Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679700 | AES87141.1 | 61.765 | 136 | 50 | 1 | 98 | 233 | 1 | 134 | 2.22e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679700 | sp|Q9XGX8|TIM9_MESCR | 68.056 | 72 | 23 | 0 | 1 | 72 | 1 | 72 | 4.93e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679700 | G7JUG7 | 61.765 | 136 | 50 | 1 | 98 | 233 | 1 | 134 | 1.06e-51 | 177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0679700 | 0.815666 | 8.223018e-52 | -8.615850e-47 |
| Msa0011960 | Msa0679700 | 0.808679 | 2.750816e-50 | -8.615850e-47 |
| Msa0027260 | Msa0679700 | 0.804333 | 2.271649e-49 | -8.615850e-47 |
| Msa0032090 | Msa0679700 | 0.808547 | 2.935395e-50 | -8.615850e-47 |
| Msa0032580 | Msa0679700 | 0.823310 | 1.483654e-53 | -8.615850e-47 |
| Msa0040690 | Msa0679700 | 0.830507 | 2.824604e-55 | -8.615850e-47 |
| Msa0041720 | Msa0679700 | 0.815508 | 8.920729e-52 | -8.615850e-47 |
| Msa0043660 | Msa0679700 | 0.810622 | 1.051586e-50 | -8.615850e-47 |
| Msa0046760 | Msa0679700 | 0.810274 | 1.250357e-50 | -8.615850e-47 |
| Msa0047160 | Msa0679700 | 0.808574 | 2.896891e-50 | -8.615850e-47 |
| Msa0048180 | Msa0679700 | 0.817668 | 2.927088e-52 | -8.615850e-47 |
| Msa0052610 | Msa0679700 | 0.806211 | 9.185833e-50 | -8.615850e-47 |
| Msa0054440 | Msa0679700 | 0.805319 | 1.413544e-49 | -8.615850e-47 |
| Msa0057710 | Msa0679700 | 0.804507 | 2.089698e-49 | -8.615850e-47 |
| Msa0074320 | Msa0679700 | 0.810495 | 1.120324e-50 | -8.615850e-47 |
| Msa0090520 | Msa0679700 | 0.807297 | 5.415380e-50 | -8.615850e-47 |
| Msa0094470 | Msa0679700 | 0.800797 | 1.217725e-48 | -8.615850e-47 |
| Msa0097850 | Msa0679700 | 0.810823 | 9.514748e-51 | -8.615850e-47 |
| Msa0105620 | Msa0679700 | 0.801381 | 9.250941e-49 | -8.615850e-47 |
| Msa0118710 | Msa0679700 | 0.823428 | 1.392632e-53 | -8.615850e-47 |
| Msa0615440 | Msa0679700 | 0.851221 | 1.022384e-60 | -8.615850e-47 |
| Msa0620620 | Msa0679700 | 0.806222 | 9.133056e-50 | -8.615850e-47 |
| Msa0666230 | Msa0679700 | 0.803686 | 3.096366e-49 | -8.615850e-47 |
| Msa0679700 | Msa0685140 | 0.804712 | 1.894118e-49 | -8.615850e-47 |
| Msa0679700 | Msa0698490 | 0.851219 | 1.023262e-60 | -8.615850e-47 |
| Msa0679700 | Msa0698660 | 0.847587 | 1.052197e-59 | -8.615850e-47 |
| Msa0679700 | Msa0698800 | 0.820683 | 6.025532e-53 | -8.615850e-47 |
| Msa0679700 | Msa0719420 | 0.812980 | 3.225478e-51 | -8.615850e-47 |
| Msa0679700 | Msa0789680 | 0.815254 | 1.015788e-51 | -8.615850e-47 |
| Msa0679700 | Msa0790610 | 0.809606 | 1.741167e-50 | -8.615850e-47 |
| Msa0679700 | Msa0802410 | 0.827042 | 1.945767e-54 | -8.615850e-47 |
| Msa0679700 | Msa0826760 | 0.814597 | 1.420925e-51 | -8.615850e-47 |
| Msa0679700 | Msa0830540 | 0.802716 | 4.916781e-49 | -8.615850e-47 |
| Msa0679700 | Msa0879080 | 0.804437 | 2.161116e-49 | -8.615850e-47 |
| Msa0679700 | Msa0902760 | 0.800734 | 1.254233e-48 | -8.615850e-47 |
| Msa0679700 | Msa0947530 | -0.817879 | 2.622787e-52 | -8.615850e-47 |
| Msa0679700 | Msa0970420 | 0.802133 | 6.481998e-49 | -8.615850e-47 |
| Msa0679700 | Msa1006840 | 0.831625 | 1.500979e-55 | -8.615850e-47 |
| Msa0679700 | Msa1013400 | 0.800172 | 1.632907e-48 | -8.615850e-47 |
| Msa0679700 | Msa1019240 | 0.805447 | 1.328828e-49 | -8.615850e-47 |
| Msa0679700 | Msa1019640 | 0.800435 | 1.443497e-48 | -8.615850e-47 |
| Msa0679700 | Msa1040840 | 0.807116 | 5.913959e-50 | -8.615850e-47 |
| Msa0679700 | Msa1064250 | 0.810610 | 1.058356e-50 | -8.615850e-47 |
| Msa0679700 | Msa1066490 | 0.805462 | 1.319800e-49 | -8.615850e-47 |
| Msa0679700 | Msa1079230 | 0.803528 | 3.339936e-49 | -8.615850e-47 |
| Msa0679700 | Msa1080640 | 0.802020 | 6.838941e-49 | -8.615850e-47 |
| Msa0679700 | Msa1080800 | 0.814174 | 1.761847e-51 | -8.615850e-47 |
| Msa0679700 | Msa1087710 | 0.802228 | 6.198563e-49 | -8.615850e-47 |
| Msa0679700 | Msa1104140 | 0.820117 | 8.126390e-53 | -8.615850e-47 |
| Msa0679700 | Msa1104210 | 0.803318 | 3.691622e-49 | -8.615850e-47 |
| Msa0679700 | Msa1104370 | 0.800467 | 1.421896e-48 | -8.615850e-47 |
| Msa0679700 | Msa1106700 | 0.800095 | 1.692423e-48 | -8.615850e-47 |
| Msa0679700 | Msa1118940 | 0.802301 | 5.985994e-49 | -8.615850e-47 |
| Msa0679700 | Msa1135890 | 0.837194 | 6.001207e-57 | -8.615850e-47 |
| Msa0679700 | Msa1166870 | 0.806190 | 9.275837e-50 | -8.615850e-47 |
| Msa0679700 | Msa1169040 | 0.803844 | 2.871631e-49 | -8.615850e-47 |
| Msa0679700 | Msa1206850 | 0.804089 | 2.553789e-49 | -8.615850e-47 |
| Msa0679700 | Msa1208880 | 0.802569 | 5.271525e-49 | -8.615850e-47 |
| Msa0679700 | Msa1208890 | -0.825601 | 4.288573e-54 | -8.615850e-47 |
| Msa0679700 | Msa1218450 | 0.817073 | 3.984425e-52 | -8.615850e-47 |
| Msa0679700 | Msa1245940 | -0.819219 | 1.302837e-52 | -8.615850e-47 |
| Msa0679700 | Msa1259070 | -0.821883 | 3.185568e-53 | -8.615850e-47 |
| Msa0679700 | Msa1262890 | 0.806196 | 9.250748e-50 | -8.615850e-47 |
| Msa0679700 | Msa1265630 | 0.807881 | 4.070285e-50 | -8.615850e-47 |
| Msa0679700 | Msa1344340 | 0.801838 | 7.454546e-49 | -8.615850e-47 |
| Msa0679700 | Msa1355700 | 0.800142 | 1.655364e-48 | -8.615850e-47 |
| Msa0679700 | Msa1363330 | 0.849586 | 2.940305e-60 | -8.615850e-47 |
| Msa0679700 | Msa1370620 | 0.805657 | 1.200687e-49 | -8.615850e-47 |
| Msa0679700 | Msa1379760 | 0.808921 | 2.442035e-50 | -8.615850e-47 |
| Msa0679700 | Msa1382560 | 0.808690 | 2.736649e-50 | -8.615850e-47 |
| Msa0679700 | Msa1385100 | 0.806595 | 7.621295e-50 | -8.615850e-47 |
| Msa0679700 | Msa1386600 | 0.851155 | 1.067209e-60 | -8.615850e-47 |
