AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565470 MtrunA17_Chr8g0380221 88.085 235 21 3 3 235 5 234 1.41e-136 383
Msa0565470 MtrunA17_Chr8g0374001 33.099 142 86 5 96 228 52 193 1.00e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565470 AT1G29390.1 46.522 230 114 3 7 235 5 226 4.30e-62 194
Msa0565470 AT1G29395.1 47.210 233 97 5 7 230 5 220 2.71e-61 192
Msa0565470 AT1G29390.2 58.940 151 61 1 86 235 33 183 3.46e-61 190
Msa0565470 AT4G37220.1 32.653 147 90 5 91 228 45 191 2.00e-14 70.1
Msa0565470 AT3G50830.1 39.316 117 66 4 113 224 72 188 1.73e-13 67.4

Find 62 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGTCCCCGTCCTCCTAAC+TGG 0.157384 4_1:-66316518 Msa0565470:five_prime_UTR
TTTATTGATTGCGGTGTATT+TGG 0.202554 4_1:-66313695 Msa0565470:CDS
AATGGAACAATAAATGATTT+TGG 0.211324 4_1:+66315191 None:intergenic
GTCAGCATTCTTGGCACTTC+TGG 0.222017 4_1:-66314907 Msa0565470:CDS
GTTGGAATGTTGATATTATT+TGG 0.278093 4_1:-66313505 Msa0565470:three_prime_UTR
GTAGAGATCCACTGAATATT+AGG 0.279652 4_1:+66316034 None:intergenic
CGTCTCTTCTTTCATATTCC+AGG 0.292869 4_1:-66314882 Msa0565470:intron
TTGATTACAGTGTTAATCTT+AGG 0.300217 4_1:-66316551 Msa0565470:five_prime_UTR
CTCATGAGGCTGTGAGATTA+AGG 0.311797 4_1:-66313839 Msa0565470:intron
ACCAAGAGTAACGCTATAAA+TGG 0.318021 4_1:+66313873 None:intergenic
AAAGCCGTTGGTGGTAGTTT+TGG 0.318747 4_1:+66316096 None:intergenic
TGATGATGGATCTGTTCTTC+TGG 0.366042 4_1:+66316306 None:intergenic
TGGTGTGTGGTCAGCATTCT+TGG 0.386108 4_1:-66314916 Msa0565470:CDS
CTGTTCTTCTGGTGCGGTTG+AGG 0.390332 4_1:+66316317 None:intergenic
AGATCATTCACTCGTCATTA+CGG 0.405431 4_1:-66316139 Msa0565470:CDS
CCTGAGGCATAGTGGATTGA+AGG 0.417360 4_1:+66316237 None:intergenic
GAAAGGATAAGGAGCATAAG+AGG 0.419085 4_1:+66316063 None:intergenic
GGGGCTTGCAAAGCAAATAA+TGG 0.425620 4_1:+66315173 None:intergenic
GAAGAAATGATATCATCATT+AGG 0.448312 4_1:-66316397 Msa0565470:exon
TTAGGAGTAGTGAAAGGATA+AGG 0.451051 4_1:+66316052 None:intergenic
TTAAATAATGGAGTTAGAAT+CGG 0.451444 4_1:-66313423 Msa0565470:three_prime_UTR
TTGTTGCTTCTCATCTGAGT+TGG 0.458098 4_1:-66313577 Msa0565470:exon
TGGACATACAGAGGTAGATA+TGG 0.467160 4_1:-66314936 Msa0565470:intron
ACATTTCTCAAGAACAAGCT+TGG 0.467961 4_1:-66313665 Msa0565470:CDS
GGGTCCCCGTCCTCCTAACT+GGG 0.479535 4_1:-66316517 Msa0565470:five_prime_UTR
GCCATTTATAGCGTTACTCT+TGG 0.480930 4_1:-66313874 Msa0565470:CDS
TTCAATTGTTTCCACCTTAG+CGG 0.484293 4_1:-66313623 Msa0565470:CDS
CTGAGCCCAGTTAGGAGGAC+GGG 0.498874 4_1:+66316512 None:intergenic
ATCGTTGACATACTTTATCC+AGG 0.500817 4_1:+66315136 None:intergenic
GTAGTTCGTGCATTTACAGT+TGG 0.502281 4_1:+66316352 None:intergenic
CCTTCAATCCACTATGCCTC+AGG 0.515434 4_1:-66316237 Msa0565470:intron
CGTGATTTCTTTATTGATTG+CGG 0.531142 4_1:-66313704 Msa0565470:CDS
GTTTCCACCTTAGCGGTCAT+CGG 0.533114 4_1:-66313616 Msa0565470:CDS
CGCAATCAATAAAGAAATCA+CGG 0.554346 4_1:+66313705 None:intergenic
