AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574660 MtrunA17_Chr8g0391391 98.785 494 6 0 1 494 1 494 0.0 1012
Msa0574660 MtrunA17_Chr3g0145261 61.814 474 174 5 23 493 18 487 0.0 602
Msa0574660 MtrunA17_Chr1g0195271 62.581 465 171 2 27 491 36 497 0.0 588
Msa0574660 MtrunA17_Chr4g0018301 59.052 464 182 4 30 493 45 500 0.0 565
Msa0574660 MtrunA17_Chr3g0119821 58.065 465 193 2 29 493 34 496 0.0 550
Msa0574660 MtrunA17_Chr4g0018361 57.692 494 188 8 14 494 8 493 0.0 546
Msa0574660 MtrunA17_Chr3g0080171 55.484 465 200 4 30 493 25 483 4.76e-179 511
Msa0574660 MtrunA17_Chr8g0388051 49.684 475 226 8 26 492 24 493 2.29e-159 466
Msa0574660 MtrunA17_Chr5g0397201 50.000 468 216 9 26 488 36 490 8.45e-157 455
Msa0574660 MtrunA17_Chr3g0119371 48.460 487 238 8 13 490 23 505 4.35e-156 454
Msa0574660 MtrunA17_Chr5g0439311 45.679 486 251 8 14 490 15 496 1.43e-150 439
Msa0574660 MtrunA17_Chr4g0038131 49.787 470 222 9 28 488 26 490 1.46e-146 434
Msa0574660 MtrunA17_Chr1g0164201 48.460 487 228 10 14 491 10 482 2.09e-142 417
Msa0574660 MtrunA17_Chr3g0086311 45.671 462 234 9 30 488 30 477 3.44e-136 402
Msa0574660 MtrunA17_Chr5g0397181 45.658 403 201 9 91 488 1 390 6.74e-122 362
Msa0574660 MtrunA17_Chr3g0142501 41.336 479 250 10 26 488 53 516 5.81e-112 341
Msa0574660 MtrunA17_Chr4g0018341 56.690 284 117 3 210 493 2 279 7.36e-111 330
Msa0574660 MtrunA17_Chr3g0136381 42.051 390 212 5 1 388 1 378 1.68e-109 332
Msa0574660 MtrunA17_Chr8g0372031 41.365 469 254 10 31 488 64 522 3.90e-108 332
Msa0574660 MtrunA17_Chr5g0444721 44.789 355 184 7 143 488 211 562 1.63e-91 290
Msa0574660 MtrunA17_Chr5g0444721 44.604 139 73 2 7 143 11 147 3.30e-34 135
Msa0574660 MtrunA17_Chr2g0291461 39.306 519 260 18 14 492 88 591 3.06e-89 285
Msa0574660 MtrunA17_Chr3g0120661 38.509 483 254 17 34 487 120 588 1.37e-83 270
Msa0574660 MtrunA17_Chr3g0126111 33.779 524 280 20 9 487 79 580 2.75e-80 261
Msa0574660 MtrunA17_Chr4g0018351 64.835 182 62 1 30 211 30 209 3.45e-76 238
Msa0574660 MtrunA17_Chr7g0269571 58.580 169 58 2 334 491 43 210 1.44e-60 198
Msa0574660 MtrunA17_Chr1g0164181 43.256 215 106 5 72 274 3 213 2.52e-41 150
Msa0574660 MtrunA17_Chr1g0164181 47.531 162 82 2 328 488 170 329 7.08e-41 149
Msa0574660 MtrunA17_Chr4g0022271 53.793 145 60 3 334 477 20 158 5.74e-41 145
Msa0574660 MtrunA17_Chr4g0072811 39.130 161 87 5 332 487 8 162 1.30e-24 101
Msa0574660 MtrunA17_Chr3g0136371 46.316 95 48 3 387 480 1 93 2.70e-20 85.9
Msa0574660 MtrunA17_Chr7g0269561 47.619 84 30 1 240 323 25 94 1.32e-17 79.0
Msa0574660 MtrunA17_Chr5g0397171 65.854 41 14 0 29 69 40 80 8.69e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574660 AT1G70710.1 78.702 493 100 3 1 493 1 488 0.0 808
Msa0574660 AT1G23210.1 76.458 480 110 2 14 493 12 488 0.0 780
Msa0574660 AT4G02290.1 62.366 465 172 2 27 491 49 510 0.0 588
Msa0574660 AT4G39010.1 59.488 469 185 4 29 494 28 494 0.0 585
Msa0574660 AT1G02800.1 61.771 463 172 3 29 491 42 499 0.0 565
Msa0574660 AT4G39000.1 53.535 495 221 5 3 494 2 490 0.0 525
Msa0574660 AT4G38990.2 54.601 489 209 8 15 494 9 493 3.60e-180 514
Msa0574660 AT1G22880.1 53.638 481 217 3 12 492 6 480 7.67e-180 513
Msa0574660 AT1G71380.1 52.807 481 221 3 12 492 6 480 5.45e-178 508
Msa0574660 AT4G02290.2 60.100 401 157 2 91 491 1 398 2.05e-169 484
Msa0574660 AT1G64390.1 51.477 474 217 8 27 492 22 490 2.11e-161 471
Msa0574660 AT4G11050.2 50.638 470 219 8 27 488 23 487 6.40e-159 462
Msa0574660 AT4G11050.3 50.638 470 219 8 27 488 23 487 1.70e-158 464
Msa0574660 AT4G11050.1 50.638 470 219 8 27 488 23 487 2.00e-158 464
Msa0574660 AT4G09740.1 50.418 478 222 7 14 488 7 472 9.47e-158 457
Msa0574660 AT4G23560.1 50.209 478 222 8 14 488 8 472 1.06e-157 457
Msa0574660 AT4G39010.2 57.851 363 149 3 29 388 28 389 2.17e-154 445
Msa0574660 AT2G32990.1 46.479 497 239 10 13 488 12 502 3.08e-148 434
Msa0574660 AT1G22880.2 52.488 402 185 3 91 492 1 396 8.65e-147 426
Msa0574660 AT2G44550.1 46.914 486 241 10 10 489 14 488 2.31e-138 408
Msa0574660 AT3G43860.2 45.923 466 235 8 30 492 34 485 1.71e-135 400
Msa0574660 AT3G43860.1 45.923 466 235 8 30 492 34 485 1.71e-135 400
Msa0574660 AT2G44540.1 46.570 481 242 9 14 488 17 488 2.17e-135 400
Msa0574660 AT2G44570.1 45.875 497 249 12 1 488 4 489 3.35e-133 395
Msa0574660 AT1G48930.1 47.863 468 231 8 29 488 29 491 4.30e-133 399
Msa0574660 AT2G44560.1 46.778 481 241 9 14 488 17 488 1.24e-129 385
Msa0574660 AT1G19940.2 42.117 463 251 8 30 485 48 500 6.97e-117 353
Msa0574660 AT1G19940.1 42.117 463 251 8 30 485 48 500 6.97e-117 353
Msa0574660 AT1G22880.3 54.799 323 141 2 12 334 6 323 1.06e-114 342
Msa0574660 AT1G75680.1 43.197 463 246 9 26 481 53 505 9.20e-113 343
Msa0574660 AT4G38990.1 50.689 363 152 5 15 376 9 345 7.46e-112 335
Msa0574660 AT2G44570.2 43.171 410 215 10 1 402 4 403 1.63e-93 290
Msa0574660 AT1G19940.3 39.891 366 208 6 30 388 48 408 1.18e-81 259
Msa0574660 AT5G49720.1 37.403 516 270 17 17 493 88 589 1.45e-81 265
Msa0574660 AT4G24260.1 38.618 492 256 17 34 493 112 589 1.37e-78 258
Msa0574660 AT1G65610.1 36.756 487 266 17 34 492 120 592 1.25e-76 252
Msa0574660 AT4G24260.3 37.047 386 202 15 34 387 112 488 6.84e-49 175
Msa0574660 AT4G24260.2 39.172 314 159 11 34 320 112 420 1.05e-45 166
Msa0574660 AT3G42153.1 41.667 96 48 3 241 332 16 107 1.38e-13 67.8

Find 171 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATGGCTTAGGTAAT+TGG 0.218254 4_1:-78326423 None:intergenic
CCGTTTACATCACAGTAAAA+TGG 0.226605 4_1:-78323291 None:intergenic
GCTTGGAGTGTGATTGATTT+TGG 0.252189 4_1:+78322533 Msa0574660:CDS
TCTTGTGCAGGAGGTGTTAA+TGG 0.257604 4_1:+78325890 Msa0574660:intron
ACCACATGGCACAACCTTAT+TGG 0.262580 4_1:-78326441 None:intergenic
GATTAATGTCCTCATTTCTA+AGG 0.284719 4_1:+78323655 Msa0574660:CDS
AGACATTTGGGTTAGGGTTT+GGG 0.288232 4_1:-78326895 None:intergenic
TACTAGGTTAACTACATTCT+TGG 0.292991 4_1:+78326728 Msa0574660:intron
CTGTGATGTAAACGGTTATC+AGG 0.307699 4_1:+78323299 Msa0574660:CDS
ACTAGGTTAACTACATTCTT+GGG 0.314393 4_1:+78326729 Msa0574660:intron
AAGACATTTGGGTTAGGGTT+TGG 0.317944 4_1:-78326896 None:intergenic
TGATAGAAAGGCCTGGAATC+AGG 0.354115 4_1:-78326965 None:intergenic
CAACAGTTGTGGTCCGATAA+AGG 0.356045 4_1:-78322674 None:intergenic
CCAACCAAGACATTTGGGTT+AGG 0.358950 4_1:-78326902 None:intergenic
ACAGCTCCAACCAAGACATT+TGG 0.360590 4_1:-78326908 None:intergenic
CTCCACTGGCGCCGTGACTC+TGG 0.364161 4_1:+78322330 Msa0574660:CDS
CAGATTCGTTCCCTGATTCC+AGG 0.376102 4_1:+78326954 Msa0574660:CDS
AAGAGCATTCTCTTCTTTGA+AGG 0.376759 4_1:+78322273 Msa0574660:CDS
TCAAGTCGGTGATCCTTTAT+CGG 0.388734 4_1:+78322661 Msa0574660:CDS
TTAAAAGCGACGTCAAAGAT+AGG 0.394540 4_1:+78322620 Msa0574660:CDS