| Msa0679700 | Msa1386710 | 0.801913 | 7.195623e-49 | -8.615850e-47 |
| Msa0679700 | Msa1394290 | 0.811732 | 6.041999e-51 | -8.615850e-47 |
| Msa0679700 | Msa1400610 | -0.827378 | 1.617033e-54 | -8.615850e-47 |
| Msa0679700 | Msa1423350 | 0.846545 | 2.030929e-59 | -8.615850e-47 |
| Msa0679700 | Msa1432700 | 0.803311 | 3.703044e-49 | -8.615850e-47 |
| Msa0679700 | Msa1440310 | 0.808990 | 2.360800e-50 | -8.615850e-47 |
| Msa0679700 | Msa1444310 | 0.804133 | 2.500350e-49 | -8.615850e-47 |
| Msa0679700 | Msa1457920 | 0.820565 | 6.414691e-53 | -8.615850e-47 |
| Msa0128860 | Msa0679700 | 0.807469 | 4.978712e-50 | -8.615850e-47 |
| Msa0131330 | Msa0679700 | 0.801931 | 7.132974e-49 | -8.615850e-47 |
| Msa0136070 | Msa0679700 | 0.810545 | 1.093023e-50 | -8.615850e-47 |
| Msa0136100 | Msa0679700 | 0.811355 | 7.295900e-51 | -8.615850e-47 |
| Msa0137990 | Msa0679700 | 0.807414 | 5.113488e-50 | -8.615850e-47 |
| Msa0167480 | Msa0679700 | 0.800664 | 1.296073e-48 | -8.615850e-47 |
| Msa0172970 | Msa0679700 | 0.828060 | 1.108829e-54 | -8.615850e-47 |
| Msa0174730 | Msa0679700 | 0.808908 | 2.457971e-50 | -8.615850e-47 |
| Msa0177700 | Msa0679700 | -0.806459 | 8.143466e-50 | -8.615850e-47 |
| Msa0187690 | Msa0679700 | 0.801600 | 8.342779e-49 | -8.615850e-47 |
| Msa0187930 | Msa0679700 | 0.815032 | 1.137821e-51 | -8.615850e-47 |
| Msa0188350 | Msa0679700 | 0.815705 | 8.063064e-52 | -8.615850e-47 |
| Msa0188890 | Msa0679700 | 0.806451 | 8.174852e-50 | -8.615850e-47 |
| Msa0189300 | Msa0679700 | 0.847765 | 9.401431e-60 | -8.615850e-47 |
| Msa0194540 | Msa0679700 | 0.820135 | 8.046459e-53 | -8.615850e-47 |
| Msa0220720 | Msa0679700 | 0.802485 | 5.486380e-49 | -8.615850e-47 |
| Msa0229170 | Msa0679700 | 0.824831 | 6.521067e-54 | -8.615850e-47 |
| Msa0231100 | Msa0679700 | 0.813744 | 2.192157e-51 | -8.615850e-47 |
| Msa0231380 | Msa0679700 | 0.811878 | 5.615496e-51 | -8.615850e-47 |
| Msa0231660 | Msa0679700 | 0.854577 | 1.122169e-61 | -8.615850e-47 |
| Msa0428240 | Msa0679700 | 0.820986 | 5.131070e-53 | -8.615850e-47 |
| Msa0474590 | Msa0679700 | 0.833363 | 5.568288e-56 | -8.615850e-47 |
| Msa0244780 | Msa0679700 | 0.810892 | 9.194855e-51 | -8.615850e-47 |
| Msa0268130 | Msa0679700 | 0.805869 | 1.084096e-49 | -8.615850e-47 |
| Msa0270660 | Msa0679700 | 0.811303 | 7.490703e-51 | -8.615850e-47 |
| Msa0271530 | Msa0679700 | 0.820128 | 8.078657e-53 | -8.615850e-47 |
| Msa0277450 | Msa0679700 | 0.802807 | 4.709321e-49 | -8.615850e-47 |
| Msa0298990 | Msa0679700 | 0.802486 | 5.484977e-49 | -8.615850e-47 |
| Msa0299870 | Msa0679700 | 0.802150 | 6.430077e-49 | -8.615850e-47 |
| Msa0309750 | Msa0679700 | 0.818664 | 1.741704e-52 | -8.615850e-47 |
| Msa0357900 | Msa0679700 | 0.807631 | 4.599422e-50 | -8.615850e-47 |
| Msa0519130 | Msa0679700 | 0.815483 | 9.034293e-52 | -8.615850e-47 |
| Msa0526540 | Msa0679700 | 0.848485 | 5.948320e-60 | -8.615850e-47 |
| Msa0535820 | Msa0679700 | 0.801072 | 1.070088e-48 | -8.615850e-47 |
| Msa0554290 | Msa0679700 | 0.804165 | 2.462028e-49 | -8.615850e-47 |
| Msa0571920 | Msa0679700 | 0.809461 | 1.870800e-50 | -8.615850e-47 |
| Msa0576940 | Msa0679700 | 0.837248 | 5.812867e-57 | -8.615850e-47 |
| Msa0581280 | Msa0679700 | 0.801461 | 8.906717e-49 | -8.615850e-47 |
| Msa0601150 | Msa0679700 | 0.806528 | 7.872115e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679700 | MtrunA17_Chr4g0009801 | 97.297 | 74 | 2 | 0 | 1 | 74 | 1 | 74 | 6.61e-48 | 153 |
| Msa0679700 | MtrunA17_Chr4g0024901 | 51.553 | 161 | 55 | 5 | 79 | 236 | 1 | 141 | 5.52e-45 | 147 |
| Msa0679700 | MtrunA17_Chr8g0334921 | 50.932 | 161 | 56 | 5 | 79 | 236 | 1 | 141 | 2.49e-44 | 145 |
| Msa0679700 | MtrunA17_Chr6g0456751 | 50.000 | 154 | 58 | 3 | 84 | 236 | 1 | 136 | 2.48e-41 | 139 |
| Msa0679700 | MtrunA17_Chr6g0456801 | 50.968 | 155 | 55 | 4 | 84 | 236 | 1 | 136 | 3.86e-41 | 137 |
| Msa0679700 | MtrunA17_Chr6g0474241 | 48.052 | 154 | 61 | 3 | 84 | 236 | 1 | 136 | 1.89e-39 | 134 |
| Msa0679700 | MtrunA17_Chr4g0009771 | 48.667 | 150 | 64 | 6 | 90 | 236 | 3 | 142 | 1.52e-36 | 125 |
| Msa0679700 | MtrunA17_Chr6g0460401 | 46.753 | 154 | 64 | 4 | 84 | 236 | 1 | 137 | 1.81e-36 | 126 |
| Msa0679700 | MtrunA17_Chr6g0456761 | 46.104 | 154 | 64 | 4 | 84 | 235 | 1 | 137 | 9.56e-36 | 124 |
| Msa0679700 | MtrunA17_Chr6g0460471 | 44.805 | 154 | 67 | 4 | 84 | 236 | 1 | 137 | 1.87e-33 | 118 |
| Msa0679700 | MtrunA17_Chr7g0235321 | 42.857 | 161 | 61 | 6 | 84 | 236 | 1 | 138 | 2.06e-32 | 115 |
| Msa0679700 | MtrunA17_Chr6g0474651 | 42.675 | 157 | 61 | 3 | 84 | 236 | 1 | 132 | 3.07e-31 | 112 |
| Msa0679700 | MtrunA17_Chr7g0220851 | 46.575 | 146 | 57 | 5 | 84 | 228 | 1 | 126 | 2.43e-30 | 110 |
| Msa0679700 | MtrunA17_Chr7g0235311 | 40.476 | 168 | 70 | 6 | 78 | 236 | 8 | 154 | 7.66e-30 | 109 |
| Msa0679700 | MtrunA17_Chr7g0220861 | 45.890 | 146 | 58 | 5 | 84 | 228 | 1 | 126 | 8.88e-30 | 108 |
| Msa0679700 | MtrunA17_Chr8g0373771 | 40.625 | 160 | 68 | 4 | 84 | 236 | 1 | 140 | 2.42e-29 | 107 |
| Msa0679700 | MtrunA17_Chr4g0031531 | 62.500 | 72 | 27 | 0 | 1 | 72 | 1 | 72 | 2.64e-29 | 105 |
| Msa0679700 | MtrunA17_Chr7g0226041 | 39.869 | 153 | 75 | 3 | 84 | 236 | 1 | 136 | 1.75e-26 | 100 |
| Msa0679700 | MtrunA17_Chr6g0483961 | 53.488 | 86 | 39 | 1 | 152 | 236 | 1 | 86 | 3.20e-26 | 97.8 |
| Msa0679700 | MtrunA17_Chr3g0106811 | 45.238 | 126 | 66 | 2 | 106 | 230 | 3 | 126 | 4.54e-26 | 99.4 |
| Msa0679700 | MtrunA17_Chr7g0226071 | 33.987 | 153 | 90 | 1 | 84 | 236 | 1 | 142 | 3.96e-22 | 89.0 |
| Msa0679700 | MtrunA17_Chr6g0485131 | 48.750 | 80 | 41 | 0 | 149 | 228 | 11 | 90 | 2.30e-21 | 85.9 |
