA-1:five_prime_utr;Parent=Msa0807980-mRNA-1
chr5_3 CDS 31529715 31529817 31529715 ID=Msa0807980-mRNA-1:cds;Parent=Msa0807980-mRNA-1
chr5_3 CDS 31530134 31530351 31530134 ID=Msa0807980-mRNA-1:cds;Parent=Msa0807980-mRNA-1
chr5_3 CDS 31531928 31532487 31531928 ID=Msa0807980-mRNA-1:cds;Parent=Msa0807980-mRNA-1
chr5_3 CDS 31535389 31536277 31535389 ID=Msa0807980-mRNA-1:cds;Parent=Msa0807980-mRNA-1
chr5_3 three_prime_UTR 31536278 31536537 31536278 ID=Msa0807980-mRNA-1:three_prime_utr;Parent=Msa0807980-mRNA-1
Gene Sequence

>Msa0807980

ATGTACTGCAAAATGAATACAGGTTTTGAAAAGATGGAGAAGAATGGTAGTAATCATACTAGAAGGAAAAAAGGAGGGCTTGCAACAATGCCTTTTATCTTTGCTAATGAGGTTACTGAGAAGTTAGCAGTGGTGGGTTTCAATGCAAACATGATAAGCTACCTAACAACACAGCTTCACATGCCATTAACCAAAGCTGCTAACACTCTCACTAACTTTGGTGGAACTTCAAGCTTGACACCATTGCTTGGTGCTTTCATTTCTGATTCTTTTGCTGGAAAATTCATGACTATTACCGTTGCTTCCATTATTTACCAGATAGGTATGATTAGTTTGACTATGTCGGCGATACTTCCACAATTAAGACCACCACCTTGTAAAGGGGAGGAGGTATGCCAGGAAGCTAGTACAGGACAACTCGCTATTCTATATGTGTCACTTCTACTAAGTGCACTCGGATCGGGTGGGATCCGACCCTGCGTGGTAGCGTTTGGAGCCGATCAATTCGATGAATCGGATCCAAATCAAAAAACAAGGACATGGACTTATTTTAATTGGTACTATTTTGTCATGGGAACAGCTATACTTGTGGCTGTGACTGTTCTAGTTTATATTCAAGACAATGTTGGGTGGGGATGGGGCCTTGGAATCCCCACATTGGCAATGTTTATCTCAATAATTGCATTCATTGGTGGATATCGACTTTACCGGAACTTGAACCCGGAAGGAAGCCCGTTTACCCGACTTGTAAAGGTATGTGTGGCTGCTTTTCGTAAGAGGAAGATACCAAAAGTGCCTAACTCTACATTGTTATATCAAAATGATGAACTTGATGCATCAATAACATTAGGAGGGAAGCTGCTTCATTCTGATCAGTTAAAATTTTTAGACAAGGCAGCAATAGTGACAGAGGAAGACAATATGAAAACACCAGACTTATGGAGACTATCAACCGTTCACAGAGTGGAGGAATTGAAATCAATAATCAGGATGGGACCAATATGGGCATCAGGCATTCTTCTAATCACAGCATATGCCCAACAAGGCACTTTCTCCCTCCAACAAGCCAAAACTATGAACAGACACCTAACCAAATCATTCGAAATCCCAGCAGGGTCCATGTCGGTATTCACCATCCTCACAATGCTCTTCACCATTGCCCTCTATGACCGTGTCTTAATCCGAGTGGCTCGTAGATTAACTGGACTCGACCGTGGTATAACCTTCCTTCACAGAATGGGCATTGGTTTTGTGATCTCACTTTTTGCTACCTTCGTTGCTGGATTCGTCGAAATGAAACGAAAGAAGGTAGCTATGGAGCACGGACTCGTCGAACACTCTAGTGAAATAATCCCAATCTCAGTGTTTTGGCTTGTGCCACAATATAGCCTTCATGGAATGGCTGAAGCTTTTATGTCAATAGGGCATTTGGAGTTTTTCTATGATCAAGCTCCTGAGAGTATGACAAGTACTGCAATGGCATTTTTTTGGACATCAATTTCTCTAGGGAACTATATCAGTACACTTTTGGTTACCTTGGTACACAAGTTTACTGCAGGGCCTAATGGTACCAATTGGCTTCCTGATAATAATCTCAACAAGGGGAAGTTGGAATACTTTTACTGGCTAATCACACTCTTGCAGTTTTTTAATCTCATTTACTACTTGATTTGTGCTAAAATGTACACCTATAAGCAAATTCAGATCCATCATAAAGGGGATAACAGTTCAGAAGACAACAATATTGAGCTTGCTAGTACTACAGTTTAA
Protein sequence

>Msa0807980

MYCKMNTGFEKMEKNGSNHTRRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAANTLTNFGGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAILPQLRPPPCKGEEVCQEASTGQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYYFVMGTAILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYRLYRNLNPEGSPFTRLVKVCVAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLKFLDKAAIVTEEDNMKTPDLWRLSTVHRVEELKSIIRMGPIWASGILLITAYAQQGTFSLQQAKTMNRHLTKSFEIPAGSMSVFTILTMLFTIALYDRVLIRVARRLTGLDRGITFLHRMGIGFVISLFATFVAGFVEMKRKKVAMEHGLVEHSSEIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQAPESMTSTAMAFFWTSISLGNYISTLLVTLVHKFTAGPNGTNWLPDNNLNKGKLEYFYWLITLLQFFNLIYYLICAKMYTYKQIQIHHKGDNSSEDNNIELASTTV*