AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855050 MtrunA17_Chr5g0446771 96.238 319 9 1 1 316 1 319 0.0 630
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855050 AT4G37000.1 51.333 300 140 3 20 316 22 318 5.43e-101 300

Find 62 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACGACCTTGCTTCTTC+TGG 0.137652 5_4:+48088698 None:intergenic
GTTTGAGATACAAGTTTATT+TGG 0.191207 5_4:-48086811 Msa0855050:exon
CTCGAAAAGACCTTGTTCTT+TGG 0.238806 5_4:-48087248 Msa0855050:CDS
CAAAGCAAGTGTTGGGGATA+TGG 0.247429 5_4:-48087014 Msa0855050:CDS
TTCTGTTTCTTGTTCTATAA+TGG 0.268979 5_4:-48088725 Msa0855050:CDS
ATCAGCTCGAACACAAAATT+TGG 0.277458 5_4:+48087315 None:intergenic
CCCAACACTTGCTTTGAAAT+CGG 0.292400 5_4:+48087021 None:intergenic
AGAACAAGAATTAGCATTGT+TGG 0.348949 5_4:+48087282 None:intergenic
AACAGTAAAATACTCCTTGA+TGG 0.363131 5_4:+48086831 None:intergenic
GCTACGACCTTGCTTCTTCT+GGG 0.370091 5_4:+48088699 None:intergenic
AAGACTATTGAGGTTGATCT+TGG 0.379733 5_4:-48086907 Msa0855050:CDS
AGAAGCTGCAAAACAGATAT+TGG 0.387915 5_4:-48086857 Msa0855050:CDS
CTCTTATAGTATTGAACATC+AGG 0.390571 5_4:+48088565 None:intergenic
TCAAGCTTTCCAAGGTTGTT+GGG 0.399971 5_4:-48086883 Msa0855050:CDS
TCCTACTTCTCTCTCGGAAC+AGG 0.405515 5_4:+48086978 None:intergenic
CCGATTTCAAAGCAAGTGTT+GGG 0.413297 5_4:-48087021 Msa0855050:CDS
TTCAAGCTTTCCAAGGTTGT+TGG 0.420130 5_4:-48086884 Msa0855050:CDS
CCAACACTTGCTTTGAAATC+GGG 0.426823 5_4:+48087022 None:intergenic
TTAGCATTGTTGGACTGCTT+CGG 0.427662 5_4:+48087292 None:intergenic
CCCGATTTCAAAGCAAGTGT+TGG 0.432798 5_4:-48087022 Msa0855050:CDS
CGATACACATAGGCAGGCTT+TGG 0.432959 5_4:-48087187 Msa0855050:CDS
GTGACATAAGGTTGAACCTC+TGG 0.461727 5_4:+48087156 None:intergenic
CTTGTTATAACATTTCAGTA+AGG 0.468071 5_4:+48086551 None:intergenic
ATCATTTGAACTGTTAAGAT+AGG 0.468826 5_4:+48087341 None:intergenic
CAATACTATAAGAGCAAGAA+TGG 0.480003 5_4:-48088556 Msa0855050:CDS
ATCAAGCATGAGATTCTTGT+GGG 0.484852 5_4:+48088645 None:intergenic
TTCCTCTCCTACTTCTCTCT+CGG 0.487400 5_4:+48086972 None:intergenic
ACAGATATTGGAAGCCATCA+AGG 0.487475 5_4:-48086845 Msa0855050:CDS
AAAGACATAAACATTTGTCT+TGG 0.497744 5_4:-48088853 Msa0855050:five_prime_UTR
CTGAAATGTTATAACAAGAA+AGG 0.501994 5_4:-48086546 None:intergenic
AGAAACAGAAGAACGAGAAG+TGG 0.502938 5_4:+48088738 None:intergenic
GTTTGTTGGTGGTGTTAGAA+TGG 0.507388 5_4:-48086610 Msa0855050:three_prime_UTR
AGATGGAAAGTGATGAATGT+TGG 0.508445 5_4:+48088797 None:intergenic
ATCTTGGTTCAAGCTTTCCA+AGG 0.509846 5_4:-48086891 Msa0855050:CDS
GTGCATGCTGAGCTACCAAC+AGG 0.516588 5_4:-48087393 Msa0855050:CDS
TTGTGGGGTGCTGAAACAAA+TGG 0.519655 5_4:+48088661 None:intergenic
GCTTCTGGACCCAACAACCT+TGG 0.527888 5_4:+48086874 None:intergenic
AAAGTGATGAATGTTGGAAA+TGG 0.528882 5_4:+48088803 None:intergenic
TTGTTATAACATTTCAGTAA+GGG 0.531258 5_4:+48086552 None:intergenic
CATTAGAAACAAGACTATTG+AGG 0.540436 5_4:-48086917 Msa0855050:CDS
ACAGGGGAATCAGTGTTGCT+TGG 0.543335 5_4:+48088505 None:intergenic
TAAACTCGATACACATAGGC+AGG 0.546034 5_4:-48087193 Msa0855050:CDS
ATTCAGACAGAAAATGATGA+AGG 0.546561 5_4:-48087081 Msa0855050:CDS
AAAAGCGAAGAAGTGACATA+AGG 0.548015 5_4:+48087144 None:intergenic