TATCTATGTGGTGGGCAAAA+TGG 0.395332 4_1:+78327090 Msa0574660:three_prime_UTR
TTACCTAAGCCATGCCAATA+AGG 0.396072 4_1:+78326427 Msa0574660:CDS
AATTGGAATAAGCTAGTAAC+AGG 0.398288 4_1:-78326406 None:intergenic
TTTATTTGTTCAACATTGCC+TGG 0.407844 4_1:+78325957 Msa0574660:CDS
TTGGGAGAGACCGGAAGATA+TGG 0.408576 4_1:+78322694 Msa0574660:CDS
CAGCTCCAACCAAGACATTT+GGG 0.414539 4_1:-78326907 None:intergenic
TCACCTGCCACGTCGGATCC+TGG 0.416771 4_1:-78322755 None:intergenic
CAACCAAGACATTTGGGTTA+GGG 0.416934 4_1:-78326901 None:intergenic
GCTTCTCAATCGTGCCGTTA+CGG 0.417509 4_1:+78322844 Msa0574660:CDS
AAAAGGTGGGCTTATCTTCA+AGG 0.417922 4_1:+78326343 Msa0574660:intron
ATGTCCTACATGGTTGGTTA+TGG 0.418907 4_1:+78326767 Msa0574660:CDS
CATGACCGGCGGCGATTGTT+CGG 0.424061 4_1:-78322230 None:intergenic
ATGTCAGTTATTATGATTTG+AGG 0.424877 4_1:+78327157 Msa0574660:three_prime_UTR
CTTGTGCAGGAGGTGTTAAT+GGG 0.425782 4_1:+78325891 Msa0574660:intron
ACCCTGTATTGTTCTTGAAA+AGG 0.435464 4_1:+78327115 Msa0574660:three_prime_UTR
CACGATTAATGAGTTTGGTT+GGG 0.435935 4_1:+78323616 Msa0574660:CDS
TCGGAGCAAGAGGAGGAGTA+TGG 0.438334 4_1:-78322211 None:intergenic
AGGGAATTGAGCTTCCTCTA+TGG 0.439505 4_1:-78326814 None:intergenic
CGTTTACATCACAGTAAAAT+GGG 0.440137 4_1:-78323290 None:intergenic
CAACCTTATTGGCATGGCTT+AGG 0.440764 4_1:-78326430 None:intergenic
GGTGACACGATTAATGAGTT+TGG 0.440969 4_1:+78323611 Msa0574660:CDS
CAAAGAAGAGAATGCTCTTA+CGG 0.445074 4_1:-78322269 None:intergenic
CTCTATGGTGTATCCTCTGT+GGG 0.449617 4_1:-78326799 None:intergenic
GCCCACATTGGATGCAAAGC+TGG 0.453591 4_1:+78326854 Msa0574660:CDS
TTCTTTGAAGGACAACGCTC+TGG 0.454520 4_1:+78322285 Msa0574660:CDS
GCATCCAATGTGGGCTGGAT+GGG 0.456952 4_1:-78326846 None:intergenic
GGTTGGGACAACAAGCATGC+TGG 0.465263 4_1:+78323632 Msa0574660:CDS
GCCGGCGACAACATAAAGTT+CGG 0.465313 4_1:+78322479 Msa0574660:CDS
CTGCCACGTCGGATCCTGGA+TGG 0.466367 4_1:-78322751 None:intergenic
AGAAGCAATTTAGAGTAAGC+AGG 0.468543 4_1:-78322827 None:intergenic
ACACGATTAATGAGTTTGGT+TGG 0.471480 4_1:+78323615 Msa0574660:CDS
CGCGTTGAAATCAGTGAGGT+GGG 0.471721 4_1:+78322583 Msa0574660:CDS
TGCATCCAATGTGGGCTGGA+TGG 0.473445 4_1:-78326847 None:intergenic
GGCTGCAGCGTGGTTGCACA+AGG 0.475533 4_1:+78323529 Msa0574660:CDS
CATCCAGGATCCGACGTGGC+AGG 0.480184 4_1:+78322752 Msa0574660:CDS
CGTCTGATCAGCGTCTCCAC+TGG 0.482629 4_1:+78322316 Msa0574660:CDS
TATATCAATGCACCACTTGT+GGG 0.486411 4_1:+78327007 Msa0574660:CDS
GGCTCAGACTGCTGATAGAA+AGG 0.490540 4_1:-78326977 None:intergenic
AGCAGCGGCAAGTGCAGCGG+CGG 0.492359 4_1:-78322780 None:intergenic
AATGAAGCTGACCTGGCGTT+TGG 0.493543 4_1:-78326501 None:intergenic
GTTGGGACAACAAGCATGCT+GGG 0.495472 4_1:+78323633 Msa0574660:CDS
AGAGTAATGGGACCTGAGCT+AGG 0.496473 4_1:+78322557 Msa0574660:CDS
CCGGCGACAACATAAAGTTC+GGG 0.496773 4_1:+78322480 Msa0574660:CDS
AAGATCGATGGGTCCCATCC+AGG 0.505900 4_1:+78322737 Msa0574660:CDS
TTATTTCAGGTGGACTTGAC+CGG 0.508106 4_1:+78322443 Msa0574660:intron
GTCTTGGTTGGAGCTGTAGT+TGG 0.509506 4_1:+78326914 Msa0574660:CDS
TTTATCGGACCACAACTGTT+GGG 0.511695 4_1:+78322676 Msa0574660:CDS
ATTCTTGGGGATAACCCGTT+GGG 0.513192 4_1:+78326743 Msa0574660:CDS
TGGTTGGAGCTGTAGTTGGT+GGG 0.515521 4_1:+78326918 Msa0574660:CDS
CCACAACTGTTGGGAGAGAC+CGG 0.516857 4_1:+78322685 Msa0574660:CDS
GAGTAAAGCAGGGGTGGCAG+TGG 0.517290 4_1:-78326468 None:intergenic
TTCAACGCGTTCCCTAGCTC+AGG 0.517653 4_1:-78322569 None:intergenic
CAGGGTCATAGTTGGAAAGA+AGG 0.518075 4_1:+78322121 Msa0574660:five_prime_UTR
GGCGTGGTGTTTGTTCAAGT+CGG 0.519329 4_1:+78322647 Msa0574660:CDS
AGCTGACCTGGCGTTTGGCA+AGG 0.523073 4_1:-78326496 None:intergenic
GATAGAAAGGCCTGGAATCA+GGG 0.523647 4_1:-78326964 None:intergenic
CATTCTTGGGGATAACCCGT+TGG 0.526848 4_1:+78326742 Msa0574660:CDS
CTTTATCGGACCACAACTGT+TGG 0.527242 4_1:+78322675 Msa0574660:CDS
GCTTTGCATCCAATGTGGGC+TGG 0.528057 4_1:-78326851 None:intergenic
GCGACGTCAAAGATAGGTTC+CGG 0.529168 4_1:+78322626 Msa0574660:CDS
TTCACCCACAGGGTCATAGT+TGG 0.529170 4_1:+78322113 Msa0574660:five_prime_UTR
CGCACAGTTTACAAGATCGA+TGG 0.529865 4_1:+78322725 Msa0574660:CDS
TTACAACGACGATGTTAGCT+TGG 0.531207 4_1:+78322516 Msa0574660:CDS
CAAAAGCCTTGCCAAACGCC+AGG 0.531345 4_1:+78326490 Msa0574660:CDS
CCTAACCCAAATGTCTTGGT+TGG 0.533587 4_1:+78326902 Msa0574660:CDS
ACCGGAGGTTACTACGACGC+CGG 0.534390 4_1:+78322461 Msa0574660:CDS
GGAAGCAGCGGCAAGTGCAG+CGG 0.536448 4_1:-78322783 None:intergenic
CATAAAGTTCGGGTTTCCGA+TGG 0.538039 4_1:+78322490 Msa0574660:CDS
AAACCCTAACCCAAATGTCT+TGG 0.539421 4_1:+78326898 Msa0574660:CDS
TTCCAGAGTCACGGCGCCAG+TGG 0.540232 4_1:-78322332 None:intergenic
CAGTGGAGACGCTGATCAGA+CGG 0.540515 4_1:-78322315 None:intergenic
TGCCACGTCGGATCCTGGAT+GGG 0.546201 4_1:-78322750 None:intergenic
GGTGGGCTTATCTTCAAGGC+TGG 0.547963 4_1:+78326347 Msa0574660:intron
CCCGAACTTTATGTTGTCGC+CGG 0.549454 4_1:-78322480 None:intergenic
TTGGTTGGAGCTGTAGTTGG+TGG 0.549558 4_1:+78326917 Msa0574660:CDS
CCATGTAGGACATTCCCAAC+GGG 0.549622 4_1:-78326757 None:intergenic
TTGGGAATGTCCTACATGGT+TGG 0.550043 4_1:+78326761 Msa0574660:CDS
AATATAATATATCTATGTGG+TGG 0.550188 4_1:+78327081 Msa0574660:three_prime_UTR
ATGAATGTACCTTAGAAATG+AGG 0.553073 4_1:-78323664 None:intergenic
AGTAAAATGGGCACACTGCA+CGG 0.556850 4_1:-78323278 None:intergenic
ATATATCAATGCACCACTTG+TGG 0.557918 4_1:+78327006 Msa0574660:CDS
ATTCACGACGGTGCCACCGC+CGG 0.559048 4_1:+78322354 Msa0574660:CDS
CCCGTTGGGAATGTCCTACA+TGG 0.560864 4_1:+78326757 Msa0574660:CDS
AGGGAACGAATCTGTAGTGT+TGG 0.563833 4_1:-78326945 None:intergenic
ATATAATATATCTATGTGGT+GGG 0.564951 4_1:+78327082 Msa0574660:three_prime_UTR
CTTTCCAACTATGACCCTGT+GGG 0.571766 4_1:-78322117 None:intergenic
AATGAGGCTTACTCCGGCGG+TGG 0.574014 4_1:-78322367 None:intergenic
ACACATTACTCTTCACCCAC+AGG 0.576616 4_1:+78322102 Msa0574660:five_prime_UTR
CCTCTATGGTGTATCCTCTG+TGG 0.576842 4_1:-78326800 None:intergenic
CGTAACGTATCCATATCTTC+CGG 0.577286 4_1:-78322704 None:intergenic
GGGCTTATCTTCAAGGCTGG+TGG 0.577298 4_1:+78326350 Msa0574660:CDS
GAAATCAGTGAGGTGGGGAA+CGG 0.580456 4_1:+78322589 Msa0574660:CDS
ATGGGCACACTGCACGGCGT+AGG 0.581373 4_1:-78323272 None:intergenic
CGGCGATTGTTCGGAGCAAG+AGG 0.583519 4_1:-78322221 None:intergenic
TCCAGCTTTGCATCCAATGT+GGG 0.583568 4_1:-78326855 None:intergenic
ATGGCACAACCTTATTGGCA+TGG 0.584108 4_1:-78326436 None:intergenic
GCCGGCGTCGTAGTAACCTC+CGG 0.585051 4_1:-78322462 None:intergenic
TTGCTCCGAACAATCGCCGC+CGG 0.585863 4_1:+78322225 Msa0574660:CDS
ACGCGTTGAAATCAGTGAGG+TGG 0.587805 4_1:+78322582 Msa0574660:CDS
TTATACAATGTGCAACATCA+AGG 0.588472 4_1:-78327055 None:intergenic
GGCTGGATGGGATGAAACTG+AGG 0.588651 4_1:-78326834 None:intergenic
