Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565470 | XP_003629898.1 | 88.085 | 235 | 21 | 3 | 3 | 235 | 5 | 234 | 1.53e-132 | 383 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565470 | sp|F4I1G5|CRIM2_ARATH | 46.522 | 230 | 114 | 3 | 7 | 235 | 5 | 226 | 4.23e-61 | 194 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565470 | G7L817 | 88.085 | 235 | 21 | 3 | 3 | 235 | 5 | 234 | 7.31e-133 | 383 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0039780 | Msa0565470 | 0.816012 | 6.885023e-52 | -8.615850e-47 |
Msa0087370 | Msa0565470 | 0.818167 | 2.257400e-52 | -8.615850e-47 |
Msa0089470 | Msa0565470 | 0.814262 | 1.685335e-51 | -8.615850e-47 |
Msa0090350 | Msa0565470 | 0.825493 | 4.547940e-54 | -8.615850e-47 |
Msa0091220 | Msa0565470 | 0.811036 | 8.557263e-51 | -8.615850e-47 |
Msa0109260 | Msa0565470 | 0.824771 | 6.738870e-54 | -8.615850e-47 |
Msa0133450 | Msa0565470 | 0.814429 | 1.547451e-51 | -8.615850e-47 |
Msa0134120 | Msa0565470 | 0.827179 | 1.805193e-54 | -8.615850e-47 |
Msa0134390 | Msa0565470 | 0.811041 | 8.535436e-51 | -8.615850e-47 |
Msa0155500 | Msa0565470 | 0.824424 | 8.132346e-54 | -8.615850e-47 |
Msa0160650 | Msa0565470 | 0.800830 | 1.198619e-48 | -8.615850e-47 |
Msa0165820 | Msa0565470 | 0.808244 | 3.406753e-50 | -8.615850e-47 |
Msa0175240 | Msa0565470 | 0.811818 | 5.787316e-51 | -8.615850e-47 |
Msa0178440 | Msa0565470 | 0.810857 | 9.355436e-51 | -8.615850e-47 |
Msa0184030 | Msa0565470 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
Msa0185180 | Msa0565470 | 0.832265 | 1.043517e-55 | -8.615850e-47 |
Msa0234660 | Msa0565470 | 0.830758 | 2.451840e-55 | -8.615850e-47 |
Msa0372990 | Msa0565470 | 0.807924 | 3.985800e-50 | -8.615850e-47 |
Msa0421480 | Msa0565470 | 0.802534 | 5.361442e-49 | -8.615850e-47 |
Msa0238960 | Msa0565470 | 0.828463 | 8.864899e-55 | -8.615850e-47 |
Msa0272990 | Msa0565470 | 0.826790 | 2.235296e-54 | -8.615850e-47 |
Msa0483090 | Msa0565470 | 0.824643 | 7.221488e-54 | -8.615850e-47 |
Msa0510660 | Msa0565470 | 0.847667 | 1.000072e-59 | -8.615850e-47 |
Msa0510750 | Msa0565470 | 0.842596 | 2.348488e-58 | -8.615850e-47 |
Msa0555510 | Msa0565470 | 0.812559 | 3.989444e-51 | -8.615850e-47 |
Msa0565320 | Msa0565470 | 0.994775 | 4.312481e-210 | -8.615850e-47 |
Msa0565470 | Msa0588600 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
Msa0565470 | Msa0608940 | 0.819731 | 9.954510e-53 | -8.615850e-47 |
Msa0565470 | Msa0691740 | 0.812030 | 5.204618e-51 | -8.615850e-47 |
Msa0565470 | Msa0712670 | 0.818237 | 2.176221e-52 | -8.615850e-47 |
Msa0565470 | Msa0714060 | 0.836767 | 7.716038e-57 | -8.615850e-47 |
Msa0565470 | Msa0714200 | 0.833756 | 4.441019e-56 | -8.615850e-47 |
Msa0565470 | Msa0752830 | 0.806771 | 6.996659e-50 | -8.615850e-47 |
Msa0565470 | Msa0756440 | 0.822634 | 2.132360e-53 | -8.615850e-47 |
Msa0565470 | Msa0768240 | 0.810426 | 1.159798e-50 | -8.615850e-47 |
Msa0565470 | Msa0834200 | 0.808939 | 2.420321e-50 | -8.615850e-47 |
Msa0565470 | Msa0835550 | 0.808063 | 3.723673e-50 | -8.615850e-47 |
Msa0565470 | Msa0855050 | 0.810772 | 9.763281e-51 | -8.615850e-47 |
Msa0565470 | Msa0880310 | 0.832647 | 8.389000e-56 | -8.615850e-47 |
Msa0565470 | Msa0967260 | 0.817120 | 3.888155e-52 | -8.615850e-47 |
Msa0565470 | Msa0998940 | 0.808400 | 3.156054e-50 | -8.615850e-47 |
Msa0565470 | Msa1021680 | 0.817187 | 3.756496e-52 | -8.615850e-47 |
Msa0565470 | Msa1026160 | 0.811815 | 5.796283e-51 | -8.615850e-47 |
Msa0565470 | Msa1071380 | 0.805751 | 1.147490e-49 | -8.615850e-47 |
Msa0565470 | Msa1099330 | 0.825361 | 4.887914e-54 | -8.615850e-47 |
Msa0565470 | Msa1101300 | 0.805237 | 1.471156e-49 | -8.615850e-47 |
Msa0565470 | Msa1112010 | 0.828730 | 7.641155e-55 | -8.615850e-47 |
Msa0565470 | Msa1129660 | 0.808505 | 2.997343e-50 | -8.615850e-47 |
