Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462990 | XP_003600850.1 | 100.000 | 194 | 0 | 0 | 1 | 194 | 1 | 194 | 2.85e-139 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462990 | sp|Q54YG5|TPPC5_DICDI | 60.000 | 180 | 72 | 0 | 12 | 191 | 7 | 186 | 3.34e-79 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462990 | B7FMS6 | 100.000 | 194 | 0 | 0 | 1 | 194 | 1 | 194 | 1.36e-139 | 396 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0462990 | 0.829614 | 4.665620e-55 | -8.615850e-47 |
| Msa0032840 | Msa0462990 | -0.801861 | 7.374604e-49 | -8.615850e-47 |
| Msa0044020 | Msa0462990 | 0.802029 | 6.811432e-49 | -8.615850e-47 |
| Msa0057140 | Msa0462990 | 0.803208 | 3.889961e-49 | -8.615850e-47 |
| Msa0057710 | Msa0462990 | 0.804831 | 1.788190e-49 | -8.615850e-47 |
| Msa0069330 | Msa0462990 | 0.815326 | 9.792265e-52 | -8.615850e-47 |
| Msa0073670 | Msa0462990 | 0.812168 | 4.856700e-51 | -8.615850e-47 |
| Msa0076000 | Msa0462990 | 0.809250 | 2.076095e-50 | -8.615850e-47 |
| Msa0104550 | Msa0462990 | 0.807723 | 4.397968e-50 | -8.615850e-47 |
| Msa0110970 | Msa0462990 | 0.801515 | 8.681757e-49 | -8.615850e-47 |
| Msa0115370 | Msa0462990 | 0.804316 | 2.290223e-49 | -8.615850e-47 |
| Msa0124340 | Msa0462990 | 0.816419 | 5.584981e-52 | -8.615850e-47 |
| Msa0130240 | Msa0462990 | 0.828249 | 9.984943e-55 | -8.615850e-47 |
| Msa0152840 | Msa0462990 | 0.805429 | 1.340510e-49 | -8.615850e-47 |
| Msa0167480 | Msa0462990 | 0.815088 | 1.105843e-51 | -8.615850e-47 |
| Msa0174770 | Msa0462990 | 0.809371 | 1.955371e-50 | -8.615850e-47 |
| Msa0181610 | Msa0462990 | 0.803018 | 4.258835e-49 | -8.615850e-47 |
| Msa0186890 | Msa0462990 | 0.821651 | 3.605376e-53 | -8.615850e-47 |
| Msa0199690 | Msa0462990 | 0.809479 | 1.853846e-50 | -8.615850e-47 |
| Msa0205850 | Msa0462990 | 0.802461 | 5.549483e-49 | -8.615850e-47 |
| Msa0225180 | Msa0462990 | 0.805070 | 1.594368e-49 | -8.615850e-47 |
| Msa0226460 | Msa0462990 | 0.803093 | 4.109990e-49 | -8.615850e-47 |
| Msa0230550 | Msa0462990 | -0.801207 | 1.003895e-48 | -8.615850e-47 |
| Msa0392940 | Msa0462990 | 0.802116 | 6.533782e-49 | -8.615850e-47 |
| Msa0394400 | Msa0462990 | 0.812483 | 4.145359e-51 | -8.615850e-47 |
| Msa0402330 | Msa0462990 | 0.838679 | 2.491635e-57 | -8.615850e-47 |
| Msa0403190 | Msa0462990 | 0.819779 | 9.710705e-53 | -8.615850e-47 |
| Msa0410500 | Msa0462990 | 0.804680 | 1.923510e-49 | -8.615850e-47 |
| Msa0413450 | Msa0462990 | 0.814190 | 1.747449e-51 | -8.615850e-47 |
| Msa0416400 | Msa0462990 | 0.819868 | 9.261917e-53 | -8.615850e-47 |
| Msa0431770 | Msa0462990 | 0.820345 | 7.205903e-53 | -8.615850e-47 |
| Msa0462990 | Msa0469910 | -0.811729 | 6.050521e-51 | -8.615850e-47 |
| Msa0462990 | Msa0474950 | 0.814478 | 1.509929e-51 | -8.615850e-47 |
| Msa0462990 | Msa0481460 | 0.804708 | 1.897792e-49 | -8.615850e-47 |
| Msa0462990 | Msa0490750 | 0.816194 | 6.269978e-52 | -8.615850e-47 |
| Msa0462990 | Msa0505150 | 0.805291 | 1.432790e-49 | -8.615850e-47 |
| Msa0462990 | Msa0508590 | 0.816570 | 5.167302e-52 | -8.615850e-47 |
| Msa0462990 | Msa0508630 | 0.808596 | 2.864983e-50 | -8.615850e-47 |
| Msa0462990 | Msa0515640 | 0.806762 | 7.029040e-50 | -8.615850e-47 |
| Msa0462990 | Msa0519130 | 0.806482 | 8.052359e-50 | -8.615850e-47 |
| Msa0462990 | Msa0541860 | 0.821549 | 3.805229e-53 | -8.615850e-47 |
| Msa0462990 | Msa0542160 | 0.808142 | 3.581607e-50 | -8.615850e-47 |
| Msa0462990 | Msa0552810 | 0.805275 | 1.444080e-49 | -8.615850e-47 |
| Msa0462990 | Msa0555910 | 0.803155 | 3.988922e-49 | -8.615850e-47 |
| Msa0462990 | Msa0560470 | 0.809402 | 1.926230e-50 | -8.615850e-47 |
| Msa0462990 | Msa0561430 | 0.802343 | 5.869155e-49 | -8.615850e-47 |
| Msa0462990 | Msa0581070 | 0.822895 | 1.854702e-53 | -8.615850e-47 |
| Msa0462990 | Msa0606810 | 0.810904 | 9.139775e-51 | -8.615850e-47 |
| Msa0462990 | Msa0610390 | 0.802419 | 5.660599e-49 | -8.615850e-47 |
| Msa0462990 | Msa0623700 | 0.819905 | 9.084561e-53 | -8.615850e-47 |
| Msa0462990 | Msa0639120 | 0.806460 | 8.137994e-50 | -8.615850e-47 |
| Msa0462990 | Msa0650920 | 0.803475 | 3.425566e-49 | -8.615850e-47 |
| Msa0462990 | Msa0652300 | 0.800116 | 1.676279e-48 | -8.615850e-47 |
| Msa0462990 | Msa0658390 | 0.806699 | 7.244653e-50 | -8.615850e-47 |
| Msa0462990 | Msa0663900 | 0.805894 | 1.071018e-49 | -8.615850e-47 |
| Msa0462990 | Msa0664760 | 0.800885 | 1.168230e-48 | -8.615850e-47 |
| Msa0462990 | Msa0664960 | 0.802357 | 5.829663e-49 | -8.615850e-47 |
| Msa0462990 | Msa0680240 | 0.811369 | 7.248227e-51 | -8.615850e-47 |
| Msa0462990 | Msa0687630 | 0.815245 | 1.020504e-51 | -8.615850e-47 |
| Msa0462990 | Msa0692940 | 0.802268 | 6.079894e-49 | -8.615850e-47 |
| Msa0462990 | Msa0702340 | 0.817628 | 2.987614e-52 | -8.615850e-47 |
| Msa0462990 | Msa0702590 | 0.818298 | 2.108444e-52 | -8.615850e-47 |
| Msa0462990 | Msa0702660 | 0.820008 | 8.606772e-53 | -8.615850e-47 |
| Msa0462990 | Msa0703230 | 0.823197 | 1.576572e-53 | -8.615850e-47 |
| Msa0462990 | Msa0716410 | 0.804895 | 1.734324e-49 | -8.615850e-47 |
| Msa0462990 | Msa0734960 | 0.811930 | 5.473153e-51 | -8.615850e-47 |
| Msa0462990 | Msa0743800 | 0.805056 | 1.605026e-49 | -8.615850e-47 |
| Msa0462990 | Msa0793720 | 0.800227 | 1.591042e-48 | -8.615850e-47 |
| Msa0462990 | Msa0814250 | 0.833260 | 5.907917e-56 | -8.615850e-47 |
| Msa0462990 | Msa0814320 | 0.811922 | 5.494685e-51 | -8.615850e-47 |