GCAAGTGTTGGGGATATGGT+TGG 0.554687 5_4:-48087010 Msa0855050:CDS
ATGCGAACAAATATAGCGGT+TGG 0.559048 5_4:+48087102 None:intergenic
ACATCAGGTGGAAGTGAACA+AGG 0.566315 5_4:+48088580 None:intergenic
ATATCTAATGATCCTCCTGT+TGG 0.577783 5_4:+48087378 None:intergenic
GATCAAGCATGAGATTCTTG+TGG 0.577920 5_4:+48088644 None:intergenic
GCCTGTTCCGAGAGAGAAGT+AGG 0.581979 5_4:-48086979 Msa0855050:CDS
TAAGGGATACATGCTTGAAG+TGG 0.587662 5_4:+48086569 None:intergenic
GGTAATCTGGCCAAAGAACA+AGG 0.591389 5_4:+48087238 None:intergenic
TTCCGAGAGAGAAGTAGGAG+AGG 0.601529 5_4:-48086974 Msa0855050:CDS
TTATAGTATTGAACATCAGG+TGG 0.606078 5_4:+48088568 None:intergenic
ATGGATACCCAGAAGAAGCA+AGG 0.631772 5_4:-48088706 Msa0855050:CDS
CGATTTCAAAGCAAGTGTTG+GGG 0.632172 5_4:-48087020 Msa0855050:CDS
ACACTAAACTCGATACACAT+AGG 0.635620 5_4:-48087197 Msa0855050:CDS
CATGCTGAGCTACCAACAGG+AGG 0.671949 5_4:-48087390 Msa0855050:CDS
CTGAATGCGAACAAATATAG+CGG 0.692980 5_4:+48087098 None:intergenic
TCAAGCATGAGATTCTTGTG+GGG 0.732179 5_4:+48088646 None:intergenic
TTACCTTAAAACTTTCTACG+AGG 0.733422 5_4:-48087220 Msa0855050:CDS
CGGTTGGAGATGCAACACTG+CGG 0.782235 5_4:+48087118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAATAAATTATTA+TGG - chr5_4:48086549-48086568 Msa0855050:three_prime_UTR 0.0%
!! TAAAAATAAATAAATTATTA+TGG - chr5_4:48086549-48086568 Msa0855050:three_prime_UTR 0.0%
!!! TATTGTTATGTTATTTTATT+AGG - chr5_4:48087068-48087087 Msa0855050:CDS 10.0%
!!! ATATACTTATCTTTTTTATA+CGG - chr5_4:48087454-48087473 Msa0855050:intron 10.0%
!!! TATTGTTATGTTATTTTATT+AGG - chr5_4:48087068-48087087 Msa0855050:CDS 10.0%
!!! ATATACTTATCTTTTTTATA+CGG - chr5_4:48087454-48087473 Msa0855050:intron 10.0%
!! TATACTCTAACATGAAAATA+TGG + chr5_4:48087020-48087039 None:intergenic 20.0%
!! TTCATGTTAGAGTATATATT+TGG - chr5_4:48087024-48087043 Msa0855050:CDS 20.0%
!! ATTATGTTTCTTCAACATAA+GGG + chr5_4:48087703-48087722 None:intergenic 20.0%
!! TCATATAACAAAACAATCAA+TGG + chr5_4:48087916-48087935 None:intergenic 20.0%
!! TTGTTATAACATTTCAGTAA+GGG + chr5_4:48088919-48088938 None:intergenic 20.0%
!! TATACTCTAACATGAAAATA+TGG + chr5_4:48087020-48087039 None:intergenic 20.0%
!! TTCATGTTAGAGTATATATT+TGG - chr5_4:48087024-48087043 Msa0855050:CDS 20.0%
!! ATTATGTTTCTTCAACATAA+GGG + chr5_4:48087703-48087722 None:intergenic 20.0%
!! TCATATAACAAAACAATCAA+TGG + chr5_4:48087916-48087935 None:intergenic 20.0%
!! TTGTTATAACATTTCAGTAA+GGG + chr5_4:48088919-48088938 None:intergenic 20.0%
! GAACAAAAGAACATAAAAAG+AGG - chr5_4:48086576-48086595 Msa0855050:three_prime_UTR 25.0%
! AAAGACATAAACATTTGTCT+TGG - chr5_4:48086615-48086634 Msa0855050:three_prime_UTR 25.0%
!! TTCTGTTTCTTGTTCTATAA+TGG - chr5_4:48086743-48086762 Msa0855050:three_prime_UTR 25.0%
!!! GAATTTTGAGAGAAAAAAGT+AGG + chr5_4:48086998-48087017 None:intergenic 25.0%
! TATATATTTGGTTGAGAACT+AGG - chr5_4:48087036-48087055 Msa0855050:CDS 25.0%
! ATGCAAATAACCAAATTAAG+TGG + chr5_4:48087240-48087259 None:intergenic 25.0%
! CTAAAATTAGTTGCTTACTT+TGG - chr5_4:48087306-48087325 Msa0855050:CDS 25.0%
! TATGTAACGATAGTTAATCA+AGG + chr5_4:48087435-48087454 None:intergenic 25.0%
!! TGATTCTTAAAGTATTTCAC+TGG - chr5_4:48087505-48087524 Msa0855050:intron 25.0%