| Msa0679700 | MtrunA17_Chr7g0226061 | 32.680 | 153 | 92 | 1 | 84 | 236 | 1 | 142 | 2.60e-20 | 84.3 |
| Msa0679700 | MtrunA17_Chr7g0226121 | 32.026 | 153 | 91 | 2 | 84 | 236 | 1 | 140 | 2.70e-20 | 84.0 |
| Msa0679700 | MtrunA17_Chr1g0195291 | 30.625 | 160 | 82 | 7 | 84 | 236 | 1 | 138 | 8.98e-15 | 69.3 |
| Msa0679700 | MtrunA17_Chr1g0195341 | 30.625 | 160 | 82 | 7 | 84 | 236 | 1 | 138 | 8.98e-15 | 69.3 |
| Msa0679700 | MtrunA17_Chr6g0449161 | 38.793 | 116 | 52 | 5 | 132 | 236 | 51 | 158 | 1.40e-14 | 68.9 |
| Msa0679700 | MtrunA17_Chr6g0449181 | 39.655 | 116 | 51 | 6 | 132 | 236 | 35 | 142 | 2.02e-14 | 68.2 |
| Msa0679700 | MtrunA17_Chr1g0175681 | 31.646 | 158 | 82 | 6 | 84 | 236 | 2 | 138 | 1.19e-13 | 66.6 |
| Msa0679700 | MtrunA17_Chr1g0158911 | 38.614 | 101 | 52 | 4 | 141 | 236 | 39 | 134 | 9.65e-13 | 63.5 |
| Msa0679700 | MtrunA17_Chr1g0166491 | 32.075 | 159 | 77 | 9 | 84 | 236 | 1 | 134 | 2.76e-11 | 60.1 |
| Msa0679700 | MtrunA17_Chr3g0134801 | 30.282 | 142 | 72 | 6 | 90 | 228 | 8 | 125 | 4.92e-11 | 58.5 |
| Msa0679700 | MtrunA17_Chr6g0454481 | 33.884 | 121 | 71 | 4 | 122 | 236 | 18 | 135 | 7.37e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679700 | AT3G46560.1 | 63.889 | 72 | 26 | 0 | 1 | 72 | 1 | 72 | 3.93e-29 | 105 |
Find 44 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATAACGTAGGACTAAA+TGG | 0.173425 | 4_4:+37874393 | None:intergenic |
| GGATTATGGACACTCAATTT+TGG | 0.208045 | 4_4:-37874453 | Msa0679700:CDS |
| TACTGTTTGGATTCTCAATA+AGG | 0.265022 | 4_4:-37874544 | Msa0679700:CDS |
| AAGATAACGATCTTGGATTA+TGG | 0.283626 | 4_4:-37874467 | Msa0679700:CDS |
| CAATGAACATTCAAGCTTGT+TGG | 0.285799 | 4_4:+37874498 | None:intergenic |
| TTCAAGCTTGTTGGATTTGT+TGG | 0.288593 | 4_4:+37874507 | None:intergenic |
| CTTGTTGGATTTGTTGGATA+TGG | 0.319987 | 4_4:+37874513 | None:intergenic |
| TAACAATGTAACTGTTACTA+AGG | 0.341326 | 4_4:-37874601 | Msa0679700:CDS |
| CTATTGTTTATGTAGTTTCA+TGG | 0.344387 | 4_4:-37876646 | Msa0679700:intron |
| GATTGCACATGGGAAATATA+CGG | 0.377743 | 4_4:-37874294 | Msa0679700:CDS |
| AAATCTAAAGATAACGATCT+TGG | 0.392486 | 4_4:-37874474 | Msa0679700:CDS |
| TGAATCAAAATTGTCGTCCT+TGG | 0.417143 | 4_4:-37874257 | Msa0679700:CDS |
| CTTCTGGCAAGGTTACTGTT+TGG | 0.423215 | 4_4:-37874557 | Msa0679700:CDS |
| TAAGAAAAGAATGACTACTA+TGG | 0.430118 | 4_4:-37879555 | Msa0679700:CDS |
| CATAGCATCTGTCATACCTT+TGG | 0.441467 | 4_4:+37874316 | None:intergenic |
| GATGTGCTGGAAAATACTTA+AGG | 0.445369 | 4_4:-37876902 | Msa0679700:intron |
| AAGGCTATACCTATAGCTTC+TGG | 0.445783 | 4_4:-37874573 | Msa0679700:CDS |
| AATCATACTACTCGCATTTG+AGG | 0.462347 | 4_4:-37874649 | Msa0679700:CDS |
| GCTAGGGAGACTATAGCTAT+AGG | 0.470417 | 4_4:-37874627 | Msa0679700:CDS |
| GTAACCTTGCCAGAAGCTAT+AGG | 0.480966 | 4_4:+37874564 | None:intergenic |
| TGAATAACGTAGGACTAAAT+GGG | 0.481090 | 4_4:+37874394 | None:intergenic |
| CTGAGGACACATGTTTCCTC+TGG | 0.481217 | 4_4:+37876924 | None:intergenic |
| AACTGTTACTAAGGTTAGAA+AGG | 0.482486 | 4_4:-37874592 | Msa0679700:CDS |
| ACATGTGTCCTCAGATGTGC+TGG | 0.504009 | 4_4:-37876915 | Msa0679700:CDS |
| GGACTAAATGGGATAAATTG+TGG | 0.522542 | 4_4:+37874405 | None:intergenic |
| ATTGCGTCAATTCATTCTAT+CGG | 0.526040 | 4_4:-37876962 | Msa0679700:CDS |
| TACTACTCGCATTTGAGGCT+AGG | 0.527226 | 4_4:-37874644 | Msa0679700:CDS |
| AACAGCTTCAAACTCGTGAT+AGG | 0.528764 | 4_4:-37879529 | Msa0679700:intron |
| ACATGGGAAATATACGGAAA+TGG | 0.528860 | 4_4:-37874288 | Msa0679700:CDS |
| TGATCTATAAATTAGGATTG+TGG | 0.552714 | 4_4:-37874745 | Msa0679700:intron |
| ACTACTCGCATTTGAGGCTA+GGG | 0.556585 | 4_4:-37874643 | Msa0679700:CDS |
| ATCATGCTGTATACGACCAA+AGG | 0.588916 | 4_4:-37874332 | Msa0679700:CDS |
| TACAGCATGATAATAAACAC+GGG | 0.631076 | 4_4:+37874344 | None:intergenic |
| ATTAATTGGACACTTTACCA+AGG | 0.656848 | 4_4:+37874240 | None:intergenic |
| ACAGATGCTATGATTGCACA+TGG | 0.659244 | 4_4:-37874305 | Msa0679700:CDS |
| TATACCTATAGCTTCTGGCA+AGG | 0.667349 | 4_4:-37874568 | Msa0679700:CDS |
| AGGCATTGTGCATACAACAA+TGG | 0.686365 | 4_4:-37874712 | Msa0679700:CDS |
| GAGTTCGTTGAACAAGCCAG+AGG | 0.696062 | 4_4:-37876940 | Msa0679700:CDS |
| CATTGTGCATACAACAATGG+CGG | 0.696788 | 4_4:-37874709 | Msa0679700:CDS |
| ATACAGCATGATAATAAACA+CGG | 0.700024 | 4_4:+37874343 | None:intergenic |
| AAACTGCAATTGAATAACGT+AGG | 0.701167 | 4_4:+37874384 | None:intergenic |
| ACAGCATGATAATAAACACG+GGG | 0.727475 | 4_4:+37874345 | None:intergenic |
| CAGATGCTATGATTGCACAT+GGG | 0.770236 | 4_4:-37874304 | Msa0679700:CDS |
| CAGCATGATAATAAACACGG+GGG | 0.787536 | 4_4:+37874346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATCATATATAGAT+TGG | - | chr4_4:37874416-37874435 | Msa0679700:CDS | 10.0% |
| !! | ATAAAAATCATATATAGATT+GGG | - | chr4_4:37874417-37874436 | Msa0679700:CDS | 10.0% |
| !!! | AAAAATAAATATCAAGTTTT+CGG | - | chr4_4:37877734-37877753 | Msa0679700:intron | 10.0% |
| !!! | TATATAATAGAATTTTACAT+AGG | + | chr4_4:37878019-37878038 | None:intergenic | 10.0% |
| !! | AATTAAGTACAATAAAAAAA+TGG | + | chr4_4:37878356-37878375 | None:intergenic | 10.0% |
| !!! | AAAAATTGTTTTTTTTTTAG+GGG | + | chr4_4:37878561-37878580 | None:intergenic | 10.0% |
| !! | TAAAAATCATATATAGATTG+GGG | - | chr4_4:37874418-37874437 | Msa0679700:CDS | 15.0% |
| !! | TTTATTTATTACTAGAGAAA+TGG | + | chr4_4:37874825-37874844 | None:intergenic | 15.0% |
| !! | TAATTCAATGTATTTAATTG+TGG | - | chr4_4:37875210-37875229 | Msa0679700:intron | 15.0% |
| !!! | TTACTTTTCTTTTTTTGAAT+CGG | + | chr4_4:37875717-37875736 | None:intergenic | 15.0% |