| Msa0462990 | Msa0818170 | 0.816631 | 5.007004e-52 | -8.615850e-47 |
| Msa0462990 | Msa0824640 | 0.835283 | 1.835883e-56 | -8.615850e-47 |
| Msa0462990 | Msa0864010 | 0.834760 | 2.487706e-56 | -8.615850e-47 |
| Msa0462990 | Msa0869100 | 0.802790 | 4.746057e-49 | -8.615850e-47 |
| Msa0462990 | Msa0959840 | 0.801721 | 7.876535e-49 | -8.615850e-47 |
| Msa0462990 | Msa0962240 | 0.805005 | 1.644899e-49 | -8.615850e-47 |
| Msa0462990 | Msa0967370 | 0.829416 | 5.212361e-55 | -8.615850e-47 |
| Msa0462990 | Msa0980940 | 0.811315 | 7.443495e-51 | -8.615850e-47 |
| Msa0462990 | Msa0986920 | 0.802052 | 6.736721e-49 | -8.615850e-47 |
| Msa0462990 | Msa0993530 | 0.807414 | 5.114978e-50 | -8.615850e-47 |
| Msa0462990 | Msa1004420 | 0.819509 | 1.119072e-52 | -8.615850e-47 |
| Msa0462990 | Msa1041530 | 0.803966 | 2.708848e-49 | -8.615850e-47 |
| Msa0462990 | Msa1082700 | 0.826138 | 3.197179e-54 | -8.615850e-47 |
| Msa0462990 | Msa1083210 | 0.802491 | 5.469985e-49 | -8.615850e-47 |
| Msa0462990 | Msa1083880 | 0.833242 | 5.967101e-56 | -8.615850e-47 |
| Msa0462990 | Msa1089840 | 0.812618 | 3.871344e-51 | -8.615850e-47 |
| Msa0462990 | Msa1126770 | 0.816849 | 4.472989e-52 | -8.615850e-47 |
| Msa0462990 | Msa1134110 | 0.809208 | 2.119630e-50 | -8.615850e-47 |
| Msa0462990 | Msa1172640 | 0.800101 | 1.687973e-48 | -8.615850e-47 |
| Msa0462990 | Msa1174530 | 0.811561 | 6.582922e-51 | -8.615850e-47 |
| Msa0462990 | Msa1183660 | 0.811408 | 7.107355e-51 | -8.615850e-47 |
| Msa0462990 | Msa1184370 | 0.837243 | 5.832081e-57 | -8.615850e-47 |
| Msa0462990 | Msa1198530 | 0.809500 | 1.834855e-50 | -8.615850e-47 |
| Msa0462990 | Msa1201830 | 0.806171 | 9.361610e-50 | -8.615850e-47 |
| Msa0462990 | Msa1218590 | 0.811518 | 6.726632e-51 | -8.615850e-47 |
| Msa0462990 | Msa1224840 | 0.818676 | 1.731491e-52 | -8.615850e-47 |
| Msa0462990 | Msa1227690 | 0.833886 | 4.121736e-56 | -8.615850e-47 |
| Msa0462990 | Msa1228890 | 0.806694 | 7.262289e-50 | -8.615850e-47 |
| Msa0462990 | Msa1235250 | 0.816900 | 4.356568e-52 | -8.615850e-47 |
| Msa0462990 | Msa1236100 | 0.800004 | 1.766035e-48 | -8.615850e-47 |
| Msa0462990 | Msa1253810 | 0.813729 | 2.209287e-51 | -8.615850e-47 |
| Msa0462990 | Msa1269300 | 0.810933 | 9.009161e-51 | -8.615850e-47 |
| Msa0462990 | Msa1283990 | 0.802002 | 6.897545e-49 | -8.615850e-47 |
| Msa0462990 | Msa1294840 | 0.807876 | 4.080152e-50 | -8.615850e-47 |
| Msa0462990 | Msa1307950 | 0.810792 | 9.662946e-51 | -8.615850e-47 |
| Msa0462990 | Msa1310690 | 0.807363 | 5.243064e-50 | -8.615850e-47 |
| Msa0462990 | Msa1316830 | 0.806847 | 6.741411e-50 | -8.615850e-47 |
| Msa0462990 | Msa1365150 | 0.812105 | 5.012836e-51 | -8.615850e-47 |
| Msa0462990 | Msa1367880 | 0.806175 | 9.347045e-50 | -8.615850e-47 |
| Msa0462990 | Msa1368210 | 0.806523 | 7.891471e-50 | -8.615850e-47 |
| Msa0462990 | Msa1372310 | 0.800368 | 1.489589e-48 | -8.615850e-47 |
| Msa0462990 | Msa1380970 | 0.801780 | 7.662723e-49 | -8.615850e-47 |
| Msa0462990 | Msa1397810 | 0.825031 | 5.848860e-54 | -8.615850e-47 |
| Msa0462990 | Msa1398860 | 0.824962 | 6.074576e-54 | -8.615850e-47 |
| Msa0462990 | Msa1404190 | 0.807891 | 4.049946e-50 | -8.615850e-47 |
| Msa0462990 | Msa1438640 | 0.817999 | 2.463553e-52 | -8.615850e-47 |
| Msa0462990 | Msa1442850 | 0.824083 | 9.779894e-54 | -8.615850e-47 |
| Msa0462990 | Msa1443930 | 0.817760 | 2.790077e-52 | -8.615850e-47 |
| Msa0462990 | Msa1465080 | 0.820651 | 6.128359e-53 | -8.615850e-47 |
| Msa0239450 | Msa0462990 | 0.809330 | 1.995892e-50 | -8.615850e-47 |
| Msa0242680 | Msa0462990 | 0.809455 | 1.876262e-50 | -8.615850e-47 |
| Msa0280430 | Msa0462990 | 0.807752 | 4.335739e-50 | -8.615850e-47 |
| Msa0300120 | Msa0462990 | 0.816863 | 4.440045e-52 | -8.615850e-47 |
| Msa0355270 | Msa0462990 | 0.836092 | 1.145843e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462990 | MtrunA17_Chr3g0113071 | 100.000 | 194 | 0 | 0 | 1 | 194 | 1 | 194 | 2.62e-143 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462990 | AT5G58030.1 | 91.753 | 194 | 16 | 0 | 1 | 194 | 1 | 194 | 9.88e-133 | 370 |
Find 71 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCATATCTTTCTATAT+TGG | 0.256484 | 3_3:-62241155 | None:intergenic |
| TTCTATTGAACAGGGTGTTT+TGG | 0.274875 | 3_3:+62240855 | Msa0462990:intron |
| AAAATGCTAACGAATGTCTA+AGG | 0.279154 | 3_3:-62236901 | None:intergenic |
| GTGTTTAGTGGGTGAGTTAG+AGG | 0.313349 | 3_3:+62237032 | Msa0462990:five_prime_UTR |
| CAAACACAGGTTGACAATAT+TGG | 0.336773 | 3_3:+62237655 | Msa0462990:CDS |
| AGTGGGTGAGTTAGAGGAAG+AGG | 0.345975 | 3_3:+62237038 | Msa0462990:five_prime_UTR |
| CATTTGTTGCTGGAATAGTT+CGG | 0.351742 | 3_3:+62240753 | Msa0462990:CDS |
| AACTGTGGCGCATTTGTTGC+TGG | 0.355746 | 3_3:+62240743 | Msa0462990:CDS |
| ACAGTGTGGAAAGTACTATT+TGG | 0.365299 | 3_3:+62239299 | Msa0462990:CDS |
| AGGTCGTTGTTGACCTTCCA+TGG | 0.367963 | 3_3:-62240920 | None:intergenic |
| TTAAACGTTCCCATGTCCTT+GGG | 0.392814 | 3_3:-62240722 | None:intergenic |
| TGTACGTTATCCTTTGAAGT+TGG | 0.407183 | 3_3:+62241262 | Msa0462990:three_prime_UTR |
| AGGATGCTGGATATGCTGTT+GGG | 0.409780 | 3_3:+62237985 | Msa0462990:CDS |
| GACTAAATTACTTGTTTACT+AGG | 0.414366 | 3_3:-62240607 | None:intergenic |
| GTACGTTATCCTTTGAAGTT+GGG | 0.420596 | 3_3:+62241263 | Msa0462990:three_prime_UTR |
| CAATATTGTCAACCTGTGTT+TGG | 0.420922 | 3_3:-62237654 | None:intergenic |