Msa0565470 | Msa1240240 | 0.810287 | 1.242626e-50 | -8.615850e-47 |
Msa0565470 | Msa1296610 | 0.810513 | 1.110213e-50 | -8.615850e-47 |
Msa0565470 | Msa1320660 | 0.823490 | 1.347128e-53 | -8.615850e-47 |
Msa0565470 | Msa1339310 | 0.820857 | 5.494434e-53 | -8.615850e-47 |
Msa0565470 | Msa1346220 | 0.804317 | 2.289373e-49 | -8.615850e-47 |
Msa0565470 | Msa1346340 | 0.805792 | 1.125133e-49 | -8.615850e-47 |
Msa0565470 | Msa1381830 | 0.818015 | 2.443814e-52 | -8.615850e-47 |
Msa0565470 | Msa1384970 | 0.818507 | 1.890595e-52 | -8.615850e-47 |
Msa0565470 | Msa1388270 | 0.834879 | 2.321948e-56 | -8.615850e-47 |
Msa0565470 | Msa1390480 | 0.852272 | 5.147110e-61 | -8.615850e-47 |
Msa0565470 | Msa1392570 | 0.827836 | 1.255409e-54 | -8.615850e-47 |
Msa0565470 | Msa1401000 | 0.806586 | 7.653507e-50 | -8.615850e-47 |
Msa0565470 | Msa1427260 | 0.800604 | 1.333174e-48 | -8.615850e-47 |
Msa0565470 | Msa1459630 | 0.803636 | 3.170767e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565470 | MtrunA17_Chr8g0380221 | 88.085 | 235 | 21 | 3 | 3 | 235 | 5 | 234 | 1.41e-136 | 383 |
Msa0565470 | MtrunA17_Chr8g0374001 | 33.099 | 142 | 86 | 5 | 96 | 228 | 52 | 193 | 1.00e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0565470 | AT1G29390.1 | 46.522 | 230 | 114 | 3 | 7 | 235 | 5 | 226 | 4.30e-62 | 194 |
Msa0565470 | AT1G29395.1 | 47.210 | 233 | 97 | 5 | 7 | 230 | 5 | 220 | 2.71e-61 | 192 |
Msa0565470 | AT1G29390.2 | 58.940 | 151 | 61 | 1 | 86 | 235 | 33 | 183 | 3.46e-61 | 190 |
Msa0565470 | AT4G37220.1 | 32.653 | 147 | 90 | 5 | 91 | 228 | 45 | 191 | 2.00e-14 | 70.1 |
Msa0565470 | AT3G50830.1 | 39.316 | 117 | 66 | 4 | 113 | 224 | 72 | 188 | 1.73e-13 | 67.4 |
Find 62 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTCCCCGTCCTCCTAAC+TGG | 0.157384 | 4_1:-66316518 | Msa0565470:five_prime_UTR |
TTTATTGATTGCGGTGTATT+TGG | 0.202554 | 4_1:-66313695 | Msa0565470:CDS |
AATGGAACAATAAATGATTT+TGG | 0.211324 | 4_1:+66315191 | None:intergenic |
GTCAGCATTCTTGGCACTTC+TGG | 0.222017 | 4_1:-66314907 | Msa0565470:CDS |
GTTGGAATGTTGATATTATT+TGG | 0.278093 | 4_1:-66313505 | Msa0565470:three_prime_UTR |
GTAGAGATCCACTGAATATT+AGG | 0.279652 | 4_1:+66316034 | None:intergenic |
CGTCTCTTCTTTCATATTCC+AGG | 0.292869 | 4_1:-66314882 | Msa0565470:intron |
TTGATTACAGTGTTAATCTT+AGG | 0.300217 | 4_1:-66316551 | Msa0565470:five_prime_UTR |
CTCATGAGGCTGTGAGATTA+AGG | 0.311797 | 4_1:-66313839 | Msa0565470:intron |
ACCAAGAGTAACGCTATAAA+TGG | 0.318021 | 4_1:+66313873 | None:intergenic |
AAAGCCGTTGGTGGTAGTTT+TGG | 0.318747 | 4_1:+66316096 | None:intergenic |
TGATGATGGATCTGTTCTTC+TGG | 0.366042 | 4_1:+66316306 | None:intergenic |
TGGTGTGTGGTCAGCATTCT+TGG | 0.386108 | 4_1:-66314916 | Msa0565470:CDS |
CTGTTCTTCTGGTGCGGTTG+AGG | 0.390332 | 4_1:+66316317 | None:intergenic |
AGATCATTCACTCGTCATTA+CGG | 0.405431 | 4_1:-66316139 | Msa0565470:CDS |
CCTGAGGCATAGTGGATTGA+AGG | 0.417360 | 4_1:+66316237 | None:intergenic |
GAAAGGATAAGGAGCATAAG+AGG | 0.419085 | 4_1:+66316063 | None:intergenic |
GGGGCTTGCAAAGCAAATAA+TGG | 0.425620 | 4_1:+66315173 | None:intergenic |
GAAGAAATGATATCATCATT+AGG | 0.448312 | 4_1:-66316397 | Msa0565470:exon |
TTAGGAGTAGTGAAAGGATA+AGG | 0.451051 | 4_1:+66316052 | None:intergenic |
TTAAATAATGGAGTTAGAAT+CGG | 0.451444 | 4_1:-66313423 | Msa0565470:three_prime_UTR |
TTGTTGCTTCTCATCTGAGT+TGG | 0.458098 | 4_1:-66313577 | Msa0565470:exon |
TGGACATACAGAGGTAGATA+TGG | 0.467160 | 4_1:-66314936 | Msa0565470:intron |
ACATTTCTCAAGAACAAGCT+TGG | 0.467961 | 4_1:-66313665 | Msa0565470:CDS |
GGGTCCCCGTCCTCCTAACT+GGG | 0.479535 | 4_1:-66316517 | Msa0565470:five_prime_UTR |
GCCATTTATAGCGTTACTCT+TGG | 0.480930 | 4_1:-66313874 | Msa0565470:CDS |
TTCAATTGTTTCCACCTTAG+CGG | 0.484293 | 4_1:-66313623 | Msa0565470:CDS |