AGAACCCTCATGTCAGAGGT+TGG 0.555418 4_1:+66313321 None:intergenic
TGACTCTGAGCCCAGTTAGG+AGG 0.563143 4_1:+66316507 None:intergenic
TGTACTTACCTGAGGCATAG+TGG 0.566472 4_1:+66316229 None:intergenic
AACTCCAAAACTACCACCAA+CGG 0.569021 4_1:-66316100 Msa0565470:CDS
TAATCTTAGGAGTTTGAGAG+TGG 0.576588 4_1:-66316538 Msa0565470:five_prime_UTR
ATGGATCTGTTCTTCTGGTG+CGG 0.578225 4_1:+66316311 None:intergenic
AACTCCAACCTCTGACATGA+GGG 0.578895 4_1:-66313325 Msa0565470:three_prime_UTR
TCACTACTCCTAATATTCAG+TGG 0.580865 4_1:-66316042 Msa0565470:CDS
TTTGCCAGGGACACAAAAGA+AGG 0.594762 4_1:-66313730 Msa0565470:intron
AAGGTGCGAGTGCGAGTGCG+AGG 0.599156 4_1:+66316256 None:intergenic
GATACCGATGACCGCTAAGG+TGG 0.607165 4_1:+66313612 None:intergenic
GCAAAGAACCCTCATGTCAG+AGG 0.611423 4_1:+66313317 None:intergenic
CTTAATCTCACAGCCTCATG+AGG 0.615359 4_1:+66313840 None:intergenic
GGAAAACACACGAAAGCCGT+TGG 0.617683 4_1:+66316084 None:intergenic
TTGGAGAAATCATTTGACCA+AGG 0.622670 4_1:-66313646 Msa0565470:CDS
GAACTCCAACCTCTGACATG+AGG 0.624120 4_1:-66313326 Msa0565470:three_prime_UTR
AATCTTAGGAGTTTGAGAGT+GGG 0.628845 4_1:-66316537 Msa0565470:five_prime_UTR
AAACACACGAAAGCCGTTGG+TGG 0.629663 4_1:+66316087 None:intergenic
CTGGAATATGAAAGAAGAGA+CGG 0.630891 4_1:+66314883 None:intergenic
AGTGATACCGATGACCGCTA+AGG 0.637419 4_1:+66313609 None:intergenic
TGAATATTAGGAGTAGTGAA+AGG 0.638291 4_1:+66316046 None:intergenic
TCTGAGCCCAGTTAGGAGGA+CGG 0.639456 4_1:+66316511 None:intergenic
AACTCAGATGAGAAGCAACA+AGG 0.646149 4_1:+66313579 None:intergenic
AGGTGGAAACAATTGAACCT+TGG 0.646271 4_1:+66313629 None:intergenic
TGAGCCCAGTTAGGAGGACG+GGG 0.667944 4_1:+66316513 None:intergenic
GGTGATTGTAGCTCCTCATG+AGG 0.668319 4_1:-66313853 Msa0565470:CDS
AGGTGCGAGTGCGAGTGCGA+GGG 0.690132 4_1:+66316257 None:intergenic
ACAGAGGTAGATATGGTGTG+TGG 0.705598 4_1:-66314929 Msa0565470:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTAGATCAATAAA+AGG + chr4_1:66314860-66314879 None:intergenic 10.0%
!!! TATTCTTTTTGAATATTAAT+TGG - chr4_1:66315874-66315893 Msa0565470:intron 10.0%
!! TAAATAAAAATAATACATGT+TGG - chr4_1:66316301-66316320 Msa0565470:CDS 10.0%
!!! GTTCATATTATATCAATTTT+CGG - chr4_1:66313918-66313937 Msa0565470:intron 15.0%
!!! AAGTATGTAATATTTTGAAA+CGG + chr4_1:66314039-66314058 None:intergenic 15.0%
!!! TCTAATTATTTTACACAAAT+TGG - chr4_1:66314868-66314887 Msa0565470:intron 15.0%
!!! AAGAAGATTTAGATTTTAAA+TGG + chr4_1:66315226-66315245 None:intergenic 15.0%
!! TAAAATCTAAATCTTCTTAA+TGG - chr4_1:66315228-66315247 Msa0565470:intron 15.0%
!!! AGAATATAATTATGGATTAT+TGG + chr4_1:66315447-66315466 None:intergenic 15.0%
!! TAAACATGAGAATATAATTA+TGG + chr4_1:66315455-66315474 None:intergenic 15.0%
!!! TTTTTTCTCATACAAAAATT+CGG - chr4_1:66315518-66315537 Msa0565470:intron 15.0%
!! TGTAAACAAATTCTTAAAAT+TGG - chr4_1:66315544-66315563 Msa0565470:intron 15.0%
!! TATTCAAAAAGAATAAAGAA+CGG + chr4_1:66315869-66315888 None:intergenic 15.0%