ACTTGTGCGTGAGAAAATCC+AGG 0.592850 4_1:-78325975 None:intergenic
TCTTTCCAACTATGACCCTG+TGG 0.597574 4_1:-78322118 None:intergenic
GCACAGTTTACAAGATCGAT+GGG 0.599104 4_1:+78322726 Msa0574660:CDS
AGCATCGTGAAAGTCATGAC+CGG 0.599271 4_1:-78322244 None:intergenic
AGTGGAGACGCTGATCAGAC+GGG 0.602320 4_1:-78322314 None:intergenic
GAGTAATGGGACCTGAGCTA+GGG 0.605232 4_1:+78322558 Msa0574660:CDS
CTAGGTTAACTACATTCTTG+GGG 0.606445 4_1:+78326730 Msa0574660:intron
CCGGTCTCTCCCAACAGTTG+TGG 0.609233 4_1:-78322685 None:intergenic
AGACTGCTGATAGAAAGGCC+TGG 0.611163 4_1:-78326972 None:intergenic
GTGGCAGTGGTGTCACCACA+TGG 0.614304 4_1:-78326455 None:intergenic
ATGAAAGCGACGCACCGTAA+CGG 0.614765 4_1:-78322858 None:intergenic
TCATCCCATCCAGCCCACAT+TGG 0.617007 4_1:+78326842 Msa0574660:CDS
CACATTACTCTTCACCCACA+GGG 0.618947 4_1:+78322103 Msa0574660:five_prime_UTR
ATCCAGCTTTGCATCCAATG+TGG 0.619352 4_1:-78326856 None:intergenic
CGATTGTTCGGAGCAAGAGG+AGG 0.621949 4_1:-78322218 None:intergenic
TATGGTGAGGACGTGAAATG+TGG 0.622008 4_1:-78322193 None:intergenic
ATCGTCGTTGTAAACGCCAT+CGG 0.625054 4_1:-78322506 None:intergenic
CGTCGTGAATTCCAGAGTCA+CGG 0.628890 4_1:-78322341 None:intergenic
TGAAATGAGGCTTACTCCGG+CGG 0.629033 4_1:-78322370 None:intergenic
GGAATAAGCTAGTAACAGGA+AGG 0.629980 4_1:-78326402 None:intergenic
AACGAATCTGTAGTGTTGGT+AGG 0.633183 4_1:-78326941 None:intergenic
GCACAAGTTCAATATTCCCC+AGG 0.635190 4_1:+78325990 Msa0574660:CDS
ACCATGTAGGACATTCCCAA+CGG 0.636931 4_1:-78326758 None:intergenic
GCCAATAAGGTTGTGCCATG+TGG 0.639947 4_1:+78326440 Msa0574660:CDS
TTTACCATAACCAACCATGT+AGG 0.642081 4_1:-78326771 None:intergenic
AGCTAGTAACAGGAAGGACA+AGG 0.643966 4_1:-78326396 None:intergenic
TGGTGCATTGATATATGTCG+TGG 0.645002 4_1:-78326999 None:intergenic
GCAAGAGGAGGAGTATGGTG+AGG 0.645531 4_1:-78322206 None:intergenic
TCTAATATAATATATCTATG+TGG 0.651175 4_1:+78327078 Msa0574660:three_prime_UTR
TGAAAGTTAATGATCTACCA+TGG 0.654459 4_1:+78327267 Msa0574660:three_prime_UTR
CCACAGAGGATACACCATAG+AGG 0.656279 4_1:+78326800 Msa0574660:CDS
GGCGGTTTCACCTGCCACGT+CGG 0.660020 4_1:-78322762 None:intergenic
TCTGAACACGATGGAAGCAG+CGG 0.661950 4_1:-78322795 None:intergenic
AAAGCGAGCAGACCCACAAG+TGG 0.662208 4_1:-78327019 None:intergenic
GTCCCATCCAGGATCCGACG+TGG 0.677907 4_1:+78322748 Msa0574660:CDS
ATCGTGAAAGTCATGACCGG+CGG 0.682155 4_1:-78322241 None:intergenic
TTTCAGGTGGACTTGACCGG+AGG 0.684110 4_1:+78322446 Msa0574660:intron
AGTTGCTTTGGGCTGCAGCG+TGG 0.693038 4_1:+78323519 Msa0574660:CDS
TCTGTATAGACGTCTACGCG+AGG 0.693382 4_1:-78323552 None:intergenic
GGTGCATTGATATATGTCGT+GGG 0.694250 4_1:-78326998 None:intergenic
GAGTTTGCTGACAGACATCG+TGG 0.705042 4_1:+78323234 Msa0574660:CDS
GCGTTGAAATCAGTGAGGTG+GGG 0.705063 4_1:+78322584 Msa0574660:CDS
GCTGGATGGGATGAAACTGA+GGG 0.708171 4_1:-78326833 None:intergenic
GTCAAAGATAGGTTCCGGCG+TGG 0.714049 4_1:+78322631 Msa0574660:CDS
CGTGACTCTGGAATTCACGA+CGG 0.714587 4_1:+78322342 Msa0574660:CDS
ATCACGTGATCTGAACACGA+TGG 0.718797 4_1:-78322804 None:intergenic
AGAATACATTATTCGTAACG+AGG 0.719570 4_1:+78323574 Msa0574660:CDS
GACTTGAACAAACACCACGC+CGG 0.721498 4_1:-78322645 None:intergenic
ATGGTAAACGCTACCCACAG+AGG 0.727149 4_1:+78326786 Msa0574660:CDS
GGAACGCGTTGAAATCAGTG+AGG 0.764189 4_1:+78322579 Msa0574660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTAATTAAT+TGG + chr4_1:78323472-78323491 Msa0574660:intron 0.0%
!! CTATTAAAAAAAATTAAATC+AGG + chr4_1:78324272-78324291 Msa0574660:intron 10.0%
!! ATTAAATGAAAATAATTAAG+GGG - chr4_1:78325020-78325039 None:intergenic 10.0%
!! TATGATATTTATATAAAGTT+TGG + chr4_1:78325454-78325473 Msa0574660:intron 10.0%
!! ATGATATTTATATAAAGTTT+GGG + chr4_1:78325455-78325474 Msa0574660:intron 10.0%
!!! TAATATTCATATTTTATTGA+TGG - chr4_1:78325865-78325884 None:intergenic 10.0%
!! GAAAAAAAAAACAAGAAAAA+TGG + chr4_1:78322146-78322165 Msa0574660:exon 15.0%
!! TTAAAAAATGAAGAAAAGAA+AGG - chr4_1:78322920-78322939 None:intergenic 15.0%
!!! CTAAAAAAAGTAATTTTGTT+TGG + chr4_1:78322975-78322994 Msa0574660:intron 15.0%
!! ATGATTAATGTAAACATATT+GGG - chr4_1:78324043-78324062 None:intergenic 15.0%
!! TATGATTAATGTAAACATAT+TGG - chr4_1:78324044-78324063 None:intergenic 15.0%
!!! TTTAGTTTACTTAATATAAC+CGG - chr4_1:78324232-78324251 None:intergenic 15.0%
!!! TTAATTTGACTTTATCTAAT+TGG + chr4_1:78324325-78324344 Msa0574660:intron 15.0%
!! AATCTCATAAATAAATTCAA+TGG - chr4_1:78324854-78324873 None:intergenic 15.0%
!!! CATTTAATTTTTTTTAGTTC+TGG + chr4_1:78325032-78325051 Msa0574660:intron 15.0%
!! TTCGTAAAAAATATAAAAAG+AGG + chr4_1:78325339-78325358 Msa0574660:intron 15.0%
!! TCGTAAAAAATATAAAAAGA+GGG + chr4_1:78325340-78325359 Msa0574660:intron 15.0%
!! TGATATTTATATAAAGTTTG+GGG + chr4_1:78325456-78325475 Msa0574660:intron 15.0%
!! TTATTTAAATGCTATAATCA+CGG - chr4_1:78326080-78326099 None:intergenic 15.0%
!! AAAAGAAAAAACATTAATGA+TGG - chr4_1:78326149-78326168 None:intergenic 15.0%
!! TCTAATATAATATATCTATG+TGG + chr4_1:78327078-78327097 Msa0574660:three_prime_UTR 15.0%
!! ATTAAAAAACAAAGCAATGT+AGG - chr4_1:78322414-78322433 None:intergenic 20.0%
!!! CTTTGTTTTTTAATTTGTTG+TGG + chr4_1:78322420-78322439 Msa0574660:intron 20.0%
!! AAAAAGTGAAATTAAATTCC+CGG - chr4_1:78323096-78323115 None:intergenic 20.0%
!! TTCTCTGTAAGATTAATATT+TGG + chr4_1:78323413-78323432 Msa0574660:intron 20.0%
!!! ACTATATCAAGTTTAAGATA+AGG - chr4_1:78324206-78324225 None:intergenic 20.0%
!! TTAAACTTGATATAGTAAAC+CGG + chr4_1:78324210-78324229 Msa0574660:intron 20.0%
!!! TTTCATTTTTAAGTTTCATG+CGG + chr4_1:78324751-78324770 Msa0574660:intron 20.0%
!! GCTTGAATAATAAACAAAAA+CGG - chr4_1:78324780-78324799 None:intergenic 20.0%
!!! AATTTGTCTTTAAAACTTGT+AGG + chr4_1:78324892-78324911 Msa0574660:intron 20.0%
!!! ATTTTTTTTAGTTCTGGAAA+TGG + chr4_1:78325038-78325057 Msa0574660:intron 20.0%
!! TAATATAACAACATATGTAG+TGG - chr4_1:78325427-78325446 None:intergenic 20.0%
!! GATATTTATATAAAGTTTGG+GGG + chr4_1:78325457-78325476 Msa0574660:intron 20.0%
!! ATATTTATATAAAGTTTGGG+GGG + chr4_1:78325458-78325477 Msa0574660:intron 20.0%
!! TTAAAAAAAAGTTACCACAA+TGG - chr4_1:78325588-78325607 None:intergenic 20.0%
!!! AATATTATTTTATCTTGTGC+AGG + chr4_1:78325878-78325897 Msa0574660:intron 20.0%
!! TCTCAAAAGTCAAAAATAAA+CGG - chr4_1:78326046-78326065 None:intergenic 20.0%
!!! TTATTTTTGACTTTTGAGAA+AGG + chr4_1:78326047-78326066 Msa0574660:intron 20.0%
!!! TAATGTTTTTTCTTTTTGCA+AGG + chr4_1:78326153-78326172 Msa0574660:intron 20.0%
!! GTTGGTTAATAATGTAAAAA+AGG + chr4_1:78326326-78326345 Msa0574660:intron 20.0%
!! GTTAATAATGTAAAAAAGGT+GGG + chr4_1:78326330-78326349 Msa0574660:intron 20.0%