| !! | TTCAAAAAAAGAAAAGTAAA+TGG | - | chr4_4:37875718-37875737 | Msa0679700:intron | 15.0% |
| !!! | TCATTTTATTCTATCTATTA+AGG | + | chr4_4:37877183-37877202 | None:intergenic | 15.0% |
| !! | TAATTGTATGTTAGATTTAA+AGG | - | chr4_4:37877938-37877957 | Msa0679700:intron | 15.0% |
| !!! | TATGTATATATTATCACTTT+TGG | - | chr4_4:37878377-37878396 | Msa0679700:intron | 15.0% |
| !! | TTGTTAAATCACATTATAAT+AGG | + | chr4_4:37878528-37878547 | None:intergenic | 15.0% |
| !!! | ATCCTTTTATGAAATTAAAT+GGG | + | chr4_4:37879070-37879089 | None:intergenic | 15.0% |
| !!! | TATCCTTTTATGAAATTAAA+TGG | + | chr4_4:37879071-37879090 | None:intergenic | 15.0% |
| !! | TATTTACTGATCTATAAATT+AGG | - | chr4_4:37879146-37879165 | Msa0679700:intron | 15.0% |
| !!! | AATTTTATAGTAATTAGACT+TGG | + | chr4_4:37879217-37879236 | None:intergenic | 15.0% |
| !!! | CTGTTTTTTTTTGTTGAAAA+TGG | - | chr4_4:37874277-37874296 | Msa0679700:CDS | 20.0% |
| !!! | AAAATGGATAAGAACATTTT+TGG | - | chr4_4:37874293-37874312 | Msa0679700:CDS | 20.0% |
| !! | GTAAACATATTAAGCATTAT+GGG | - | chr4_4:37874575-37874594 | Msa0679700:CDS | 20.0% |
| !! | TTTAACGTAATTATATGTGT+TGG | - | chr4_4:37875045-37875064 | Msa0679700:intron | 20.0% |
| !! | TCTATTGTGTTTATAGTAAA+TGG | - | chr4_4:37875618-37875637 | Msa0679700:intron | 20.0% |
| !!! | CCATTTACTTTTTTTTTGAA+TGG | + | chr4_4:37875644-37875663 | None:intergenic | 20.0% |
| !! | CCATTCAAAAAAAAAGTAAA+TGG | - | chr4_4:37875641-37875660 | Msa0679700:intron | 20.0% |
| !! | ATAACTAAAAACACAATACA+GGG | + | chr4_4:37875777-37875796 | None:intergenic | 20.0% |
| !! | AATAACTAAAAACACAATAC+AGG | + | chr4_4:37875778-37875797 | None:intergenic | 20.0% |
| !! | TTTAGTTATTCCATATCAAA+TGG | - | chr4_4:37875788-37875807 | Msa0679700:intron | 20.0% |
| !!! | TTTAACTTTAACTGTACATT+TGG | - | chr4_4:37876256-37876275 | Msa0679700:intron | 20.0% |
| !!! | CTTTTATATGTGTACAATTT+CGG | + | chr4_4:37876704-37876723 | None:intergenic | 20.0% |
| !! | ATAGATAGAATAAAATGAAC+TGG | - | chr4_4:37877185-37877204 | Msa0679700:intron | 20.0% |
| !! | ATACAAATTATGTAACATCA+AGG | - | chr4_4:37877334-37877353 | Msa0679700:intron | 20.0% |
| !! | AACAAAAGAAGATAAAATCA+GGG | + | chr4_4:37877508-37877527 | None:intergenic | 20.0% |
| !! | AAACAAAAGAAGATAAAATC+AGG | + | chr4_4:37877509-37877528 | None:intergenic | 20.0% |
| !! | ATTTAACAATATCACATAAG+TGG | + | chr4_4:37877581-37877600 | None:intergenic | 20.0% |
| !! | TTAAATTTGAATGTCTATGA+CGG | - | chr4_4:37877595-37877614 | Msa0679700:intron | 20.0% |
| !!! | TTTTTTTTTTGCCAAAAACT+AGG | + | chr4_4:37877825-37877844 | None:intergenic | 20.0% |
| !! | CATTTATGCATAAAAAAAGA+AGG | + | chr4_4:37877862-37877881 | None:intergenic | 20.0% |
| !!! | TTCATATTGCATTATTTTAC+TGG | + | chr4_4:37878128-37878147 | None:intergenic | 20.0% |
| !! | AGTGCATAATGATAAATAAA+TGG | + | chr4_4:37878191-37878210 | None:intergenic | 20.0% |
| !! | CTATTATTATTGAATTGCAT+TGG | - | chr4_4:37878289-37878308 | Msa0679700:intron | 20.0% |
| !!! | ACATCATTGATTTCATTTAT+TGG | + | chr4_4:37878631-37878650 | None:intergenic | 20.0% |
| !!! | ATCCCATTTAATTTCATAAA+AGG | - | chr4_4:37879065-37879084 | Msa0679700:intron | 20.0% |
| ! | ACAAAAAAAAACAGTTACAG+AGG | + | chr4_4:37874271-37874290 | None:intergenic | 25.0% |
| !! | ATTCTTTTCTTATCTTCTTC+AGG | + | chr4_4:37874335-37874354 | None:intergenic | 25.0% |
| ! | TAAGAAAAGAATGACTACTA+TGG | - | chr4_4:37874343-37874362 | Msa0679700:CDS | 25.0% |
| ! | TATGTTTACCCAAACAAATA+GGG | + | chr4_4:37874564-37874583 | None:intergenic | 25.0% |
| ! | ATATGTTTACCCAAACAAAT+AGG | + | chr4_4:37874565-37874584 | None:intergenic | 25.0% |
| ! | GGTAAACATATTAAGCATTA+TGG | - | chr4_4:37874574-37874593 | Msa0679700:CDS | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr4_4:37874717-37874736 | None:intergenic | 25.0% |
| ! | ATATATGAGAAGTCCTTAAA+GGG | + | chr4_4:37874787-37874806 | None:intergenic | 25.0% |
| ! | TATATATGAGAAGTCCTTAA+AGG | + | chr4_4:37874788-37874807 | None:intergenic | 25.0% |
| !!! | ACTGTTTTTATTAGCTATTC+TGG | - | chr4_4:37874876-37874895 | Msa0679700:intron | 25.0% |
| ! | TCATGGTCAAATATTTATGA+TGG | - | chr4_4:37875426-37875445 | Msa0679700:intron | 25.0% |
| !!! | TTAAAGCATTCATTTTGATG+AGG | - | chr4_4:37875549-37875568 | Msa0679700:intron | 25.0% |
| ! | TTACTATAAACACAATAGAG+AGG | + | chr4_4:37875617-37875636 | None:intergenic | 25.0% |
| !! | GCTTGTTGGTTAATAATATT+TGG | - | chr4_4:37875691-37875710 | Msa0679700:intron | 25.0% |
| ! | ACTATTTAGTACAGAATGTT+TGG | - | chr4_4:37876471-37876490 | Msa0679700:intron | 25.0% |
| !! | AAATTTTCAGATATCAACCA+AGG | - | chr4_4:37877040-37877059 | Msa0679700:intron | 25.0% |
| !!! | TCTTTTTTACTGTCAATAAC+TGG | - | chr4_4:37877129-37877148 | Msa0679700:intron | 25.0% |
| !!! | CTTTTTTACTGTCAATAACT+GGG | - | chr4_4:37877130-37877149 | Msa0679700:intron | 25.0% |
| ! | AAATGAACTGGAATTTCTAA+AGG | - | chr4_4:37877197-37877216 | Msa0679700:intron | 25.0% |
| ! | CTATTGTTTATGTAGTTTCA+TGG | - | chr4_4:37877252-37877271 | Msa0679700:intron | 25.0% |
| ! | TAACAAATGAAAAAAGCGAA+TGG | + | chr4_4:37877300-37877319 | None:intergenic | 25.0% |
| !!! | CTGTTTGAATCATTTTTATC+TGG | - | chr4_4:37877465-37877484 | Msa0679700:intron | 25.0% |
| ! | TAAATTTGAATGTCTATGAC+GGG | - | chr4_4:37877596-37877615 | Msa0679700:intron | 25.0% |
| ! | TTTACTAGATAAACACATGT+TGG | - | chr4_4:37878093-37878112 | Msa0679700:intron | 25.0% |
| ! | TTACTAGATAAACACATGTT+GGG | - | chr4_4:37878094-37878113 | Msa0679700:intron | 25.0% |