| AACACCAATATAGAAAGATA+TGG | 0.436241 | 3_3:+62241151 | Msa0462990:three_prime_UTR |
| TTTGATAAAATTTGCTGAAG+AGG | 0.436775 | 3_3:+62240954 | Msa0462990:CDS |
| GAGGATGCTGGATATGCTGT+TGG | 0.441234 | 3_3:+62237984 | Msa0462990:CDS |
| GTTAAACGTTCCCATGTCCT+TGG | 0.445038 | 3_3:-62240723 | None:intergenic |
| TGAATACATGATTAGTGAAA+AGG | 0.447509 | 3_3:+62240580 | Msa0462990:CDS |
| AAATGAGCTGTTACAACAGC+TGG | 0.448130 | 3_3:-62240892 | None:intergenic |
| TCGGTCTTGCCCTTGTTAAG+AGG | 0.448508 | 3_3:-62237115 | None:intergenic |
| ATTTGTTGCTGGAATAGTTC+GGG | 0.451193 | 3_3:+62240754 | Msa0462990:CDS |
| TTACTTAGAGAAGCAAGATT+AGG | 0.452308 | 3_3:+62241082 | Msa0462990:CDS |
| GTTATCCTGCATATTGATTG+AGG | 0.458635 | 3_3:+62241352 | Msa0462990:three_prime_UTR |
| AAACAGTAGCGAGATCAAAT+CGG | 0.473169 | 3_3:+62236993 | Msa0462990:five_prime_UTR |
| CATTTCTATCCCCAAGGACA+TGG | 0.473249 | 3_3:+62240712 | Msa0462990:CDS |
| AACAGTAGCGAGATCAAATC+GGG | 0.474458 | 3_3:+62236994 | Msa0462990:five_prime_UTR |
| ACCAGGACTGAGGTGTTTAG+TGG | 0.479802 | 3_3:+62237020 | Msa0462990:five_prime_UTR |
| AGGAAGAGGAAGAAGATGAT+CGG | 0.481759 | 3_3:+62237052 | Msa0462990:exon |
| CACATATCAAATGGATAGGC+TGG | 0.485179 | 3_3:-62241215 | None:intergenic |
| CAGAAGGGAGACACGATTGT+TGG | 0.499306 | 3_3:+62239253 | Msa0462990:CDS |
| AGAAGGGAGACACGATTGTT+GGG | 0.501743 | 3_3:+62239254 | Msa0462990:CDS |
| CTGTCCAGATTGGAGGATGC+TGG | 0.503027 | 3_3:+62237972 | Msa0462990:intron |
| AGGAAGAAGATGATCGGAGT+AGG | 0.513264 | 3_3:+62237058 | Msa0462990:exon |
| AGTTTGAAGCACATATCAAA+TGG | 0.516841 | 3_3:-62241224 | None:intergenic |
| GTTATCCTCAATCAATATGC+AGG | 0.526101 | 3_3:-62241357 | None:intergenic |
| ATATTAGGTAGCTGACTCAC+TGG | 0.527018 | 3_3:+62240535 | Msa0462990:intron |
| GAAGATGATCGGAGTAGGAA+AGG | 0.527886 | 3_3:+62237063 | Msa0462990:exon |
| GCTGCTTTGCCACAGAGATA+AGG | 0.529706 | 3_3:+62238022 | Msa0462990:CDS |
| AGAATAATTCCCAACTTCAA+AGG | 0.532143 | 3_3:-62241272 | None:intergenic |
| CCCACTAAACACCTCAGTCC+TGG | 0.532214 | 3_3:-62237021 | None:intergenic |
| ATGTAAACTGTCCAGATTGG+AGG | 0.538647 | 3_3:+62237965 | Msa0462990:intron |
| GAGATCAAATCGGGTTAACC+AGG | 0.547281 | 3_3:+62237003 | Msa0462990:five_prime_UTR |
| GTGGAAAGTACTATTTGGAA+AGG | 0.553417 | 3_3:+62239304 | Msa0462990:CDS |
| GAAGCACATATCAAATGGAT+AGG | 0.554698 | 3_3:-62241219 | None:intergenic |
| CCTCGATAAACCTCTTAACA+AGG | 0.555681 | 3_3:+62237105 | Msa0462990:CDS |
| GTAGCTGACTCACTGGAGAA+AGG | 0.557456 | 3_3:+62240542 | Msa0462990:CDS |
| AACCAAATAAAAGTTCCTGA+TGG | 0.559167 | 3_3:+62241416 | Msa0462990:three_prime_UTR |
| GGATGCTGGATATGCTGTTG+GGG | 0.561242 | 3_3:+62237986 | Msa0462990:CDS |
| TAGATTCATTTCTATCCCCA+AGG | 0.562040 | 3_3:+62240706 | Msa0462990:intron |
| ATATTGGCGAGCTCGAACGA+AGG | 0.562870 | 3_3:+62237671 | Msa0462990:CDS |
| GGTCGTTGTTGACCTTCCAT+GGG | 0.567220 | 3_3:-62240919 | None:intergenic |
| TTTATCAAAATTGTGGTCCG+AGG | 0.572560 | 3_3:-62240940 | None:intergenic |
| TGAAACTGCAGGGAAACAGA+AGG | 0.577092 | 3_3:+62239237 | Msa0462990:intron |
| CCAGGACTGAGGTGTTTAGT+GGG | 0.589410 | 3_3:+62237021 | Msa0462990:five_prime_UTR |
| ATTTCTATCCCCAAGGACAT+GGG | 0.595302 | 3_3:+62240713 | Msa0462990:CDS |
| AAATGCTAACGAATGTCTAA+GGG | 0.614752 | 3_3:-62236900 | None:intergenic |
| TTGGTTGTACTGAACAAGCT+CGG | 0.616639 | 3_3:-62237635 | None:intergenic |
| CCTTGTTAAGAGGTTTATCG+AGG | 0.629657 | 3_3:-62237105 | None:intergenic |
| GAAACTGCAGGGAAACAGAA+GGG | 0.629792 | 3_3:+62239238 | Msa0462990:intron |
| TGGAAGGTCAACAACGACCT+CGG | 0.638598 | 3_3:+62240923 | Msa0462990:CDS |
| TAAACGTTCCCATGTCCTTG+GGG | 0.643297 | 3_3:-62240721 | None:intergenic |
| GTAGGAAAGGTAAAGCAGTA+CGG | 0.653670 | 3_3:+62237076 | Msa0462990:CDS |
| CTCGATAAACCTCTTAACAA+GGG | 0.657030 | 3_3:+62237106 | Msa0462990:CDS |
| GACATGGGAACGTTTAACTG+TGG | 0.678943 | 3_3:+62240728 | Msa0462990:CDS |
| TGTTCAGTACAACCAAACAC+AGG | 0.699623 | 3_3:+62237642 | Msa0462990:CDS |
| TCTTAACAAGGGCAAGACCG+AGG | 0.706055 | 3_3:+62237117 | Msa0462990:CDS |
| AGCAACATACCTTATCTCTG+TGG | 0.713795 | 3_3:-62238031 | None:intergenic |
| AATCGGGTTAACCAGGACTG+AGG | 0.718926 | 3_3:+62237010 | Msa0462990:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACAATAATAAAACAT+TGG | - | chr3_3:62237914-62237933 | None:intergenic | 10.0% |
| !!! | ATAACTGATATTAAATTTTA+AGG | + | chr3_3:62238088-62238107 | Msa0462990:intron | 10.0% |
| !! | TCTATTTGATTATAATTATT+TGG | + | chr3_3:62238970-62238989 | Msa0462990:intron | 10.0% |
| !! | TAATATAATAACAAAAAAAC+AGG | - | chr3_3:62240521-62240540 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTGTTATTATATT+AGG | + | chr3_3:62240520-62240539 | Msa0462990:intron | 10.0% |
| !! | GAAATTAAATTATACAATTC+TGG | + | chr3_3:62238110-62238129 | Msa0462990:intron | 15.0% |
| !!! | TTTTTATAGTAGAAATGAAA+AGG | + | chr3_3:62238862-62238881 | Msa0462990:intron | 15.0% |
| !!! | TTTTATAGTAGAAATGAAAA+GGG | + | chr3_3:62238863-62238882 | Msa0462990:intron | 15.0% |
| !!! | ATAAAAGCAAATTTTGATAA+AGG | - | chr3_3:62239336-62239355 | None:intergenic | 15.0% |
| !! | TCTATAAATATTATGATTGT+TGG | + | chr3_3:62239642-62239661 | Msa0462990:intron | 15.0% |
| !! | TTATAAAAATAGGTCATATT+TGG | - | chr3_3:62239985-62240004 | None:intergenic | 15.0% |
| !! | AAGTCTTCTATTATAAAAAT+AGG | - | chr3_3:62239995-62240014 | None:intergenic | 15.0% |
| !! | TATATAATCAGTGTTAAAAA+TGG | - | chr3_3:62240221-62240240 | None:intergenic | 15.0% |