! TTCCTTAATTGTGATTGTTT+GGG - chr5_4:48087544-48087563 Msa0855050:intron 25.0%
! CTATCTAACTATCTACAAAT+AGG - chr5_4:48087627-48087646 Msa0855050:intron 25.0%
! CATTATGTTTCTTCAACATA+AGG + chr5_4:48087704-48087723 None:intergenic 25.0%
! TCAAATAAGCTAATCCAAAT+AGG + chr5_4:48087736-48087755 None:intergenic 25.0%
!!! TATTTTTCCATTAGTTCTCT+AGG - chr5_4:48087843-48087862 Msa0855050:intron 25.0%
!! TCTCAGATAGATTTTGTAAT+GGG - chr5_4:48088045-48088064 Msa0855050:intron 25.0%
! ATCATTTGAACTGTTAAGAT+AGG + chr5_4:48088130-48088149 None:intergenic 25.0%
!!! TAGAAAGTTTTAAGGTAATC+TGG + chr5_4:48088246-48088265 None:intergenic 25.0%
!! GTTTGAGATACAAGTTTATT+TGG - chr5_4:48088657-48088676 Msa0855050:CDS 25.0%
!!! TAATTGTTTTGTACGTTTGT+TGG - chr5_4:48088844-48088863 Msa0855050:exon 25.0%
!! CTTGTTATAACATTTCAGTA+AGG + chr5_4:48088920-48088939 None:intergenic 25.0%
! GAACAAAAGAACATAAAAAG+AGG - chr5_4:48086576-48086595 Msa0855050:three_prime_UTR 25.0%
! AAAGACATAAACATTTGTCT+TGG - chr5_4:48086615-48086634 Msa0855050:three_prime_UTR 25.0%
!! TTCTGTTTCTTGTTCTATAA+TGG - chr5_4:48086743-48086762 Msa0855050:three_prime_UTR 25.0%
!!! GAATTTTGAGAGAAAAAAGT+AGG + chr5_4:48086998-48087017 None:intergenic 25.0%
! TATATATTTGGTTGAGAACT+AGG - chr5_4:48087036-48087055 Msa0855050:CDS 25.0%
! ATGCAAATAACCAAATTAAG+TGG + chr5_4:48087240-48087259 None:intergenic 25.0%
! CTAAAATTAGTTGCTTACTT+TGG - chr5_4:48087306-48087325 Msa0855050:CDS 25.0%
! TATGTAACGATAGTTAATCA+AGG + chr5_4:48087435-48087454 None:intergenic 25.0%
!! TGATTCTTAAAGTATTTCAC+TGG - chr5_4:48087505-48087524 Msa0855050:intron 25.0%
! TTCCTTAATTGTGATTGTTT+GGG - chr5_4:48087544-48087563 Msa0855050:intron 25.0%
! CTATCTAACTATCTACAAAT+AGG - chr5_4:48087627-48087646 Msa0855050:intron 25.0%
! CATTATGTTTCTTCAACATA+AGG + chr5_4:48087704-48087723 None:intergenic 25.0%
! TCAAATAAGCTAATCCAAAT+AGG + chr5_4:48087736-48087755 None:intergenic 25.0%
!!! TATTTTTCCATTAGTTCTCT+AGG - chr5_4:48087843-48087862 Msa0855050:intron 25.0%
!! TCTCAGATAGATTTTGTAAT+GGG - chr5_4:48088045-48088064 Msa0855050:intron 25.0%
! ATCATTTGAACTGTTAAGAT+AGG + chr5_4:48088130-48088149 None:intergenic 25.0%
!!! TAGAAAGTTTTAAGGTAATC+TGG + chr5_4:48088246-48088265 None:intergenic 25.0%
!! GTTTGAGATACAAGTTTATT+TGG - chr5_4:48088657-48088676 Msa0855050:CDS 25.0%
!!! TAATTGTTTTGTACGTTTGT+TGG - chr5_4:48088844-48088863 Msa0855050:exon 25.0%
!! CTTGTTATAACATTTCAGTA+AGG + chr5_4:48088920-48088939 None:intergenic 25.0%
AAAGTGATGAATGTTGGAAA+TGG + chr5_4:48086668-48086687 None:intergenic 30.0%
AGAAGAAGAAGAAGATAAGA+TGG + chr5_4:48086691-48086710 None:intergenic 30.0%
! TTATAGTATTGAACATCAGG+TGG + chr5_4:48086903-48086922 None:intergenic 30.0%
! CTCTTATAGTATTGAACATC+AGG + chr5_4:48086906-48086925 None:intergenic 30.0%
CAATACTATAAGAGCAAGAA+TGG - chr5_4:48086912-48086931 Msa0855050:CDS 30.0%
AAAGTAGGAGGAAAATTACA+GGG + chr5_4:48086983-48087002 None:intergenic 30.0%
AAAAGTAGGAGGAAAATTAC+AGG + chr5_4:48086984-48087003 None:intergenic 30.0%
!! TTTTGAGAGAAAAAAGTAGG+AGG + chr5_4:48086995-48087014 None:intergenic 30.0%
AAGGACCACTTTAATCAAAT+TGG - chr5_4:48087335-48087354 Msa0855050:CDS 30.0%