| ! | TCAATAATAATAGTTCAGCA+AGG | + | chr4_4:37878282-37878301 | None:intergenic | 25.0% |
| !! | ATAGCACACTCAAATAATTT+TGG | - | chr4_4:37878416-37878435 | Msa0679700:intron | 25.0% |
| !! | AACAACTCATCTAAACTTTT+TGG | - | chr4_4:37878821-37878840 | Msa0679700:intron | 25.0% |
| !!! | CTTTTAATTGGGATAAATTC+TGG | + | chr4_4:37878966-37878985 | None:intergenic | 25.0% |
| !!! | ATAGTGTAGCTCTTTTAATT+GGG | + | chr4_4:37878977-37878996 | None:intergenic | 25.0% |
| !! | AATAGTGTAGCTCTTTTAAT+TGG | + | chr4_4:37878978-37878997 | None:intergenic | 25.0% |
| ! | AATTGTCAAGATAATGAAGA+TGG | + | chr4_4:37879031-37879050 | None:intergenic | 25.0% |
| !!! | TAAATGGGATTTGATTTTGA+TGG | + | chr4_4:37879055-37879074 | None:intergenic | 25.0% |
| ! | TGATCTATAAATTAGGATTG+TGG | - | chr4_4:37879153-37879172 | Msa0679700:intron | 25.0% |
| ! | TAACAATGTAACTGTTACTA+AGG | - | chr4_4:37879297-37879316 | Msa0679700:intron | 25.0% |
| ! | AAATCTAAAGATAACGATCT+TGG | - | chr4_4:37879424-37879443 | Msa0679700:intron | 25.0% |
| ! | ATTGTGGTTTGAATGAAAAA+TGG | + | chr4_4:37879480-37879499 | None:intergenic | 25.0% |
| !! | TATTCAATTGCAGTTTTACA+TGG | - | chr4_4:37879521-37879540 | Msa0679700:intron | 25.0% |
| ! | ATACAGCATGATAATAAACA+CGG | + | chr4_4:37879558-37879577 | None:intergenic | 25.0% |
| ! | AAACAGTTACAGAGGTTTTT+GGG | + | chr4_4:37874263-37874282 | None:intergenic | 30.0% |
| ! | AAAACAGTTACAGAGGTTTT+TGG | + | chr4_4:37874264-37874283 | None:intergenic | 30.0% |
| ATGTTATGATGTGCTGAAAA+TGG | - | chr4_4:37874461-37874480 | Msa0679700:CDS | 30.0% | |
| !! | TAGAATGTGTTGATTCTAGT+TGG | - | chr4_4:37874530-37874549 | Msa0679700:CDS | 30.0% |
| CAAATATGCCCTATTTGTTT+GGG | - | chr4_4:37874553-37874572 | Msa0679700:CDS | 30.0% | |
| ! | TCGTTTGGATTGACTTATTT+CGG | - | chr4_4:37874599-37874618 | Msa0679700:CDS | 30.0% |
| CAAAAATAAGCCATTCCAAA+CGG | - | chr4_4:37874760-37874779 | Msa0679700:intron | 30.0% | |
| AAAAATAAGCCATTCCAAAC+GGG | - | chr4_4:37874761-37874780 | Msa0679700:intron | 30.0% | |
| AGTTAGTAGATATGCTTGAA+TGG | - | chr4_4:37875170-37875189 | Msa0679700:intron | 30.0% | |
| ATAATATCAAAGTTGCATCG+TGG | + | chr4_4:37875236-37875255 | None:intergenic | 30.0% | |
| TTATCAATTGAGTACCATGA+TGG | + | chr4_4:37875390-37875409 | None:intergenic | 30.0% | |
| GTGTATTCATGATCTAAACA+GGG | + | chr4_4:37875529-37875548 | None:intergenic | 30.0% | |
| AGTGTATTCATGATCTAAAC+AGG | + | chr4_4:37875530-37875549 | None:intergenic | 30.0% | |
| TACACATTCTTATAGTCTAG+AGG | + | chr4_4:37875592-37875611 | None:intergenic | 30.0% | |
| ACTCAAAACCTTAAGACATT+GGG | + | chr4_4:37875922-37875941 | None:intergenic | 30.0% | |
| AACTCAAAACCTTAAGACAT+TGG | + | chr4_4:37875923-37875942 | None:intergenic | 30.0% | |
| TTCTGCTATGTTATAGTGTT+GGG | + | chr4_4:37876020-37876039 | None:intergenic | 30.0% | |
| ATTCTGCTATGTTATAGTGT+TGG | + | chr4_4:37876021-37876040 | None:intergenic | 30.0% | |
| ! | ATTTTCAGCATTGTCAATTG+TGG | + | chr4_4:37876166-37876185 | None:intergenic | 30.0% |
| ACAATTGACAATGCTGAAAA+TGG | - | chr4_4:37876165-37876184 | Msa0679700:intron | 30.0% | |
| ATCAGCATTAACATGTTAAC+TGG | - | chr4_4:37876285-37876304 | Msa0679700:intron | 30.0% | |
| ! | AACATGTTAACTGGTGATTT+TGG | - | chr4_4:37876294-37876313 | Msa0679700:intron | 30.0% |
| ATCAGTCAACTCAATTACTA+TGG | + | chr4_4:37876324-37876343 | None:intergenic | 30.0% | |
| !! | TAGTAATTGAGTTGACTGAT+TGG | - | chr4_4:37876324-37876343 | Msa0679700:intron | 30.0% |
| CATGCAATGTTGTTAAATAG+CGG | - | chr4_4:37876392-37876411 | Msa0679700:intron | 30.0% | |
| TGTACTAAATAGTGTATTCC+GGG | + | chr4_4:37876464-37876483 | None:intergenic | 30.0% | |
| CTGTACTAAATAGTGTATTC+CGG | + | chr4_4:37876465-37876484 | None:intergenic | 30.0% | |
| TACAGAATGTTTGGAAATAG+CGG | - | chr4_4:37876480-37876499 | Msa0679700:intron | 30.0% | |
| ATAGTGCTATAGTAAATGAC+AGG | + | chr4_4:37876598-37876617 | None:intergenic | 30.0% | |
| !! | TATTGACAGTATTGATCACA+TGG | - | chr4_4:37876661-37876680 | Msa0679700:intron | 30.0% |
| ! | TGAGTGCAAAAGTTTTCTTT+TGG | - | chr4_4:37876772-37876791 | Msa0679700:intron | 30.0% |
| ATTGCGTCAATTCATTCTAT+CGG | - | chr4_4:37876936-37876955 | Msa0679700:CDS | 30.0% | |
| CTACAACAGACAAACAATAA+TGG | - | chr4_4:37877068-37877087 | Msa0679700:intron | 30.0% | |
| ! | AACTGGAATTTCTAAAGGTA+AGG | - | chr4_4:37877202-37877221 | Msa0679700:intron | 30.0% |
| TTATGTAACATCAAGGTTCA+AGG | - | chr4_4:37877341-37877360 | Msa0679700:intron | 30.0% | |
| AAGGCTTAAATATTTCCTAG+AGG | - | chr4_4:37877360-37877379 | Msa0679700:intron | 30.0% | |
| AGGCTTAAATATTTCCTAGA+GGG | - | chr4_4:37877361-37877380 | Msa0679700:intron | 30.0% | |
| ! | CAACAAAACCAAATTTTACC+CGG | + | chr4_4:37877395-37877414 | None:intergenic | 30.0% |
| TAACAAAAAAAGTGAACCTG+AGG | - | chr4_4:37877544-37877563 | Msa0679700:intron | 30.0% | |
| AACAAAAAAAGTGAACCTGA+GGG | - | chr4_4:37877545-37877564 | Msa0679700:intron | 30.0% | |
| AAATTTGAATGTCTATGACG+GGG | - | chr4_4:37877597-37877616 | Msa0679700:intron | 30.0% | |
| TATCAAAGAGTGGAATGATA+AGG | - | chr4_4:37877652-37877671 | Msa0679700:intron | 30.0% | |
| TTGAAATGTTAGAATTGTGC+TGG | + | chr4_4:37877702-37877721 | None:intergenic | 30.0% | |
| GAATTGATACATCACATATG+TGG | - | chr4_4:37877797-37877816 | Msa0679700:intron | 30.0% | |
| TTCAGTTACAGAAAAATGCA+AGG | + | chr4_4:37877968-37877987 | None:intergenic | 30.0% | |
| TACTAGATAAACACATGTTG+GGG | - | chr4_4:37878095-37878114 | Msa0679700:intron | 30.0% | |
| ATGATTGAATTGCTTTCATG+AGG | + | chr4_4:37878222-37878241 | None:intergenic | 30.0% | |