CTGAGCCCAGTTAGGAGGAC+GGG | 0.498874 | 4_1:+66316512 | None:intergenic |
ATCGTTGACATACTTTATCC+AGG | 0.500817 | 4_1:+66315136 | None:intergenic |
GTAGTTCGTGCATTTACAGT+TGG | 0.502281 | 4_1:+66316352 | None:intergenic |
CCTTCAATCCACTATGCCTC+AGG | 0.515434 | 4_1:-66316237 | Msa0565470:intron |
CGTGATTTCTTTATTGATTG+CGG | 0.531142 | 4_1:-66313704 | Msa0565470:CDS |
GTTTCCACCTTAGCGGTCAT+CGG | 0.533114 | 4_1:-66313616 | Msa0565470:CDS |
CGCAATCAATAAAGAAATCA+CGG | 0.554346 | 4_1:+66313705 | None:intergenic |
AGAACCCTCATGTCAGAGGT+TGG | 0.555418 | 4_1:+66313321 | None:intergenic |
TGACTCTGAGCCCAGTTAGG+AGG | 0.563143 | 4_1:+66316507 | None:intergenic |
TGTACTTACCTGAGGCATAG+TGG | 0.566472 | 4_1:+66316229 | None:intergenic |
AACTCCAAAACTACCACCAA+CGG | 0.569021 | 4_1:-66316100 | Msa0565470:CDS |
TAATCTTAGGAGTTTGAGAG+TGG | 0.576588 | 4_1:-66316538 | Msa0565470:five_prime_UTR |
ATGGATCTGTTCTTCTGGTG+CGG | 0.578225 | 4_1:+66316311 | None:intergenic |
AACTCCAACCTCTGACATGA+GGG | 0.578895 | 4_1:-66313325 | Msa0565470:three_prime_UTR |
TCACTACTCCTAATATTCAG+TGG | 0.580865 | 4_1:-66316042 | Msa0565470:CDS |
TTTGCCAGGGACACAAAAGA+AGG | 0.594762 | 4_1:-66313730 | Msa0565470:intron |
AAGGTGCGAGTGCGAGTGCG+AGG | 0.599156 | 4_1:+66316256 | None:intergenic |
GATACCGATGACCGCTAAGG+TGG | 0.607165 | 4_1:+66313612 | None:intergenic |
GCAAAGAACCCTCATGTCAG+AGG | 0.611423 | 4_1:+66313317 | None:intergenic |
CTTAATCTCACAGCCTCATG+AGG | 0.615359 | 4_1:+66313840 | None:intergenic |
GGAAAACACACGAAAGCCGT+TGG | 0.617683 | 4_1:+66316084 | None:intergenic |
TTGGAGAAATCATTTGACCA+AGG | 0.622670 | 4_1:-66313646 | Msa0565470:CDS |
GAACTCCAACCTCTGACATG+AGG | 0.624120 | 4_1:-66313326 | Msa0565470:three_prime_UTR |
AATCTTAGGAGTTTGAGAGT+GGG | 0.628845 | 4_1:-66316537 | Msa0565470:five_prime_UTR |
AAACACACGAAAGCCGTTGG+TGG | 0.629663 | 4_1:+66316087 | None:intergenic |
CTGGAATATGAAAGAAGAGA+CGG | 0.630891 | 4_1:+66314883 | None:intergenic |
AGTGATACCGATGACCGCTA+AGG | 0.637419 | 4_1:+66313609 | None:intergenic |
TGAATATTAGGAGTAGTGAA+AGG | 0.638291 | 4_1:+66316046 | None:intergenic |
TCTGAGCCCAGTTAGGAGGA+CGG | 0.639456 | 4_1:+66316511 | None:intergenic |
AACTCAGATGAGAAGCAACA+AGG | 0.646149 | 4_1:+66313579 | None:intergenic |
AGGTGGAAACAATTGAACCT+TGG | 0.646271 | 4_1:+66313629 | None:intergenic |
TGAGCCCAGTTAGGAGGACG+GGG | 0.667944 | 4_1:+66316513 | None:intergenic |
GGTGATTGTAGCTCCTCATG+AGG | 0.668319 | 4_1:-66313853 | Msa0565470:CDS |
AGGTGCGAGTGCGAGTGCGA+GGG | 0.690132 | 4_1:+66316257 | None:intergenic |
ACAGAGGTAGATATGGTGTG+TGG | 0.705598 | 4_1:-66314929 | Msa0565470:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATTAGATCAATAAA+AGG | + | chr4_1:66314860-66314879 | None:intergenic | 10.0% |
!!! | TATTCTTTTTGAATATTAAT+TGG | - | chr4_1:66315874-66315893 | Msa0565470:intron | 10.0% |
!! | TAAATAAAAATAATACATGT+TGG | - | chr4_1:66316301-66316320 | Msa0565470:CDS | 10.0% |
!!! | GTTCATATTATATCAATTTT+CGG | - | chr4_1:66313918-66313937 | Msa0565470:intron | 15.0% |
!!! | AAGTATGTAATATTTTGAAA+CGG | + | chr4_1:66314039-66314058 | None:intergenic | 15.0% |
!!! | TCTAATTATTTTACACAAAT+TGG | - | chr4_1:66314868-66314887 | Msa0565470:intron | 15.0% |
!!! | AAGAAGATTTAGATTTTAAA+TGG | + | chr4_1:66315226-66315245 | None:intergenic | 15.0% |
!! | TAAAATCTAAATCTTCTTAA+TGG | - | chr4_1:66315228-66315247 | Msa0565470:intron | 15.0% |
!!! | AGAATATAATTATGGATTAT+TGG | + | chr4_1:66315447-66315466 | None:intergenic | 15.0% |
!! | TAAACATGAGAATATAATTA+TGG | + | chr4_1:66315455-66315474 | None:intergenic | 15.0% |
!!! | TTTTTTCTCATACAAAAATT+CGG | - | chr4_1:66315518-66315537 | Msa0565470:intron | 15.0% |
!! | TGTAAACAAATTCTTAAAAT+TGG | - | chr4_1:66315544-66315563 | Msa0565470:intron | 15.0% |
!! | TATTCAAAAAGAATAAAGAA+CGG | + | chr4_1:66315869-66315888 | None:intergenic | 15.0% |