| !!! | TATATTTTTTTATACAGTCT+TGG | + | chr3_3:62240336-62240355 | Msa0462990:intron | 15.0% |
| !! | AAAATACTCAGAAAGAAAAA+AGG | + | chr3_3:62236967-62236986 | Msa0462990:five_prime_UTR | 20.0% |
| !! | AAATACTCAGAAAGAAAAAA+GGG | + | chr3_3:62236968-62236987 | Msa0462990:five_prime_UTR | 20.0% |
| !! | ATGTAAATATCCATAAAAGT+GGG | - | chr3_3:62237430-62237449 | None:intergenic | 20.0% |
| !! | AATGTAAATATCCATAAAAG+TGG | - | chr3_3:62237431-62237450 | None:intergenic | 20.0% |
| !! | ACACAAAAAGAAAACTAAAT+TGG | - | chr3_3:62237749-62237768 | None:intergenic | 20.0% |
| !! | GACTTTATATCTAATTAGAA+TGG | + | chr3_3:62238275-62238294 | Msa0462990:intron | 20.0% |
| !! | GTTTGTAAACTTTATTATGA+CGG | + | chr3_3:62238372-62238391 | Msa0462990:intron | 20.0% |
| !! | TAAAATATAGAATATGATGC+TGG | - | chr3_3:62238801-62238820 | None:intergenic | 20.0% |
| !! | TAGAATATAAAGCATATAAC+TGG | - | chr3_3:62238954-62238973 | None:intergenic | 20.0% |
| !!! | GTTAATTTAGAGTGTAAAAT+AGG | + | chr3_3:62239487-62239506 | Msa0462990:intron | 20.0% |
| !! | AGAGTATAACTTATATTGAA+AGG | - | chr3_3:62240061-62240080 | None:intergenic | 20.0% |
| !! | TATTATTCTTACACTTAGAT+TGG | + | chr3_3:62240247-62240266 | Msa0462990:intron | 20.0% |
| !! | AAAACATAAGAAATCTCAAA+AGG | - | chr3_3:62240420-62240439 | None:intergenic | 20.0% |
| !!! | TTGAGATTTCTTATGTTTTT+TGG | + | chr3_3:62240421-62240440 | Msa0462990:intron | 20.0% |
| !!! | GTTATTTGATTTTTAGAGAA+AGG | + | chr3_3:62240811-62240830 | Msa0462990:intron | 20.0% |
| !!! | AGCAAATTTTATCAAAATTG+TGG | - | chr3_3:62240950-62240969 | None:intergenic | 20.0% |
| ! | TTGAAAGAAAATGCATTTGA+GGG | - | chr3_3:62237161-62237180 | None:intergenic | 25.0% |
| ! | GAATTGGTGAAGAATTAATT+TGG | - | chr3_3:62237230-62237249 | None:intergenic | 25.0% |
| ! | TACATTAATGATAAGGTAAG+CGG | - | chr3_3:62237280-62237299 | None:intergenic | 25.0% |
| ! | CCAAACATACATTAATGATA+AGG | - | chr3_3:62237287-62237306 | None:intergenic | 25.0% |
| ! | CCTTATCATTAATGTATGTT+TGG | + | chr3_3:62237284-62237303 | Msa0462990:intron | 25.0% |
| !! | TTTTACTTTCAGAATTGCTT+TGG | + | chr3_3:62237334-62237353 | Msa0462990:intron | 25.0% |
| ! | AAAACTAAATTGGCATATTC+AGG | - | chr3_3:62237739-62237758 | None:intergenic | 25.0% |
| ! | CTTCTGTTTATGATAAAAGT+AGG | + | chr3_3:62237787-62237806 | Msa0462990:intron | 25.0% |
| ! | AATCTTGCAAAAGTTTACTT+TGG | + | chr3_3:62238060-62238079 | Msa0462990:intron | 25.0% |
| ! | ATAAAAAACTTATTGAGTCC+AGG | - | chr3_3:62238642-62238661 | None:intergenic | 25.0% |
| ! | GGTGGAAAAAATATATTGAA+TGG | - | chr3_3:62239033-62239052 | None:intergenic | 25.0% |
| !!! | ATATATTTTTTCCACCATCT+TGG | + | chr3_3:62239037-62239056 | Msa0462990:intron | 25.0% |
| !!! | AATATTATTCTGAAACTGCA+GGG | + | chr3_3:62239227-62239246 | Msa0462990:intron | 25.0% |
| ! | GTCCAACTTATGATAAATTA+GGG | - | chr3_3:62239369-62239388 | None:intergenic | 25.0% |
| ! | TGTCCAACTTATGATAAATT+AGG | - | chr3_3:62239370-62239389 | None:intergenic | 25.0% |
| !! | TAATTTATCATAAGTTGGAC+AGG | + | chr3_3:62239369-62239388 | Msa0462990:intron | 25.0% |
| ! | TCTAAATTAACATACTACAC+CGG | - | chr3_3:62239478-62239497 | None:intergenic | 25.0% |
| ! | AGATATTGTTTAACATCTAC+AGG | - | chr3_3:62239780-62239799 | None:intergenic | 25.0% |
| !!! | AATTCTAGTTTCACTATTGA+GGG | + | chr3_3:62239854-62239873 | Msa0462990:intron | 25.0% |
| ! | AATAGCAGGAAAAAAAATCT+AGG | + | chr3_3:62239920-62239939 | Msa0462990:intron | 25.0% |
| ! | ATAGCAGGAAAAAAAATCTA+GGG | + | chr3_3:62239921-62239940 | Msa0462990:intron | 25.0% |
| ! | TATAATAGAAGACTTAGACT+TGG | + | chr3_3:62240000-62240019 | Msa0462990:intron | 25.0% |
| ! | CATGTTGCATACAAATAAAA+AGG | - | chr3_3:62240095-62240114 | None:intergenic | 25.0% |
| ! | GAAATAAGTCAACTATACAT+TGG | - | chr3_3:62240122-62240141 | None:intergenic | 25.0% |
| ! | AATGACAAAATTATACAGGT+TGG | - | chr3_3:62240368-62240387 | None:intergenic | 25.0% |
| ! | ACTCAATGACAAAATTATAC+AGG | - | chr3_3:62240372-62240391 | None:intergenic | 25.0% |
| ! | TGAATACATGATTAGTGAAA+AGG | + | chr3_3:62240580-62240599 | Msa0462990:CDS | 25.0% |
| ! | GACTAAATTACTTGTTTACT+AGG | - | chr3_3:62240610-62240629 | None:intergenic | 25.0% |
| ! | AAAATCAAATAACTAGCTGA+TGG | - | chr3_3:62240804-62240823 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTCTATTGAAC+AGG | + | chr3_3:62240846-62240865 | Msa0462990:intron | 25.0% |
| !!! | TTGTTTTGTTCTATTGAACA+GGG | + | chr3_3:62240847-62240866 | Msa0462990:intron | 25.0% |
| !!! | TTTGATAAAATTTGCTGAAG+AGG | + | chr3_3:62240954-62240973 | Msa0462990:CDS | 25.0% |
| ! | AACACCAATATAGAAAGATA+TGG | + | chr3_3:62241151-62241170 | Msa0462990:three_prime_UTR | 25.0% |
| ! | AGTTCCATATCTTTCTATAT+TGG | - | chr3_3:62241158-62241177 | None:intergenic | 25.0% |
| !!! | ACTTTTATTTGGTTACTTAC+TGG | - | chr3_3:62241410-62241429 | None:intergenic | 25.0% |
| ! | AGACATTCGTTAGCATTTTT+CGG | + | chr3_3:62236905-62236924 | Msa0462990:five_prime_UTR | 30.0% |
| GTTGAAAGAAAATGCATTTG+AGG | - | chr3_3:62237162-62237181 | None:intergenic | 30.0% | |
| ! | AGCAAGATCTATAGTATTGA+AGG | - | chr3_3:62237189-62237208 | None:intergenic | 30.0% |
| CAATTCTCTTCAACTTCAAT+GGG | + | chr3_3:62237244-62237263 | Msa0462990:intron | 30.0% | |
| AATTCTCTTCAACTTCAATG+GGG | + | chr3_3:62237245-62237264 | Msa0462990:intron | 30.0% | |
| ACATTAATGATAAGGTAAGC+GGG | - | chr3_3:62237279-62237298 | None:intergenic | 30.0% | |
