AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712670 MtrunA17_Chr5g0397331 97.740 354 8 0 1 354 1 354 0.0 726
Msa0712670 MtrunA17_Chr1g0191411 53.257 261 118 3 82 340 5 263 2.58e-93 280
Msa0712670 MtrunA17_Chr7g0273211 50.916 273 126 4 82 350 37 305 1.55e-89 271
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712670 AT3G05170.1 55.263 266 111 4 82 343 9 270 5.90e-96 288
Msa0712670 AT1G08940.1 52.893 242 108 2 82 319 9 248 4.90e-88 266

Find 87 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTTGTGAGGCCTATTT+TGG 0.129826 5_1:-4497549 None:intergenic
AAAGCGCAACGCCATCTTTA+TGG 0.148714 5_1:+4497924 Msa0712670:CDS
ATTATATTGCTACAAATTTA+TGG 0.157611 5_1:-4499164 None:intergenic
TTCGAGGGTCTCAACAATTT+TGG 0.181594 5_1:+4498581 Msa0712670:CDS
CTAACAAGAATTATTCTTCT+AGG 0.216607 5_1:-4497470 None:intergenic
TTCTTATGAGATGGTATAAA+TGG 0.250801 5_1:+4498546 Msa0712670:CDS
CAACCATGAATTCTGACTTA+TGG 0.264095 5_1:+4497158 None:intergenic
GCAAACAGAAGCCAACAAAA+AGG 0.310141 5_1:+4499123 Msa0712670:CDS
GTTTCAAGAGTCCTTCTATA+TGG 0.322885 5_1:-4497665 None:intergenic
GAACAAGAGTTAAGACAGTT+TGG 0.341634 5_1:+4498888 Msa0712670:CDS
AAAACGATGGTGATGAAAAT+TGG 0.343036 5_1:+4497621 Msa0712670:CDS
TTTGAACGTTCAAGAATTGC+TGG 0.343872 5_1:+4497710 Msa0712670:CDS
AACCATGAATTCTGACTTAT+GGG 0.351296 5_1:+4497159 None:intergenic
CAGATTCACCATTTGGAAAT+CGG 0.366998 5_1:-4497959 None:intergenic
CGGATTAGAGAACAAGATTT+CGG 0.376273 5_1:+4497749 Msa0712670:CDS
CTAAGAGCAGATATTAATAT+TGG 0.377004 5_1:+4498446 Msa0712670:CDS
AGAATTATTCTTCTAGGCCT+TGG 0.386052 5_1:-4497464 None:intergenic
TTTATGTGTCTCCATATAGA+AGG 0.387162 5_1:+4497654 Msa0712670:CDS
TCAGCCGCAGATTCACCATT+TGG 0.423620 5_1:-4497966 None:intergenic
AGGGTACCTGATCCCAAAAT+AGG 0.433029 5_1:+4497536 Msa0712670:CDS
CAATATAATGCTCGATGCAT+TGG 0.458377 5_1:+4499178 Msa0712670:three_prime_UTR
CAACGTTGGAGGCTAGTAAA+GGG 0.458660 5_1:-4497430 None:intergenic
AGGCGAGCTTGTCATGGAAA+AGG 0.462117 5_1:+4498610 Msa0712670:CDS
AAAATAGGCCTCACAAATAG+AGG 0.464701 5_1:+4497551 Msa0712670:CDS
AATTTCAATCATTGTTGTGT+AGG 0.468569 5_1:+4499345 Msa0712670:three_prime_UTR
TGAGAGTGGTAGTGATGTTA+TGG 0.472388 5_1:-4497237 None:intergenic
TTGTTGGTTAGTGAATCTAC+AGG 0.473287 5_1:-4497365 None:intergenic
GAATAATTAGAATTAGTGTT+GGG 0.484694 5_1:-4497290 None:intergenic
CACATCAAAATTCTTCTCCC+CGG 0.485925 5_1:-4498483 None:intergenic
AGAATAATTAGAATTAGTGT+TGG 0.486495 5_1:-4497291 None:intergenic
AGCAATTCTTGAACGTTCAA+AGG 0.486540 5_1:-4497708 None:intergenic
CCTGGTATGTCCATTGTTGT+TGG 0.490735 5_1:-4497381 None:intergenic
CAGTCGTAATTCAGATCAGC+AGG 0.495868 5_1:-4499060 None:intergenic
TTCATGAAGATGAGGAAAGA+AGG 0.501116 5_1:-4499097 None:intergenic
ACATCAAAATTCTTCTCCCC+GGG 0.506903 5_1:-4498482 None:intergenic
CTTGTCATGGAAAAGGGTTA+TGG 0.507893 5_1:+4498617 Msa0712670:CDS
GCAATTCTTGAACGTTCAAA+GGG 0.518725 5_1:-4497707 None:intergenic
ATTATTCTTCTAGGCCTTGG+AGG 0.521959 5_1:-4497461 None:intergenic
GGCGAGCTTGTCATGGAAAA+GGG 0.526104 5_1:+4498611 Msa0712670:CDS
TCAACGTTGGAGGCTAGTAA+AGG 0.527993 5_1:-4497431 None:intergenic
CAATGGAGGCGAGCTTGTCA+TGG 0.534795 5_1:+4498604 Msa0712670:CDS
AAAAGAAACGACCATAAAGA+TGG 0.541482 5_1:-4497935 None:intergenic
TTTGCTTCTTCATGAAGATG+AGG 0.541787 5_1:-4499105 None:intergenic
TTATATTAATCACCATGCTA+AGG 0.547846 5_1:+4499395 Msa0712670:three_prime_UTR
TAGGCCTCACAAATAGAGGT+AGG 0.550075 5_1:+4497555 Msa0712670:CDS
TAGAGGTAGGGTTCAAGCAG+AGG 0.554848 5_1:+4497568 Msa0712670:CDS
AGGTACTACATCAACGTTGG+AGG 0.554951 5_1:-4497441 None:intergenic
AAATGCTGATTGATCAAGAA+TGG 0.556731 5_1:+4498922 Msa0712670:CDS