CATTGCCAATTTGATTAAAG+TGG + chr5_4:48087343-48087362 None:intergenic 30.0%
! TCTTAAAGTATTTCACTGGT+TGG - chr5_4:48087509-48087528 Msa0855050:intron 30.0%
GTTCCTTAATTGTGATTGTT+TGG - chr5_4:48087543-48087562 Msa0855050:intron 30.0%
TACCCAAACAATCACAATTA+AGG + chr5_4:48087549-48087568 None:intergenic 30.0%
GAAGAAACATAATGTTCATG+AGG - chr5_4:48087710-48087729 Msa0855050:intron 30.0%
! GTCTCAGATAGATTTTGTAA+TGG - chr5_4:48088044-48088063 Msa0855050:intron 30.0%
AGAACAAGAATTAGCATTGT+TGG + chr5_4:48088189-48088208 None:intergenic 30.0%
TTACCTTAAAACTTTCTACG+AGG - chr5_4:48088248-48088267 Msa0855050:intron 30.0%
ATTCAGACAGAAAATGATGA+AGG - chr5_4:48088387-48088406 Msa0855050:intron 30.0%
GCTTATCTGATAAAAAGAGA+TGG - chr5_4:48088525-48088544 Msa0855050:CDS 30.0%
CATTAGAAACAAGACTATTG+AGG - chr5_4:48088551-48088570 Msa0855050:CDS 30.0%
AACAGTAAAATACTCCTTGA+TGG + chr5_4:48088640-48088659 None:intergenic 30.0%
AAAGTGATGAATGTTGGAAA+TGG + chr5_4:48086668-48086687 None:intergenic 30.0%
AGAAGAAGAAGAAGATAAGA+TGG + chr5_4:48086691-48086710 None:intergenic 30.0%
! TTATAGTATTGAACATCAGG+TGG + chr5_4:48086903-48086922 None:intergenic 30.0%
! CTCTTATAGTATTGAACATC+AGG + chr5_4:48086906-48086925 None:intergenic 30.0%
CAATACTATAAGAGCAAGAA+TGG - chr5_4:48086912-48086931 Msa0855050:CDS 30.0%
AAAGTAGGAGGAAAATTACA+GGG + chr5_4:48086983-48087002 None:intergenic 30.0%
AAAAGTAGGAGGAAAATTAC+AGG + chr5_4:48086984-48087003 None:intergenic 30.0%
!! TTTTGAGAGAAAAAAGTAGG+AGG + chr5_4:48086995-48087014 None:intergenic 30.0%
AAGGACCACTTTAATCAAAT+TGG - chr5_4:48087335-48087354 Msa0855050:CDS 30.0%
CATTGCCAATTTGATTAAAG+TGG + chr5_4:48087343-48087362 None:intergenic 30.0%
! TCTTAAAGTATTTCACTGGT+TGG - chr5_4:48087509-48087528 Msa0855050:intron 30.0%
GTTCCTTAATTGTGATTGTT+TGG - chr5_4:48087543-48087562 Msa0855050:intron 30.0%
TACCCAAACAATCACAATTA+AGG + chr5_4:48087549-48087568 None:intergenic 30.0%
GAAGAAACATAATGTTCATG+AGG - chr5_4:48087710-48087729 Msa0855050:intron 30.0%
! GTCTCAGATAGATTTTGTAA+TGG - chr5_4:48088044-48088063 Msa0855050:intron 30.0%
AGAACAAGAATTAGCATTGT+TGG + chr5_4:48088189-48088208 None:intergenic 30.0%
TTACCTTAAAACTTTCTACG+AGG - chr5_4:48088248-48088267 Msa0855050:intron 30.0%
ATTCAGACAGAAAATGATGA+AGG - chr5_4:48088387-48088406 Msa0855050:intron 30.0%
GCTTATCTGATAAAAAGAGA+TGG - chr5_4:48088525-48088544 Msa0855050:CDS 30.0%
CATTAGAAACAAGACTATTG+AGG - chr5_4:48088551-48088570 Msa0855050:CDS 30.0%
AACAGTAAAATACTCCTTGA+TGG + chr5_4:48088640-48088659 None:intergenic 30.0%
AGATGGAAAGTGATGAATGT+TGG + chr5_4:48086674-48086693 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTCA+AGG - chr5_4:48086697-48086716 Msa0855050:three_prime_UTR 35.0%
ATCAAGCATGAGATTCTTGT+GGG + chr5_4:48086826-48086845 None:intergenic 35.0%
AAGTAGGAGGAAAATTACAG+GGG + chr5_4:48086982-48087001 None:intergenic 35.0%
! TAGAGTGTCTAAAGTGAGTT+TGG + chr5_4:48087150-48087169 None:intergenic 35.0%
TTACTAACTACTCACCTTAG+AGG + chr5_4:48087187-48087206 None:intergenic 35.0%
GTGATTTCGACCACTTAATT+TGG - chr5_4:48087227-48087246 Msa0855050:CDS 35.0%
! TTGCTTACTTTGGAGAATGA+AGG - chr5_4:48087316-48087335 Msa0855050:CDS 35.0%
ACGATAGTTAATCAAGGCTT+AGG + chr5_4:48087429-48087448 None:intergenic 35.0%