!! AAAAAAGATAAAATTTCTTC+CGG - chr4_1:66315897-66315916 Msa0565470:intron 15.0%
!!! CTTTTTACTTACTTAAATAA+TGG - chr4_1:66316389-66316408 Msa0565470:CDS 15.0%
!! GTTAATGAATGAAATGTTAT+CGG - chr4_1:66313960-66313979 Msa0565470:intron 20.0%
!!! GTATATCTTTTGTATTCTTT+TGG - chr4_1:66314503-66314522 Msa0565470:intron 20.0%
!! ATGAATATTCAAAATCTTGT+AGG - chr4_1:66314580-66314599 Msa0565470:intron 20.0%
!! TGAATATTCAAAATCTTGTA+GGG - chr4_1:66314581-66314600 Msa0565470:intron 20.0%
!!! AATGGAACAATAAATGATTT+TGG + chr4_1:66314636-66314655 None:intergenic 20.0%
!! AAGAGAATAACAATTATTCT+TGG + chr4_1:66314818-66314837 None:intergenic 20.0%
!! TATTGTTTACTTCTAACTAT+TGG - chr4_1:66315258-66315277 Msa0565470:intron 20.0%
!! ATTTCTTAGAAAGAAATGTA+GGG + chr4_1:66315395-66315414 None:intergenic 20.0%
!! AATTTCTTAGAAAGAAATGT+AGG + chr4_1:66315396-66315415 None:intergenic 20.0%
!! TTTGTATGAGAAAAAATGTT+TGG + chr4_1:66315514-66315533 None:intergenic 20.0%
!! CAAATTGAAAAGGAAATAAA+CGG + chr4_1:66315646-66315665 None:intergenic 20.0%
!!! TTAAATAATGGAGTTAGAAT+CGG - chr4_1:66316401-66316420 Msa0565470:exon 20.0%
! TTGATTACAGTGTTAATCTT+AGG - chr4_1:66313273-66313292 Msa0565470:three_prime_UTR 25.0%
! AGAGTCAATGAATCAAAAAT+TGG - chr4_1:66313342-66313361 Msa0565470:three_prime_UTR 25.0%
! GAAGAAATGATATCATCATT+AGG - chr4_1:66313427-66313446 Msa0565470:three_prime_UTR 25.0%
! ATGATAAGAGAGAGAATAAA+TGG + chr4_1:66313646-66313665 None:intergenic 25.0%
! ATTGAAATATGAAACTGCAA+TGG + chr4_1:66313990-66314009 None:intergenic 25.0%
!!! TTTGATTTTGAACAACTGAT+TGG - chr4_1:66314122-66314141 Msa0565470:intron 25.0%
!! TTGATTTTGAACAACTGATT+GGG - chr4_1:66314123-66314142 Msa0565470:intron 25.0%
! ATCAGATATCCAATCAATAT+TGG - chr4_1:66314190-66314209 Msa0565470:intron 25.0%
! ATGATTCATCCAATATTGAT+TGG + chr4_1:66314202-66314221 None:intergenic 25.0%
!! AAATGCGATTCATTAGATTT+TGG - chr4_1:66314259-66314278 Msa0565470:intron 25.0%
! CAAGTTACATAGATAAATAG+AGG + chr4_1:66314377-66314396 None:intergenic 25.0%
! AATAACTGAACAATGAAAGA+CGG + chr4_1:66314541-66314560 None:intergenic 25.0%
!! GTTTTCTTGTTCAGTTTATA+TGG - chr4_1:66314722-66314741 Msa0565470:intron 25.0%
!!! AAAATCTACTTTGAAACAGT+TGG + chr4_1:66314748-66314767 None:intergenic 25.0%
! ATGAAATTTAGGAATCTTGA+AGG - chr4_1:66314991-66315010 Msa0565470:intron 25.0%
! TGAAATTTAGGAATCTTGAA+GGG - chr4_1:66314992-66315011 Msa0565470:intron 25.0%
!!! GAAAACCAACATTTTGTTTT+AGG - chr4_1:66315071-66315090 Msa0565470:intron 25.0%
! TCAATAGTAACACATAGTTT+GGG + chr4_1:66315687-66315706 None:intergenic 25.0%
! TGTGGAGTGTATTAATATAA+GGG - chr4_1:66315719-66315738 Msa0565470:intron 25.0%
! ATATTAATACACTCCACATA+TGG + chr4_1:66315797-66315816 None:intergenic 25.0%
! ATGTGGAGTGTATTAATATA+AGG - chr4_1:66315798-66315817 Msa0565470:intron 25.0%
! TGTGGAGTGTATTAATATAA+GGG - chr4_1:66315719-66315738 Msa0565470:intron 25.0%