CACTATTAAAATCCTTAGCA+TGG 0.559516 5_1:-4499407 None:intergenic
GATGTATACGATAGAATCAC+AGG 0.560616 5_1:+4497987 Msa0712670:CDS
CTGGATTCAGAGAAGAGCCT+CGG 0.566562 5_1:+4497729 Msa0712670:CDS
TGGAAAAGGGTTATGGTGGA+AGG 0.567955 5_1:+4498624 Msa0712670:CDS
TGTGAAGGCATAAATTTGCA+AGG 0.571714 5_1:+4499037 Msa0712670:intron
ATGGACGGTTGAACAATTCG+AGG 0.572004 5_1:+4498565 Msa0712670:CDS
GAACCCTACCTCTATTTGTG+AGG 0.573197 5_1:-4497559 None:intergenic
AGAATAATTCTTGTTAGACA+TGG 0.574414 5_1:+4497476 Msa0712670:CDS
GGAAAGAAGGAATTCACCAT+TGG 0.584379 5_1:-4499084 None:intergenic
TTAGACATGGAGAGAGTGAA+GGG 0.586434 5_1:+4497489 Msa0712670:CDS
CCAACAACAATGGACATACC+AGG 0.588771 5_1:+4497381 Msa0712670:CDS
TGTTGGTTAGTGAATCTACA+GGG 0.593467 5_1:-4497364 None:intergenic
AACTTGGTCATCGTGTCACA+TGG 0.596674 5_1:+4498506 Msa0712670:CDS
AGGCCTCACAAATAGAGGTA+GGG 0.600664 5_1:+4497556 Msa0712670:CDS
GTTAGACATGGAGAGAGTGA+AGG 0.602338 5_1:+4497488 Msa0712670:CDS
TATGAGATGGTATAAATGGA+CGG 0.602499 5_1:+4498550 Msa0712670:CDS
TCAAAATTCTTCTCCCCGGG+TGG 0.603303 5_1:-4498479 None:intergenic
ATTGGACGGTATCAGCCACC+CGG 0.616558 5_1:+4498464 Msa0712670:CDS
GCTAGTAAAGGGTTTATCAG+AGG 0.616669 5_1:-4497419 None:intergenic
AGGGTTCAAGCAGAGGAATG+TGG 0.617736 5_1:+4497575 Msa0712670:CDS
TGGAGAGAGTGAAGGGAACG+TGG 0.618176 5_1:+4497496 Msa0712670:CDS
TTGGACGGTATCAGCCACCC+GGG 0.618733 5_1:+4498465 Msa0712670:CDS
GTCATGGAAAAGGGTTATGG+TGG 0.622098 5_1:+4498620 Msa0712670:CDS
GATTCACTAACCAACAACAA+TGG 0.627276 5_1:+4497371 Msa0712670:CDS
GAGCAGATATTAATATTGGA+CGG 0.627676 5_1:+4498450 Msa0712670:CDS
TGGAGGTACTACATCAACGT+TGG 0.645433 5_1:-4497444 None:intergenic
TATCATCATCATCATGAATG+TGG 0.646416 5_1:+4499306 Msa0712670:three_prime_UTR
AATGCTCGATGCATTGGCGA+CGG 0.648828 5_1:+4499184 Msa0712670:three_prime_UTR
ACGTTGATGTAGTACCTCCA+AGG 0.654374 5_1:+4497447 Msa0712670:CDS
AAATCTTGTTCTCTAATCCG+AGG 0.657767 5_1:-4497746 None:intergenic
ATTTCCAAATGGTGAATCTG+CGG 0.660166 5_1:+4497962 Msa0712670:CDS
ATATTGCTACAAATTTATGG+CGG 0.663837 5_1:-4499161 None:intergenic
TGGATGAGAGTGTTTACACA+AGG 0.666652 5_1:+4497516 Msa0712670:CDS
TGGACGGTTGAACAATTCGA+GGG 0.667400 5_1:+4498566 Msa0712670:CDS
AAGAACATGATTGAAAACGA+TGG 0.668419 5_1:+4497608 Msa0712670:CDS
TCTGAATTACGACTGTCCAA+TGG 0.669531 5_1:+4499068 Msa0712670:CDS
TTCTGTTGAGATACTGAGAG+TGG 0.675907 5_1:-4497251 None:intergenic
TGGACGGTATCAGCCACCCG+GGG 0.707455 5_1:+4498466 Msa0712670:CDS
GGATGAGAGTGTTTACACAA+GGG 0.722988 5_1:+4497517 Msa0712670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTTATAACATAAAAA+AGG + chr5_1:4499213-4499232 Msa0712670:three_prime_UTR 10.0%
!!! CATATTTTATAACATAAAAA+AGG + chr5_1:4499213-4499232 Msa0712670:three_prime_UTR 10.0%
!!! TTTTCATCATTTGTAAATTA+AGG + chr5_1:4498813-4498832 Msa0712670:intron 15.0%
!!! TTATATACTGATTTATATGA+TGG + chr5_1:4499008-4499027 Msa0712670:intron 15.0%
!! ATTATATTGCTACAAATTTA+TGG - chr5_1:4499167-4499186 None:intergenic 15.0%
!!! TTTTCATCATTTGTAAATTA+AGG + chr5_1:4498813-4498832 Msa0712670:intron 15.0%
!!! TTATATACTGATTTATATGA+TGG + chr5_1:4499008-4499027 Msa0712670:intron 15.0%
!! ATTATATTGCTACAAATTTA+TGG - chr5_1:4499167-4499186 None:intergenic 15.0%
!! AATTGCATTCAAAAATATCA+TGG + chr5_1:4497208-4497227 Msa0712670:exon 20.0%
!! ATTGCATTCAAAAATATCAT+GGG + chr5_1:4497209-4497228 Msa0712670:exon 20.0%
!! GAATAATTAGAATTAGTGTT+GGG - chr5_1:4497293-4497312 None:intergenic 20.0%
!! AGAATAATTAGAATTAGTGT+TGG - chr5_1:4497294-4497313 None:intergenic 20.0%
!! TTTGTGATTTATGTTATGTA+AGG + chr5_1:4497867-4497886 Msa0712670:intron 20.0%
!! TTGTGATTTATGTTATGTAA+GGG + chr5_1:4497868-4497887 Msa0712670:intron 20.0%