!! | AAAAAAGATAAAATTTCTTC+CGG | - | chr4_1:66315897-66315916 | Msa0565470:intron | 15.0% |
!!! | CTTTTTACTTACTTAAATAA+TGG | - | chr4_1:66316389-66316408 | Msa0565470:CDS | 15.0% |
!! | GTTAATGAATGAAATGTTAT+CGG | - | chr4_1:66313960-66313979 | Msa0565470:intron | 20.0% |
!!! | GTATATCTTTTGTATTCTTT+TGG | - | chr4_1:66314503-66314522 | Msa0565470:intron | 20.0% |
!! | ATGAATATTCAAAATCTTGT+AGG | - | chr4_1:66314580-66314599 | Msa0565470:intron | 20.0% |
!! | TGAATATTCAAAATCTTGTA+GGG | - | chr4_1:66314581-66314600 | Msa0565470:intron | 20.0% |
!!! | AATGGAACAATAAATGATTT+TGG | + | chr4_1:66314636-66314655 | None:intergenic | 20.0% |
!! | AAGAGAATAACAATTATTCT+TGG | + | chr4_1:66314818-66314837 | None:intergenic | 20.0% |
!! | TATTGTTTACTTCTAACTAT+TGG | - | chr4_1:66315258-66315277 | Msa0565470:intron | 20.0% |
!! | ATTTCTTAGAAAGAAATGTA+GGG | + | chr4_1:66315395-66315414 | None:intergenic | 20.0% |
!! | AATTTCTTAGAAAGAAATGT+AGG | + | chr4_1:66315396-66315415 | None:intergenic | 20.0% |
!! | TTTGTATGAGAAAAAATGTT+TGG | + | chr4_1:66315514-66315533 | None:intergenic | 20.0% |
!! | CAAATTGAAAAGGAAATAAA+CGG | + | chr4_1:66315646-66315665 | None:intergenic | 20.0% |
!!! | TTAAATAATGGAGTTAGAAT+CGG | - | chr4_1:66316401-66316420 | Msa0565470:exon | 20.0% |
! | TTGATTACAGTGTTAATCTT+AGG | - | chr4_1:66313273-66313292 | Msa0565470:three_prime_UTR | 25.0% |
! | AGAGTCAATGAATCAAAAAT+TGG | - | chr4_1:66313342-66313361 | Msa0565470:three_prime_UTR | 25.0% |
! | GAAGAAATGATATCATCATT+AGG | - | chr4_1:66313427-66313446 | Msa0565470:three_prime_UTR | 25.0% |
! | ATGATAAGAGAGAGAATAAA+TGG | + | chr4_1:66313646-66313665 | None:intergenic | 25.0% |
! | ATTGAAATATGAAACTGCAA+TGG | + | chr4_1:66313990-66314009 | None:intergenic | 25.0% |
!!! | TTTGATTTTGAACAACTGAT+TGG | - | chr4_1:66314122-66314141 | Msa0565470:intron | 25.0% |
!! | TTGATTTTGAACAACTGATT+GGG | - | chr4_1:66314123-66314142 | Msa0565470:intron | 25.0% |
! | ATCAGATATCCAATCAATAT+TGG | - | chr4_1:66314190-66314209 | Msa0565470:intron | 25.0% |
! | ATGATTCATCCAATATTGAT+TGG | + | chr4_1:66314202-66314221 | None:intergenic | 25.0% |
!! | AAATGCGATTCATTAGATTT+TGG | - | chr4_1:66314259-66314278 | Msa0565470:intron | 25.0% |
! | CAAGTTACATAGATAAATAG+AGG | + | chr4_1:66314377-66314396 | None:intergenic | 25.0% |
! | AATAACTGAACAATGAAAGA+CGG | + | chr4_1:66314541-66314560 | None:intergenic | 25.0% |
!! | GTTTTCTTGTTCAGTTTATA+TGG | - | chr4_1:66314722-66314741 | Msa0565470:intron | 25.0% |
!!! | AAAATCTACTTTGAAACAGT+TGG | + | chr4_1:66314748-66314767 | None:intergenic | 25.0% |
! | ATGAAATTTAGGAATCTTGA+AGG | - | chr4_1:66314991-66315010 | Msa0565470:intron | 25.0% |
! | TGAAATTTAGGAATCTTGAA+GGG | - | chr4_1:66314992-66315011 | Msa0565470:intron | 25.0% |
!!! | GAAAACCAACATTTTGTTTT+AGG | - | chr4_1:66315071-66315090 | Msa0565470:intron | 25.0% |
! | TCAATAGTAACACATAGTTT+GGG | + | chr4_1:66315687-66315706 | None:intergenic | 25.0% |
! | TGTGGAGTGTATTAATATAA+GGG | - | chr4_1:66315719-66315738 | Msa0565470:intron | 25.0% |
! | ATATTAATACACTCCACATA+TGG | + | chr4_1:66315797-66315816 | None:intergenic | 25.0% |
! | ATGTGGAGTGTATTAATATA+AGG | - | chr4_1:66315798-66315817 | Msa0565470:intron | 25.0% |
! | TGTGGAGTGTATTAATATAA+GGG | - | chr4_1:66315719-66315738 | Msa0565470:intron | 25.0% |
!! | GTAAGCAAATTCATGTTTTT+GGG | - | chr4_1:66316007-66316026 | Msa0565470:intron | 25.0% |
!!! | TAAGCAAATTCATGTTTTTG+GGG | - | chr4_1:66316008-66316027 | Msa0565470:intron | 25.0% |
! | GTTGGAATGTTGATATTATT+TGG | - | chr4_1:66316319-66316338 | Msa0565470:CDS | 25.0% |
TCTCTCTTATCATATTTCCA+TGG | - | chr4_1:66313653-66313672 | Msa0565470:CDS | 30.0% | |
! | AATGATCTGAAATGAAACCA+TGG | + | chr4_1:66313673-66313692 | None:intergenic | 30.0% |