!! AATATAATATATCTATGTGG+TGG + chr4_1:78327081-78327100 Msa0574660:three_prime_UTR 20.0%
!! ATATAATATATCTATGTGGT+GGG + chr4_1:78327082-78327101 Msa0574660:three_prime_UTR 20.0%
!! TTGAAAAGGAAAAAGAAAAT+GGG + chr4_1:78327129-78327148 Msa0574660:three_prime_UTR 20.0%
!!! TAATTTGTTGTGGTTATTTC+AGG + chr4_1:78322430-78322449 Msa0574660:intron 25.0%
!!! ATTGATTTTGGAAGAGTAAT+GGG + chr4_1:78322545-78322564 Msa0574660:CDS 25.0%
!!! AACCACTTTTTAATTTACCA+CGG - chr4_1:78323034-78323053 None:intergenic 25.0%
! TTACAGAGAAAAAAGTGATA+TGG - chr4_1:78323403-78323422 None:intergenic 25.0%
! ATTAATTGGAAAATCACTTG+TGG + chr4_1:78323486-78323505 Msa0574660:intron 25.0%
!! AGTAGTTACTACAGTATTTT+AGG + chr4_1:78323732-78323751 Msa0574660:intron 25.0%
! TAATGTAAACATATTGGGAA+TGG - chr4_1:78324038-78324057 None:intergenic 25.0%
!! TTAAGTGAAATGTTCTGTTT+TGG - chr4_1:78324103-78324122 None:intergenic 25.0%
! TGTGGTGTGAAAATAATTAA+TGG - chr4_1:78324128-78324147 None:intergenic 25.0%
!! ATTTGACTTTATCTAATTGG+TGG + chr4_1:78324328-78324347 Msa0574660:intron 25.0%
!! TTTGACTTTATCTAATTGGT+GGG + chr4_1:78324329-78324348 Msa0574660:intron 25.0%
!! CATGATCAAGAAATTTTCTT+TGG - chr4_1:78324563-78324582 None:intergenic 25.0%
! CAAAGAAAATTTCTTGATCA+TGG + chr4_1:78324561-78324580 Msa0574660:intron 25.0%
! CTAAGAATTTCTCTTCAAAA+GGG + chr4_1:78324589-78324608 Msa0574660:intron 25.0%
!!! TTCATTTTTAAGTTTCATGC+GGG + chr4_1:78324752-78324771 Msa0574660:intron 25.0%
! TATGAGATTGATTGATATCA+AGG + chr4_1:78324865-78324884 Msa0574660:intron 25.0%
! ATGAGATTGATTGATATCAA+GGG + chr4_1:78324866-78324885 Msa0574660:intron 25.0%
! TGAAATTGTGCAGAAAATAA+TGG - chr4_1:78325104-78325123 None:intergenic 25.0%
! TTATCTATCCAAAAAGTCAT+TGG + chr4_1:78325762-78325781 Msa0574660:intron 25.0%
! TATCTATCCAAAAAGTCATT+GGG + chr4_1:78325763-78325782 Msa0574660:intron 25.0%
! CTCAAAAGTCAAAAATAAAC+GGG - chr4_1:78326045-78326064 None:intergenic 25.0%
! AAAAACATTAATGATGGCTT+AGG - chr4_1:78326143-78326162 None:intergenic 25.0%
! ACATTATTAACCAACAAAAG+AGG - chr4_1:78326321-78326340 None:intergenic 25.0%
! GGTTAATAATGTAAAAAAGG+TGG + chr4_1:78326329-78326348 Msa0574660:intron 25.0%
! TGATGTTGAAAACAAGAAAT+TGG - chr4_1:78326551-78326570 None:intergenic 25.0%
! CTTGAAAAGGAAAAAGAAAA+TGG + chr4_1:78327128-78327147 Msa0574660:three_prime_UTR 25.0%
! TGAAAAGGAAAAAGAAAATG+GGG + chr4_1:78327130-78327149 Msa0574660:three_prime_UTR 25.0%
! ATGTCAGTTATTATGATTTG+AGG + chr4_1:78327157-78327176 Msa0574660:three_prime_UTR 25.0%
!!! TTGATGATGATTTTATGAAG+TGG + chr4_1:78327234-78327253 Msa0574660:three_prime_UTR 25.0%
!! GATTGATTTTGGAAGAGTAA+TGG + chr4_1:78322544-78322563 Msa0574660:CDS 30.0%
AACCGTGGTAAATTAAAAAG+TGG + chr4_1:78323029-78323048 Msa0574660:intron 30.0%
ATCAACGGTCATTATCTTAA+CGG - chr4_1:78323188-78323207 None:intergenic 30.0%
CGTTTACATCACAGTAAAAT+GGG - chr4_1:78323293-78323312 None:intergenic 30.0%
! CCATTTTACTGTGATGTAAA+CGG + chr4_1:78323291-78323310 Msa0574660:CDS 30.0%
AGAATACATTATTCGTAACG+AGG + chr4_1:78323574-78323593 Msa0574660:CDS 30.0%
GATTAATGTCCTCATTTCTA+AGG + chr4_1:78323655-78323674 Msa0574660:CDS 30.0%
ATGAATGTACCTTAGAAATG+AGG - chr4_1:78323667-78323686 None:intergenic 30.0%
CTGCTTCAATGAAATTAACA+GGG - chr4_1:78323704-78323723 None:intergenic 30.0%
AGGAATAATAGAGTCCTAAT+TGG - chr4_1:78324009-78324028 None:intergenic 30.0%
TAGGACTCTATTATTCCTAT+TGG + chr4_1:78324011-78324030 Msa0574660:intron 30.0%
TGAATCAGGATCAAGAAATT+TGG + chr4_1:78324433-78324452 Msa0574660:intron 30.0%
TTTATTTGTGAAGAGAGAGA+AGG - chr4_1:78324482-78324501 None:intergenic 30.0%
TTTGAAGAGAAATTCTTAGG+TGG - chr4_1:78324588-78324607 None:intergenic 30.0%
!! CCTTTTGAAGAGAAATTCTT+AGG - chr4_1:78324591-78324610 None:intergenic 30.0%
CCTAAGAATTTCTCTTCAAA+AGG + chr4_1:78324588-78324607 Msa0574660:intron 30.0%
! TAGAAAAAGCTTTATCCGTT+TGG + chr4_1:78324648-78324667 Msa0574660:intron 30.0%
TTTCAATACCAATCACCAAA+CGG - chr4_1:78324666-78324685 None:intergenic 30.0%
TCAAGATAGCAATGAGAAAA+GGG + chr4_1:78324687-78324706 Msa0574660:intron 30.0%
ATCCAAAGTTCCAATTATCA+CGG - chr4_1:78324811-78324830 None:intergenic 30.0%
TGAGATTGATTGATATCAAG+GGG + chr4_1:78324867-78324886 Msa0574660:intron 30.0%
AAACTTGTAGGACTAGAATT+TGG + chr4_1:78324904-78324923 Msa0574660:intron 30.0%
AACTTGTAGGACTAGAATTT+GGG + chr4_1:78324905-78324924 Msa0574660:intron 30.0%
TGTTCCAAATGTTTACGATA+TGG - chr4_1:78324987-78325006 None:intergenic 30.0%
!!! TTTTTAGTTCTGGAAATGGA+TGG + chr4_1:78325042-78325061 Msa0574660:intron 30.0%
CACAATTTCACTTTCTATCA+GGG + chr4_1:78325114-78325133 Msa0574660:intron 30.0%
CGGATCTTGAGTAAATTTAT+CGG + chr4_1:78325163-78325182 Msa0574660:intron 30.0%
GGATCTTGAGTAAATTTATC+GGG + chr4_1:78325164-78325183 Msa0574660:intron 30.0%
GATCTTGAGTAAATTTATCG+GGG + chr4_1:78325165-78325184 Msa0574660:intron 30.0%
ATCTTGAGTAAATTTATCGG+GGG + chr4_1:78325166-78325185 Msa0574660:intron 30.0%
AAATATACGATGTTGTAAGC+TGG + chr4_1:78325228-78325247 Msa0574660:intron 30.0%
! TACAAAACCCAATGACTTTT+TGG - chr4_1:78325773-78325792 None:intergenic 30.0%
!! AAAAGTCATTGGGTTTTGTA+CGG + chr4_1:78325773-78325792 Msa0574660:intron 30.0%
!! ATTATTTTATCTTGTGCAGG+AGG + chr4_1:78325881-78325900 Msa0574660:intron 30.0%
TTTATTTGTTCAACATTGCC+TGG + chr4_1:78325957-78325976 Msa0574660:CDS 30.0%
ACATACAAACACTCAATCTA+AGG - chr4_1:78326184-78326203 None:intergenic 30.0%
ACTGTGCACAATACTAAATA+GGG - chr4_1:78326226-78326245 None:intergenic 30.0%
AACTGTGCACAATACTAAAT+AGG - chr4_1:78326227-78326246 None:intergenic 30.0%
CAGTTATTAGTATTGCATAG+AGG + chr4_1:78326242-78326261 Msa0574660:intron 30.0%
GTATTGCATAGAGGTAATAT+AGG + chr4_1:78326251-78326270 Msa0574660:intron 30.0%
AAAGAAACAAACAAACACTG+TGG - chr4_1:78326280-78326299 None:intergenic 30.0%
! AGAGGAAGTTTGAGTTATTT+AGG - chr4_1:78326303-78326322 None:intergenic 30.0%
AATTGGAATAAGCTAGTAAC+AGG - chr4_1:78326409-78326428 None:intergenic 30.0%
! TTCACCGTTGATTAATTCTT+TGG + chr4_1:78326523-78326542 Msa0574660:intron 30.0%
! TCACCGTTGATTAATTCTTT+GGG + chr4_1:78326524-78326543 Msa0574660:intron 30.0%
TCAACATCAGACAAAACTAA+CGG + chr4_1:78326562-78326581 Msa0574660:intron 30.0%
ACGTGATATATACACAAAGT+TGG + chr4_1:78326643-78326662 Msa0574660:intron 30.0%
TACTAGGTTAACTACATTCT+TGG + chr4_1:78326728-78326747 Msa0574660:intron 30.0%
ACTAGGTTAACTACATTCTT+GGG + chr4_1:78326729-78326748 Msa0574660:intron 30.0%
TTATACAATGTGCAACATCA+AGG - chr4_1:78327058-78327077 None:intergenic 30.0%
!! TCCTTTTCAAGAACAATACA+GGG - chr4_1:78327119-78327138 None:intergenic 30.0%
!! TTCCTTTTCAAGAACAATAC+AGG - chr4_1:78327120-78327139 None:intergenic 30.0%
TGAAAGTTAATGATCTACCA+TGG + chr4_1:78327267-78327286 Msa0574660:three_prime_UTR 30.0%