| ATAGACAGACACTAAGATAA+AGG | + | chr4_4:37878333-37878352 | None:intergenic | 30.0% | |
| AGATTTGCAATGAAAAGTCA+AGG | + | chr4_4:37878880-37878899 | None:intergenic | 30.0% | |
| ! | AGATTTCACACACTCAATTT+TGG | - | chr4_4:37878915-37878934 | Msa0679700:intron | 30.0% |
| AACTGTTACTAAGGTTAGAA+AGG | - | chr4_4:37879306-37879325 | Msa0679700:intron | 30.0% | |
| TACTGTTTGGATTCTCAATA+AGG | - | chr4_4:37879354-37879373 | Msa0679700:intron | 30.0% | |
| AAGATAACGATCTTGGATTA+TGG | - | chr4_4:37879431-37879450 | Msa0679700:intron | 30.0% | |
| TGAATAACGTAGGACTAAAT+GGG | + | chr4_4:37879507-37879526 | None:intergenic | 30.0% | |
| TTGAATAACGTAGGACTAAA+TGG | + | chr4_4:37879508-37879527 | None:intergenic | 30.0% | |
| AAACTGCAATTGAATAACGT+AGG | + | chr4_4:37879517-37879536 | None:intergenic | 30.0% | |
| TACAGCATGATAATAAACAC+GGG | + | chr4_4:37879557-37879576 | None:intergenic | 30.0% | |
| !!! | ACGACAATTTTGATTCAAAC+AGG | + | chr4_4:37879638-37879657 | None:intergenic | 30.0% |
| GCAAATATGCCCTATTTGTT+TGG | - | chr4_4:37874552-37874571 | Msa0679700:CDS | 35.0% | |
| TAGCTATTCTGGACAGTTTA+TGG | - | chr4_4:37874887-37874906 | Msa0679700:intron | 35.0% | |
| AGCTATTCTGGACAGTTTAT+GGG | - | chr4_4:37874888-37874907 | Msa0679700:intron | 35.0% | |
| ! | GACATGTCATAAGTTGTTTC+CGG | + | chr4_4:37874920-37874939 | None:intergenic | 35.0% |
| CAACTCATAAAGCAATGACA+CGG | - | chr4_4:37874976-37874995 | Msa0679700:intron | 35.0% | |
| !!! | TATAGCACTGACACTTTTCA+TGG | + | chr4_4:37875127-37875146 | None:intergenic | 35.0% |
| ATGTTGTCAAATATCCACCA+TGG | - | chr4_4:37875261-37875280 | Msa0679700:intron | 35.0% | |
| ! | AATTGAGTACCATGATGGAA+AGG | + | chr4_4:37875385-37875404 | None:intergenic | 35.0% |
| CATGAAAAAACATGACGTTG+CGG | - | chr4_4:37875472-37875491 | Msa0679700:intron | 35.0% | |
| TGAATTAACCCATACTCGAA+TGG | + | chr4_4:37875744-37875763 | None:intergenic | 35.0% | |
| TATAGTCCGCTATATGACAA+CGG | + | chr4_4:37875815-37875834 | None:intergenic | 35.0% | |
| !! | TCCACTTTTCTAAGCAATGT+GGG | + | chr4_4:37875866-37875885 | None:intergenic | 35.0% |
| CCTTAAGACATTGGGTTTAT+TGG | + | chr4_4:37875914-37875933 | None:intergenic | 35.0% | |
| CCAATAAACCCAATGTCTTA+AGG | - | chr4_4:37875911-37875930 | Msa0679700:intron | 35.0% | |
| !!! | TAAGGTTTTGAGTTGAACAG+TGG | - | chr4_4:37875929-37875948 | Msa0679700:intron | 35.0% |
| GCTACCATGTTATAGTATTG+CGG | - | chr4_4:37876425-37876444 | Msa0679700:intron | 35.0% | |
| AACTCCGCAATACTATAACA+TGG | + | chr4_4:37876432-37876451 | None:intergenic | 35.0% | |
| ACACTATGCAATAGTGCTAT+AGG | + | chr4_4:37876516-37876535 | None:intergenic | 35.0% | |
| ACTATTGCATAGTGTTGTAG+CGG | - | chr4_4:37876521-37876540 | Msa0679700:intron | 35.0% | |
| TGATCACATGGCATTTACTA+TGG | - | chr4_4:37876673-37876692 | Msa0679700:intron | 35.0% | |
| TGGTTACTTCACTCTTTCTT+TGG | - | chr4_4:37876792-37876811 | Msa0679700:intron | 35.0% | |
| TCCAACAAATTTGCAGTCTT+AGG | - | chr4_4:37876879-37876898 | Msa0679700:intron | 35.0% | |
| ACCTAAGACTGCAAATTTGT+TGG | + | chr4_4:37876883-37876902 | None:intergenic | 35.0% | |
| GATGTGCTGGAAAATACTTA+AGG | - | chr4_4:37876996-37877015 | Msa0679700:CDS | 35.0% | |
| ! | TTAAGGTTTTCATCGCAAGT+GGG | - | chr4_4:37877013-37877032 | Msa0679700:intron | 35.0% |
| TTCTTCAACCGGGTAAAATT+TGG | - | chr4_4:37877384-37877403 | Msa0679700:intron | 35.0% | |
| !!! | TTTGGTTTTGTTGCTGAACA+AGG | - | chr4_4:37877402-37877421 | Msa0679700:intron | 35.0% |
| !! | GAAGTTGATGTATCAAAGAG+TGG | - | chr4_4:37877642-37877661 | Msa0679700:intron | 35.0% |
| !! | CATATGTGGAACCTAGTTTT+TGG | - | chr4_4:37877811-37877830 | Msa0679700:intron | 35.0% |
| TGTAACTGAAGACTCATTAC+AGG | - | chr4_4:37877978-37877997 | Msa0679700:intron | 35.0% | |
| !! | CATCTTTTGATTCTCTCTTG+AGG | - | chr4_4:37878239-37878258 | Msa0679700:intron | 35.0% |
| ! | TCCACAAAAGTTGACTCAAT+TGG | - | chr4_4:37878692-37878711 | Msa0679700:intron | 35.0% |
| ! | ACCAATTGAGTCAACTTTTG+TGG | + | chr4_4:37878696-37878715 | None:intergenic | 35.0% |
| GATATTCTCACAACGATGAT+GGG | + | chr4_4:37878756-37878775 | None:intergenic | 35.0% | |
| AGATATTCTCACAACGATGA+TGG | + | chr4_4:37878757-37878776 | None:intergenic | 35.0% | |
| CATCGTTGTGAGAATATCTT+TGG | - | chr4_4:37878758-37878777 | Msa0679700:intron | 35.0% | |
| ! | TTTCACACACTCAATTTTGG+TGG | - | chr4_4:37878918-37878937 | Msa0679700:intron | 35.0% |
| TGTCAAGATAATGAAGATGG+CGG | + | chr4_4:37879028-37879047 | None:intergenic | 35.0% | |
| AATCATACTACTCGCATTTG+AGG | - | chr4_4:37879249-37879268 | Msa0679700:intron | 35.0% | |
| !! | CTTGTTGGATTTGTTGGATA+TGG | + | chr4_4:37879388-37879407 | None:intergenic | 35.0% |
| !! | TTCAAGCTTGTTGGATTTGT+TGG | + | chr4_4:37879394-37879413 | None:intergenic | 35.0% |
| CAATGAACATTCAAGCTTGT+TGG | + | chr4_4:37879403-37879422 | None:intergenic | 35.0% | |
| ! | GGATTATGGACACTCAATTT+TGG | - | chr4_4:37879445-37879464 | Msa0679700:intron | 35.0% |
| GGACTAAATGGGATAAATTG+TGG | + | chr4_4:37879496-37879515 | None:intergenic | 35.0% | |
| ACAGCATGATAATAAACACG+GGG | + | chr4_4:37879556-37879575 | None:intergenic | 35.0% | |
| GATTGCACATGGGAAATATA+CGG | - | chr4_4:37879604-37879623 | Msa0679700:CDS | 35.0% | |
| ACATGGGAAATATACGGAAA+TGG | - | chr4_4:37879610-37879629 | Msa0679700:exon | 35.0% | |
| TGAATCAAAATTGTCGTCCT+TGG | - | chr4_4:37879641-37879660 | Msa0679700:five_prime_UTR | 35.0% | |
| AACAGCTTCAAACTCGTGAT+AGG | - | chr4_4:37874369-37874388 | Msa0679700:CDS | 40.0% | |
| TGATGTGCTGAAAATGGATG+AGG | - | chr4_4:37874467-37874486 | Msa0679700:CDS | 40.0% | |
| TTAAGCATTATGGGCTCGTT+TGG | - | chr4_4:37874584-37874603 | Msa0679700:CDS | 40.0% | |