!! GTAAGCAAATTCATGTTTTT+GGG - chr4_1:66316007-66316026 Msa0565470:intron 25.0%
!!! TAAGCAAATTCATGTTTTTG+GGG - chr4_1:66316008-66316027 Msa0565470:intron 25.0%
! GTTGGAATGTTGATATTATT+TGG - chr4_1:66316319-66316338 Msa0565470:CDS 25.0%
TCTCTCTTATCATATTTCCA+TGG - chr4_1:66313653-66313672 Msa0565470:CDS 30.0%
! AATGATCTGAAATGAAACCA+TGG + chr4_1:66313673-66313692 None:intergenic 30.0%
TGAATATTAGGAGTAGTGAA+AGG + chr4_1:66313781-66313800 None:intergenic 30.0%
CATTAACACAACTAATCGTA+TGG + chr4_1:66313947-66313966 None:intergenic 30.0%
TCAAAAAGCTTCAGTTGAAA+GGG + chr4_1:66314107-66314126 None:intergenic 30.0%
ATCAAAAAGCTTCAGTTGAA+AGG + chr4_1:66314108-66314127 None:intergenic 30.0%
TGACTATCTCGTTAAGAATT+TGG + chr4_1:66314317-66314336 None:intergenic 30.0%
CTTGTAAGAGTGATTAATCA+TGG - chr4_1:66314393-66314412 Msa0565470:intron 30.0%
TGCTGGTAGTAATCTTATTA+TGG - chr4_1:66314466-66314485 Msa0565470:intron 30.0%
TCATCAGCACATAACAAATT+TGG + chr4_1:66314564-66314583 None:intergenic 30.0%
!! ATCTTGTAGGGTTTTAATAC+TGG - chr4_1:66314593-66314612 Msa0565470:intron 30.0%
! TGTTTGCTCAACAAATTTTG+TGG - chr4_1:66314772-66314791 Msa0565470:intron 30.0%
GATGTATAAGAGAATATACC+TGG + chr4_1:66314963-66314982 None:intergenic 30.0%
ATCATATGCGCATGAAATTT+AGG - chr4_1:66314980-66314999 Msa0565470:intron 30.0%
GAAATTTAGGAATCTTGAAG+GGG - chr4_1:66314993-66315012 Msa0565470:intron 30.0%
! GTTTTCACCACTTTCAATAA+AGG + chr4_1:66315057-66315076 None:intergenic 30.0%
AGGTTCCTAAAACAAAATGT+TGG + chr4_1:66315079-66315098 None:intergenic 30.0%
!!! ATTTTGTTTTAGGAACCTCA+GGG - chr4_1:66315081-66315100 Msa0565470:intron 30.0%
GAAAAGTAAAAACTGCAAAG+TGG - chr4_1:66315133-66315152 Msa0565470:intron 30.0%
TGTAATGAGAAAACTTGTAC+AGG + chr4_1:66315314-66315333 None:intergenic 30.0%
! AAGAGAGTAGAATTTTGTCT+TGG + chr4_1:66315353-66315372 None:intergenic 30.0%
ATTGAAAAGGAAATAAACGG+AGG + chr4_1:66315643-66315662 None:intergenic 30.0%
! TTCCTTTTCAATTTGTACGA+TGG - chr4_1:66315651-66315670 Msa0565470:intron 30.0%
ATCCATCGTACAAATTGAAA+AGG + chr4_1:66315656-66315675 None:intergenic 30.0%
! AACACATAGTTTGGGTATTT+TGG + chr4_1:66315679-66315698 None:intergenic 30.0%
GTCAATAGTAACACATAGTT+TGG + chr4_1:66315688-66315707 None:intergenic 30.0%
ATATTAATACACTCCACAGT+TGG + chr4_1:66315717-66315736 None:intergenic 30.0%
CTGTGGAGTGTATTAATATA+AGG - chr4_1:66315718-66315737 Msa0565470:intron 30.0%
GTGGAGTGTATTAATATAAG+GGG - chr4_1:66315720-66315739 Msa0565470:intron 30.0%
! GGTAAGCAAATTCATGTTTT+TGG - chr4_1:66316006-66316025 Msa0565470:intron 30.0%
! TAAATAGGGTAAGTTGACAA+CGG + chr4_1:66316042-66316061 None:intergenic 30.0%
CGCAATCAATAAAGAAATCA+CGG + chr4_1:66316122-66316141 None:intergenic 30.0%
! CGTGATTTCTTTATTGATTG+CGG - chr4_1:66316120-66316139 Msa0565470:CDS 30.0%
! TTTATTGATTGCGGTGTATT+TGG - chr4_1:66316129-66316148 Msa0565470:CDS 30.0%
TAATCTTAGGAGTTTGAGAG+TGG - chr4_1:66313286-66313305 Msa0565470:three_prime_UTR 35.0%