CAAAGAAGAGAATGCTCTTA+CGG - chr4_1:78322272-78322291 None:intergenic 35.0%
!! AAGAGCATTCTCTTCTTTGA+AGG + chr4_1:78322273-78322292 Msa0574660:CDS 35.0%
! TTTGTTGTGGTTATTTCAGG+TGG + chr4_1:78322433-78322452 Msa0574660:intron 35.0%
TTAAAAGCGACGTCAAAGAT+AGG + chr4_1:78322620-78322639 Msa0574660:CDS 35.0%
! AGAAGCAATTTAGAGTAAGC+AGG - chr4_1:78322830-78322849 None:intergenic 35.0%
ACTGCTACTATCATGAATCA+CGG + chr4_1:78323122-78323141 Msa0574660:intron 35.0%
GTTAAGATAATGACCGTTGA+TGG + chr4_1:78323187-78323206 Msa0574660:intron 35.0%
CCGTTTACATCACAGTAAAA+TGG - chr4_1:78323294-78323313 None:intergenic 35.0%
ACAGAATAGTACTATCAGAG+AGG - chr4_1:78323359-78323378 None:intergenic 35.0%
CTCTGATAGTACTATTCTGT+AGG + chr4_1:78323359-78323378 Msa0574660:intron 35.0%
! GGAAAATCACTTGTGGTTTT+AGG + chr4_1:78323493-78323512 Msa0574660:intron 35.0%
!!! GTTTTAGGATGAGTTGCTTT+GGG + chr4_1:78323508-78323527 Msa0574660:intron 35.0%
ACACGATTAATGAGTTTGGT+TGG + chr4_1:78323615-78323634 Msa0574660:CDS 35.0%
CACGATTAATGAGTTTGGTT+GGG + chr4_1:78323616-78323635 Msa0574660:CDS 35.0%
CTTCAATGAAATTAACAGGG+AGG - chr4_1:78323701-78323720 None:intergenic 35.0%
GCTGCTTCAATGAAATTAAC+AGG - chr4_1:78323705-78323724 None:intergenic 35.0%
! ATTTGTTACTCCATGTGTGT+GGG + chr4_1:78323809-78323828 Msa0574660:intron 35.0%
AGGGAACTTTATCACTAGAT+TGG - chr4_1:78323948-78323967 None:intergenic 35.0%
CAGGATCAAGAAATTTGGTT+TGG + chr4_1:78324438-78324457 Msa0574660:intron 35.0%
AAGAGAGAAGTGAGAGAAAA+TGG - chr4_1:78324515-78324534 None:intergenic 35.0%
TCTTCTCTCTCTTCTTTCTT+TGG + chr4_1:78324531-78324550 Msa0574660:intron 35.0%
GTCAAGATAGCAATGAGAAA+AGG + chr4_1:78324686-78324705 Msa0574660:intron 35.0%
CAAGATAGCAATGAGAAAAG+GGG + chr4_1:78324688-78324707 Msa0574660:intron 35.0%
TTCCGTGATAATTGGAACTT+TGG + chr4_1:78324806-78324825 Msa0574660:intron 35.0%
GCTTTAATCTGAACCAAACT+GGG + chr4_1:78324942-78324961 Msa0574660:intron 35.0%
CCAAATGTTTACGATATGGA+GGG - chr4_1:78324983-78325002 None:intergenic 35.0%
TCCAAATGTTTACGATATGG+AGG - chr4_1:78324984-78325003 None:intergenic 35.0%
TTGTGCAGAAAATAATGGTG+AGG - chr4_1:78325099-78325118 None:intergenic 35.0%
GCACAATTTCACTTTCTATC+AGG + chr4_1:78325113-78325132 Msa0574660:intron 35.0%
TCTGTCTCTATGTCAGTAAA+TGG - chr4_1:78325389-78325408 None:intergenic 35.0%
TTAAAAAAGGAAGTCACCAG+GGG - chr4_1:78325518-78325537 None:intergenic 35.0%
CTTAAAAAAGGAAGTCACCA+GGG - chr4_1:78325519-78325538 None:intergenic 35.0%
AAGAAATATGATGTCGATGG+GGG - chr4_1:78325544-78325563 None:intergenic 35.0%
CAAGAAATATGATGTCGATG+GGG - chr4_1:78325545-78325564 None:intergenic 35.0%
GCAAGAAATATGATGTCGAT+GGG - chr4_1:78325546-78325565 None:intergenic 35.0%
TGCAAGAAATATGATGTCGA+TGG - chr4_1:78325547-78325566 None:intergenic 35.0%
CAATGGTGTGTTACAAGAAA+AGG - chr4_1:78325571-78325590 None:intergenic 35.0%
TTTCTTGTAACACACCATTG+TGG + chr4_1:78325571-78325590 Msa0574660:intron 35.0%
!! AAAGTCATTGGGTTTTGTAC+GGG + chr4_1:78325774-78325793 Msa0574660:intron 35.0%
AATGAGGGAATATATACCTG+GGG - chr4_1:78326009-78326028 None:intergenic 35.0%
CAATGAGGGAATATATACCT+GGG - chr4_1:78326010-78326029 None:intergenic 35.0%
ACAATGAGGGAATATATACC+TGG - chr4_1:78326011-78326030 None:intergenic 35.0%
GGCAAAACAAAACACAATGA+GGG - chr4_1:78326024-78326043 None:intergenic 35.0%
! ACTCAAACTTCCTCTTTTGT+TGG + chr4_1:78326308-78326327 Msa0574660:intron 35.0%
GGTCCCAAAGAATTAATCAA+CGG - chr4_1:78326530-78326549 None:intergenic 35.0%
! CGTTGCTTTCATTTACTACT+AGG + chr4_1:78326712-78326731 Msa0574660:intron 35.0%
CTAGGTTAACTACATTCTTG+GGG + chr4_1:78326730-78326749 Msa0574660:intron 35.0%
TTTACCATAACCAACCATGT+AGG - chr4_1:78326774-78326793 None:intergenic 35.0%
ATATATCAATGCACCACTTG+TGG + chr4_1:78327006-78327025 Msa0574660:CDS 35.0%
TATATCAATGCACCACTTGT+GGG + chr4_1:78327007-78327026 Msa0574660:CDS 35.0%
ACCCTGTATTGTTCTTGAAA+AGG + chr4_1:78327115-78327134 Msa0574660:three_prime_UTR 35.0%
ATGTGAAATGAGGCTTACTC+CGG - chr4_1:78322376-78322395 None:intergenic 40.0%
! ACAGAGCACTATGTGAAATG+AGG - chr4_1:78322386-78322405 None:intergenic 40.0%
! TTATTTCAGGTGGACTTGAC+CGG + chr4_1:78322443-78322462 Msa0574660:intron 40.0%
TTACAACGACGATGTTAGCT+TGG + chr4_1:78322516-78322535 Msa0574660:CDS 40.0%
!! GCTTGGAGTGTGATTGATTT+TGG + chr4_1:78322533-78322552 Msa0574660:CDS 40.0%
TCAAGTCGGTGATCCTTTAT+CGG + chr4_1:78322661-78322680 Msa0574660:CDS 40.0%
TTTATCGGACCACAACTGTT+GGG + chr4_1:78322676-78322695 Msa0574660:CDS 40.0%
CGTAACGTATCCATATCTTC+CGG - chr4_1:78322707-78322726 None:intergenic 40.0%
GCACAGTTTACAAGATCGAT+GGG + chr4_1:78322726-78322745 Msa0574660:CDS 40.0%
GAGAGAAGATTGCATGGAAT+GGG - chr4_1:78322885-78322904 None:intergenic 40.0%
AGAGAGAAGATTGCATGGAA+TGG - chr4_1:78322886-78322905 None:intergenic 40.0%
AAGAGAGAGAGAAGATTGCA+TGG - chr4_1:78322891-78322910 None:intergenic 40.0%
! TAAATTCCCGGTAAAGTGCT+TGG - chr4_1:78323084-78323103 None:intergenic 40.0%
TCATGAATCACGGAGTTAGT+TGG + chr4_1:78323132-78323151 Msa0574660:intron 40.0%
! AAGATAATGACCGTTGATGG+TGG + chr4_1:78323190-78323209 Msa0574660:intron 40.0%
CTGTGATGTAAACGGTTATC+AGG + chr4_1:78323299-78323318 Msa0574660:CDS 40.0%
!!! GGTTTTAGGATGAGTTGCTT+TGG + chr4_1:78323507-78323526 Msa0574660:intron 40.0%
GGTGACACGATTAATGAGTT+TGG + chr4_1:78323611-78323630 Msa0574660:CDS 40.0%
! CATTTGTTACTCCATGTGTG+TGG + chr4_1:78323808-78323827 Msa0574660:intron 40.0%
GATAAAGTTCCCTTATCACG+TGG + chr4_1:78323955-78323974 Msa0574660:intron 40.0%
GTGATGCACTTTCTCCAATT+AGG + chr4_1:78323992-78324011 Msa0574660:intron 40.0%
CATATTGGGAATGGACCAAT+AGG - chr4_1:78324029-78324048 None:intergenic 40.0%
!!! CTGTTTTGGTGTTTTGCTTG+TGG - chr4_1:78324089-78324108 None:intergenic 40.0%
! TATCTAATTGGTGGGTCACA+TGG + chr4_1:78324337-78324356 Msa0574660:intron 40.0%
GAATCTATGACACGATGAAG+AGG + chr4_1:78324359-78324378 Msa0574660:intron 40.0%
TGTGCAATTGTGCATATGCA+TGG + chr4_1:78324385-78324404 Msa0574660:intron 40.0%
GAGAAACTCTTGTGTGAATC+AGG + chr4_1:78324419-78324438 Msa0574660:intron 40.0%
AAGGGAATGTGAGTACAGAT+TGG + chr4_1:78324607-78324626 Msa0574660:intron 40.0%
! AGCTTTATCCGTTTGGTGAT+TGG + chr4_1:78324655-78324674 Msa0574660:intron 40.0%
GCAAGACATTCCGTGATAAT+TGG + chr4_1:78324798-78324817 Msa0574660:intron 40.0%
TTGTAGGACTAGAATTTGGG+TGG + chr4_1:78324908-78324927 Msa0574660:intron 40.0%
CGCTTTAATCTGAACCAAAC+TGG + chr4_1:78324941-78324960 Msa0574660:intron 40.0%
TTAATCTGAACCAAACTGGG+TGG + chr4_1:78324945-78324964 Msa0574660:intron 40.0%
CCCTCCATATCGTAAACATT+TGG + chr4_1:78324980-78324999 Msa0574660:intron 40.0%
GATTACTATGTGACTTCCAG+TGG + chr4_1:78325140-78325159 Msa0574660:intron 40.0%