TGAATATTAGGAGTAGTGAA+AGG | + | chr4_1:66313781-66313800 | None:intergenic | 30.0% | |
CATTAACACAACTAATCGTA+TGG | + | chr4_1:66313947-66313966 | None:intergenic | 30.0% | |
TCAAAAAGCTTCAGTTGAAA+GGG | + | chr4_1:66314107-66314126 | None:intergenic | 30.0% | |
ATCAAAAAGCTTCAGTTGAA+AGG | + | chr4_1:66314108-66314127 | None:intergenic | 30.0% | |
TGACTATCTCGTTAAGAATT+TGG | + | chr4_1:66314317-66314336 | None:intergenic | 30.0% | |
CTTGTAAGAGTGATTAATCA+TGG | - | chr4_1:66314393-66314412 | Msa0565470:intron | 30.0% | |
TGCTGGTAGTAATCTTATTA+TGG | - | chr4_1:66314466-66314485 | Msa0565470:intron | 30.0% | |
TCATCAGCACATAACAAATT+TGG | + | chr4_1:66314564-66314583 | None:intergenic | 30.0% | |
!! | ATCTTGTAGGGTTTTAATAC+TGG | - | chr4_1:66314593-66314612 | Msa0565470:intron | 30.0% |
! | TGTTTGCTCAACAAATTTTG+TGG | - | chr4_1:66314772-66314791 | Msa0565470:intron | 30.0% |
GATGTATAAGAGAATATACC+TGG | + | chr4_1:66314963-66314982 | None:intergenic | 30.0% | |
ATCATATGCGCATGAAATTT+AGG | - | chr4_1:66314980-66314999 | Msa0565470:intron | 30.0% | |
GAAATTTAGGAATCTTGAAG+GGG | - | chr4_1:66314993-66315012 | Msa0565470:intron | 30.0% | |
! | GTTTTCACCACTTTCAATAA+AGG | + | chr4_1:66315057-66315076 | None:intergenic | 30.0% |
AGGTTCCTAAAACAAAATGT+TGG | + | chr4_1:66315079-66315098 | None:intergenic | 30.0% | |
!!! | ATTTTGTTTTAGGAACCTCA+GGG | - | chr4_1:66315081-66315100 | Msa0565470:intron | 30.0% |
GAAAAGTAAAAACTGCAAAG+TGG | - | chr4_1:66315133-66315152 | Msa0565470:intron | 30.0% | |
TGTAATGAGAAAACTTGTAC+AGG | + | chr4_1:66315314-66315333 | None:intergenic | 30.0% | |
! | AAGAGAGTAGAATTTTGTCT+TGG | + | chr4_1:66315353-66315372 | None:intergenic | 30.0% |
ATTGAAAAGGAAATAAACGG+AGG | + | chr4_1:66315643-66315662 | None:intergenic | 30.0% | |
! | TTCCTTTTCAATTTGTACGA+TGG | - | chr4_1:66315651-66315670 | Msa0565470:intron | 30.0% |
ATCCATCGTACAAATTGAAA+AGG | + | chr4_1:66315656-66315675 | None:intergenic | 30.0% | |
! | AACACATAGTTTGGGTATTT+TGG | + | chr4_1:66315679-66315698 | None:intergenic | 30.0% |
GTCAATAGTAACACATAGTT+TGG | + | chr4_1:66315688-66315707 | None:intergenic | 30.0% | |
ATATTAATACACTCCACAGT+TGG | + | chr4_1:66315717-66315736 | None:intergenic | 30.0% | |
CTGTGGAGTGTATTAATATA+AGG | - | chr4_1:66315718-66315737 | Msa0565470:intron | 30.0% | |
GTGGAGTGTATTAATATAAG+GGG | - | chr4_1:66315720-66315739 | Msa0565470:intron | 30.0% | |
! | GGTAAGCAAATTCATGTTTT+TGG | - | chr4_1:66316006-66316025 | Msa0565470:intron | 30.0% |
! | TAAATAGGGTAAGTTGACAA+CGG | + | chr4_1:66316042-66316061 | None:intergenic | 30.0% |
CGCAATCAATAAAGAAATCA+CGG | + | chr4_1:66316122-66316141 | None:intergenic | 30.0% | |
! | CGTGATTTCTTTATTGATTG+CGG | - | chr4_1:66316120-66316139 | Msa0565470:CDS | 30.0% |
! | TTTATTGATTGCGGTGTATT+TGG | - | chr4_1:66316129-66316148 | Msa0565470:CDS | 30.0% |
TAATCTTAGGAGTTTGAGAG+TGG | - | chr4_1:66313286-66313305 | Msa0565470:three_prime_UTR | 35.0% | |
AATCTTAGGAGTTTGAGAGT+GGG | - | chr4_1:66313287-66313306 | Msa0565470:three_prime_UTR | 35.0% | |
AGAATGTATGTACTTACCTG+AGG | + | chr4_1:66313606-66313625 | None:intergenic | 35.0% | |
AGATCATTCACTCGTCATTA+CGG | - | chr4_1:66313685-66313704 | Msa0565470:CDS | 35.0% | |
TTAGGAGTAGTGAAAGGATA+AGG | + | chr4_1:66313775-66313794 | None:intergenic | 35.0% | |
TCACTACTCCTAATATTCAG+TGG | - | chr4_1:66313782-66313801 | Msa0565470:intron | 35.0% | |
GTAGAGATCCACTGAATATT+AGG | + | chr4_1:66313793-66313812 | None:intergenic | 35.0% | |
!! | AAAGGGATCATGAGAGTATT+TGG | + | chr4_1:66314090-66314109 | None:intergenic | 35.0% |
! | AACTGAAATACCTGTTTTGC+TGG | - | chr4_1:66314449-66314468 | Msa0565470:intron | 35.0% |
AAGATTACTACCAGCAAAAC+AGG | + | chr4_1:66314462-66314481 | None:intergenic | 35.0% | |
!! | TAGGGTTTTAATACTGGCAA+AGG | - | chr4_1:66314599-66314618 | Msa0565470:intron | 35.0% |