AATCTTAGGAGTTTGAGAGT+GGG - chr4_1:66313287-66313306 Msa0565470:three_prime_UTR 35.0%
AGAATGTATGTACTTACCTG+AGG + chr4_1:66313606-66313625 None:intergenic 35.0%
AGATCATTCACTCGTCATTA+CGG - chr4_1:66313685-66313704 Msa0565470:CDS 35.0%
TTAGGAGTAGTGAAAGGATA+AGG + chr4_1:66313775-66313794 None:intergenic 35.0%
TCACTACTCCTAATATTCAG+TGG - chr4_1:66313782-66313801 Msa0565470:intron 35.0%
GTAGAGATCCACTGAATATT+AGG + chr4_1:66313793-66313812 None:intergenic 35.0%
!! AAAGGGATCATGAGAGTATT+TGG + chr4_1:66314090-66314109 None:intergenic 35.0%
! AACTGAAATACCTGTTTTGC+TGG - chr4_1:66314449-66314468 Msa0565470:intron 35.0%
AAGATTACTACCAGCAAAAC+AGG + chr4_1:66314462-66314481 None:intergenic 35.0%
!! TAGGGTTTTAATACTGGCAA+AGG - chr4_1:66314599-66314618 Msa0565470:intron 35.0%
!! AGGGTTTTAATACTGGCAAA+GGG - chr4_1:66314600-66314619 Msa0565470:intron 35.0%
ATCGTTGACATACTTTATCC+AGG + chr4_1:66314691-66314710 None:intergenic 35.0%
AAAAGGTAAAACAGCACTCT+TGG + chr4_1:66314843-66314862 None:intergenic 35.0%
TACACAAATTGGACATACAG+AGG - chr4_1:66314879-66314898 Msa0565470:intron 35.0%
CTGGAATATGAAAGAAGAGA+CGG + chr4_1:66314944-66314963 None:intergenic 35.0%
CACTTTCAATAAAGGCCATA+TGG + chr4_1:66315049-66315068 None:intergenic 35.0%
CATATGGCCTTTATTGAAAG+TGG - chr4_1:66315047-66315066 Msa0565470:intron 35.0%
!!! CATTTTGTTTTAGGAACCTC+AGG - chr4_1:66315080-66315099 Msa0565470:intron 35.0%
! TAGCATAAGCCTTTTATGCT+AGG - chr4_1:66315159-66315178 Msa0565470:CDS 35.0%
! TCTACTCTCTTTTCCACAAT+AGG - chr4_1:66315362-66315381 Msa0565470:intron 35.0%
!!! AGGAGTGTTTCAAGTGTTTT+AGG + chr4_1:66315585-66315604 None:intergenic 35.0%
TAAAACACTTGAAACACTCC+TGG - chr4_1:66315584-66315603 Msa0565470:intron 35.0%
GTATTAATATAAGGGCAACC+CGG - chr4_1:66315727-66315746 Msa0565470:intron 35.0%
TAATACACTCCACATATGGT+GGG + chr4_1:66315793-66315812 None:intergenic 35.0%
TTAATACACTCCACATATGG+TGG + chr4_1:66315794-66315813 None:intergenic 35.0%
ATTAATATAAGGGGCAACTG+TGG - chr4_1:66315809-66315828 Msa0565470:intron 35.0%
ACCTGGAATCAAAGAATATC+CGG + chr4_1:66315919-66315938 None:intergenic 35.0%
ACCAAGAGTAACGCTATAAA+TGG + chr4_1:66315954-66315973 None:intergenic 35.0%
ACATTTCTCAAGAACAAGCT+TGG - chr4_1:66316159-66316178 Msa0565470:intron 35.0%
TTGGAGAAATCATTTGACCA+AGG - chr4_1:66316178-66316197 Msa0565470:intron 35.0%
TTCAATTGTTTCCACCTTAG+CGG - chr4_1:66316201-66316220 Msa0565470:intron 35.0%
GTAGTTCGTGCATTTACAGT+TGG + chr4_1:66313475-66313494 None:intergenic 40.0%
!! TGATGATGGATCTGTTCTTC+TGG + chr4_1:66313521-66313540 None:intergenic 40.0%
! AGCGATGATGATGATGATGA+TGG + chr4_1:66313535-66313554 None:intergenic 40.0%
!!! GGTGGTAGTTTTGGAGTTAT+CGG + chr4_1:66313722-66313741 None:intergenic 40.0%
AACTCCAAAACTACCACCAA+CGG - chr4_1:66313724-66313743 Msa0565470:CDS 40.0%
! GAAAGGATAAGGAGCATAAG+AGG + chr4_1:66313764-66313783 None:intergenic 40.0%
TGCAAAATTCCTCAACTGCA+GGG + chr4_1:66314152-66314171 None:intergenic 40.0%