AAGTGCATAACTGTGACATG+AGG + chr4_1:78325262-78325281 Msa0574660:intron 40.0%
TCACATTTGAACCCGCAAAA+AGG - chr4_1:78325315-78325334 None:intergenic 40.0%
!! TATAAAAAGAGGGTGCCATG+AGG + chr4_1:78325350-78325369 Msa0574660:intron 40.0%
GCTTAAAAAAGGAAGTCACC+AGG - chr4_1:78325520-78325539 None:intergenic 40.0%
AGAAATATGATGTCGATGGG+GGG - chr4_1:78325543-78325562 None:intergenic 40.0%
TTACAGAACAGTGACAGCAA+GGG - chr4_1:78325620-78325639 None:intergenic 40.0%
! GTTTTGTACGGGATTCTGTT+AGG + chr4_1:78325785-78325804 Msa0574660:intron 40.0%
ATTCTGTTAGGTCAGAGACA+CGG + chr4_1:78325797-78325816 Msa0574660:intron 40.0%
GGGCAAAACAAAACACAATG+AGG - chr4_1:78326025-78326044 None:intergenic 40.0%
TTAATGATGGCTTAGGCCTT+TGG - chr4_1:78326136-78326155 None:intergenic 40.0%
! AAAAGGTGGGCTTATCTTCA+AGG + chr4_1:78326343-78326362 Msa0574660:intron 40.0%
GGAATAAGCTAGTAACAGGA+AGG - chr4_1:78326405-78326424 None:intergenic 40.0%
ATTGGCATGGCTTAGGTAAT+TGG - chr4_1:78326426-78326445 None:intergenic 40.0%
TTACCTAAGCCATGCCAATA+AGG + chr4_1:78326427-78326446 Msa0574660:CDS 40.0%
!! AAGGCTTTTGAGTAAAGCAG+GGG - chr4_1:78326480-78326499 None:intergenic 40.0%
!! CAAGGCTTTTGAGTAAAGCA+GGG - chr4_1:78326481-78326500 None:intergenic 40.0%
! ATGTCCTACATGGTTGGTTA+TGG + chr4_1:78326767-78326786 Msa0574660:CDS 40.0%
! AGACATTTGGGTTAGGGTTT+GGG - chr4_1:78326898-78326917 None:intergenic 40.0%
! AAGACATTTGGGTTAGGGTT+TGG - chr4_1:78326899-78326918 None:intergenic 40.0%
AAACCCTAACCCAAATGTCT+TGG + chr4_1:78326898-78326917 Msa0574660:CDS 40.0%
! CAACCAAGACATTTGGGTTA+GGG - chr4_1:78326904-78326923 None:intergenic 40.0%
!! AACGAATCTGTAGTGTTGGT+AGG - chr4_1:78326944-78326963 None:intergenic 40.0%
! GGTGCATTGATATATGTCGT+GGG - chr4_1:78327001-78327020 None:intergenic 40.0%
! TGGTGCATTGATATATGTCG+TGG - chr4_1:78327002-78327021 None:intergenic 40.0%
!! TATCTATGTGGTGGGCAAAA+TGG + chr4_1:78327090-78327109 Msa0574660:three_prime_UTR 40.0%
ACACATTACTCTTCACCCAC+AGG + chr4_1:78322102-78322121 Msa0574660:five_prime_UTR 45.0%
CACATTACTCTTCACCCACA+GGG + chr4_1:78322103-78322122 Msa0574660:five_prime_UTR 45.0%
CTTTCCAACTATGACCCTGT+GGG - chr4_1:78322120-78322139 None:intergenic 45.0%
TCTTTCCAACTATGACCCTG+TGG - chr4_1:78322121-78322140 None:intergenic 45.0%
CAGGGTCATAGTTGGAAAGA+AGG + chr4_1:78322121-78322140 Msa0574660:five_prime_UTR 45.0%
TATGGTGAGGACGTGAAATG+TGG - chr4_1:78322196-78322215 None:intergenic 45.0%
AGCATCGTGAAAGTCATGAC+CGG - chr4_1:78322247-78322266 None:intergenic 45.0%
! TTCTTTGAAGGACAACGCTC+TGG + chr4_1:78322285-78322304 Msa0574660:CDS 45.0%
! CATAAAGTTCGGGTTTCCGA+TGG + chr4_1:78322490-78322509 Msa0574660:CDS 45.0%
ATCGTCGTTGTAAACGCCAT+CGG - chr4_1:78322509-78322528 None:intergenic 45.0%
CAACAGTTGTGGTCCGATAA+AGG - chr4_1:78322677-78322696 None:intergenic 45.0%
CTTTATCGGACCACAACTGT+TGG + chr4_1:78322675-78322694 Msa0574660:CDS 45.0%
CGCACAGTTTACAAGATCGA+TGG + chr4_1:78322725-78322744 Msa0574660:CDS 45.0%
ATCACGTGATCTGAACACGA+TGG - chr4_1:78322807-78322826 None:intergenic 45.0%
GTAGAAAACTAGCGAAACCG+TGG + chr4_1:78323014-78323033 Msa0574660:intron 45.0%
AGTAAAATGGGCACACTGCA+CGG - chr4_1:78323281-78323300 None:intergenic 45.0%
!!! AACGAGGTTGTTTTGAGAGC+TGG + chr4_1:78323590-78323609 Msa0574660:CDS 45.0%
TCGATAAGTACCCACACACA+TGG - chr4_1:78323822-78323841 None:intergenic 45.0%
AACGGGGAATGCAAGACAAT+AGG - chr4_1:78323878-78323897 None:intergenic 45.0%
ATTGTCTTGCATTCCCCGTT+AGG + chr4_1:78323878-78323897 Msa0574660:intron 45.0%
TTGCACAGACCACGTGATAA+GGG - chr4_1:78323967-78323986 None:intergenic 45.0%
ATTGCACAGACCACGTGATA+AGG - chr4_1:78323968-78323987 None:intergenic 45.0%
CAGAAGAAACACAGTGCATG+TGG - chr4_1:78324146-78324165 None:intergenic 45.0%
GATATGGAGGGCAAAGAGTT+TGG - chr4_1:78324971-78324990 None:intergenic 45.0%
CACATGCATAGTGCAGTAGT+GGG - chr4_1:78325074-78325093 None:intergenic 45.0%
TACTATGTGACTTCCAGTGG+CGG + chr4_1:78325143-78325162 Msa0574660:intron 45.0%
ATTTACTCAAGATCCGCCAC+TGG - chr4_1:78325159-78325178 None:intergenic 45.0%
TAACTGTGACATGAGGTACG+CGG + chr4_1:78325269-78325288 Msa0574660:intron 45.0%
TAGAGACAGAATAACCGCTG+CGG + chr4_1:78325399-78325418 Msa0574660:intron 45.0%
GAAATATGATGTCGATGGGG+GGG - chr4_1:78325542-78325561 None:intergenic 45.0%
GTTACAGAACAGTGACAGCA+AGG - chr4_1:78325621-78325640 None:intergenic 45.0%
TTCTGTTAGGTCAGAGACAC+GGG + chr4_1:78325798-78325817 Msa0574660:intron 45.0%
!! TCTTGTGCAGGAGGTGTTAA+TGG + chr4_1:78325890-78325909 Msa0574660:intron 45.0%
!! CTTGTGCAGGAGGTGTTAAT+GGG + chr4_1:78325891-78325910 Msa0574660:intron 45.0%
ACTTGTGCGTGAGAAAATCC+AGG - chr4_1:78325978-78325997 None:intergenic 45.0%
GCACAAGTTCAATATTCCCC+AGG + chr4_1:78325990-78326009 Msa0574660:CDS 45.0%
AGCTAGTAACAGGAAGGACA+AGG - chr4_1:78326399-78326418 None:intergenic 45.0%
CAACCTTATTGGCATGGCTT+AGG - chr4_1:78326433-78326452 None:intergenic 45.0%
ATGGCACAACCTTATTGGCA+TGG - chr4_1:78326439-78326458 None:intergenic 45.0%
ACCACATGGCACAACCTTAT+TGG - chr4_1:78326444-78326463 None:intergenic 45.0%
!! GCAAGGCTTTTGAGTAAAGC+AGG - chr4_1:78326482-78326501 None:intergenic 45.0%
ATTCTTGGGGATAACCCGTT+GGG + chr4_1:78326743-78326762 Msa0574660:CDS 45.0%
ACCATGTAGGACATTCCCAA+CGG - chr4_1:78326761-78326780 None:intergenic 45.0%
TTGGGAATGTCCTACATGGT+TGG + chr4_1:78326761-78326780 Msa0574660:CDS 45.0%
CTCTATGGTGTATCCTCTGT+GGG - chr4_1:78326802-78326821 None:intergenic 45.0%
AGGGAATTGAGCTTCCTCTA+TGG - chr4_1:78326817-78326836 None:intergenic 45.0%
TCCAGCTTTGCATCCAATGT+GGG - chr4_1:78326858-78326877 None:intergenic 45.0%
ATCCAGCTTTGCATCCAATG+TGG - chr4_1:78326859-78326878 None:intergenic 45.0%
! CCAACCAAGACATTTGGGTT+AGG - chr4_1:78326905-78326924 None:intergenic 45.0%
CCTAACCCAAATGTCTTGGT+TGG + chr4_1:78326902-78326921 Msa0574660:CDS 45.0%
CAGCTCCAACCAAGACATTT+GGG - chr4_1:78326910-78326929 None:intergenic 45.0%
ACAGCTCCAACCAAGACATT+TGG - chr4_1:78326911-78326930 None:intergenic 45.0%
AGGGAACGAATCTGTAGTGT+TGG - chr4_1:78326948-78326967 None:intergenic 45.0%
GATAGAAAGGCCTGGAATCA+GGG - chr4_1:78326967-78326986 None:intergenic 45.0%
TGATAGAAAGGCCTGGAATC+AGG - chr4_1:78326968-78326987 None:intergenic 45.0%
!! AATTAAATGAAAATAATTAA+GGG - chr4_1:78325021-78325040 None:intergenic 5.0%
!! AAATTAAATGAAAATAATTA+AGG - chr4_1:78325022-78325041 None:intergenic 5.0%
!! ATATATATTCTATAAATATT+TGG - chr4_1:78325194-78325213 None:intergenic 5.0%
TTCACCCACAGGGTCATAGT+TGG + chr4_1:78322113-78322132 Msa0574660:five_prime_UTR 50.0%
ATCGTGAAAGTCATGACCGG+CGG - chr4_1:78322244-78322263 None:intergenic 50.0%
CGTCGTGAATTCCAGAGTCA+CGG - chr4_1:78322344-78322363 None:intergenic 50.0%
!! CGTGACTCTGGAATTCACGA+CGG + chr4_1:78322342-78322361 Msa0574660:CDS 50.0%