!! TTCATATATATACTATCTTG+CGG + chr5_1:4498171-4498190 Msa0712670:intron 20.0%
!!! AATAATGGAGTTTATAAAGT+CGG - chr5_1:4498242-4498261 None:intergenic 20.0%
!! TATGATTAACAATCTAATGT+TGG + chr5_1:4498390-4498409 Msa0712670:intron 20.0%
!! AGAAACTATGAGTAATAATT+AGG - chr5_1:4498966-4498985 None:intergenic 20.0%
!! AATTGCATTCAAAAATATCA+TGG + chr5_1:4497208-4497227 Msa0712670:exon 20.0%
!! ATTGCATTCAAAAATATCAT+GGG + chr5_1:4497209-4497228 Msa0712670:exon 20.0%
!! GAATAATTAGAATTAGTGTT+GGG - chr5_1:4497293-4497312 None:intergenic 20.0%
!! AGAATAATTAGAATTAGTGT+TGG - chr5_1:4497294-4497313 None:intergenic 20.0%
!! TTTGTGATTTATGTTATGTA+AGG + chr5_1:4497867-4497886 Msa0712670:intron 20.0%
!! TTGTGATTTATGTTATGTAA+GGG + chr5_1:4497868-4497887 Msa0712670:intron 20.0%
!! TTCATATATATACTATCTTG+CGG + chr5_1:4498171-4498190 Msa0712670:intron 20.0%
!!! AATAATGGAGTTTATAAAGT+CGG - chr5_1:4498242-4498261 None:intergenic 20.0%
!! TATGATTAACAATCTAATGT+TGG + chr5_1:4498390-4498409 Msa0712670:intron 20.0%
!! AGAAACTATGAGTAATAATT+AGG - chr5_1:4498966-4498985 None:intergenic 20.0%
! CTAACAAGAATTATTCTTCT+AGG - chr5_1:4497473-4497492 None:intergenic 25.0%
! AGAATAATTCTTGTTAGACA+TGG + chr5_1:4497476-4497495 Msa0712670:CDS 25.0%
!! TAGTTTTCTGTCTTGTATAT+TGG + chr5_1:4497817-4497836 Msa0712670:intron 25.0%
! GTAAAGTTAATCAACTGATT+AGG + chr5_1:4498094-4498113 Msa0712670:intron 25.0%
!!! TATATGAAGCTTGTTGAAAA+TGG - chr5_1:4498159-4498178 None:intergenic 25.0%
! TCATCGGTCATATTTAATAA+TGG - chr5_1:4498257-4498276 None:intergenic 25.0%
! AATCATACTTGAATATTGCA+AGG - chr5_1:4498377-4498396 None:intergenic 25.0%
! TGGATTTGATATTGATACAT+AGG + chr5_1:4498410-4498429 Msa0712670:intron 25.0%
! CTAAGAGCAGATATTAATAT+TGG + chr5_1:4498446-4498465 Msa0712670:CDS 25.0%
!! TTAGAGTTTTTCTTATGAGA+TGG + chr5_1:4498537-4498556 Msa0712670:CDS 25.0%
! TTCTTATGAGATGGTATAAA+TGG + chr5_1:4498546-4498565 Msa0712670:CDS 25.0%
! TTCCACATTACAAATTTAAC+AGG + chr5_1:4498841-4498860 Msa0712670:intron 25.0%
! TACCTGTTAAATTTGTAATG+TGG - chr5_1:4498846-4498865 None:intergenic 25.0%
! ATATTGCTACAAATTTATGG+CGG - chr5_1:4499164-4499183 None:intergenic 25.0%
! AATTTCAATCATTGTTGTGT+AGG + chr5_1:4499345-4499364 Msa0712670:three_prime_UTR 25.0%
! TTATATTAATCACCATGCTA+AGG + chr5_1:4499395-4499414 Msa0712670:three_prime_UTR 25.0%
! CTAACAAGAATTATTCTTCT+AGG - chr5_1:4497473-4497492 None:intergenic 25.0%
! AGAATAATTCTTGTTAGACA+TGG + chr5_1:4497476-4497495 Msa0712670:CDS 25.0%
!! TAGTTTTCTGTCTTGTATAT+TGG + chr5_1:4497817-4497836 Msa0712670:intron 25.0%
! GTAAAGTTAATCAACTGATT+AGG + chr5_1:4498094-4498113 Msa0712670:intron 25.0%
!!! TATATGAAGCTTGTTGAAAA+TGG - chr5_1:4498159-4498178 None:intergenic 25.0%
! TCATCGGTCATATTTAATAA+TGG - chr5_1:4498257-4498276 None:intergenic 25.0%
! AATCATACTTGAATATTGCA+AGG - chr5_1:4498377-4498396 None:intergenic 25.0%
! TGGATTTGATATTGATACAT+AGG + chr5_1:4498410-4498429 Msa0712670:intron 25.0%
! CTAAGAGCAGATATTAATAT+TGG + chr5_1:4498446-4498465 Msa0712670:CDS 25.0%
!! TTAGAGTTTTTCTTATGAGA+TGG + chr5_1:4498537-4498556 Msa0712670:CDS 25.0%
! TTCTTATGAGATGGTATAAA+TGG + chr5_1:4498546-4498565 Msa0712670:CDS 25.0%
! TTCCACATTACAAATTTAAC+AGG + chr5_1:4498841-4498860 Msa0712670:intron 25.0%
! TACCTGTTAAATTTGTAATG+TGG - chr5_1:4498846-4498865 None:intergenic 25.0%
! ATATTGCTACAAATTTATGG+CGG - chr5_1:4499164-4499183 None:intergenic 25.0%
! AATTTCAATCATTGTTGTGT+AGG + chr5_1:4499345-4499364 Msa0712670:three_prime_UTR 25.0%
! TTATATTAATCACCATGCTA+AGG + chr5_1:4499395-4499414 Msa0712670:three_prime_UTR 25.0%
! TTTATCAGAGGATTTTTCTC+TGG - chr5_1:4497410-4497429 None:intergenic 30.0%