ATGCAAAATTCCTCAACTGC+AGG + chr4_1:66314153-66314172 None:intergenic 40.0%
! GGATATCTGATTTGTCTGCA+AGG + chr4_1:66314181-66314200 None:intergenic 40.0%
TGGACATACAGAGGTAGATA+TGG - chr4_1:66314888-66314907 Msa0565470:CDS 40.0%
CGTCTCTTCTTTCATATTCC+AGG - chr4_1:66314942-66314961 Msa0565470:intron 40.0%
GAATCTTGAAGGGGTAACAA+TGG - chr4_1:66315002-66315021 Msa0565470:intron 40.0%
TAGACCTCAAGAACACCATA+TGG - chr4_1:66315031-66315050 Msa0565470:intron 40.0%
TAGAATCAATATGTGCCCTG+AGG + chr4_1:66315099-66315118 None:intergenic 40.0%
! ATAAGCCTTTTATGCTAGGC+AGG - chr4_1:66315163-66315182 Msa0565470:CDS 40.0%
! TAAGCCTTTTATGCTAGGCA+GGG - chr4_1:66315164-66315183 Msa0565470:CDS 40.0%
TAATCCCTGCCTAGCATAAA+AGG + chr4_1:66315171-66315190 None:intergenic 40.0%
! AGTGAAAAGAGTGCATCAGA+TGG + chr4_1:66315287-66315306 None:intergenic 40.0%
TCCGGATATTCTTTGATTCC+AGG - chr4_1:66315915-66315934 Msa0565470:intron 40.0%
GCCATTTATAGCGTTACTCT+TGG - chr4_1:66315950-66315969 Msa0565470:intron 40.0%
! GTAAGTTGACAACGGTTCAA+AGG + chr4_1:66316034-66316053 None:intergenic 40.0%
ACATCGTTATTCTCTTTGCC+AGG - chr4_1:66316080-66316099 Msa0565470:CDS 40.0%
CATCGTTATTCTCTTTGCCA+GGG - chr4_1:66316081-66316100 Msa0565470:CDS 40.0%
AGGTGGAAACAATTGAACCT+TGG + chr4_1:66316198-66316217 None:intergenic 40.0%
AACTCAGATGAGAAGCAACA+AGG + chr4_1:66316248-66316267 None:intergenic 40.0%
! TTGTTGCTTCTCATCTGAGT+TGG - chr4_1:66316247-66316266 Msa0565470:CDS 40.0%
!! TTTTGACTCTGAGCCCAGTT+AGG + chr4_1:66313323-66313342 None:intergenic 45.0%
ATGGATCTGTTCTTCTGGTG+CGG + chr4_1:66313516-66313535 None:intergenic 45.0%
TGTACTTACCTGAGGCATAG+TGG + chr4_1:66313598-66313617 None:intergenic 45.0%
!!! AAAGCCGTTGGTGGTAGTTT+TGG + chr4_1:66313731-66313750 None:intergenic 45.0%
GGTTGAAGTTGTACAGTCTG+TGG - chr4_1:66314280-66314299 Msa0565470:intron 45.0%
GGGGCTTGCAAAGCAAATAA+TGG + chr4_1:66314654-66314673 None:intergenic 45.0%
ACAGAGGTAGATATGGTGTG+TGG - chr4_1:66314895-66314914 Msa0565470:CDS 45.0%
AAGGCCATATGGTGTTCTTG+AGG + chr4_1:66315038-66315057 None:intergenic 45.0%
TCAAGTGAGATGGATGAACC+AGG + chr4_1:66315605-66315624 None:intergenic 45.0%
TCCATCTCACTTGATTCCCA+TGG - chr4_1:66315611-66315630 Msa0565470:intron 45.0%
ACCATGGGAATCAAGTGAGA+TGG + chr4_1:66315615-66315634 None:intergenic 45.0%
! TAAACGGAGGTGCAAACCAT+GGG + chr4_1:66315630-66315649 None:intergenic 45.0%
! ATAAACGGAGGTGCAAACCA+TGG + chr4_1:66315631-66315650 None:intergenic 45.0%
! TATTGACTGCAAGCCAACTG+TGG - chr4_1:66315701-66315720 Msa0565470:intron 45.0%
AATGGCAACTCAAGTTCACC+TGG + chr4_1:66315936-66315955 None:intergenic 45.0%
CTTAATCTCACAGCCTCATG+AGG + chr4_1:66315987-66316006 None:intergenic 45.0%
CTCATGAGGCTGTGAGATTA+AGG - chr4_1:66315985-66316004 Msa0565470:intron 45.0%
TTTGCCAGGGACACAAAAGA+AGG - chr4_1:66316094-66316113 Msa0565470:CDS 45.0%
AACTCCAACCTCTGACATGA+GGG - chr4_1:66316499-66316518 Msa0565470:five_prime_UTR 45.0%