TGAAATGAGGCTTACTCCGG+CGG - chr4_1:78322373-78322392 None:intergenic 50.0%
GCCGGCGACAACATAAAGTT+CGG + chr4_1:78322479-78322498 Msa0574660:CDS 50.0%
CCCGAACTTTATGTTGTCGC+CGG - chr4_1:78322483-78322502 None:intergenic 50.0%
CCGGCGACAACATAAAGTTC+GGG + chr4_1:78322480-78322499 Msa0574660:CDS 50.0%
! AGAGTAATGGGACCTGAGCT+AGG + chr4_1:78322557-78322576 Msa0574660:CDS 50.0%
! GAGTAATGGGACCTGAGCTA+GGG + chr4_1:78322558-78322577 Msa0574660:CDS 50.0%
GGAACGCGTTGAAATCAGTG+AGG + chr4_1:78322579-78322598 Msa0574660:CDS 50.0%
ACGCGTTGAAATCAGTGAGG+TGG + chr4_1:78322582-78322601 Msa0574660:CDS 50.0%
CGCGTTGAAATCAGTGAGGT+GGG + chr4_1:78322583-78322602 Msa0574660:CDS 50.0%
GCGTTGAAATCAGTGAGGTG+GGG + chr4_1:78322584-78322603 Msa0574660:CDS 50.0%
GAAATCAGTGAGGTGGGGAA+CGG + chr4_1:78322589-78322608 Msa0574660:CDS 50.0%
GCGACGTCAAAGATAGGTTC+CGG + chr4_1:78322626-78322645 Msa0574660:CDS 50.0%
GACTTGAACAAACACCACGC+CGG - chr4_1:78322648-78322667 None:intergenic 50.0%
GGCGTGGTGTTTGTTCAAGT+CGG + chr4_1:78322647-78322666 Msa0574660:CDS 50.0%
TTGGGAGAGACCGGAAGATA+TGG + chr4_1:78322694-78322713 Msa0574660:CDS 50.0%
TCTGAACACGATGGAAGCAG+CGG - chr4_1:78322798-78322817 None:intergenic 50.0%
! GCTTCTCAATCGTGCCGTTA+CGG + chr4_1:78322844-78322863 Msa0574660:CDS 50.0%
ATGAAAGCGACGCACCGTAA+CGG - chr4_1:78322861-78322880 None:intergenic 50.0%
GCCCATTCCAAGCACTTTAC+CGG + chr4_1:78323074-78323093 Msa0574660:intron 50.0%
! CCCGGTAAAGTGCTTGGAAT+GGG - chr4_1:78323078-78323097 None:intergenic 50.0%
CCCATTCCAAGCACTTTACC+GGG + chr4_1:78323075-78323094 Msa0574660:intron 50.0%
! TCCCGGTAAAGTGCTTGGAA+TGG - chr4_1:78323079-78323098 None:intergenic 50.0%
CACACACTCACCACCATCAA+CGG - chr4_1:78323203-78323222 None:intergenic 50.0%
!! GAGTTTGCTGACAGACATCG+TGG + chr4_1:78323234-78323253 Msa0574660:CDS 50.0%
TCTGTATAGACGTCTACGCG+AGG - chr4_1:78323555-78323574 None:intergenic 50.0%
GTTGGGACAACAAGCATGCT+GGG + chr4_1:78323633-78323652 Msa0574660:CDS 50.0%
AAGAGTTTGGCCACCCAGTT+TGG - chr4_1:78324958-78324977 None:intergenic 50.0%
!! TGCATAGTGCAGTAGTGGGT+GGG - chr4_1:78325070-78325089 None:intergenic 50.0%
! ATGCATAGTGCAGTAGTGGG+TGG - chr4_1:78325071-78325090 None:intergenic 50.0%
GCACATGCATAGTGCAGTAG+TGG - chr4_1:78325075-78325094 None:intergenic 50.0%
GATGTTGTAAGCTGGTGCGA+TGG + chr4_1:78325236-78325255 Msa0574660:intron 50.0%
AACTGTGACATGAGGTACGC+GGG + chr4_1:78325270-78325289 Msa0574660:intron 50.0%
ACCCGCAAAAAGGTCTCAGT+GGG - chr4_1:78325305-78325324 None:intergenic 50.0%
AACCCGCAAAAAGGTCTCAG+TGG - chr4_1:78325306-78325325 None:intergenic 50.0%
! ATAAAGTTTGGGGGGTGCAG+TGG + chr4_1:78325466-78325485 Msa0574660:intron 50.0%
AAAAAGGAAGTCACCAGGGG+CGG - chr4_1:78325515-78325534 None:intergenic 50.0%
TCGATGGGGGGGCTTAAAAA+AGG - chr4_1:78325531-78325550 None:intergenic 50.0%
GAACAGTGACAGCAAGGGAA+AGG - chr4_1:78325615-78325634 None:intergenic 50.0%
ACCCATGTGTCCATGACCAA+AGG + chr4_1:78326117-78326136 Msa0574660:intron 50.0%
GCCTTTGGTCATGGACACAT+GGG - chr4_1:78326121-78326140 None:intergenic 50.0%
ATGGCTTAGGCCTTTGGTCA+TGG - chr4_1:78326130-78326149 None:intergenic 50.0%
GCCAATAAGGTTGTGCCATG+TGG + chr4_1:78326440-78326459 Msa0574660:CDS 50.0%
!! GCTTTTGAGTAAAGCAGGGG+TGG - chr4_1:78326477-78326496 None:intergenic 50.0%
AATGAAGCTGACCTGGCGTT+TGG - chr4_1:78326504-78326523 None:intergenic 50.0%
ACGGTGAAATGAAGCTGACC+TGG - chr4_1:78326511-78326530 None:intergenic 50.0%
CATTCTTGGGGATAACCCGT+TGG + chr4_1:78326742-78326761 Msa0574660:CDS 50.0%
CCATGTAGGACATTCCCAAC+GGG - chr4_1:78326760-78326779 None:intergenic 50.0%
ATGGTAAACGCTACCCACAG+AGG + chr4_1:78326786-78326805 Msa0574660:CDS 50.0%
CCTCTATGGTGTATCCTCTG+TGG - chr4_1:78326803-78326822 None:intergenic 50.0%
CCACAGAGGATACACCATAG+AGG + chr4_1:78326800-78326819 Msa0574660:CDS 50.0%
GCTGGATGGGATGAAACTGA+GGG - chr4_1:78326836-78326855 None:intergenic 50.0%
GTCTTGGTTGGAGCTGTAGT+TGG + chr4_1:78326914-78326933 Msa0574660:CDS 50.0%
TTGGTTGGAGCTGTAGTTGG+TGG + chr4_1:78326917-78326936 Msa0574660:CDS 50.0%
TGGTTGGAGCTGTAGTTGGT+GGG + chr4_1:78326918-78326937 Msa0574660:CDS 50.0%
CAGATTCGTTCCCTGATTCC+AGG + chr4_1:78326954-78326973 Msa0574660:CDS 50.0%
AGACTGCTGATAGAAAGGCC+TGG - chr4_1:78326975-78326994 None:intergenic 50.0%
GGCTCAGACTGCTGATAGAA+AGG - chr4_1:78326980-78326999 None:intergenic 50.0%
! GCAAGAGGAGGAGTATGGTG+AGG - chr4_1:78322209-78322228 None:intergenic 55.0%
TCGGAGCAAGAGGAGGAGTA+TGG - chr4_1:78322214-78322233 None:intergenic 55.0%
CGATTGTTCGGAGCAAGAGG+AGG - chr4_1:78322221-78322240 None:intergenic 55.0%
AGTGGAGACGCTGATCAGAC+GGG - chr4_1:78322317-78322336 None:intergenic 55.0%
CAGTGGAGACGCTGATCAGA+CGG - chr4_1:78322318-78322337 None:intergenic 55.0%
! TTTCAGGTGGACTTGACCGG+AGG + chr4_1:78322446-78322465 Msa0574660:intron 55.0%
TTCAACGCGTTCCCTAGCTC+AGG - chr4_1:78322572-78322591 None:intergenic 55.0%
GTCAAAGATAGGTTCCGGCG+TGG + chr4_1:78322631-78322650 Msa0574660:CDS 55.0%
CCACAACTGTTGGGAGAGAC+CGG + chr4_1:78322685-78322704 Msa0574660:CDS 55.0%
AAGATCGATGGGTCCCATCC+AGG + chr4_1:78322737-78322756 Msa0574660:CDS 55.0%
! ATGGTGGTGAGTGTGTGTGC+AGG + chr4_1:78323206-78323225 Msa0574660:intron 55.0%
GGTTGGGACAACAAGCATGC+TGG + chr4_1:78323632-78323651 Msa0574660:CDS 55.0%
TGCATTCCCCGTTAGGCATG+TGG + chr4_1:78323885-78323904 Msa0574660:intron 55.0%
GCATTCCCCGTTAGGCATGT+GGG + chr4_1:78323886-78323905 Msa0574660:intron 55.0%
CCGCAAAAAGGTCTCAGTGG+GGG - chr4_1:78325303-78325322 None:intergenic 55.0%
! CCCCCACTGAGACCTTTTTG+CGG + chr4_1:78325300-78325319 Msa0574660:intron 55.0%
CCCGCAAAAAGGTCTCAGTG+GGG - chr4_1:78325304-78325323 None:intergenic 55.0%
! CCCCACTGAGACCTTTTTGC+GGG + chr4_1:78325301-78325320 Msa0574660:intron 55.0%
!! CATATGTAGTGGTGCCGCAG+CGG - chr4_1:78325416-78325435 None:intergenic 55.0%
! GGATCTCTTTAGAGACCCCC+AGG - chr4_1:78325494-78325513 None:intergenic 55.0%
! TCTCTAAAGAGATCCGCCCC+TGG + chr4_1:78325499-78325518 Msa0574660:intron 55.0%
GGCCTTTGGTCATGGACACA+TGG - chr4_1:78326122-78326141 None:intergenic 55.0%
! GGTGGGCTTATCTTCAAGGC+TGG + chr4_1:78326347-78326366 Msa0574660:intron 55.0%
GGGCTTATCTTCAAGGCTGG+TGG + chr4_1:78326350-78326369 Msa0574660:CDS 55.0%
CAAAAGCCTTGCCAAACGCC+AGG + chr4_1:78326490-78326509 Msa0574660:CDS 55.0%
CCCGTTGGGAATGTCCTACA+TGG + chr4_1:78326757-78326776 Msa0574660:CDS 55.0%
GGCTGGATGGGATGAAACTG+AGG - chr4_1:78326837-78326856 None:intergenic 55.0%
TCATCCCATCCAGCCCACAT+TGG + chr4_1:78326842-78326861 Msa0574660:CDS 55.0%
!! GCATCCAATGTGGGCTGGAT+GGG - chr4_1:78326849-78326868 None:intergenic 55.0%
!! TGCATCCAATGTGGGCTGGA+TGG - chr4_1:78326850-78326869 None:intergenic 55.0%