AAGAACATGATTGAAAACGA+TGG + chr5_1:4497608-4497627 Msa0712670:CDS 30.0%
! AAAACGATGGTGATGAAAAT+TGG + chr5_1:4497621-4497640 Msa0712670:CDS 30.0%
TTTATGTGTCTCCATATAGA+AGG + chr5_1:4497654-4497673 Msa0712670:CDS 30.0%
ACAAGACAGAAAACTAAACT+AGG - chr5_1:4497813-4497832 None:intergenic 30.0%
AAAAGAAACGACCATAAAGA+TGG - chr5_1:4497938-4497957 None:intergenic 30.0%
!!! TTCTTTTACCGATTTCCAAA+TGG + chr5_1:4497951-4497970 Msa0712670:CDS 30.0%
GTCGGTTATTATTGTTAGTT+CGG - chr5_1:4498224-4498243 None:intergenic 30.0%
TGACTATAATTGAGGTTCAT+CGG - chr5_1:4498273-4498292 None:intergenic 30.0%
TAAATAAAAGTCTGCGATCA+AGG - chr5_1:4498345-4498364 None:intergenic 30.0%
GAGCAGATATTAATATTGGA+CGG + chr5_1:4498450-4498469 Msa0712670:CDS 30.0%
!! GAAGAATTTTGATGTGAACT+TGG + chr5_1:4498490-4498509 Msa0712670:CDS 30.0%
TATGAGATGGTATAAATGGA+CGG + chr5_1:4498550-4498569 Msa0712670:CDS 30.0%
! AAATGCTGATTGATCAAGAA+TGG + chr5_1:4498922-4498941 Msa0712670:CDS 30.0%
ATATGATGGTCAATTTGTGA+AGG + chr5_1:4499022-4499041 Msa0712670:intron 30.0%
TATCATCATCATCATGAATG+TGG + chr5_1:4499306-4499325 Msa0712670:three_prime_UTR 30.0%
! TTTATCAGAGGATTTTTCTC+TGG - chr5_1:4497410-4497429 None:intergenic 30.0%
AAGAACATGATTGAAAACGA+TGG + chr5_1:4497608-4497627 Msa0712670:CDS 30.0%
! AAAACGATGGTGATGAAAAT+TGG + chr5_1:4497621-4497640 Msa0712670:CDS 30.0%
TTTATGTGTCTCCATATAGA+AGG + chr5_1:4497654-4497673 Msa0712670:CDS 30.0%
ACAAGACAGAAAACTAAACT+AGG - chr5_1:4497813-4497832 None:intergenic 30.0%
AAAAGAAACGACCATAAAGA+TGG - chr5_1:4497938-4497957 None:intergenic 30.0%
!!! TTCTTTTACCGATTTCCAAA+TGG + chr5_1:4497951-4497970 Msa0712670:CDS 30.0%
GTCGGTTATTATTGTTAGTT+CGG - chr5_1:4498224-4498243 None:intergenic 30.0%
TGACTATAATTGAGGTTCAT+CGG - chr5_1:4498273-4498292 None:intergenic 30.0%
TAAATAAAAGTCTGCGATCA+AGG - chr5_1:4498345-4498364 None:intergenic 30.0%
GAGCAGATATTAATATTGGA+CGG + chr5_1:4498450-4498469 Msa0712670:CDS 30.0%
!! GAAGAATTTTGATGTGAACT+TGG + chr5_1:4498490-4498509 Msa0712670:CDS 30.0%
TATGAGATGGTATAAATGGA+CGG + chr5_1:4498550-4498569 Msa0712670:CDS 30.0%
! AAATGCTGATTGATCAAGAA+TGG + chr5_1:4498922-4498941 Msa0712670:CDS 30.0%
ATATGATGGTCAATTTGTGA+AGG + chr5_1:4499022-4499041 Msa0712670:intron 30.0%
TATCATCATCATCATGAATG+TGG + chr5_1:4499306-4499325 Msa0712670:three_prime_UTR 30.0%
! TGTTGGTTAGTGAATCTACA+GGG - chr5_1:4497367-4497386 None:intergenic 35.0%
! TTGTTGGTTAGTGAATCTAC+AGG - chr5_1:4497368-4497387 None:intergenic 35.0%
GATTCACTAACCAACAACAA+TGG + chr5_1:4497371-4497390 Msa0712670:CDS 35.0%
AGAATTATTCTTCTAGGCCT+TGG - chr5_1:4497467-4497486 None:intergenic 35.0%
! CTATTTGTGAGGCCTATTTT+GGG - chr5_1:4497551-4497570 None:intergenic 35.0%
! TCTATTTGTGAGGCCTATTT+TGG - chr5_1:4497552-4497571 None:intergenic 35.0%
AAAATAGGCCTCACAAATAG+AGG + chr5_1:4497551-4497570 Msa0712670:CDS 35.0%
GTTTCAAGAGTCCTTCTATA+TGG - chr5_1:4497668-4497687 None:intergenic 35.0%
GCAATTCTTGAACGTTCAAA+GGG - chr5_1:4497710-4497729 None:intergenic 35.0%
AGCAATTCTTGAACGTTCAA+AGG - chr5_1:4497711-4497730 None:intergenic 35.0%
TTTGAACGTTCAAGAATTGC+TGG + chr5_1:4497710-4497729 Msa0712670:CDS 35.0%
AAATCTTGTTCTCTAATCCG+AGG - chr5_1:4497749-4497768 None:intergenic 35.0%
! CGGATTAGAGAACAAGATTT+CGG + chr5_1:4497749-4497768 Msa0712670:CDS 35.0%
CAGATTCACCATTTGGAAAT+CGG - chr5_1:4497962-4497981 None:intergenic 35.0%
ATTTCCAAATGGTGAATCTG+CGG + chr5_1:4497962-4497981 Msa0712670:CDS 35.0%
GATGTATACGATAGAATCAC+AGG + chr5_1:4497987-4498006 Msa0712670:CDS 35.0%
!! CAACTGATTAGGTTTGTTAG+AGG + chr5_1:4498105-4498124 Msa0712670:intron 35.0%
!! TAGGTTTGTTAGAGGTAGTT+AGG + chr5_1:4498113-4498132 Msa0712670:intron 35.0%