!!! GTTTTTTATTTTAATAAATA+GGG + chr4_1:66316056-66316075 None:intergenic 5.0%
!!! AGTTTTTTATTTTAATAAAT+AGG + chr4_1:66316057-66316076 None:intergenic 5.0%
!! CCTGAGGCATAGTGGATTGA+AGG + chr4_1:66313590-66313609 None:intergenic 50.0%
CCTTCAATCCACTATGCCTC+AGG - chr4_1:66313587-66313606 Msa0565470:CDS 50.0%
AAACACACGAAAGCCGTTGG+TGG + chr4_1:66313740-66313759 None:intergenic 50.0%
GGAAAACACACGAAAGCCGT+TGG + chr4_1:66313743-66313762 None:intergenic 50.0%
ATTGGGATTCCCTGCAGTTG+AGG - chr4_1:66314140-66314159 Msa0565470:intron 50.0%
TCCAGGCAAAAACAGCTGCA+GGG + chr4_1:66314674-66314693 None:intergenic 50.0%
ATCCAGGCAAAAACAGCTGC+AGG + chr4_1:66314675-66314694 None:intergenic 50.0%
TGGTGTGTGGTCAGCATTCT+TGG - chr4_1:66314908-66314927 Msa0565470:CDS 50.0%
GTCAGCATTCTTGGCACTTC+TGG - chr4_1:66314917-66314936 Msa0565470:CDS 50.0%
GTAGGGTGACACACCTATTG+TGG + chr4_1:66315378-66315397 None:intergenic 50.0%
! ATGTGGGAGCTTTAGTGCAC+CGG + chr4_1:66315749-66315768 None:intergenic 50.0%
ACTAAAGCTCCCACATACGC+AGG - chr4_1:66315753-66315772 Msa0565470:intron 50.0%
CTAAAGCTCCCACATACGCA+GGG - chr4_1:66315754-66315773 Msa0565470:intron 50.0%
GGTGATTGTAGCTCCTCATG+AGG - chr4_1:66315971-66315990 Msa0565470:intron 50.0%
GTTTCCACCTTAGCGGTCAT+CGG - chr4_1:66316208-66316227 Msa0565470:intron 50.0%
AGTGATACCGATGACCGCTA+AGG + chr4_1:66316218-66316237 None:intergenic 50.0%
GAACTCCAACCTCTGACATG+AGG - chr4_1:66316498-66316517 Msa0565470:five_prime_UTR 50.0%
AGAACCCTCATGTCAGAGGT+TGG + chr4_1:66316506-66316525 None:intergenic 50.0%
GCAAAGAACCCTCATGTCAG+AGG + chr4_1:66316510-66316529 None:intergenic 50.0%
TCTGAGCCCAGTTAGGAGGA+CGG + chr4_1:66313316-66313335 None:intergenic 55.0%
TGACTCTGAGCCCAGTTAGG+AGG + chr4_1:66313320-66313339 None:intergenic 55.0%
CTGTTCTTCTGGTGCGGTTG+AGG + chr4_1:66313510-66313529 None:intergenic 55.0%
CCAGGCAAAAACAGCTGCAG+GGG + chr4_1:66314673-66314692 None:intergenic 55.0%
! TGTGGGAGCTTTAGTGCACC+GGG + chr4_1:66315748-66315767 None:intergenic 55.0%
! CATATGGTGGGACCTCTTCC+CGG + chr4_1:66315781-66315800 None:intergenic 55.0%
GGAAGAGGTCCCACCATATG+TGG - chr4_1:66315781-66315800 Msa0565470:intron 55.0%
! GGCACCTTCTTTTGTGTCCC+TGG + chr4_1:66316101-66316120 None:intergenic 55.0%
GATACCGATGACCGCTAAGG+TGG + chr4_1:66316215-66316234 None:intergenic 55.0%
TGAGCCCAGTTAGGAGGACG+GGG + chr4_1:66313314-66313333 None:intergenic 60.0%
CTGAGCCCAGTTAGGAGGAC+GGG + chr4_1:66313315-66313334 None:intergenic 60.0%
!!! CCCCTGCAGCTGTTTTTGCC+TGG - chr4_1:66314670-66314689 Msa0565470:intron 60.0%
TTCCCGGACCCTGCGTATGT+GGG + chr4_1:66315765-66315784 None:intergenic 60.0%
TGGGTCCCCGTCCTCCTAAC+TGG - chr4_1:66313306-66313325 Msa0565470:three_prime_UTR 65.0%
GGGTCCCCGTCCTCCTAACT+GGG - chr4_1:66313307-66313326 Msa0565470:three_prime_UTR 65.0%
AGGTGCGAGTGCGAGTGCGA+GGG + chr4_1:66313570-66313589 None:intergenic 65.0%
AAGGTGCGAGTGCGAGTGCG+AGG + chr4_1:66313571-66313590 None:intergenic 65.0%