!! | AGGGTTTTAATACTGGCAAA+GGG | - | chr4_1:66314600-66314619 | Msa0565470:intron | 35.0% |
ATCGTTGACATACTTTATCC+AGG | + | chr4_1:66314691-66314710 | None:intergenic | 35.0% | |
AAAAGGTAAAACAGCACTCT+TGG | + | chr4_1:66314843-66314862 | None:intergenic | 35.0% | |
TACACAAATTGGACATACAG+AGG | - | chr4_1:66314879-66314898 | Msa0565470:intron | 35.0% | |
CTGGAATATGAAAGAAGAGA+CGG | + | chr4_1:66314944-66314963 | None:intergenic | 35.0% | |
CACTTTCAATAAAGGCCATA+TGG | + | chr4_1:66315049-66315068 | None:intergenic | 35.0% | |
CATATGGCCTTTATTGAAAG+TGG | - | chr4_1:66315047-66315066 | Msa0565470:intron | 35.0% | |
!!! | CATTTTGTTTTAGGAACCTC+AGG | - | chr4_1:66315080-66315099 | Msa0565470:intron | 35.0% |
! | TAGCATAAGCCTTTTATGCT+AGG | - | chr4_1:66315159-66315178 | Msa0565470:CDS | 35.0% |
! | TCTACTCTCTTTTCCACAAT+AGG | - | chr4_1:66315362-66315381 | Msa0565470:intron | 35.0% |
!!! | AGGAGTGTTTCAAGTGTTTT+AGG | + | chr4_1:66315585-66315604 | None:intergenic | 35.0% |
TAAAACACTTGAAACACTCC+TGG | - | chr4_1:66315584-66315603 | Msa0565470:intron | 35.0% | |
GTATTAATATAAGGGCAACC+CGG | - | chr4_1:66315727-66315746 | Msa0565470:intron | 35.0% | |
TAATACACTCCACATATGGT+GGG | + | chr4_1:66315793-66315812 | None:intergenic | 35.0% | |
TTAATACACTCCACATATGG+TGG | + | chr4_1:66315794-66315813 | None:intergenic | 35.0% | |
ATTAATATAAGGGGCAACTG+TGG | - | chr4_1:66315809-66315828 | Msa0565470:intron | 35.0% | |
ACCTGGAATCAAAGAATATC+CGG | + | chr4_1:66315919-66315938 | None:intergenic | 35.0% | |
ACCAAGAGTAACGCTATAAA+TGG | + | chr4_1:66315954-66315973 | None:intergenic | 35.0% | |
ACATTTCTCAAGAACAAGCT+TGG | - | chr4_1:66316159-66316178 | Msa0565470:intron | 35.0% | |
TTGGAGAAATCATTTGACCA+AGG | - | chr4_1:66316178-66316197 | Msa0565470:intron | 35.0% | |
TTCAATTGTTTCCACCTTAG+CGG | - | chr4_1:66316201-66316220 | Msa0565470:intron | 35.0% | |
GTAGTTCGTGCATTTACAGT+TGG | + | chr4_1:66313475-66313494 | None:intergenic | 40.0% | |
!! | TGATGATGGATCTGTTCTTC+TGG | + | chr4_1:66313521-66313540 | None:intergenic | 40.0% |
! | AGCGATGATGATGATGATGA+TGG | + | chr4_1:66313535-66313554 | None:intergenic | 40.0% |
!!! | GGTGGTAGTTTTGGAGTTAT+CGG | + | chr4_1:66313722-66313741 | None:intergenic | 40.0% |
AACTCCAAAACTACCACCAA+CGG | - | chr4_1:66313724-66313743 | Msa0565470:CDS | 40.0% | |
! | GAAAGGATAAGGAGCATAAG+AGG | + | chr4_1:66313764-66313783 | None:intergenic | 40.0% |
TGCAAAATTCCTCAACTGCA+GGG | + | chr4_1:66314152-66314171 | None:intergenic | 40.0% | |
ATGCAAAATTCCTCAACTGC+AGG | + | chr4_1:66314153-66314172 | None:intergenic | 40.0% | |
! | GGATATCTGATTTGTCTGCA+AGG | + | chr4_1:66314181-66314200 | None:intergenic | 40.0% |
TGGACATACAGAGGTAGATA+TGG | - | chr4_1:66314888-66314907 | Msa0565470:CDS | 40.0% | |
CGTCTCTTCTTTCATATTCC+AGG | - | chr4_1:66314942-66314961 | Msa0565470:intron | 40.0% | |
GAATCTTGAAGGGGTAACAA+TGG | - | chr4_1:66315002-66315021 | Msa0565470:intron | 40.0% | |
TAGACCTCAAGAACACCATA+TGG | - | chr4_1:66315031-66315050 | Msa0565470:intron | 40.0% | |
TAGAATCAATATGTGCCCTG+AGG | + | chr4_1:66315099-66315118 | None:intergenic | 40.0% | |
! | ATAAGCCTTTTATGCTAGGC+AGG | - | chr4_1:66315163-66315182 | Msa0565470:CDS | 40.0% |
! | TAAGCCTTTTATGCTAGGCA+GGG | - | chr4_1:66315164-66315183 | Msa0565470:CDS | 40.0% |
TAATCCCTGCCTAGCATAAA+AGG | + | chr4_1:66315171-66315190 | None:intergenic | 40.0% | |
! | AGTGAAAAGAGTGCATCAGA+TGG | + | chr4_1:66315287-66315306 | None:intergenic | 40.0% |
TCCGGATATTCTTTGATTCC+AGG | - | chr4_1:66315915-66315934 | Msa0565470:intron | 40.0% | |
GCCATTTATAGCGTTACTCT+TGG | - | chr4_1:66315950-66315969 | Msa0565470:intron | 40.0% | |
! | GTAAGTTGACAACGGTTCAA+AGG | + | chr4_1:66316034-66316053 | None:intergenic | 40.0% |
ACATCGTTATTCTCTTTGCC+AGG | - | chr4_1:66316080-66316099 | Msa0565470:CDS | 40.0% | |