TAATGTTCATGAGGCCTATT+TGG - chr5_4:48087719-48087738 Msa0855050:intron 35.0%
GCTTATTTGAGCTTACATAC+TGG - chr5_4:48087746-48087765 Msa0855050:intron 35.0%
AAGCTATCCTAGAGAACTAA+TGG + chr5_4:48087853-48087872 None:intergenic 35.0%
CATGTGTTGGATAAACAACT+TGG + chr5_4:48087965-48087984 None:intergenic 35.0%
CAAGTTGTTTATCCAACACA+TGG - chr5_4:48087963-48087982 Msa0855050:intron 35.0%
!! TAGATTTTGTAATGGGAAGC+TGG - chr5_4:48088052-48088071 Msa0855050:intron 35.0%
!! AGATTTTGTAATGGGAAGCT+GGG - chr5_4:48088053-48088072 Msa0855050:intron 35.0%
ATATCTAATGATCCTCCTGT+TGG + chr5_4:48088093-48088112 None:intergenic 35.0%
ATCAGCTCGAACACAAAATT+TGG + chr5_4:48088156-48088175 None:intergenic 35.0%
! TGTCCTCGTAGAAAGTTTTA+AGG + chr5_4:48088254-48088273 None:intergenic 35.0%
ACACTAAACTCGATACACAT+AGG - chr5_4:48088271-48088290 Msa0855050:intron 35.0%
AAAAGCGAAGAAGTGACATA+AGG + chr5_4:48088327-48088346 None:intergenic 35.0%
CTGAATGCGAACAAATATAG+CGG + chr5_4:48088373-48088392 None:intergenic 35.0%
! AAGACTATTGAGGTTGATCT+TGG - chr5_4:48088561-48088580 Msa0855050:CDS 35.0%
! AATATCTGTTTTGCAGCTTC+TGG + chr5_4:48088612-48088631 None:intergenic 35.0%
AGAAGCTGCAAAACAGATAT+TGG - chr5_4:48088611-48088630 Msa0855050:CDS 35.0%
!! TTGTTTTGTACGTTTGTTGG+TGG - chr5_4:48088847-48088866 Msa0855050:five_prime_UTR 35.0%
AGATGGAAAGTGATGAATGT+TGG + chr5_4:48086674-48086693 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTCA+AGG - chr5_4:48086697-48086716 Msa0855050:three_prime_UTR 35.0%
ATCAAGCATGAGATTCTTGT+GGG + chr5_4:48086826-48086845 None:intergenic 35.0%
AAGTAGGAGGAAAATTACAG+GGG + chr5_4:48086982-48087001 None:intergenic 35.0%
! TAGAGTGTCTAAAGTGAGTT+TGG + chr5_4:48087150-48087169 None:intergenic 35.0%
TTACTAACTACTCACCTTAG+AGG + chr5_4:48087187-48087206 None:intergenic 35.0%
GTGATTTCGACCACTTAATT+TGG - chr5_4:48087227-48087246 Msa0855050:CDS 35.0%
! TTGCTTACTTTGGAGAATGA+AGG - chr5_4:48087316-48087335 Msa0855050:CDS 35.0%
ACGATAGTTAATCAAGGCTT+AGG + chr5_4:48087429-48087448 None:intergenic 35.0%
TAATGTTCATGAGGCCTATT+TGG - chr5_4:48087719-48087738 Msa0855050:intron 35.0%
GCTTATTTGAGCTTACATAC+TGG - chr5_4:48087746-48087765 Msa0855050:intron 35.0%
AAGCTATCCTAGAGAACTAA+TGG + chr5_4:48087853-48087872 None:intergenic 35.0%
CATGTGTTGGATAAACAACT+TGG + chr5_4:48087965-48087984 None:intergenic 35.0%
CAAGTTGTTTATCCAACACA+TGG - chr5_4:48087963-48087982 Msa0855050:intron 35.0%
!! TAGATTTTGTAATGGGAAGC+TGG - chr5_4:48088052-48088071 Msa0855050:intron 35.0%
!! AGATTTTGTAATGGGAAGCT+GGG - chr5_4:48088053-48088072 Msa0855050:intron 35.0%
ATATCTAATGATCCTCCTGT+TGG + chr5_4:48088093-48088112 None:intergenic 35.0%
ATCAGCTCGAACACAAAATT+TGG + chr5_4:48088156-48088175 None:intergenic 35.0%
! TGTCCTCGTAGAAAGTTTTA+AGG + chr5_4:48088254-48088273 None:intergenic 35.0%
ACACTAAACTCGATACACAT+AGG - chr5_4:48088271-48088290 Msa0855050:intron 35.0%
AAAAGCGAAGAAGTGACATA+AGG + chr5_4:48088327-48088346 None:intergenic 35.0%
CTGAATGCGAACAAATATAG+CGG + chr5_4:48088373-48088392 None:intergenic 35.0%
! AAGACTATTGAGGTTGATCT+TGG - chr5_4:48088561-48088580 Msa0855050:CDS 35.0%
! AATATCTGTTTTGCAGCTTC+TGG + chr5_4:48088612-48088631 None:intergenic 35.0%