TTATTGTTAGTTCGGCTCAA+TGG - chr5_1:4498216-4498235 None:intergenic 35.0%
AAACATCAGTTGCTATAGAG+AGG - chr5_1:4498667-4498686 None:intergenic 35.0%
TCTCTATAGCAACTGATGTT+TGG + chr5_1:4498666-4498685 Msa0712670:intron 35.0%
ATGTACATGACATTGATACG+TGG - chr5_1:4498758-4498777 None:intergenic 35.0%
GAACAAGAGTTAAGACAGTT+TGG + chr5_1:4498888-4498907 Msa0712670:CDS 35.0%
! TGTGAAGGCATAAATTTGCA+AGG + chr5_1:4499037-4499056 Msa0712670:intron 35.0%
TTCATGAAGATGAGGAAAGA+AGG - chr5_1:4499100-4499119 None:intergenic 35.0%
TTTGCTTCTTCATGAAGATG+AGG - chr5_1:4499108-4499127 None:intergenic 35.0%
CAAACAGAAGCCAACAAAAA+GGG + chr5_1:4499124-4499143 Msa0712670:CDS 35.0%
CAATATAATGCTCGATGCAT+TGG + chr5_1:4499178-4499197 Msa0712670:three_prime_UTR 35.0%
! TGTTGGTTAGTGAATCTACA+GGG - chr5_1:4497367-4497386 None:intergenic 35.0%
! TTGTTGGTTAGTGAATCTAC+AGG - chr5_1:4497368-4497387 None:intergenic 35.0%
GATTCACTAACCAACAACAA+TGG + chr5_1:4497371-4497390 Msa0712670:CDS 35.0%
AGAATTATTCTTCTAGGCCT+TGG - chr5_1:4497467-4497486 None:intergenic 35.0%
! CTATTTGTGAGGCCTATTTT+GGG - chr5_1:4497551-4497570 None:intergenic 35.0%
! TCTATTTGTGAGGCCTATTT+TGG - chr5_1:4497552-4497571 None:intergenic 35.0%
AAAATAGGCCTCACAAATAG+AGG + chr5_1:4497551-4497570 Msa0712670:CDS 35.0%
GTTTCAAGAGTCCTTCTATA+TGG - chr5_1:4497668-4497687 None:intergenic 35.0%
GCAATTCTTGAACGTTCAAA+GGG - chr5_1:4497710-4497729 None:intergenic 35.0%
AGCAATTCTTGAACGTTCAA+AGG - chr5_1:4497711-4497730 None:intergenic 35.0%
TTTGAACGTTCAAGAATTGC+TGG + chr5_1:4497710-4497729 Msa0712670:CDS 35.0%
AAATCTTGTTCTCTAATCCG+AGG - chr5_1:4497749-4497768 None:intergenic 35.0%
! CGGATTAGAGAACAAGATTT+CGG + chr5_1:4497749-4497768 Msa0712670:CDS 35.0%
CAGATTCACCATTTGGAAAT+CGG - chr5_1:4497962-4497981 None:intergenic 35.0%
ATTTCCAAATGGTGAATCTG+CGG + chr5_1:4497962-4497981 Msa0712670:CDS 35.0%
GATGTATACGATAGAATCAC+AGG + chr5_1:4497987-4498006 Msa0712670:CDS 35.0%
!! CAACTGATTAGGTTTGTTAG+AGG + chr5_1:4498105-4498124 Msa0712670:intron 35.0%
!! TAGGTTTGTTAGAGGTAGTT+AGG + chr5_1:4498113-4498132 Msa0712670:intron 35.0%
TTATTGTTAGTTCGGCTCAA+TGG - chr5_1:4498216-4498235 None:intergenic 35.0%
AAACATCAGTTGCTATAGAG+AGG - chr5_1:4498667-4498686 None:intergenic 35.0%
TCTCTATAGCAACTGATGTT+TGG + chr5_1:4498666-4498685 Msa0712670:intron 35.0%
ATGTACATGACATTGATACG+TGG - chr5_1:4498758-4498777 None:intergenic 35.0%
GAACAAGAGTTAAGACAGTT+TGG + chr5_1:4498888-4498907 Msa0712670:CDS 35.0%
! TGTGAAGGCATAAATTTGCA+AGG + chr5_1:4499037-4499056 Msa0712670:intron 35.0%
TTCATGAAGATGAGGAAAGA+AGG - chr5_1:4499100-4499119 None:intergenic 35.0%
TTTGCTTCTTCATGAAGATG+AGG - chr5_1:4499108-4499127 None:intergenic 35.0%
CAAACAGAAGCCAACAAAAA+GGG + chr5_1:4499124-4499143 Msa0712670:CDS 35.0%
CAATATAATGCTCGATGCAT+TGG + chr5_1:4499178-4499197 Msa0712670:three_prime_UTR 35.0%
! TGAGAGTGGTAGTGATGTTA+TGG - chr5_1:4497240-4497259 None:intergenic 40.0%
TTCTGTTGAGATACTGAGAG+TGG - chr5_1:4497254-4497273 None:intergenic 40.0%
!!! CTTTTTGGCTGTGACAACAT+TGG - chr5_1:4497343-4497362 None:intergenic 40.0%
! GTGAATCTACAGGGTCTTTT+TGG - chr5_1:4497358-4497377 None:intergenic 40.0%
!! AGGATTTTTCTCTGGAAACC+TGG - chr5_1:4497402-4497421 None:intergenic 40.0%
GCTAGTAAAGGGTTTATCAG+AGG - chr5_1:4497422-4497441 None:intergenic 40.0%
ATTATTCTTCTAGGCCTTGG+AGG - chr5_1:4497464-4497483 None:intergenic 40.0%
TTAGACATGGAGAGAGTGAA+GGG + chr5_1:4497489-4497508 Msa0712670:CDS 40.0%
!! TGGATGAGAGTGTTTACACA+AGG + chr5_1:4497516-4497535 Msa0712670:CDS 40.0%
!! GGATGAGAGTGTTTACACAA+GGG + chr5_1:4497517-4497536 Msa0712670:CDS 40.0%
AACCTCAATTATAGTCACGC+TGG + chr5_1:4498276-4498295 Msa0712670:intron 40.0%