CATCGTTATTCTCTTTGCCA+GGG | - | chr4_1:66316081-66316100 | Msa0565470:CDS | 40.0% | |
AGGTGGAAACAATTGAACCT+TGG | + | chr4_1:66316198-66316217 | None:intergenic | 40.0% | |
AACTCAGATGAGAAGCAACA+AGG | + | chr4_1:66316248-66316267 | None:intergenic | 40.0% | |
! | TTGTTGCTTCTCATCTGAGT+TGG | - | chr4_1:66316247-66316266 | Msa0565470:CDS | 40.0% |
!! | TTTTGACTCTGAGCCCAGTT+AGG | + | chr4_1:66313323-66313342 | None:intergenic | 45.0% |
ATGGATCTGTTCTTCTGGTG+CGG | + | chr4_1:66313516-66313535 | None:intergenic | 45.0% | |
TGTACTTACCTGAGGCATAG+TGG | + | chr4_1:66313598-66313617 | None:intergenic | 45.0% | |
!!! | AAAGCCGTTGGTGGTAGTTT+TGG | + | chr4_1:66313731-66313750 | None:intergenic | 45.0% |
GGTTGAAGTTGTACAGTCTG+TGG | - | chr4_1:66314280-66314299 | Msa0565470:intron | 45.0% | |
GGGGCTTGCAAAGCAAATAA+TGG | + | chr4_1:66314654-66314673 | None:intergenic | 45.0% | |
ACAGAGGTAGATATGGTGTG+TGG | - | chr4_1:66314895-66314914 | Msa0565470:CDS | 45.0% | |
AAGGCCATATGGTGTTCTTG+AGG | + | chr4_1:66315038-66315057 | None:intergenic | 45.0% | |
TCAAGTGAGATGGATGAACC+AGG | + | chr4_1:66315605-66315624 | None:intergenic | 45.0% | |
TCCATCTCACTTGATTCCCA+TGG | - | chr4_1:66315611-66315630 | Msa0565470:intron | 45.0% | |
ACCATGGGAATCAAGTGAGA+TGG | + | chr4_1:66315615-66315634 | None:intergenic | 45.0% | |
! | TAAACGGAGGTGCAAACCAT+GGG | + | chr4_1:66315630-66315649 | None:intergenic | 45.0% |
! | ATAAACGGAGGTGCAAACCA+TGG | + | chr4_1:66315631-66315650 | None:intergenic | 45.0% |
! | TATTGACTGCAAGCCAACTG+TGG | - | chr4_1:66315701-66315720 | Msa0565470:intron | 45.0% |
AATGGCAACTCAAGTTCACC+TGG | + | chr4_1:66315936-66315955 | None:intergenic | 45.0% | |
CTTAATCTCACAGCCTCATG+AGG | + | chr4_1:66315987-66316006 | None:intergenic | 45.0% | |
CTCATGAGGCTGTGAGATTA+AGG | - | chr4_1:66315985-66316004 | Msa0565470:intron | 45.0% | |
TTTGCCAGGGACACAAAAGA+AGG | - | chr4_1:66316094-66316113 | Msa0565470:CDS | 45.0% | |
AACTCCAACCTCTGACATGA+GGG | - | chr4_1:66316499-66316518 | Msa0565470:five_prime_UTR | 45.0% | |
!!! | GTTTTTTATTTTAATAAATA+GGG | + | chr4_1:66316056-66316075 | None:intergenic | 5.0% |
!!! | AGTTTTTTATTTTAATAAAT+AGG | + | chr4_1:66316057-66316076 | None:intergenic | 5.0% |
!! | CCTGAGGCATAGTGGATTGA+AGG | + | chr4_1:66313590-66313609 | None:intergenic | 50.0% |
CCTTCAATCCACTATGCCTC+AGG | - | chr4_1:66313587-66313606 | Msa0565470:CDS | 50.0% | |
AAACACACGAAAGCCGTTGG+TGG | + | chr4_1:66313740-66313759 | None:intergenic | 50.0% | |
GGAAAACACACGAAAGCCGT+TGG | + | chr4_1:66313743-66313762 | None:intergenic | 50.0% | |
ATTGGGATTCCCTGCAGTTG+AGG | - | chr4_1:66314140-66314159 | Msa0565470:intron | 50.0% | |
TCCAGGCAAAAACAGCTGCA+GGG | + | chr4_1:66314674-66314693 | None:intergenic | 50.0% | |
ATCCAGGCAAAAACAGCTGC+AGG | + | chr4_1:66314675-66314694 | None:intergenic | 50.0% | |
TGGTGTGTGGTCAGCATTCT+TGG | - | chr4_1:66314908-66314927 | Msa0565470:CDS | 50.0% | |
GTCAGCATTCTTGGCACTTC+TGG | - | chr4_1:66314917-66314936 | Msa0565470:CDS | 50.0% | |
GTAGGGTGACACACCTATTG+TGG | + | chr4_1:66315378-66315397 | None:intergenic | 50.0% | |
! | ATGTGGGAGCTTTAGTGCAC+CGG | + | chr4_1:66315749-66315768 | None:intergenic | 50.0% |
ACTAAAGCTCCCACATACGC+AGG | - | chr4_1:66315753-66315772 | Msa0565470:intron | 50.0% | |
CTAAAGCTCCCACATACGCA+GGG | - | chr4_1:66315754-66315773 | Msa0565470:intron | 50.0% | |
GGTGATTGTAGCTCCTCATG+AGG | - | chr4_1:66315971-66315990 | Msa0565470:intron | 50.0% | |
GTTTCCACCTTAGCGGTCAT+CGG | - | chr4_1:66316208-66316227 | Msa0565470:intron | 50.0% | |
AGTGATACCGATGACCGCTA+AGG | + | chr4_1:66316218-66316237 | None:intergenic | 50.0% | |
GAACTCCAACCTCTGACATG+AGG | - | chr4_1:66316498-66316517 | Msa0565470:five_prime_UTR | 50.0% | |