| !! | TATCCTTTAACCCACTTTTA+TGG | + | chr3_3:62237417-62237436 | Msa0462990:intron | 30.0% |
| !! | TATCCATAAAAGTGGGTTAA+AGG | - | chr3_3:62237423-62237442 | None:intergenic | 30.0% |
| AATAGTAGTACATGTACGTT+TGG | - | chr3_3:62237524-62237543 | None:intergenic | 30.0% | |
| TAAACAGAAGAAGAACATAC+AGG | - | chr3_3:62237777-62237796 | None:intergenic | 30.0% | |
| AAGTAGGTTCTCTTTCATTA+AGG | + | chr3_3:62237803-62237822 | Msa0462990:intron | 30.0% | |
| ! | CATTTTCACTTCATGTGAAT+TGG | + | chr3_3:62237870-62237889 | Msa0462990:intron | 30.0% |
| GATATAATTGAGTGCAAAGA+GGG | - | chr3_3:62238344-62238363 | None:intergenic | 30.0% | |
| AGATATAATTGAGTGCAAAG+AGG | - | chr3_3:62238345-62238364 | None:intergenic | 30.0% | |
| AGTAATGTGTCAAGAGAAAT+TGG | - | chr3_3:62238462-62238481 | None:intergenic | 30.0% | |
| CCTAATGTAGTAATATACCA+GGG | - | chr3_3:62238490-62238509 | None:intergenic | 30.0% | |
| ACCTAATGTAGTAATATACC+AGG | - | chr3_3:62238491-62238510 | None:intergenic | 30.0% | |
| AACATGATAGATCCTTCAAA+GGG | - | chr3_3:62238530-62238549 | None:intergenic | 30.0% | |
| !!! | GCACAAAAAAGCATGTTTTT+TGG | - | chr3_3:62238735-62238754 | None:intergenic | 30.0% |
| TTATCGTATGACATATGACT+TGG | + | chr3_3:62238831-62238850 | Msa0462990:intron | 30.0% | |
| TATCGTATGACATATGACTT+GGG | + | chr3_3:62238832-62238851 | Msa0462990:intron | 30.0% | |
| AACTCATCTAATACAATGTC+TGG | + | chr3_3:62238907-62238926 | Msa0462990:intron | 30.0% | |
| ACTCATCTAATACAATGTCT+GGG | + | chr3_3:62238908-62238927 | Msa0462990:intron | 30.0% | |
| !!! | CATATAACTGGTTTTGAAAC+TGG | - | chr3_3:62238942-62238961 | None:intergenic | 30.0% |
| !! | AATTATTTGGCATCGACAAT+TGG | + | chr3_3:62238983-62239002 | Msa0462990:intron | 30.0% |
| AGTTGATCGTCTGTATATAT+TGG | + | chr3_3:62239116-62239135 | Msa0462990:intron | 30.0% | |
| ATGATTGAAATTTGACCAAG+AGG | + | chr3_3:62239156-62239175 | Msa0462990:intron | 30.0% | |
| !! | CAATATTATTCTGAAACTGC+AGG | + | chr3_3:62239226-62239245 | Msa0462990:intron | 30.0% |
| ATGATAAATTAGGGAGGATA+GGG | - | chr3_3:62239360-62239379 | None:intergenic | 30.0% | |
| TATGATAAATTAGGGAGGAT+AGG | - | chr3_3:62239361-62239380 | None:intergenic | 30.0% | |
| CAACTTATGATAAATTAGGG+AGG | - | chr3_3:62239366-62239385 | None:intergenic | 30.0% | |
| CTCCCTAATTTATCATAAGT+TGG | + | chr3_3:62239364-62239383 | Msa0462990:intron | 30.0% | |
| AAAAGTCACATCTTTAAGCA+AGG | - | chr3_3:62239441-62239460 | None:intergenic | 30.0% | |
| CTAAATTAACATACTACACC+GGG | - | chr3_3:62239477-62239496 | None:intergenic | 30.0% | |
| ! | TTATTTCACCAAAGCTGTTT+TGG | + | chr3_3:62239611-62239630 | Msa0462990:intron | 30.0% |
| CATCTACAGGTTCTTTAAAT+TGG | - | chr3_3:62239767-62239786 | None:intergenic | 30.0% | |
| !! | CAATTCTAGTTTCACTATTG+AGG | + | chr3_3:62239853-62239872 | Msa0462990:intron | 30.0% |
| ! | ATTGAAAGGTGTACGTATTA+CGG | - | chr3_3:62240047-62240066 | None:intergenic | 30.0% |
| CATACAAATAAAAAGGACCA+TGG | - | chr3_3:62240088-62240107 | None:intergenic | 30.0% | |
| !!! | TATTTCACATAACGGACTTT+TGG | + | chr3_3:62240171-62240190 | Msa0462990:intron | 30.0% |
| ACAAAAGCAAAATCAATGAG+AGG | - | chr3_3:62240984-62241003 | None:intergenic | 30.0% | |
| TTACTTAGAGAAGCAAGATT+AGG | + | chr3_3:62241082-62241101 | Msa0462990:CDS | 30.0% | |
| ! | AGTTTGAAGCACATATCAAA+TGG | - | chr3_3:62241227-62241246 | None:intergenic | 30.0% |
| AGAATAATTCCCAACTTCAA+AGG | - | chr3_3:62241275-62241294 | None:intergenic | 30.0% | |
| AACCAAATAAAAGTTCCTGA+TGG | + | chr3_3:62241416-62241435 | Msa0462990:three_prime_UTR | 30.0% | |
| ! | TTCCATCAGGAACTTTTATT+TGG | - | chr3_3:62241421-62241440 | None:intergenic | 30.0% |
| ! | AAGAAGTAAGTTTTTCCATC+AGG | - | chr3_3:62241434-62241453 | None:intergenic | 30.0% |
| AAACAGTAGCGAGATCAAAT+CGG | + | chr3_3:62236993-62237012 | Msa0462990:five_prime_UTR | 35.0% | |
| CTCGATAAACCTCTTAACAA+GGG | + | chr3_3:62237106-62237125 | Msa0462990:CDS | 35.0% | |
| ! | GATCTATAGTATTGAAGGAG+CGG | - | chr3_3:62237184-62237203 | None:intergenic | 35.0% |
| CCATTGAAGTTGAAGAGAAT+TGG | - | chr3_3:62237246-62237265 | None:intergenic | 35.0% | |
| CCAATTCTCTTCAACTTCAA+TGG | + | chr3_3:62237243-62237262 | Msa0462990:intron | 35.0% | |
| ! | ATGTTTGGTTGCACTTTTAC+AGG | + | chr3_3:62237299-62237318 | Msa0462990:intron | 35.0% |
| CTTGGAAACATGAAAACGAA+TGG | - | chr3_3:62237561-62237580 | None:intergenic | 35.0% | |
| ! | CATTCGTTTTCATGTTTCCA+AGG | + | chr3_3:62237559-62237578 | Msa0462990:intron | 35.0% |
| ! | CAGACAAATCAAATTAGCCT+TGG | - | chr3_3:62237579-62237598 | None:intergenic | 35.0% |
| !! | CTAATTTGATTTGTCTGTGC+AGG | + | chr3_3:62237582-62237601 | Msa0462990:intron | 35.0% |
| CAATATTGTCAACCTGTGTT+TGG | - | chr3_3:62237657-62237676 | None:intergenic | 35.0% | |
| ! | CAAACACAGGTTGACAATAT+TGG | + | chr3_3:62237655-62237674 | Msa0462990:CDS | 35.0% |
| ATACAAGCGATGAACAAGAT+TGG | - | chr3_3:62237701-62237720 | None:intergenic | 35.0% | |
| AACATGTAAACTGTCCAGAT+TGG | + | chr3_3:62237962-62237981 | Msa0462990:intron | 35.0% | |
| TGACAACACTACTGTGAATT+GGG | - | chr3_3:62238238-62238257 | None:intergenic | 35.0% | |
| TTGACAACACTACTGTGAAT+TGG | - | chr3_3:62238239-62238258 | None:intergenic | 35.0% | |
| ATTCACAGTAGTGTTGTCAA+TGG | + | chr3_3:62238239-62238258 | Msa0462990:intron | 35.0% | |
| TTCACAGTAGTGTTGTCAAT+GGG | + | chr3_3:62238240-62238259 | Msa0462990:intron | 35.0% | |