GCTTTGCATCCAATGTGGGC+TGG - chr4_1:78326854-78326873 None:intergenic 55.0%
GCCCACATTGGATGCAAAGC+TGG + chr4_1:78326854-78326873 Msa0574660:CDS 55.0%
AAAGCGAGCAGACCCACAAG+TGG - chr4_1:78327022-78327041 None:intergenic 55.0%
CGGCGATTGTTCGGAGCAAG+AGG - chr4_1:78322224-78322243 None:intergenic 60.0%
TTGCTCCGAACAATCGCCGC+CGG + chr4_1:78322225-78322244 Msa0574660:CDS 60.0%
CATGACCGGCGGCGATTGTT+CGG - chr4_1:78322233-78322252 None:intergenic 60.0%
CGTCTGATCAGCGTCTCCAC+TGG + chr4_1:78322316-78322335 Msa0574660:CDS 60.0%
AATGAGGCTTACTCCGGCGG+TGG - chr4_1:78322370-78322389 None:intergenic 60.0%
ACCGGAGGTTACTACGACGC+CGG + chr4_1:78322461-78322480 Msa0574660:CDS 60.0%
CCGGTCTCTCCCAACAGTTG+TGG - chr4_1:78322688-78322707 None:intergenic 60.0%
TGCCACGTCGGATCCTGGAT+GGG - chr4_1:78322753-78322772 None:intergenic 60.0%
! AGTTGCTTTGGGCTGCAGCG+TGG + chr4_1:78323519-78323538 Msa0574660:CDS 60.0%
TGCGCACCCACATGCCTAAC+GGG - chr4_1:78323895-78323914 None:intergenic 60.0%
CTGCGCACCCACATGCCTAA+CGG - chr4_1:78323896-78323915 None:intergenic 60.0%
GGTCGCGTGTTCGAACCTCA+TGG - chr4_1:78325368-78325387 None:intergenic 60.0%
!! GTGGCAGTGGTGTCACCACA+TGG - chr4_1:78326458-78326477 None:intergenic 60.0%
GAGTAAAGCAGGGGTGGCAG+TGG - chr4_1:78326471-78326490 None:intergenic 60.0%
AGCTGACCTGGCGTTTGGCA+AGG - chr4_1:78326499-78326518 None:intergenic 60.0%
TTCCAGAGTCACGGCGCCAG+TGG - chr4_1:78322335-78322354 None:intergenic 65.0%
!! ATTCACGACGGTGCCACCGC+CGG + chr4_1:78322354-78322373 Msa0574660:CDS 65.0%
GCCGGCGTCGTAGTAACCTC+CGG - chr4_1:78322465-78322484 None:intergenic 65.0%
GTCCCATCCAGGATCCGACG+TGG + chr4_1:78322748-78322767 Msa0574660:CDS 65.0%
CTGCCACGTCGGATCCTGGA+TGG - chr4_1:78322754-78322773 None:intergenic 65.0%
CATCCAGGATCCGACGTGGC+AGG + chr4_1:78322752-78322771 Msa0574660:CDS 65.0%
TCACCTGCCACGTCGGATCC+TGG - chr4_1:78322758-78322777 None:intergenic 65.0%
GGCGGTTTCACCTGCCACGT+CGG - chr4_1:78322765-78322784 None:intergenic 65.0%
GGAAGCAGCGGCAAGTGCAG+CGG - chr4_1:78322786-78322805 None:intergenic 65.0%
ATGGGCACACTGCACGGCGT+AGG - chr4_1:78323275-78323294 None:intergenic 65.0%
GGCTGCAGCGTGGTTGCACA+AGG + chr4_1:78323529-78323548 Msa0574660:CDS 65.0%
GCGCACCCACATGCCTAACG+GGG - chr4_1:78323894-78323913 None:intergenic 65.0%
CTCCACTGGCGCCGTGACTC+TGG + chr4_1:78322330-78322349 Msa0574660:CDS 70.0%
AGCAGCGGCAAGTGCAGCGG+CGG - chr4_1:78322783-78322802 None:intergenic 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr4_1:78325473-78325492 Msa0574660:intron 70.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr4_1:78325474-78325493 Msa0574660:intron 70.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr4_1:78325475-78325494 Msa0574660:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr4_1:78325476-78325495 Msa0574660:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 78322096 78327293 78322096 ID=Msa0574660;Name=Msa0574660
chr4_1 mRNA 78322096 78327293 78322096 ID=Msa0574660-mRNA-1;Parent=Msa0574660;Name=Msa0574660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=69|1|1|1|1|1|7|233|494
chr4_1 exon 78322096 78322377 78322096 ID=Msa0574660-mRNA-1:exon:27747;Parent=Msa0574660-mRNA-1
chr4_1 exon 78322452 78322865 78322452 ID=Msa0574660-mRNA-1:exon:27748;Parent=Msa0574660-mRNA-1
chr4_1 exon 78323228 78323320 78323228 ID=Msa0574660-mRNA-1:exon:27749;Parent=Msa0574660-mRNA-1
chr4_1 exon 78323515 78323676 78323515 ID=Msa0574660-mRNA-1:exon:27750;Parent=Msa0574660-mRNA-1
chr4_1 exon 78325900 78326011 78325900 ID=Msa0574660-mRNA-1:exon:27751;Parent=Msa0574660-mRNA-1
chr4_1 exon 78326348 78326511 78326348 ID=Msa0574660-mRNA-1:exon:27752;Parent=Msa0574660-mRNA-1
chr4_1 exon 78326734 78327293 78326734 ID=Msa0574660-mRNA-1:exon:27753;Parent=Msa0574660-mRNA-1
chr4_1 five_prime_UTR 78322096 78322164 78322096 ID=Msa0574660-mRNA-1:five_prime_utr;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78322165 78322377 78322165 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78322452 78322865 78322452 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78323228 78323320 78323228 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78323515 78323676 78323515 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78325900 78326011 78325900 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78326348 78326511 78326348 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 CDS 78326734 78327060 78326734 ID=Msa0574660-mRNA-1:cds;Parent=Msa0574660-mRNA-1
chr4_1 three_prime_UTR 78327061 78327293 78327061 ID=Msa0574660-mRNA-1:three_prime_utr;Parent=Msa0574660-mRNA-1
Gene Sequence

>Msa0574660

ATGGCGCGAAATGCATTATACTCTATTACCACATTTCACGTCCTCACCATACTCCTCCTCTTGCTCCGAACAATCGCCGCCGGTCATGACTTTCACGATGCTCTCCGTAAGAGCATTCTCTTCTTTGAAGGACAACGCTCTGGCAAACTCCCGTCTGATCAGCGTCTCCACTGGCGCCGTGACTCTGGAATTCACGACGGTGCCACCGCCGGAGTGGACTTGACCGGAGGTTACTACGACGCCGGCGACAACATAAAGTTCGGGTTTCCGATGGCGTTTACAACGACGATGTTAGCTTGGAGTGTGATTGATTTTGGAAGAGTAATGGGACCTGAGCTAGGGAACGCGTTGAAATCAGTGAGGTGGGGAACGGATTATCTTTTAAAAGCGACGTCAAAGATAGGTTCCGGCGTGGTGTTTGTTCAAGTCGGTGATCCTTTATCGGACCACAACTGTTGGGAGAGACCGGAAGATATGGATACGTTACGCACAGTTTACAAGATCGATGGGTCCCATCCAGGATCCGACGTGGCAGGTGAAACCGCCGCTGCACTTGCCGCTGCTTCCATCGTGTTCAGATCACGTGATCCTGCTTACTCTAAATTGCTTCTCAATCGTGCCGTTACGGTGTTTGAGTTTGCTGACAGACATCGTGGTGCATACAGTAACAGCCTACGCCGTGCAGTGTGCCCATTTTACTGTGATGTAAACGGTTATCAGGATGAGTTGCTTTGGGCTGCAGCGTGGTTGCACAAGGCCTCGCGTAGACGTCTATACAGAGAATACATTATTCGTAACGAGGTTGTTTTGAGAGCTGGTGACACGATTAATGAGTTTGGTTGGGACAACAAGCATGCTGGGATTAATGTCCTCATTTCTAAGGAGGTGTTAATGGGAAGAGCAAATTATTTTTCTTCGTTCAAAAGAAATGCAGATGAATTTATTTGTTCAACATTGCCTGGATTTTCTCACGCACAAGTTCAATATTCCCCAGGTGGGCTTATCTTCAAGGCTGGTGGAAGTAACATGCAACATGTAACGTCCTTGTCCTTCCTGTTACTAGCTTATTCCAATTACCTAAGCCATGCCAATAAGGTTGTGCCATGTGGTGACACCACTGCCACCCCTGCTTTACTCAAAAGCCTTGCCAAACGCCAGGTTAACTACATTCTTGGGGATAACCCGTTGGGAATGTCCTACATGGTTGGTTATGGTAAACGCTACCCACAGAGGATACACCATAGAGGAAGCTCAATTCCCTCAGTTTCATCCCATCCAGCCCACATTGGATGCAAAGCTGGATCTCAATATTTCTTTAGCCCAAACCCTAACCCAAATGTCTTGGTTGGAGCTGTAGTTGGTGGGCCTACCAACACTACAGATTCGTTCCCTGATTCCAGGCCTTTCTATCAGCAGTCTGAGCCCACGACATATATCAATGCACCACTTGTGGGTCTGCTCGCTTTCTTTTCAGCTCATCCTTGA
Protein sequence

>Msa0574660

MARNALYSITTFHVLTILLLLLRTIAAGHDFHDALRKSILFFEGQRSGKLPSDQRLHWRRDSGIHDGATAGVDLTGGYYDAGDNIKFGFPMAFTTTMLAWSVIDFGRVMGPELGNALKSVRWGTDYLLKATSKIGSGVVFVQVGDPLSDHNCWERPEDMDTLRTVYKIDGSHPGSDVAGETAAALAAASIVFRSRDPAYSKLLLNRAVTVFEFADRHRGAYSNSLRRAVCPFYCDVNGYQDELLWAAAWLHKASRRRLYREYIIRNEVVLRAGDTINEFGWDNKHAGINVLISKEVLMGRANYFSSFKRNADEFICSTLPGFSHAQVQYSPGGLIFKAGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGDTTATPALLKSLAKRQVNYILGDNPLGMSYMVGYGKRYPQRIHHRGSSIPSVSSHPAHIGCKAGSQYFFSPNPNPNVLVGAVVGGPTNTTDSFPDSRPFYQQSEPTTYINAPLVGLLAFFSAHP*