| GACAGTTTATGGGATTAAGC+CGG | - | chr4_4:37874898-37874917 | Msa0679700:intron | 40.0% | |
| TAGACACCAACACATGTTGT+TGG | - | chr4_4:37875082-37875101 | Msa0679700:intron | 40.0% | |
| CAACACATGTTGTTGGACAT+GGG | - | chr4_4:37875089-37875108 | Msa0679700:intron | 40.0% | |
| TATCCTTCACAAATTGGCCA+CGG | + | chr4_4:37875340-37875359 | None:intergenic | 40.0% | |
| ! | GTATTTCTGCCTTTCCATCA+TGG | - | chr4_4:37875373-37875392 | Msa0679700:intron | 40.0% |
| ! | ACACTGATTACAGAGAGTCA+TGG | - | chr4_4:37875409-37875428 | Msa0679700:intron | 40.0% |
| ! | TTATGATGGAACCCGAATCA+CGG | - | chr4_4:37875440-37875459 | Msa0679700:intron | 40.0% |
| ATGTCTCTATGACCGTGATT+CGG | + | chr4_4:37875455-37875474 | None:intergenic | 40.0% | |
| ATGACGTTGCGGCTAAAATT+GGG | - | chr4_4:37875483-37875502 | Msa0679700:intron | 40.0% | |
| AGTAAATGGCCATTCGAGTA+TGG | - | chr4_4:37875732-37875751 | Msa0679700:intron | 40.0% | |
| GTAAATGGCCATTCGAGTAT+GGG | - | chr4_4:37875733-37875752 | Msa0679700:intron | 40.0% | |
| TGACAACGGTCCATTTGATA+TGG | + | chr4_4:37875801-37875820 | None:intergenic | 40.0% | |
| AATGGACCGTTGTCATATAG+CGG | - | chr4_4:37875806-37875825 | Msa0679700:intron | 40.0% | |
| TCCCACATTGCTTAGAAAAG+TGG | - | chr4_4:37875862-37875881 | Msa0679700:intron | 40.0% | |
| !! | CTCCACTTTTCTAAGCAATG+TGG | + | chr4_4:37875867-37875886 | None:intergenic | 40.0% |
| CACATTGCTTAGAAAAGTGG+AGG | - | chr4_4:37875865-37875884 | Msa0679700:intron | 40.0% | |
| ! | CTGTCAAACAGTCGTCATTT+TGG | - | chr4_4:37876089-37876108 | Msa0679700:intron | 40.0% |
| !! | ATTTTGGCGTTATAGCGTTG+TGG | - | chr4_4:37876105-37876124 | Msa0679700:intron | 40.0% |
| ! | AGTATTTTCCAGCACATCTG+AGG | + | chr4_4:37876994-37877013 | None:intergenic | 40.0% |
| ! | CTTAAGGTTTTCATCGCAAG+TGG | - | chr4_4:37877012-37877031 | Msa0679700:intron | 40.0% |
| TGTCTGTTGTAGATGTTCCT+TGG | + | chr4_4:37877060-37877079 | None:intergenic | 40.0% | |
| TGCTGAACAAGGTCTTCTAA+TGG | - | chr4_4:37877413-37877432 | Msa0679700:intron | 40.0% | |
| ! | AGTGGTTTTTCTAATCCCTC+AGG | + | chr4_4:37877563-37877582 | None:intergenic | 40.0% |
| ! | ATGTCTATGACGGGGATATA+AGG | - | chr4_4:37877605-37877624 | Msa0679700:intron | 40.0% |
| CAAAGAGTGGAATGATAAGG+AGG | - | chr4_4:37877655-37877674 | Msa0679700:intron | 40.0% | |
| TTAGAATTGTGCTGGAGATG+AGG | + | chr4_4:37877694-37877713 | None:intergenic | 40.0% | |
| ! | GAGTCAACTTTTGTGGACAA+AGG | + | chr4_4:37878689-37878708 | None:intergenic | 40.0% |
| ! | AAATAGTTGACTCACCCGTA+AGG | - | chr4_4:37878716-37878735 | Msa0679700:intron | 40.0% |
| AGTTGAACTCATGACCTTAC+GGG | + | chr4_4:37878733-37878752 | None:intergenic | 40.0% | |
| GAGTTGAACTCATGACCTTA+CGG | + | chr4_4:37878734-37878753 | None:intergenic | 40.0% | |
| !! | TAATGAAGATGGCGGTTTTG+AGG | + | chr4_4:37879020-37879039 | None:intergenic | 40.0% |
| ! | AGGATTGTGGTAAGTCTTGT+AGG | - | chr4_4:37879166-37879185 | Msa0679700:intron | 40.0% |
| ! | AGGCATTGTGCATACAACAA+TGG | - | chr4_4:37879186-37879205 | Msa0679700:intron | 40.0% |
| CATTGTGCATACAACAATGG+CGG | - | chr4_4:37879189-37879208 | Msa0679700:intron | 40.0% | |
| AAGGCTATACCTATAGCTTC+TGG | - | chr4_4:37879325-37879344 | Msa0679700:intron | 40.0% | |
| TATACCTATAGCTTCTGGCA+AGG | - | chr4_4:37879330-37879349 | Msa0679700:intron | 40.0% | |
| ! | TAATAAACACGGGGGTTTTG+AGG | + | chr4_4:37879547-37879566 | None:intergenic | 40.0% |
| CAGCATGATAATAAACACGG+GGG | + | chr4_4:37879555-37879574 | None:intergenic | 40.0% | |
| ATCATGCTGTATACGACCAA+AGG | - | chr4_4:37879566-37879585 | Msa0679700:CDS | 40.0% | |
| CATAGCATCTGTCATACCTT+TGG | + | chr4_4:37879585-37879604 | None:intergenic | 40.0% | |
| ACAGATGCTATGATTGCACA+TGG | - | chr4_4:37879593-37879612 | Msa0679700:CDS | 40.0% | |
| CAGATGCTATGATTGCACAT+GGG | - | chr4_4:37879594-37879613 | Msa0679700:CDS | 40.0% | |
| ! | CATGTGTTGGTGTCTAACAC+TGG | + | chr4_4:37875078-37875097 | None:intergenic | 45.0% |
| CCATGTCCAACAACATGTGT+TGG | + | chr4_4:37875091-37875110 | None:intergenic | 45.0% | |
| CCAACACATGTTGTTGGACA+TGG | - | chr4_4:37875088-37875107 | Msa0679700:intron | 45.0% | |
| ! | CTGACACTTTTCATGGAAGG+CGG | + | chr4_4:37875120-37875139 | None:intergenic | 45.0% |
| !! | GCACTGACACTTTTCATGGA+AGG | + | chr4_4:37875123-37875142 | None:intergenic | 45.0% |
| !! | CAGAATTTTGACAACCACCG+TGG | - | chr4_4:37875320-37875339 | Msa0679700:intron | 45.0% |
| GGCCAATTTGTGAAGGATAG+CGG | - | chr4_4:37875341-37875360 | Msa0679700:intron | 45.0% | |
| GGAAAGGCAGAAATACACCA+TGG | + | chr4_4:37875369-37875388 | None:intergenic | 45.0% | |
| TGTCTCTATGACCGTGATTC+GGG | + | chr4_4:37875454-37875473 | None:intergenic | 45.0% | |
| CATGACGTTGCGGCTAAAAT+TGG | - | chr4_4:37875482-37875501 | Msa0679700:intron | 45.0% | |
| TGACGTTGCGGCTAAAATTG+GGG | - | chr4_4:37875484-37875503 | Msa0679700:intron | 45.0% | |
| GCAAGACGCACTAATAAGCT+TGG | + | chr4_4:37875667-37875686 | None:intergenic | 45.0% | |
| GCTTATTAGTGCGTCTTGCA+CGG | - | chr4_4:37875668-37875687 | Msa0679700:intron | 45.0% | |
| CTTATTAGTGCGTCTTGCAC+GGG | - | chr4_4:37875669-37875688 | Msa0679700:intron | 45.0% | |
| TGGTGTCCAACTCACTTGTA+TGG | - | chr4_4:37875949-37875968 | Msa0679700:intron | 45.0% | |
| CCTAGATGATCACCCACATT+GGG | + | chr4_4:37875985-37876004 | None:intergenic | 45.0% | |
| TGCGGAGTTTGAACAAATCC+CGG | - | chr4_4:37876443-37876462 | Msa0679700:intron | 45.0% | |
| TTCCTAGAGGGTTCTTCAAC+CGG | - | chr4_4:37877373-37877392 | Msa0679700:intron | 45.0% | |
| ! | ACGGGGATATAAGGTTAGCT+CGG | - | chr4_4:37877614-37877633 | Msa0679700:intron | 45.0% |