| AGAATGGAATCACACTGTTT+AGG | + | chr3_3:62238291-62238310 | Msa0462990:intron | 35.0% | |
| !! | ATTCTTGATGATGGAATCCA+TGG | - | chr3_3:62238413-62238432 | None:intergenic | 35.0% |
| TGGGATAGAATTCTTGATGA+TGG | - | chr3_3:62238422-62238441 | None:intergenic | 35.0% | |
| TGACACATTACTAATTTCCC+TGG | + | chr3_3:62238470-62238489 | Msa0462990:intron | 35.0% | |
| CCCTGGTATATTACTACATT+AGG | + | chr3_3:62238487-62238506 | Msa0462990:intron | 35.0% | |
| CAACATGATAGATCCTTCAA+AGG | - | chr3_3:62238531-62238550 | None:intergenic | 35.0% | |
| GAAGGATCTATCATGTTGAA+TGG | + | chr3_3:62238533-62238552 | Msa0462990:intron | 35.0% | |
| GTAGAAATGAAAAGGGCAAA+AGG | + | chr3_3:62238870-62238889 | Msa0462990:intron | 35.0% | |
| !! | TCTTCCTTCTCTAAAATGAG+AGG | + | chr3_3:62239067-62239086 | Msa0462990:intron | 35.0% |
| TTGAAATTTGACCAAGAGGA+TGG | + | chr3_3:62239160-62239179 | Msa0462990:intron | 35.0% | |
| !!! | TATGTATGGTTTTTTGCACG+AGG | + | chr3_3:62239185-62239204 | Msa0462990:intron | 35.0% |
| !! | ACAGTGTGGAAAGTACTATT+TGG | + | chr3_3:62239299-62239318 | Msa0462990:CDS | 35.0% |
| !! | GTGGAAAGTACTATTTGGAA+AGG | + | chr3_3:62239304-62239323 | Msa0462990:CDS | 35.0% |
| TATTTCATGCCACTGAGTAA+TGG | - | chr3_3:62239417-62239436 | None:intergenic | 35.0% | |
| ! | GTCATATGTTTGAAACATGC+AGG | + | chr3_3:62239565-62239584 | Msa0462990:intron | 35.0% |
| ATGAACAACCAAAACAGCTT+TGG | - | chr3_3:62239622-62239641 | None:intergenic | 35.0% | |
| !! | TTGGCTTTATAAGTCATGTG+TGG | + | chr3_3:62239661-62239680 | Msa0462990:intron | 35.0% |
| !! | TGGCTTTATAAGTCATGTGT+GGG | + | chr3_3:62239662-62239681 | Msa0462990:intron | 35.0% |
| ! | GTCAACTTGTTTGATCATTG+AGG | + | chr3_3:62239695-62239714 | Msa0462990:intron | 35.0% |
| AACAGTTCTTCTCATACCAA+GGG | - | chr3_3:62239736-62239755 | None:intergenic | 35.0% | |
| AAACAGTTCTTCTCATACCA+AGG | - | chr3_3:62239737-62239756 | None:intergenic | 35.0% | |
| TTTCACTATTGAGGGAATAG+CGG | + | chr3_3:62239862-62239881 | Msa0462990:intron | 35.0% | |
| GTACGTATTACGGTGAATAT+AGG | - | chr3_3:62240037-62240056 | None:intergenic | 35.0% | |
| ACAAATAAAAAGGACCATGG+AGG | - | chr3_3:62240085-62240104 | None:intergenic | 35.0% | |
| !! | CTGTCTGCTATTTCACATAA+CGG | + | chr3_3:62240163-62240182 | Msa0462990:intron | 35.0% |
| GCTCAACAGAAATGGAATAT+AGG | - | chr3_3:62240280-62240299 | None:intergenic | 35.0% | |
| ATATTCCATTTCTGTTGAGC+TGG | + | chr3_3:62240280-62240299 | Msa0462990:intron | 35.0% | |
| ! | TTTTGGTCAACTTCAAGATC+TGG | + | chr3_3:62240438-62240457 | Msa0462990:intron | 35.0% |
| TAGATTCATTTCTATCCCCA+AGG | + | chr3_3:62240706-62240725 | Msa0462990:intron | 35.0% | |
| ! | CATTTGTTGCTGGAATAGTT+CGG | + | chr3_3:62240753-62240772 | Msa0462990:CDS | 35.0% |
| ! | ATTTGTTGCTGGAATAGTTC+GGG | + | chr3_3:62240754-62240773 | Msa0462990:CDS | 35.0% |
| !! | TTCTATTGAACAGGGTGTTT+TGG | + | chr3_3:62240855-62240874 | Msa0462990:intron | 35.0% |
| TTTATCAAAATTGTGGTCCG+AGG | - | chr3_3:62240943-62240962 | None:intergenic | 35.0% | |
| !! | TTTTGCTTTTGTTCAGTGCA+CGG | + | chr3_3:62240992-62241011 | Msa0462990:intron | 35.0% |
| ! | AAAACACTTTTCACACGCAT+AGG | - | chr3_3:62241185-62241204 | None:intergenic | 35.0% |
| !!! | ATGCGTGTGAAAAGTGTTTT+AGG | + | chr3_3:62241185-62241204 | Msa0462990:three_prime_UTR | 35.0% |
| GAAGCACATATCAAATGGAT+AGG | - | chr3_3:62241222-62241241 | None:intergenic | 35.0% | |
| !! | TGTACGTTATCCTTTGAAGT+TGG | + | chr3_3:62241262-62241281 | Msa0462990:three_prime_UTR | 35.0% |
| !! | GTACGTTATCCTTTGAAGTT+GGG | + | chr3_3:62241263-62241282 | Msa0462990:three_prime_UTR | 35.0% |
| ! | GTTATCCTGCATATTGATTG+AGG | + | chr3_3:62241352-62241371 | Msa0462990:three_prime_UTR | 35.0% |
| GTTATCCTCAATCAATATGC+AGG | - | chr3_3:62241360-62241379 | None:intergenic | 35.0% | |
| AACAGTAGCGAGATCAAATC+GGG | + | chr3_3:62236994-62237013 | Msa0462990:five_prime_UTR | 40.0% | |
| AGGAAGAGGAAGAAGATGAT+CGG | + | chr3_3:62237052-62237071 | Msa0462990:exon | 40.0% | |
| GTAGGAAAGGTAAAGCAGTA+CGG | + | chr3_3:62237076-62237095 | Msa0462990:CDS | 40.0% | |
| CCTTGTTAAGAGGTTTATCG+AGG | - | chr3_3:62237108-62237127 | None:intergenic | 40.0% | |
| CCTCGATAAACCTCTTAACA+AGG | + | chr3_3:62237105-62237124 | Msa0462990:CDS | 40.0% | |
| ! | ATGTACGTTTGGTTTCGCAA+TGG | - | chr3_3:62237513-62237532 | None:intergenic | 40.0% |
| TTGGTTGTACTGAACAAGCT+CGG | - | chr3_3:62237638-62237657 | None:intergenic | 40.0% | |
| TGTTCAGTACAACCAAACAC+AGG | + | chr3_3:62237642-62237661 | Msa0462990:CDS | 40.0% | |
| !! | TGATTTGTTTCCCTTGACAC+AGG | + | chr3_3:62237827-62237846 | Msa0462990:intron | 40.0% |
| ATGTAAACTGTCCAGATTGG+AGG | + | chr3_3:62237965-62237984 | Msa0462990:intron | 40.0% | |
| AGCAACATACCTTATCTCTG+TGG | - | chr3_3:62238034-62238053 | None:intergenic | 40.0% | |
| !! | TTATACAATTCTGGAACCCG+AGG | + | chr3_3:62238119-62238138 | Msa0462990:intron | 40.0% |
| !! | AGGAGATAGTGGACTATATG+CGG | + | chr3_3:62238144-62238163 | Msa0462990:intron | 40.0% |
| GACTATATGCGGTGATTAGT+TGG | + | chr3_3:62238155-62238174 | Msa0462990:intron | 40.0% | |
| TGGGACTAAAGCAGAGAAAT+AGG | - | chr3_3:62238219-62238238 | None:intergenic | 40.0% | |
| TTATTATGACGGTCCCTCAT+TGG | + | chr3_3:62238383-62238402 | Msa0462990:intron | 40.0% | |
| AATCCATGGACAACCAATGA+GGG | - | chr3_3:62238399-62238418 | None:intergenic | 40.0% | |
| TGTTGAATGGTCTAGTCAGT+TGG | + | chr3_3:62238546-62238565 | Msa0462990:intron | 40.0% | |