ACCTCAATTATAGTCACGCT+GGG + chr5_1:4498277-4498296 Msa0712670:intron 40.0%
ACATCAAAATTCTTCTCCCC+GGG - chr5_1:4498485-4498504 None:intergenic 40.0%
CACATCAAAATTCTTCTCCC+CGG - chr5_1:4498486-4498505 None:intergenic 40.0%
! TTCGAGGGTCTCAACAATTT+TGG + chr5_1:4498581-4498600 Msa0712670:CDS 40.0%
!! GGTCTCAACAATTTTGGCAA+TGG + chr5_1:4498587-4498606 Msa0712670:CDS 40.0%
!! CTCAACAATTTTGGCAATGG+AGG + chr5_1:4498590-4498609 Msa0712670:CDS 40.0%
CTTGTCATGGAAAAGGGTTA+TGG + chr5_1:4498617-4498636 Msa0712670:CDS 40.0%
AGCAACTGATGTTTGGTATC+TGG + chr5_1:4498673-4498692 Msa0712670:intron 40.0%
TCTGAATTACGACTGTCCAA+TGG + chr5_1:4499068-4499087 Msa0712670:CDS 40.0%
GGAAAGAAGGAATTCACCAT+TGG - chr5_1:4499087-4499106 None:intergenic 40.0%
GCAAACAGAAGCCAACAAAA+AGG + chr5_1:4499123-4499142 Msa0712670:CDS 40.0%
! CGATTCACTACCCTTTTTGT+TGG - chr5_1:4499137-4499156 None:intergenic 40.0%
! TGAGAGTGGTAGTGATGTTA+TGG - chr5_1:4497240-4497259 None:intergenic 40.0%
TTCTGTTGAGATACTGAGAG+TGG - chr5_1:4497254-4497273 None:intergenic 40.0%
!!! CTTTTTGGCTGTGACAACAT+TGG - chr5_1:4497343-4497362 None:intergenic 40.0%
! GTGAATCTACAGGGTCTTTT+TGG - chr5_1:4497358-4497377 None:intergenic 40.0%
!! AGGATTTTTCTCTGGAAACC+TGG - chr5_1:4497402-4497421 None:intergenic 40.0%
GCTAGTAAAGGGTTTATCAG+AGG - chr5_1:4497422-4497441 None:intergenic 40.0%
ATTATTCTTCTAGGCCTTGG+AGG - chr5_1:4497464-4497483 None:intergenic 40.0%
TTAGACATGGAGAGAGTGAA+GGG + chr5_1:4497489-4497508 Msa0712670:CDS 40.0%
!! TGGATGAGAGTGTTTACACA+AGG + chr5_1:4497516-4497535 Msa0712670:CDS 40.0%
!! GGATGAGAGTGTTTACACAA+GGG + chr5_1:4497517-4497536 Msa0712670:CDS 40.0%
AACCTCAATTATAGTCACGC+TGG + chr5_1:4498276-4498295 Msa0712670:intron 40.0%
ACCTCAATTATAGTCACGCT+GGG + chr5_1:4498277-4498296 Msa0712670:intron 40.0%
ACATCAAAATTCTTCTCCCC+GGG - chr5_1:4498485-4498504 None:intergenic 40.0%
CACATCAAAATTCTTCTCCC+CGG - chr5_1:4498486-4498505 None:intergenic 40.0%
! TTCGAGGGTCTCAACAATTT+TGG + chr5_1:4498581-4498600 Msa0712670:CDS 40.0%
!! GGTCTCAACAATTTTGGCAA+TGG + chr5_1:4498587-4498606 Msa0712670:CDS 40.0%
!! CTCAACAATTTTGGCAATGG+AGG + chr5_1:4498590-4498609 Msa0712670:CDS 40.0%
CTTGTCATGGAAAAGGGTTA+TGG + chr5_1:4498617-4498636 Msa0712670:CDS 40.0%
AGCAACTGATGTTTGGTATC+TGG + chr5_1:4498673-4498692 Msa0712670:intron 40.0%
TCTGAATTACGACTGTCCAA+TGG + chr5_1:4499068-4499087 Msa0712670:CDS 40.0%
GGAAAGAAGGAATTCACCAT+TGG - chr5_1:4499087-4499106 None:intergenic 40.0%
GCAAACAGAAGCCAACAAAA+AGG + chr5_1:4499123-4499142 Msa0712670:CDS 40.0%
! CGATTCACTACCCTTTTTGT+TGG - chr5_1:4499137-4499156 None:intergenic 40.0%
CCTGGTATGTCCATTGTTGT+TGG - chr5_1:4497384-4497403 None:intergenic 45.0%
CCAACAACAATGGACATACC+AGG + chr5_1:4497381-4497400 Msa0712670:CDS 45.0%
CAACGTTGGAGGCTAGTAAA+GGG - chr5_1:4497433-4497452 None:intergenic 45.0%
TCAACGTTGGAGGCTAGTAA+AGG - chr5_1:4497434-4497453 None:intergenic 45.0%
AGGTACTACATCAACGTTGG+AGG - chr5_1:4497444-4497463 None:intergenic 45.0%
!! TGGAGGTACTACATCAACGT+TGG - chr5_1:4497447-4497466 None:intergenic 45.0%
ACGTTGATGTAGTACCTCCA+AGG + chr5_1:4497447-4497466 Msa0712670:CDS 45.0%
GTTAGACATGGAGAGAGTGA+AGG + chr5_1:4497488-4497507 Msa0712670:CDS 45.0%
! AGGGTACCTGATCCCAAAAT+AGG + chr5_1:4497536-4497555 Msa0712670:CDS 45.0%
TAGGCCTCACAAATAGAGGT+AGG + chr5_1:4497555-4497574 Msa0712670:CDS 45.0%
AGGCCTCACAAATAGAGGTA+GGG + chr5_1:4497556-4497575 Msa0712670:CDS 45.0%
GAACCCTACCTCTATTTGTG+AGG - chr5_1:4497562-4497581 None:intergenic 45.0%
AAAGCGCAACGCCATCTTTA+TGG + chr5_1:4497924-4497943 Msa0712670:CDS 45.0%
GGCTCAATGGCAACTAAACA+TGG - chr5_1:4498203-4498222 None:intergenic 45.0%
CCTCAATTATAGTCACGCTG+GGG + chr5_1:4498278-4498297 Msa0712670:intron 45.0%