AGAACCCTCATGTCAGAGGT+TGG | + | chr4_1:66316506-66316525 | None:intergenic | 50.0% | |
GCAAAGAACCCTCATGTCAG+AGG | + | chr4_1:66316510-66316529 | None:intergenic | 50.0% | |
TCTGAGCCCAGTTAGGAGGA+CGG | + | chr4_1:66313316-66313335 | None:intergenic | 55.0% | |
TGACTCTGAGCCCAGTTAGG+AGG | + | chr4_1:66313320-66313339 | None:intergenic | 55.0% | |
CTGTTCTTCTGGTGCGGTTG+AGG | + | chr4_1:66313510-66313529 | None:intergenic | 55.0% | |
CCAGGCAAAAACAGCTGCAG+GGG | + | chr4_1:66314673-66314692 | None:intergenic | 55.0% | |
! | TGTGGGAGCTTTAGTGCACC+GGG | + | chr4_1:66315748-66315767 | None:intergenic | 55.0% |
! | CATATGGTGGGACCTCTTCC+CGG | + | chr4_1:66315781-66315800 | None:intergenic | 55.0% |
GGAAGAGGTCCCACCATATG+TGG | - | chr4_1:66315781-66315800 | Msa0565470:intron | 55.0% | |
! | GGCACCTTCTTTTGTGTCCC+TGG | + | chr4_1:66316101-66316120 | None:intergenic | 55.0% |
GATACCGATGACCGCTAAGG+TGG | + | chr4_1:66316215-66316234 | None:intergenic | 55.0% | |
TGAGCCCAGTTAGGAGGACG+GGG | + | chr4_1:66313314-66313333 | None:intergenic | 60.0% | |
CTGAGCCCAGTTAGGAGGAC+GGG | + | chr4_1:66313315-66313334 | None:intergenic | 60.0% | |
!!! | CCCCTGCAGCTGTTTTTGCC+TGG | - | chr4_1:66314670-66314689 | Msa0565470:intron | 60.0% |
TTCCCGGACCCTGCGTATGT+GGG | + | chr4_1:66315765-66315784 | None:intergenic | 60.0% | |
TGGGTCCCCGTCCTCCTAAC+TGG | - | chr4_1:66313306-66313325 | Msa0565470:three_prime_UTR | 65.0% | |
GGGTCCCCGTCCTCCTAACT+GGG | - | chr4_1:66313307-66313326 | Msa0565470:three_prime_UTR | 65.0% | |
AGGTGCGAGTGCGAGTGCGA+GGG | + | chr4_1:66313570-66313589 | None:intergenic | 65.0% | |
AAGGTGCGAGTGCGAGTGCG+AGG | + | chr4_1:66313571-66313590 | None:intergenic | 65.0% | |
GCTCCCACATACGCAGGGTC+CGG | - | chr4_1:66315759-66315778 | Msa0565470:intron | 65.0% | |
CTCCCACATACGCAGGGTCC+GGG | - | chr4_1:66315760-66315779 | Msa0565470:intron | 65.0% | |
CTTCCCGGACCCTGCGTATG+TGG | + | chr4_1:66315766-66315785 | None:intergenic | 65.0% | |
CATACGCAGGGTCCGGGAAG+AGG | - | chr4_1:66315766-66315785 | Msa0565470:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 66313272 | 66316574 | 66313272 | ID=Msa0565470;Name=Msa0565470 |
chr4_1 | mRNA | 66313272 | 66316574 | 66313272 | ID=Msa0565470-mRNA-1;Parent=Msa0565470;Name=Msa0565470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=161|1|1|1|1|1|6|310|235 |
chr4_1 | exon | 66313272 | 66313744 | 66313272 | ID=Msa0565470-mRNA-1:exon:21519;Parent=Msa0565470-mRNA-1 |
chr4_1 | exon | 66313840 | 66313909 | 66313840 | ID=Msa0565470-mRNA-1:exon:21518;Parent=Msa0565470-mRNA-1 |
chr4_1 | exon | 66314883 | 66314947 | 66314883 | ID=Msa0565470-mRNA-1:exon:21517;Parent=Msa0565470-mRNA-1 |
chr4_1 | exon | 66315149 | 66315244 | 66315149 | ID=Msa0565470-mRNA-1:exon:21516;Parent=Msa0565470-mRNA-1 |
chr4_1 | exon | 66316022 | 66316159 | 66316022 | ID=Msa0565470-mRNA-1:exon:21515;Parent=Msa0565470-mRNA-1 |
chr4_1 | exon | 66316238 | 66316574 | 66316238 | ID=Msa0565470-mRNA-1:exon:21514;Parent=Msa0565470-mRNA-1 |
chr4_1 | five_prime_UTR | 66316414 | 66316574 | 66316414 | ID=Msa0565470-mRNA-1:five_prime_utr;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66316238 | 66316413 | 66316238 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66316022 | 66316159 | 66316022 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66315149 | 66315244 | 66315149 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66314883 | 66314947 | 66314883 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66313840 | 66313909 | 66313840 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | CDS | 66313582 | 66313744 | 66313582 | ID=Msa0565470-mRNA-1:cds;Parent=Msa0565470-mRNA-1 |
chr4_1 | three_prime_UTR | 66313272 | 66313581 | 66313272 | ID=Msa0565470-mRNA-1:three_prime_utr;Parent=Msa0565470-mRNA-1 |
Gene Sequence |
Protein sequence |