| CGCAGATTGAGATGTTAAGT+GGG | - | chr3_3:62238603-62238622 | None:intergenic | 40.0% | |
| TCGCAGATTGAGATGTTAAG+TGG | - | chr3_3:62238604-62238623 | None:intergenic | 40.0% | |
| AAAGGGCAAAAGGTAACAGA+TGG | + | chr3_3:62238880-62238899 | Msa0462990:intron | 40.0% | |
| AAGGGCAAAAGGTAACAGAT+GGG | + | chr3_3:62238881-62238900 | Msa0462990:intron | 40.0% | |
| AAGAAATGAAGCCAAGATGG+TGG | - | chr3_3:62239051-62239070 | None:intergenic | 40.0% | |
| AGGAAGAAATGAAGCCAAGA+TGG | - | chr3_3:62239054-62239073 | None:intergenic | 40.0% | |
| !! | GGATCCTCTCATTTTAGAGA+AGG | - | chr3_3:62239074-62239093 | None:intergenic | 40.0% |
| CCATACATATTCCATCCTCT+TGG | - | chr3_3:62239174-62239193 | None:intergenic | 40.0% | |
| CCAAGAGGATGGAATATGTA+TGG | + | chr3_3:62239171-62239190 | Msa0462990:intron | 40.0% | |
| CGAGGTTATCGTGATTAATG+TGG | + | chr3_3:62239203-62239222 | Msa0462990:intron | 40.0% | |
| ! | CTTTTGTACACAGTACAGTG+TGG | + | chr3_3:62239285-62239304 | Msa0462990:CDS | 40.0% |
| TGTGTTACACCATTACTCAG+TGG | + | chr3_3:62239405-62239424 | Msa0462990:intron | 40.0% | |
| ! | CTTTTGACCCTTTTACATCC+CGG | + | chr3_3:62239456-62239475 | Msa0462990:intron | 40.0% |
| TACTACACCGGGATGTAAAA+GGG | - | chr3_3:62239466-62239485 | None:intergenic | 40.0% | |
| ATACTACACCGGGATGTAAA+AGG | - | chr3_3:62239467-62239486 | None:intergenic | 40.0% | |
| ! | CTGCCATTGTTGTTAAGTAG+TGG | + | chr3_3:62239806-62239825 | Msa0462990:intron | 40.0% |
| GTGAAACTAGAATTGTGCAG+CGG | - | chr3_3:62239848-62239867 | None:intergenic | 40.0% | |
| ! | GCTGATTTAGCAACAATAGC+AGG | + | chr3_3:62239906-62239925 | Msa0462990:intron | 40.0% |
| TAAGTTATACTCTGCCTCCA+TGG | + | chr3_3:62240068-62240087 | Msa0462990:intron | 40.0% | |
| ! | CTTACACTTAGATTGGTCAC+AGG | + | chr3_3:62240254-62240273 | Msa0462990:intron | 40.0% |
| ! | AAGAAATCTCAAAAGGCACG+AGG | - | chr3_3:62240413-62240432 | None:intergenic | 40.0% |
| TCAACTTCAAGATCTGGTGT+TGG | + | chr3_3:62240444-62240463 | Msa0462990:intron | 40.0% | |
| ! | ATATTAGGTAGCTGACTCAC+TGG | + | chr3_3:62240535-62240554 | Msa0462990:intron | 40.0% |
| ATTTCTATCCCCAAGGACAT+GGG | + | chr3_3:62240713-62240732 | Msa0462990:CDS | 40.0% | |
| TTAAACGTTCCCATGTCCTT+GGG | - | chr3_3:62240725-62240744 | None:intergenic | 40.0% | |
| !! | ATTGAACAGGGTGTTTTGGA+TGG | + | chr3_3:62240859-62240878 | Msa0462990:intron | 40.0% |
| AAATGAGCTGTTACAACAGC+TGG | - | chr3_3:62240895-62240914 | None:intergenic | 40.0% | |
| !!! | TGTTTTTTGCGCTATCTTCC+AGG | + | chr3_3:62241057-62241076 | Msa0462990:intron | 40.0% |
| TTGCTTCTCTAAGTAACACC+TGG | - | chr3_3:62241078-62241097 | None:intergenic | 40.0% | |
| CACATATCAAATGGATAGGC+TGG | - | chr3_3:62241218-62241237 | None:intergenic | 40.0% | |
| GAGATCAAATCGGGTTAACC+AGG | + | chr3_3:62237003-62237022 | Msa0462990:five_prime_UTR | 45.0% | |
| ! | GTGTTTAGTGGGTGAGTTAG+AGG | + | chr3_3:62237032-62237051 | Msa0462990:five_prime_UTR | 45.0% |
| AGGAAGAAGATGATCGGAGT+AGG | + | chr3_3:62237058-62237077 | Msa0462990:exon | 45.0% | |
| GAAGATGATCGGAGTAGGAA+AGG | + | chr3_3:62237063-62237082 | Msa0462990:exon | 45.0% | |
| GCAGATCAAGGAAGATACCT+CGG | - | chr3_3:62237137-62237156 | None:intergenic | 45.0% | |
| !! | TGTTTGCTGTCCTGTGTCAA+GGG | - | chr3_3:62237840-62237859 | None:intergenic | 45.0% |
| !! | TTGTTTGCTGTCCTGTGTCA+AGG | - | chr3_3:62237841-62237860 | None:intergenic | 45.0% |
| ATATCCAGCATCCTCCAATC+TGG | - | chr3_3:62237979-62237998 | None:intergenic | 45.0% | |
| AGGATGCTGGATATGCTGTT+GGG | + | chr3_3:62237985-62238004 | Msa0462990:CDS | 45.0% | |
| ! | GGGAAGACTTTGAGAGTCAT+AGG | - | chr3_3:62238324-62238343 | None:intergenic | 45.0% |
| GAATCCATGGACAACCAATG+AGG | - | chr3_3:62238400-62238419 | None:intergenic | 45.0% | |
| AAGAATTCTATCCCACCCCA+CGG | + | chr3_3:62238427-62238446 | Msa0462990:intron | 45.0% | |
| AAATTGGCACAAGAAGCCGT+GGG | - | chr3_3:62238446-62238465 | None:intergenic | 45.0% | |
| TCAATCTGCGAGCCTTTCAT+TGG | + | chr3_3:62238613-62238632 | Msa0462990:intron | 45.0% | |
| AGGATCCATGCACATCCATT+GGG | + | chr3_3:62239087-62239106 | Msa0462990:intron | 45.0% | |
| CGATCAACTAACAGACCCAA+TGG | - | chr3_3:62239105-62239124 | None:intergenic | 45.0% | |
| TGAAACTGCAGGGAAACAGA+AGG | + | chr3_3:62239237-62239256 | Msa0462990:intron | 45.0% | |
| GAAACTGCAGGGAAACAGAA+GGG | + | chr3_3:62239238-62239257 | Msa0462990:intron | 45.0% | |
| AGAAGGGAGACACGATTGTT+GGG | + | chr3_3:62239254-62239273 | Msa0462990:CDS | 45.0% | |
| GTTCAACTTGATATCGCCCT+TGG | + | chr3_3:62239717-62239736 | Msa0462990:intron | 45.0% | |
| GCGCCACTACTTAACAACAA+TGG | - | chr3_3:62239812-62239831 | None:intergenic | 45.0% | |
| ACAGCGTTGCAGACAAATAG+CGG | - | chr3_3:62240147-62240166 | None:intergenic | 45.0% | |
| CATGACCAGCTCAACAGAAA+TGG | - | chr3_3:62240288-62240307 | None:intergenic | 45.0% | |
| ATCAATCAGCAGTGAGCTGA+TGG | + | chr3_3:62240670-62240689 | Msa0462990:intron | 45.0% | |
| CATTTCTATCCCCAAGGACA+TGG | + | chr3_3:62240712-62240731 | Msa0462990:CDS | 45.0% | |
| TAAACGTTCCCATGTCCTTG+GGG | - | chr3_3:62240724-62240743 | None:intergenic | 45.0% | |
| GTTAAACGTTCCCATGTCCT+TGG | - | chr3_3:62240726-62240745 | None:intergenic | 45.0% | |
| GACATGGGAACGTTTAACTG+TGG | + | chr3_3:62240728-62240747 | Msa0462990:CDS | 45.0% | |
| ! | AACAGCTCATTTTGTGCCCA+TGG | + | chr3_3:62240903-62240922 | Msa0462990:CDS | 45.0% |
| AATCGGGTTAACCAGGACTG+AGG | + | chr3_3:62237010-62237029 | Msa0462990:five_prime_UTR | 50.0% | |