AACTTGGTCATCGTGTCACA+TGG + chr5_1:4498506-4498525 Msa0712670:CDS 45.0%
ATGGACGGTTGAACAATTCG+AGG + chr5_1:4498565-4498584 Msa0712670:CDS 45.0%
TGGACGGTTGAACAATTCGA+GGG + chr5_1:4498566-4498585 Msa0712670:CDS 45.0%
GTCATGGAAAAGGGTTATGG+TGG + chr5_1:4498620-4498639 Msa0712670:CDS 45.0%
! TGGAAAAGGGTTATGGTGGA+AGG + chr5_1:4498624-4498643 Msa0712670:CDS 45.0%
CAGTCGTAATTCAGATCAGC+AGG - chr5_1:4499063-4499082 None:intergenic 45.0%
CCTGGTATGTCCATTGTTGT+TGG - chr5_1:4497384-4497403 None:intergenic 45.0%
CCAACAACAATGGACATACC+AGG + chr5_1:4497381-4497400 Msa0712670:CDS 45.0%
CAACGTTGGAGGCTAGTAAA+GGG - chr5_1:4497433-4497452 None:intergenic 45.0%
TCAACGTTGGAGGCTAGTAA+AGG - chr5_1:4497434-4497453 None:intergenic 45.0%
AGGTACTACATCAACGTTGG+AGG - chr5_1:4497444-4497463 None:intergenic 45.0%
!! TGGAGGTACTACATCAACGT+TGG - chr5_1:4497447-4497466 None:intergenic 45.0%
ACGTTGATGTAGTACCTCCA+AGG + chr5_1:4497447-4497466 Msa0712670:CDS 45.0%
GTTAGACATGGAGAGAGTGA+AGG + chr5_1:4497488-4497507 Msa0712670:CDS 45.0%
! AGGGTACCTGATCCCAAAAT+AGG + chr5_1:4497536-4497555 Msa0712670:CDS 45.0%
TAGGCCTCACAAATAGAGGT+AGG + chr5_1:4497555-4497574 Msa0712670:CDS 45.0%
AGGCCTCACAAATAGAGGTA+GGG + chr5_1:4497556-4497575 Msa0712670:CDS 45.0%
GAACCCTACCTCTATTTGTG+AGG - chr5_1:4497562-4497581 None:intergenic 45.0%
AAAGCGCAACGCCATCTTTA+TGG + chr5_1:4497924-4497943 Msa0712670:CDS 45.0%
GGCTCAATGGCAACTAAACA+TGG - chr5_1:4498203-4498222 None:intergenic 45.0%
CCTCAATTATAGTCACGCTG+GGG + chr5_1:4498278-4498297 Msa0712670:intron 45.0%
AACTTGGTCATCGTGTCACA+TGG + chr5_1:4498506-4498525 Msa0712670:CDS 45.0%
ATGGACGGTTGAACAATTCG+AGG + chr5_1:4498565-4498584 Msa0712670:CDS 45.0%
TGGACGGTTGAACAATTCGA+GGG + chr5_1:4498566-4498585 Msa0712670:CDS 45.0%
GTCATGGAAAAGGGTTATGG+TGG + chr5_1:4498620-4498639 Msa0712670:CDS 45.0%
! TGGAAAAGGGTTATGGTGGA+AGG + chr5_1:4498624-4498643 Msa0712670:CDS 45.0%
CAGTCGTAATTCAGATCAGC+AGG - chr5_1:4499063-4499082 None:intergenic 45.0%
!!! GTGAGGCCTATTTTGGGATC+AGG - chr5_1:4497545-4497564 None:intergenic 50.0%
TAGAGGTAGGGTTCAAGCAG+AGG + chr5_1:4497568-4497587 Msa0712670:CDS 50.0%
AGGGTTCAAGCAGAGGAATG+TGG + chr5_1:4497575-4497594 Msa0712670:CDS 50.0%
CTGGATTCAGAGAAGAGCCT+CGG + chr5_1:4497729-4497748 Msa0712670:CDS 50.0%
TCAGCCGCAGATTCACCATT+TGG - chr5_1:4497969-4497988 None:intergenic 50.0%
CCCCAGCGTGACTATAATTG+AGG - chr5_1:4498281-4498300 None:intergenic 50.0%
TCAAAATTCTTCTCCCCGGG+TGG - chr5_1:4498482-4498501 None:intergenic 50.0%
AGGCGAGCTTGTCATGGAAA+AGG + chr5_1:4498610-4498629 Msa0712670:CDS 50.0%
GGCGAGCTTGTCATGGAAAA+GGG + chr5_1:4498611-4498630 Msa0712670:CDS 50.0%
! AATGCTCGATGCATTGGCGA+CGG + chr5_1:4499184-4499203 Msa0712670:three_prime_UTR 50.0%
!!! GTGAGGCCTATTTTGGGATC+AGG - chr5_1:4497545-4497564 None:intergenic 50.0%
TAGAGGTAGGGTTCAAGCAG+AGG + chr5_1:4497568-4497587 Msa0712670:CDS 50.0%
AGGGTTCAAGCAGAGGAATG+TGG + chr5_1:4497575-4497594 Msa0712670:CDS 50.0%
CTGGATTCAGAGAAGAGCCT+CGG + chr5_1:4497729-4497748 Msa0712670:CDS 50.0%
TCAGCCGCAGATTCACCATT+TGG - chr5_1:4497969-4497988 None:intergenic 50.0%
CCCCAGCGTGACTATAATTG+AGG - chr5_1:4498281-4498300 None:intergenic 50.0%
TCAAAATTCTTCTCCCCGGG+TGG - chr5_1:4498482-4498501 None:intergenic 50.0%
AGGCGAGCTTGTCATGGAAA+AGG + chr5_1:4498610-4498629 Msa0712670:CDS 50.0%
GGCGAGCTTGTCATGGAAAA+GGG + chr5_1:4498611-4498630 Msa0712670:CDS 50.0%
! AATGCTCGATGCATTGGCGA+CGG + chr5_1:4499184-4499203 Msa0712670:three_prime_UTR 50.0%
TGGAGAGAGTGAAGGGAACG+TGG + chr5_1:4497496-4497515 Msa0712670:CDS 55.0%
! GCTGGGGATTGCAGTCTTGT+AGG + chr5_1:4498294-4498313 Msa0712670:intron 55.0%