AGAAGCTGCAAAACAGATAT+TGG - chr5_4:48088611-48088630 Msa0855050:CDS 35.0%
!! TTGTTTTGTACGTTTGTTGG+TGG - chr5_4:48088847-48088866 Msa0855050:five_prime_UTR 35.0%
AGAAACAGAAGAACGAGAAG+TGG + chr5_4:48086733-48086752 None:intergenic 40.0%
! GCAAGGTCGTAGCAAATTTT+TGG - chr5_4:48086779-48086798 Msa0855050:three_prime_UTR 40.0%
TCAAGCATGAGATTCTTGTG+GGG + chr5_4:48086825-48086844 None:intergenic 40.0%
GATCAAGCATGAGATTCTTG+TGG + chr5_4:48086827-48086846 None:intergenic 40.0%
TCAACCATGTTTCTCCTCTA+AGG - chr5_4:48087170-48087189 Msa0855050:CDS 40.0%
TCCAACACATGGTCTAGTTA+TGG - chr5_4:48087974-48087993 Msa0855050:intron 40.0%
ACCATAACTAGACCATGTGT+TGG + chr5_4:48087978-48087997 None:intergenic 40.0%
TTAGCATTGTTGGACTGCTT+CGG + chr5_4:48088179-48088198 None:intergenic 40.0%
! CAAAGAACAAGGTCTTTTCG+AGG + chr5_4:48088222-48088241 None:intergenic 40.0%
CTCGAAAAGACCTTGTTCTT+TGG - chr5_4:48088220-48088239 Msa0855050:intron 40.0%
TAAACTCGATACACATAGGC+AGG - chr5_4:48088275-48088294 Msa0855050:intron 40.0%
!! GGCTTTGGAAAAAATTCCAG+AGG - chr5_4:48088296-48088315 Msa0855050:intron 40.0%
ATGCGAACAAATATAGCGGT+TGG + chr5_4:48088369-48088388 None:intergenic 40.0%
!! CCAACACTTGCTTTGAAATC+GGG + chr5_4:48088449-48088468 None:intergenic 40.0%
!! CCCAACACTTGCTTTGAAAT+CGG + chr5_4:48088450-48088469 None:intergenic 40.0%
CCGATTTCAAAGCAAGTGTT+GGG - chr5_4:48088447-48088466 Msa0855050:intron 40.0%
! CGATTTCAAAGCAAGTGTTG+GGG - chr5_4:48088448-48088467 Msa0855050:intron 40.0%
ATCTTGGTTCAAGCTTTCCA+AGG - chr5_4:48088577-48088596 Msa0855050:CDS 40.0%
TTCAAGCTTTCCAAGGTTGT+TGG - chr5_4:48088584-48088603 Msa0855050:CDS 40.0%
TCAAGCTTTCCAAGGTTGTT+GGG - chr5_4:48088585-48088604 Msa0855050:CDS 40.0%
ACAGATATTGGAAGCCATCA+AGG - chr5_4:48088623-48088642 Msa0855050:CDS 40.0%
!! GTTTGTTGGTGGTGTTAGAA+TGG - chr5_4:48088858-48088877 Msa0855050:five_prime_UTR 40.0%
TAAGGGATACATGCTTGAAG+TGG + chr5_4:48088902-48088921 None:intergenic 40.0%
AGAAACAGAAGAACGAGAAG+TGG + chr5_4:48086733-48086752 None:intergenic 40.0%
! GCAAGGTCGTAGCAAATTTT+TGG - chr5_4:48086779-48086798 Msa0855050:three_prime_UTR 40.0%
TCAAGCATGAGATTCTTGTG+GGG + chr5_4:48086825-48086844 None:intergenic 40.0%
GATCAAGCATGAGATTCTTG+TGG + chr5_4:48086827-48086846 None:intergenic 40.0%
TCAACCATGTTTCTCCTCTA+AGG - chr5_4:48087170-48087189 Msa0855050:CDS 40.0%
TCCAACACATGGTCTAGTTA+TGG - chr5_4:48087974-48087993 Msa0855050:intron 40.0%
ACCATAACTAGACCATGTGT+TGG + chr5_4:48087978-48087997 None:intergenic 40.0%
TTAGCATTGTTGGACTGCTT+CGG + chr5_4:48088179-48088198 None:intergenic 40.0%
! CAAAGAACAAGGTCTTTTCG+AGG + chr5_4:48088222-48088241 None:intergenic 40.0%
CTCGAAAAGACCTTGTTCTT+TGG - chr5_4:48088220-48088239 Msa0855050:intron 40.0%
TAAACTCGATACACATAGGC+AGG - chr5_4:48088275-48088294 Msa0855050:intron 40.0%
!! GGCTTTGGAAAAAATTCCAG+AGG - chr5_4:48088296-48088315 Msa0855050:intron 40.0%
ATGCGAACAAATATAGCGGT+TGG + chr5_4:48088369-48088388 None:intergenic 40.0%
!! CCAACACTTGCTTTGAAATC+GGG + chr5_4:48088449-48088468 None:intergenic 40.0%
!! CCCAACACTTGCTTTGAAAT+CGG + chr5_4:48088450-48088469 None:intergenic 40.0%
CCGATTTCAAAGCAAGTGTT+GGG - chr5_4:48088447-48088466 Msa0855050:intron 40.0%