| ! | ACCAGGACTGAGGTGTTTAG+TGG | + | chr3_3:62237020-62237039 | Msa0462990:five_prime_UTR | 50.0% |
| ! | CCAGGACTGAGGTGTTTAGT+GGG | + | chr3_3:62237021-62237040 | Msa0462990:five_prime_UTR | 50.0% |
| AGTGGGTGAGTTAGAGGAAG+AGG | + | chr3_3:62237038-62237057 | Msa0462990:five_prime_UTR | 50.0% | |
| TCGGTCTTGCCCTTGTTAAG+AGG | - | chr3_3:62237118-62237137 | None:intergenic | 50.0% | |
| TCTTAACAAGGGCAAGACCG+AGG | + | chr3_3:62237117-62237136 | Msa0462990:CDS | 50.0% | |
| GCATTTGAGGGAGCAGATCA+AGG | - | chr3_3:62237149-62237168 | None:intergenic | 50.0% | |
| ATATTGGCGAGCTCGAACGA+AGG | + | chr3_3:62237671-62237690 | Msa0462990:CDS | 50.0% | |
| GAGGATGCTGGATATGCTGT+TGG | + | chr3_3:62237984-62238003 | Msa0462990:CDS | 50.0% | |
| GGATGCTGGATATGCTGTTG+GGG | + | chr3_3:62237986-62238005 | Msa0462990:CDS | 50.0% | |
| ! | GCTGCTTTGCCACAGAGATA+AGG | + | chr3_3:62238022-62238041 | Msa0462990:CDS | 50.0% |
| AATTGGCACAAGAAGCCGTG+GGG | - | chr3_3:62238445-62238464 | None:intergenic | 50.0% | |
| GAAATTGGCACAAGAAGCCG+TGG | - | chr3_3:62238447-62238466 | None:intergenic | 50.0% | |
| CTTCAAAGGGAAGCAACTGC+TGG | - | chr3_3:62238517-62238536 | None:intergenic | 50.0% | |
| CAGCAGTTGCTTCCCTTTGA+AGG | + | chr3_3:62238515-62238534 | Msa0462990:intron | 50.0% | |
| GAGTCCAGGACTCCAATGAA+AGG | - | chr3_3:62238628-62238647 | None:intergenic | 50.0% | |
| GAGGATCCATGCACATCCAT+TGG | + | chr3_3:62239086-62239105 | Msa0462990:intron | 50.0% | |
| ACAGACCCAATGGATGTGCA+TGG | - | chr3_3:62239095-62239114 | None:intergenic | 50.0% | |
| CAGAAGGGAGACACGATTGT+TGG | + | chr3_3:62239253-62239272 | Msa0462990:CDS | 50.0% | |
| ! | GTAGCTGACTCACTGGAGAA+AGG | + | chr3_3:62240542-62240561 | Msa0462990:CDS | 50.0% |
| ! | AACTGTGGCGCATTTGTTGC+TGG | + | chr3_3:62240743-62240762 | Msa0462990:CDS | 50.0% |
| ! | GCTCATTTTGTGCCCATGGA+AGG | + | chr3_3:62240907-62240926 | Msa0462990:CDS | 50.0% |
| GGTCGTTGTTGACCTTCCAT+GGG | - | chr3_3:62240922-62240941 | None:intergenic | 50.0% | |
| AGGTCGTTGTTGACCTTCCA+TGG | - | chr3_3:62240923-62240942 | None:intergenic | 50.0% | |
| TGGAAGGTCAACAACGACCT+CGG | + | chr3_3:62240923-62240942 | Msa0462990:CDS | 50.0% | |
| CCCACTAAACACCTCAGTCC+TGG | - | chr3_3:62237024-62237043 | None:intergenic | 55.0% | |
| CTGTCCAGATTGGAGGATGC+TGG | + | chr3_3:62237972-62237991 | Msa0462990:intron | 55.0% | |
| AGTCCACTATCTCCTCGCCT+CGG | - | chr3_3:62238139-62238158 | None:intergenic | 55.0% | |
| ! | GGTCCCTCATTGGTTGTCCA+TGG | + | chr3_3:62238393-62238412 | Msa0462990:intron | 55.0% |
| CGAGCCTTTCATTGGAGTCC+TGG | + | chr3_3:62238621-62238640 | Msa0462990:intron | 55.0% | |
| !! | CAGGGTGTTTTGGATGGTGC+TGG | + | chr3_3:62240865-62240884 | Msa0462990:intron | 55.0% |
| !! | CAATTCTGGAACCCGAGGCG+AGG | + | chr3_3:62238124-62238143 | Msa0462990:intron | 60.0% |
| AACCCGAGGCGAGGAGATAG+TGG | + | chr3_3:62238133-62238152 | Msa0462990:intron | 60.0% | |
| GTCCACTATCTCCTCGCCTC+GGG | - | chr3_3:62238138-62238157 | None:intergenic | 60.0% | |
| GGCACAAGAAGCCGTGGGGT+GGG | - | chr3_3:62238441-62238460 | None:intergenic | 65.0% | |
| TGGCACAAGAAGCCGTGGGG+TGG | - | chr3_3:62238442-62238461 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62236903 | 62241458 | 62236903 | ID=Msa0462990;Name=Msa0462990 |
| chr3_3 | mRNA | 62236903 | 62241458 | 62236903 | ID=Msa0462990-mRNA-1;Parent=Msa0462990;Name=Msa0462990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=164|1|1|1|1|1|8|350|194 |
| chr3_3 | exon | 62236903 | 62237138 | 62236903 | ID=Msa0462990-mRNA-1:exon:13266;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62237604 | 62237692 | 62237604 | ID=Msa0462990-mRNA-1:exon:13267;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62237980 | 62238043 | 62237980 | ID=Msa0462990-mRNA-1:exon:13268;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62239248 | 62239325 | 62239248 | ID=Msa0462990-mRNA-1:exon:13269;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62240542 | 62240618 | 62240542 | ID=Msa0462990-mRNA-1:exon:13270;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62240709 | 62240775 | 62240709 | ID=Msa0462990-mRNA-1:exon:13271;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62240868 | 62240975 | 62240868 | ID=Msa0462990-mRNA-1:exon:13272;Parent=Msa0462990-mRNA-1 |
| chr3_3 | exon | 62241079 | 62241458 | 62241079 | ID=Msa0462990-mRNA-1:exon:13273;Parent=Msa0462990-mRNA-1 |
| chr3_3 | five_prime_UTR | 62236903 | 62237066 | 62236903 | ID=Msa0462990-mRNA-1:five_prime_utr;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62237067 | 62237138 | 62237067 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62237604 | 62237692 | 62237604 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62237980 | 62238043 | 62237980 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62239248 | 62239325 | 62239248 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62240542 | 62240618 | 62240542 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62240709 | 62240775 | 62240709 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62240868 | 62240975 | 62240868 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | CDS | 62241079 | 62241108 | 62241079 | ID=Msa0462990-mRNA-1:cds;Parent=Msa0462990-mRNA-1 |
| chr3_3 | three_prime_UTR | 62241109 | 62241458 | 62241109 | ID=Msa0462990-mRNA-1:three_prime_utr;Parent=Msa0462990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