ATTGGACGGTATCAGCCACC+CGG + chr5_1:4498464-4498483 Msa0712670:CDS 55.0%
CAATGGAGGCGAGCTTGTCA+TGG + chr5_1:4498604-4498623 Msa0712670:CDS 55.0%
TGGAGAGAGTGAAGGGAACG+TGG + chr5_1:4497496-4497515 Msa0712670:CDS 55.0%
! GCTGGGGATTGCAGTCTTGT+AGG + chr5_1:4498294-4498313 Msa0712670:intron 55.0%
ATTGGACGGTATCAGCCACC+CGG + chr5_1:4498464-4498483 Msa0712670:CDS 55.0%
CAATGGAGGCGAGCTTGTCA+TGG + chr5_1:4498604-4498623 Msa0712670:CDS 55.0%
TTGGACGGTATCAGCCACCC+GGG + chr5_1:4498465-4498484 Msa0712670:CDS 60.0%
TTGGACGGTATCAGCCACCC+GGG + chr5_1:4498465-4498484 Msa0712670:CDS 60.0%
TGGACGGTATCAGCCACCCG+GGG + chr5_1:4498466-4498485 Msa0712670:CDS 65.0%
TGGACGGTATCAGCCACCCG+GGG + chr5_1:4498466-4498485 Msa0712670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4497171 4499422 4497171 ID=Msa0712670;Name=Msa0712670
chr5_1 mRNA 4497171 4499422 4497171 ID=Msa0712670-mRNA-1;Parent=Msa0712670;Name=Msa0712670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|5|273|354
chr5_1 exon 4497171 4497770 4497171 ID=Msa0712670-mRNA-1:exon:1868;Parent=Msa0712670-mRNA-1
chr5_1 exon 4497889 4498008 4497889 ID=Msa0712670-mRNA-1:exon:1869;Parent=Msa0712670-mRNA-1
chr5_1 exon 4498432 4498645 4498432 ID=Msa0712670-mRNA-1:exon:1870;Parent=Msa0712670-mRNA-1
chr5_1 exon 4498863 4498943 4498863 ID=Msa0712670-mRNA-1:exon:1871;Parent=Msa0712670-mRNA-1
chr5_1 exon 4499044 4499422 4499044 ID=Msa0712670-mRNA-1:exon:1872;Parent=Msa0712670-mRNA-1
chr5_1 five_prime_UTR 4497171 4497226 4497171 ID=Msa0712670-mRNA-1:five_prime_utr;Parent=Msa0712670-mRNA-1
chr5_1 CDS 4497227 4497770 4497227 ID=Msa0712670-mRNA-1:cds;Parent=Msa0712670-mRNA-1
chr5_1 CDS 4497889 4498008 4497889 ID=Msa0712670-mRNA-1:cds;Parent=Msa0712670-mRNA-1
chr5_1 CDS 4498432 4498645 4498432 ID=Msa0712670-mRNA-1:cds;Parent=Msa0712670-mRNA-1
chr5_1 CDS 4498863 4498943 4498863 ID=Msa0712670-mRNA-1:cds;Parent=Msa0712670-mRNA-1
chr5_1 CDS 4499044 4499149 4499044 ID=Msa0712670-mRNA-1:cds;Parent=Msa0712670-mRNA-1
chr5_1 three_prime_UTR 4499150 4499422 4499150 ID=Msa0712670-mRNA-1:three_prime_utr;Parent=Msa0712670-mRNA-1
Gene Sequence

>Msa0712670

ATGGGCATTGCCATAACATCACTACCACTCTCAGTATCTCAACAGAAACATCTTAAAATCAAACCCAACACTAATTCTAATTATTCTAAGACTAACAACACATACTTACTAATCCAATGTTGTCACAGCCAAAAAGACCCTGTAGATTCACTAACCAACAACAATGGACATACCAGGTTTCCAGAGAAAAATCCTCTGATAAACCCTTTACTAGCCTCCAACGTTGATGTAGTACCTCCAAGGCCTAGAAGAATAATTCTTGTTAGACATGGAGAGAGTGAAGGGAACGTGGATGAGAGTGTTTACACAAGGGTACCTGATCCCAAAATAGGCCTCACAAATAGAGGTAGGGTTCAAGCAGAGGAATGTGGACAAAGAATCAAGAACATGATTGAAAACGATGGTGATGAAAATTGGCAACTCTACTTTTATGTGTCTCCATATAGAAGGACTCTTGAAACTTTGCAAAGCTTAGCTCGTCCCTTTGAACGTTCAAGAATTGCTGGATTCAGAGAAGAGCCTCGGATTAGAGAACAAGATTTCGGGAATTTTCAAAATAGAGAGTTGATGAAAGTTGAAAAAGCGCAACGCCATCTTTATGGTCGTTTCTTTTACCGATTTCCAAATGGTGAATCTGCGGCTGATGTATACGATAGAATCACAGGATTTAGAGAAACACTAAGAGCAGATATTAATATTGGACGGTATCAGCCACCCGGGGAGAAGAATTTTGATGTGAACTTGGTCATCGTGTCACATGGTTTAACGCTTAGAGTTTTTCTTATGAGATGGTATAAATGGACGGTTGAACAATTCGAGGGTCTCAACAATTTTGGCAATGGAGGCGAGCTTGTCATGGAAAAGGGTTATGGTGGAAGGTATAGCTTATCAATGCATCATGATGAACAAGAGTTAAGACAGTTTGGATTGACTGATGAAATGCTGATTGATCAAGAATGGCATAAATTTGCAAGGCCTGCTGATCTGAATTACGACTGTCCAATGGTGAATTCCTTCTTTCCTCATCTTCATGAAGAAGCAAACAGAAGCCAACAAAAAGGGTAG

Protein sequence

>Msa0712670

MGIAITSLPLSVSQQKHLKIKPNTNSNYSKTNNTYLLIQCCHSQKDPVDSLTNNNGHTRFPEKNPLINPLLASNVDVVPPRPRRIILVRHGESEGNVDESVYTRVPDPKIGLTNRGRVQAEECGQRIKNMIENDGDENWQLYFYVSPYRRTLETLQSLARPFERSRIAGFREEPRIREQDFGNFQNRELMKVEKAQRHLYGRFFYRFPNGESAADVYDRITGFRETLRADINIGRYQPPGEKNFDVNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNFGNGGELVMEKGYGGRYSLSMHHDEQELRQFGLTDEMLIDQEWHKFARPADLNYDCPMVNSFFPHLHEEANRSQQKG*