GCTCCCACATACGCAGGGTC+CGG - chr4_1:66315759-66315778 Msa0565470:intron 65.0%
CTCCCACATACGCAGGGTCC+GGG - chr4_1:66315760-66315779 Msa0565470:intron 65.0%
CTTCCCGGACCCTGCGTATG+TGG + chr4_1:66315766-66315785 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+AGG - chr4_1:66315766-66315785 Msa0565470:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66313272 66316574 66313272 ID=Msa0565470;Name=Msa0565470
chr4_1 mRNA 66313272 66316574 66313272 ID=Msa0565470-mRNA-1;Parent=Msa0565470;Name=Msa0565470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=161|1|1|1|1|1|6|310|235
chr4_1 exon 66313272 66313744 66313272 ID=Msa0565470-mRNA-1:exon:21519;Parent=Msa0565470-mRNA-1
chr4_1 exon 66313840 66313909 66313840 ID=Msa0565470-mRNA-1:exon:21518;Parent=Msa0565470-mRNA-1
chr4_1 exon 66314883 66314947 66314883 ID=Msa0565470-mRNA-1:exon:21517;Parent=Msa0565470-mRNA-1
chr4_1 exon 66315149 66315244 66315149 ID=Msa0565470-mRNA-1:exon:21516;Parent=Msa0565470-mRNA-1
chr4_1 exon 66316022 66316159 66316022 ID=Msa0565470-mRNA-1:exon:21515;Parent=Msa0565470-mRNA-1
chr4_1 exon 66316238 66316574 66316238 ID=Msa0565470-mRNA-1:exon:21514;Parent=Msa0565470-mRNA-1
chr4_1 five_prime_UTR 66316414 66316574 66316414 ID=Msa0565470-mRNA-1:five_prime_utr;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66316238 66316413 66316238 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66316022 66316159 66316022 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66315149 66315244 66315149 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66314883 66314947 66314883 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66313840 66313909 66313840 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 CDS 66313582 66313744 66313582 ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1
chr4_1 three_prime_UTR 66313272 66313581 66313272 ID=Msa0565470-mRNA-1:three_prime_utr;Parent=Msa0565470-mRNA-1
Gene Sequence

>Msa0565470

ATGATATCATCATTAGGCTGTGTGTTATCATCAACAACTCCAACTGTAAATGCACGAACTACTACTTTCTCTCTCCTCAACCGCACCAGAAGAACAGATCCATCATCATCATCATCATCGCTCTCTTTCTCTCACCCTCGCACTCGCACTCGCACCTTCAATCCACTATGCCTCAGATCATTCACTCGTCATTACGGAATCAAAATCGCCGATAACTCCAAAACTACCACCAACGGCTTTCGTGTGTTTTCCTCTTATGCTCCTTATCCTTTCACTACTCCTAATATTCAGTGGATCTCTACTGTTTCTGCTCTGGTTTTAATACTGGCAAAGGGCACTGCTGTACCAAAATCATTTATTGTTCCATTATTTGCTTTGCAAGCCCCTGCAGCTGTTTTTGCCTGGATAAAAGGTAGATATGGTGTGTGGTCAGCATTCTTGGCACTTCTGGTCCGTCTCTTCTTTCATATTCCAGGTGAACTTGAGTTGCCATTTATAGCGTTACTCTTGGTGATTGTAGCTCCTCATGAGGCTGTGAGATTAAGGGACACAAAAGAAGGTGCCGTGATTTCTTTATTGATTGCGGTGTATTTGGCTTTTCAACATTTCTCAAGAACAAGCTTGGAGAAATCATTTGACCAAGGTTCAATTGTTTCCACCTTAGCGGTCATCGGTATCACTGTTGCATCCTTGTTGCTTCTCATCTGA

Protein sequence

>Msa0565470

MISSLGCVLSSTTPTVNARTTTFSLLNRTRRTDPSSSSSSLSFSHPRTRTRTFNPLCLRSFTRHYGIKIADNSKTTTNGFRVFSSYAPYPFTTPNIQWISTVSALVLILAKGTAVPKSFIVPLFALQAPAAVFAWIKGRYGVWSAFLALLVRLFFHIPGELELPFIALLLVIVAPHEAVRLRDTKEGAVISLLIAVYLAFQHFSRTSLEKSFDQGSIVSTLAVIGITVASLLLLI*