! CGATTTCAAAGCAAGTGTTG+GGG - chr5_4:48088448-48088467 Msa0855050:intron 40.0%
ATCTTGGTTCAAGCTTTCCA+AGG - chr5_4:48088577-48088596 Msa0855050:CDS 40.0%
TTCAAGCTTTCCAAGGTTGT+TGG - chr5_4:48088584-48088603 Msa0855050:CDS 40.0%
TCAAGCTTTCCAAGGTTGTT+GGG - chr5_4:48088585-48088604 Msa0855050:CDS 40.0%
ACAGATATTGGAAGCCATCA+AGG - chr5_4:48088623-48088642 Msa0855050:CDS 40.0%
!! GTTTGTTGGTGGTGTTAGAA+TGG - chr5_4:48088858-48088877 Msa0855050:five_prime_UTR 40.0%
TAAGGGATACATGCTTGAAG+TGG + chr5_4:48088902-48088921 None:intergenic 40.0%
ATGGATACCCAGAAGAAGCA+AGG - chr5_4:48086762-48086781 Msa0855050:three_prime_UTR 45.0%
!! TTGTGGGGTGCTGAAACAAA+TGG + chr5_4:48086810-48086829 None:intergenic 45.0%
ACATCAGGTGGAAGTGAACA+AGG + chr5_4:48086891-48086910 None:intergenic 45.0%
CTCACCTTAGAGGAGAAACA+TGG + chr5_4:48087177-48087196 None:intergenic 45.0%
!! AGAACAAGGTCTTTTCGAGG+TGG + chr5_4:48088219-48088238 None:intergenic 45.0%
GGTAATCTGGCCAAAGAACA+AGG + chr5_4:48088233-48088252 None:intergenic 45.0%
GTGACATAAGGTTGAACCTC+TGG + chr5_4:48088315-48088334 None:intergenic 45.0%
CCCGATTTCAAAGCAAGTGT+TGG - chr5_4:48088446-48088465 Msa0855050:intron 45.0%
!! CAAAGCAAGTGTTGGGGATA+TGG - chr5_4:48088454-48088473 Msa0855050:intron 45.0%
TTCCTCTCCTACTTCTCTCT+CGG + chr5_4:48088499-48088518 None:intergenic 45.0%
ATGGATACCCAGAAGAAGCA+AGG - chr5_4:48086762-48086781 Msa0855050:three_prime_UTR 45.0%
!! TTGTGGGGTGCTGAAACAAA+TGG + chr5_4:48086810-48086829 None:intergenic 45.0%
ACATCAGGTGGAAGTGAACA+AGG + chr5_4:48086891-48086910 None:intergenic 45.0%
CTCACCTTAGAGGAGAAACA+TGG + chr5_4:48087177-48087196 None:intergenic 45.0%
!! AGAACAAGGTCTTTTCGAGG+TGG + chr5_4:48088219-48088238 None:intergenic 45.0%
GGTAATCTGGCCAAAGAACA+AGG + chr5_4:48088233-48088252 None:intergenic 45.0%
GTGACATAAGGTTGAACCTC+TGG + chr5_4:48088315-48088334 None:intergenic 45.0%
CCCGATTTCAAAGCAAGTGT+TGG - chr5_4:48088446-48088465 Msa0855050:intron 45.0%
!! CAAAGCAAGTGTTGGGGATA+TGG - chr5_4:48088454-48088473 Msa0855050:intron 45.0%
TTCCTCTCCTACTTCTCTCT+CGG + chr5_4:48088499-48088518 None:intergenic 45.0%
!!! ATTATTTTAATTACTTATTA+AGG - chr5_4:48087589-48087608 Msa0855050:intron 5.0%
!!! ATTATTTTAATTACTTATTA+AGG - chr5_4:48087589-48087608 Msa0855050:intron 5.0%
GCTACGACCTTGCTTCTTCT+GGG + chr5_4:48086772-48086791 None:intergenic 50.0%
TGCTACGACCTTGCTTCTTC+TGG + chr5_4:48086773-48086792 None:intergenic 50.0%
! ACAGGGGAATCAGTGTTGCT+TGG + chr5_4:48086966-48086985 None:intergenic 50.0%
CGATACACATAGGCAGGCTT+TGG - chr5_4:48088281-48088300 Msa0855050:intron 50.0%
!! GCAAGTGTTGGGGATATGGT+TGG - chr5_4:48088458-48088477 Msa0855050:intron 50.0%
TCCTACTTCTCTCTCGGAAC+AGG + chr5_4:48088493-48088512 None:intergenic 50.0%
TTCCGAGAGAGAAGTAGGAG+AGG - chr5_4:48088494-48088513 Msa0855050:intron 50.0%
GCTACGACCTTGCTTCTTCT+GGG + chr5_4:48086772-48086791 None:intergenic 50.0%
TGCTACGACCTTGCTTCTTC+TGG + chr5_4:48086773-48086792 None:intergenic 50.0%
! ACAGGGGAATCAGTGTTGCT+TGG + chr5_4:48086966-48086985 None:intergenic 50.0%
CGATACACATAGGCAGGCTT+TGG - chr5_4:48088281-48088300 Msa0855050:intron 50.0%
!! GCAAGTGTTGGGGATATGGT+TGG - chr5_4:48088458-48088477 Msa0855050:intron 50.0%