| TGGAATGATAAGGAGGTCGA+GGG | - | chr4_4:37877662-37877681 | Msa0679700:intron | 45.0% | |
| ! | TACTACTCGCATTTGAGGCT+AGG | - | chr4_4:37879254-37879273 | Msa0679700:intron | 45.0% |
| ! | ACTACTCGCATTTGAGGCTA+GGG | - | chr4_4:37879255-37879274 | Msa0679700:intron | 45.0% |
| GCTAGGGAGACTATAGCTAT+AGG | - | chr4_4:37879271-37879290 | Msa0679700:intron | 45.0% | |
| GTAACCTTGCCAGAAGCTAT+AGG | + | chr4_4:37879337-37879356 | None:intergenic | 45.0% | |
| CTTCTGGCAAGGTTACTGTT+TGG | - | chr4_4:37879341-37879360 | Msa0679700:intron | 45.0% | |
| !! | AAAATTCTATTATATATTAA+TGG | - | chr4_4:37878023-37878042 | Msa0679700:intron | 5.0% |
| !!! | AAAAAATTGTTTTTTTTTTA+GGG | + | chr4_4:37878562-37878581 | None:intergenic | 5.0% |
| !!! | TAAAAAATTGTTTTTTTTTT+AGG | + | chr4_4:37878563-37878582 | None:intergenic | 5.0% |
| !! | TATTAAAAAAAATGATAAAA+TGG | - | chr4_4:37878600-37878619 | Msa0679700:intron | 5.0% |
| CTTAAAGGGCCCGTTTGGAA+TGG | + | chr4_4:37874773-37874792 | None:intergenic | 50.0% | |
| CATTCCAAACGGGCCCTTTA+AGG | - | chr4_4:37874771-37874790 | Msa0679700:intron | 50.0% | |
| AAGTCCTTAAAGGGCCCGTT+TGG | + | chr4_4:37874778-37874797 | None:intergenic | 50.0% | |
| CGCCGCTATCCTTCACAAAT+TGG | + | chr4_4:37875346-37875365 | None:intergenic | 50.0% | |
| GAGCAGCCATACAAGTGAGT+TGG | + | chr4_4:37875958-37875977 | None:intergenic | 50.0% | |
| CTCACTTGTATGGCTGCTCT+TGG | - | chr4_4:37875959-37875978 | Msa0679700:intron | 50.0% | |
| CCCAATGTGGGTGATCATCT+AGG | - | chr4_4:37875982-37876001 | Msa0679700:intron | 50.0% | |
| GCCTAGATGATCACCCACAT+TGG | + | chr4_4:37875986-37876005 | None:intergenic | 50.0% | |
| ! | GTTATAGTGTTGGGTCGCGA+GGG | + | chr4_4:37876011-37876030 | None:intergenic | 50.0% |
| ! | TGTTATAGTGTTGGGTCGCG+AGG | + | chr4_4:37876012-37876031 | None:intergenic | 50.0% |
| GAGTTCGTTGAACAAGCCAG+AGG | - | chr4_4:37876958-37876977 | Msa0679700:CDS | 50.0% | |
| CTGAGGACACATGTTTCCTC+TGG | + | chr4_4:37876977-37876996 | None:intergenic | 50.0% | |
| ACATGTGTCCTCAGATGTGC+TGG | - | chr4_4:37876983-37877002 | Msa0679700:CDS | 50.0% | |
| TCCTAGAGGGTTCTTCAACC+GGG | - | chr4_4:37877374-37877393 | Msa0679700:intron | 50.0% | |
| ! | GGGATATAAGGTTAGCTCGG+TGG | - | chr4_4:37877617-37877636 | Msa0679700:intron | 50.0% |
| GTGGAATGATAAGGAGGTCG+AGG | - | chr4_4:37877661-37877680 | Msa0679700:intron | 50.0% | |
| CGGCATAGACACATCGACGT+TGG | - | chr4_4:37874996-37875015 | Msa0679700:intron | 55.0% | |
| TATCCACCATGGCCGAACCA+TGG | - | chr4_4:37875272-37875291 | Msa0679700:intron | 55.0% | |
| CCATGGCTGACACCATGGTT+CGG | + | chr4_4:37875287-37875306 | None:intergenic | 55.0% | |
| ! | AACCATGGTGTCAGCCATGG+TGG | - | chr4_4:37875287-37875306 | Msa0679700:intron | 55.0% |
| ATCCACCATGGCTGACACCA+TGG | + | chr4_4:37875292-37875311 | None:intergenic | 55.0% | |
| !! | GTGTCAGCCATGGTGGATTG+TGG | - | chr4_4:37875294-37875313 | Msa0679700:intron | 55.0% |
| !! | TCAGCCATGGTGGATTGTGG+TGG | - | chr4_4:37875297-37875316 | Msa0679700:intron | 55.0% |
| TCTGCCACCACAATCCACCA+TGG | + | chr4_4:37875304-37875323 | None:intergenic | 55.0% | |
| CCTTCACAAATTGGCCACGG+TGG | + | chr4_4:37875337-37875356 | None:intergenic | 55.0% | |
| CCACCGTGGCCAATTTGTGA+AGG | - | chr4_4:37875334-37875353 | Msa0679700:intron | 55.0% | |
| ACCCGGTTGAAGAACCCTCT+AGG | + | chr4_4:37877378-37877397 | None:intergenic | 55.0% | |
| ! | ACACCATGGTTCGGCCATGG+TGG | + | chr4_4:37875278-37875297 | None:intergenic | 60.0% |
| ! | CTGACACCATGGTTCGGCCA+TGG | + | chr4_4:37875281-37875300 | None:intergenic | 60.0% |
| ! | CCGAACCATGGTGTCAGCCA+TGG | - | chr4_4:37875284-37875303 | Msa0679700:intron | 60.0% |
| ! | TGTGAAGGATAGCGGCGCCA+TGG | - | chr4_4:37875349-37875368 | Msa0679700:intron | 60.0% |
| TGCGTCTTGCACGGGCTTGT+TGG | - | chr4_4:37875677-37875696 | Msa0679700:intron | 60.0% | |
| TGGCTGCTCTTGGCCCAATG+TGG | - | chr4_4:37875969-37875988 | Msa0679700:intron | 60.0% | |
| GGCTGCTCTTGGCCCAATGT+GGG | - | chr4_4:37875970-37875989 | Msa0679700:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 37874254 | 37879666 | 37874254 | ID=Msa0679700;Name=Msa0679700 |
| chr4_4 | mRNA | 37874254 | 37879666 | 37874254 | ID=Msa0679700-mRNA-1;Parent=Msa0679700;Name=Msa0679700-mRNA-1;_AED=0.33;_eAED=0.34;_QI=42|0.25|0.2|1|0|0.2|5|0|236 |
| chr4_4 | exon | 37874254 | 37874732 | 37874254 | ID=Msa0679700-mRNA-1:exon:8894;Parent=Msa0679700-mRNA-1 |
| chr4_4 | exon | 37874746 | 37874752 | 37874746 | ID=Msa0679700-mRNA-1:exon:8893;Parent=Msa0679700-mRNA-1 |
| chr4_4 | exon | 37876647 | 37876653 | 37876647 | ID=Msa0679700-mRNA-1:exon:8892;Parent=Msa0679700-mRNA-1 |
| chr4_4 | exon | 37876903 | 37877025 | 37876903 | ID=Msa0679700-mRNA-1:exon:8891;Parent=Msa0679700-mRNA-1 |
| chr4_4 | exon | 37879530 | 37879666 | 37879530 | ID=Msa0679700-mRNA-1:exon:8890;Parent=Msa0679700-mRNA-1 |
| chr4_4 | five_prime_UTR | 37879625 | 37879666 | 37879625 | ID=Msa0679700-mRNA-1:five_prime_utr;Parent=Msa0679700-mRNA-1 |
| chr4_4 | CDS | 37879530 | 37879624 | 37879530 | ID=Msa0679700-mRNA-1:cds;Parent=Msa0679700-mRNA-1 |
| chr4_4 | CDS | 37876903 | 37877025 | 37876903 | ID=Msa0679700-mRNA-1:cds;Parent=Msa0679700-mRNA-1 |
| chr4_4 | CDS | 37876647 | 37876653 | 37876647 | ID=Msa0679700-mRNA-1:cds;Parent=Msa0679700-mRNA-1 |
| chr4_4 | CDS | 37874746 | 37874752 | 37874746 | ID=Msa0679700-mRNA-1:cds;Parent=Msa0679700-mRNA-1 |
| chr4_4 | CDS | 37874254 | 37874732 | 37874254 | ID=Msa0679700-mRNA-1:cds;Parent=Msa0679700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