TCCTACTTCTCTCTCGGAAC+AGG + chr5_4:48088493-48088512 None:intergenic 50.0%
TTCCGAGAGAGAAGTAGGAG+AGG - chr5_4:48088494-48088513 Msa0855050:intron 50.0%
GTGCATGCTGAGCTACCAAC+AGG - chr5_4:48088075-48088094 Msa0855050:intron 55.0%
CATGCTGAGCTACCAACAGG+AGG - chr5_4:48088078-48088097 Msa0855050:intron 55.0%
CGGTTGGAGATGCAACACTG+CGG + chr5_4:48088353-48088372 None:intergenic 55.0%
GCCTGTTCCGAGAGAGAAGT+AGG - chr5_4:48088489-48088508 Msa0855050:intron 55.0%
GCTTCTGGACCCAACAACCT+TGG + chr5_4:48088597-48088616 None:intergenic 55.0%
GTGCATGCTGAGCTACCAAC+AGG - chr5_4:48088075-48088094 Msa0855050:intron 55.0%
CATGCTGAGCTACCAACAGG+AGG - chr5_4:48088078-48088097 Msa0855050:intron 55.0%
CGGTTGGAGATGCAACACTG+CGG + chr5_4:48088353-48088372 None:intergenic 55.0%
GCCTGTTCCGAGAGAGAAGT+AGG - chr5_4:48088489-48088508 Msa0855050:intron 55.0%
GCTTCTGGACCCAACAACCT+TGG + chr5_4:48088597-48088616 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48086547 48088943 48086547 ID=Msa0855050;Name=Msa0855050
chr5_4 mRNA 48086547 48088943 48086547 ID=Msa0855050-mRNA-1;Parent=Msa0855050;Name=Msa0855050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=98|1|1|1|1|1|2|281|316
chr5_4 exon 48086547 48087439 48086547 ID=Msa0855050-mRNA-1:exon:15155;Parent=Msa0855050-mRNA-1
chr5_4 exon 48088507 48088943 48088507 ID=Msa0855050-mRNA-1:exon:15154;Parent=Msa0855050-mRNA-1
chr5_4 five_prime_UTR 48088846 48088943 48088846 ID=Msa0855050-mRNA-1:five_prime_utr;Parent=Msa0855050-mRNA-1
chr5_4 CDS 48088507 48088845 48088507 ID=Msa0855050-mRNA-1:cds;Parent=Msa0855050-mRNA-1
chr5_4 CDS 48086828 48087439 48086828 ID=Msa0855050-mRNA-1:cds;Parent=Msa0855050-mRNA-1
chr5_4 three_prime_UTR 48086547 48086827 48086547 ID=Msa0855050-mRNA-1:three_prime_utr;Parent=Msa0855050-mRNA-1
Gene Sequence

>Msa0855050

ATGATAGTGATGATCTGTAGCCATTTCCAACATTCATCACTTTCCATCTTATCTTCTTCTTCTTCTTCTTCAAGGTTTCATCTTTCCACTTCTCGTTCTTCTGTTTCTTGTTCTATAATGGATACCCAGAAGAAGCAAGGTCGTAGCAAATTTTTGGAATTTCCATTTGTTTCAGCACCCCACAAGAATCTCATGCTTGATCTTGTTTCAACAGTTGAAGATCGCTTTGAATCTCATCTTCTTCCTTGTTCACTTCCACCTGATGTTCAATACTATAAGAGCAAGAATGGTACTTCTCAAGTTTCATTGCATATTAGACCAAGCAACACTGATTCCCCTATAGATTTTGTAATGGGAAGCTGGGTGCATGCTGAGCTACCAACAGGAGGATCATTAGATATAACATCTCTTTCAGCCTATCTTAACAGTTCAAATGATGCACCAAATTTTGTGTTCGAGCTGATCCGAAGCAGTCCAACAATGCTAATTCTTGTTCTTGATTTGCCACCTCGAAAAGACCTTGTTCTTTGGCCAGATTACCTTAAAACTTTCTACGAGGACACTAAACTCGATACACATAGGCAGGCTTTGGAAAAAATTCCAGAGGTTCAACCTTATGTCACTTCTTCGCTTTTCATCCGCAGTGTTGCATCTCCAACCGCTATATTTGTTCGCATTCAGACAGAAAATGATGAAGGAGAGCGAATAGACGAGATCATCAAGAACAATATTGACCCGATTTCAAAGCAAGTGTTGGGGATATGGTTGGATCATTGCGCCTGTTCCGAGAGAGAAGTAGGAGAGGAAGATAAAGCTTATCTGATAAAAAGAGATGGTGTCATTAGAAACAAGACTATTGAGGTTGATCTTGGTTCAAGCTTTCCAAGGTTGTTGGGTCCAGAAGCTGCAAAACAGATATTGGAAGCCATCAAGGAGTATTTTACTGTTTGA

Protein sequence

>Msa0855050

MIVMICSHFQHSSLSILSSSSSSSRFHLSTSRSSVSCSIMDTQKKQGRSKFLEFPFVSAPHKNLMLDLVSTVEDRFESHLLPCSLPPDVQYYKSKNGTSQVSLHIRPSNTDSPIDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSPTMLILVLDLPPRKDLVLWPDYLKTFYEDTKLDTHRQALEKIPEVQPYVTSSLFIRSVASPTAIFVRIQTENDEGERIDEIIKNNIDPISKQVLGIWLDHCACSEREVGEEDKAYLIKRDGVIRNKTIEVDLGSSFPRLLGPEAAKQILEAIKEYFTV*