AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTGTTGTGAAGGCTTC+TGG 0.198643 4_2:+10995804 Msa0588600:exon
ATCAGGAATCAGGAACATTT+AGG 0.269019 4_2:-10995752 None:intergenic
TTGCAGCTGTAGTAGCGCTT+TGG 0.279539 4_2:+10996034 Msa0588600:three_prime_UTR
CAAATCAACTTCAGATATCT+TGG 0.295889 4_2:+10997813 Msa0588600:three_prime_UTR
GAGGACCGGTTAGGACTATT+TGG 0.304471 4_2:+10996003 Msa0588600:three_prime_UTR
TGCAGCTGTAGTAGCGCTTT+GGG 0.308730 4_2:+10996035 Msa0588600:three_prime_UTR
CGGTTAGGACTATTTGGTTT+GGG 0.326107 4_2:+10996009 Msa0588600:three_prime_UTR
TCTCCCTGTGATTGAAAATC+AGG 0.327406 4_2:-10995769 None:intergenic
AAGTTGATTTGTTCAAGATT+TGG 0.346842 4_2:-10997801 None:intergenic
CCGATTTCGTTGGAACTCAT+TGG 0.355490 4_2:+10996611 Msa0588600:three_prime_UTR
CCGGTTAGGACTATTTGGTT+TGG 0.357509 4_2:+10996008 Msa0588600:three_prime_UTR
TCCAACGAAATCGGGATAAC+TGG 0.360832 4_2:-10996602 None:intergenic
CCAATGAGTTCCAACGAAAT+CGG 0.370316 4_2:-10996611 None:intergenic
GTGATTGAAAATCAGGAATC+AGG 0.379791 4_2:-10995762 None:intergenic
TCAGGAATCAGGAACATTTA+GGG 0.393722 4_2:-10995751 None:intergenic
CCAGAAGCCTTCACAACAAA+TGG 0.404317 4_2:-10995804 None:intergenic
GATATAAATGCTTACCGGTC+AGG 0.421505 4_2:-10997012 None:intergenic
CAATGAGTTCCAACGAAATC+GGG 0.452781 4_2:-10996610 None:intergenic
ATCTCTTATTCAAGCCTGAC+CGG 0.490702 4_2:+10996998 Msa0588600:three_prime_UTR
AATAGTCCTAACCGGTCCTC+AGG 0.492618 4_2:-10996000 None:intergenic
AAATCAACTTCAGATATCTT+GGG 0.494856 4_2:+10997814 Msa0588600:three_prime_UTR
GCCAGTTATCCCGATTTCGT+TGG 0.513391 4_2:+10996601 Msa0588600:three_prime_UTR
AGTGGAAGTAATCAAATCAA+TGG 0.518039 4_2:-10995695 None:intergenic
TAACGTTCCATTTGTTGTGA+AGG 0.519833 4_2:+10995797 Msa0588600:CDS
CCAAACCAAATAGTCCTAAC+CGG 0.525229 4_2:-10996008 None:intergenic
ATTATCAGGGTCAACAAAGT+TGG 0.527109 4_2:+10998304 Msa0588600:intron
GATAAACCTGAGGACCGGTT+AGG 0.533709 4_2:+10995994 Msa0588600:three_prime_UTR
TAAGACACATCAGCAGAAAG+TGG 0.534759 4_2:-10995713 None:intergenic
GATAACTGGCAATTTGTCAA+TGG 0.540765 4_2:-10996588 None:intergenic
GAGTTGATTCATGCCTCACA+AGG 0.563819 4_2:+10998340 Msa0588600:three_prime_UTR
GGCATCAACAAATTTGATAG+CGG 0.597711 4_2:+10996056 Msa0588600:three_prime_UTR
CTTGAATAAGAGATAGCGAT+AGG 0.600486 4_2:-10996989 None:intergenic
GTTGATTCATGCCTCACAAG+GGG 0.633992 4_2:+10998342 Msa0588600:three_prime_UTR
AGTGGGATAAACCTGAGGAC+CGG 0.646928 4_2:+10995989 Msa0588600:intron
AGTTGATTCATGCCTCACAA+GGG 0.647273 4_2:+10998341 Msa0588600:three_prime_UTR
TTGATTCATGCCTCACAAGG+GGG 0.718663 4_2:+10998343 Msa0588600:three_prime_UTR
TAAACAGTGGGATAAACCTG+AGG 0.721610 4_2:+10995984 Msa0588600:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGACTATTTTTTTTCAT+GGG - chr4_2:10996512-10996531 None:intergenic 15.0%
!!! TTAAAGACTATTTTTTTTCA+TGG - chr4_2:10996513-10996532 None:intergenic 15.0%
!!! AAGTATTGAAGAAAAAAATA+TGG - chr4_2:10996705-10996724 None:intergenic 15.0%
!!! ATTATAGTTTCTCTAATTTT+TGG - chr4_2:10996826-10996845 None:intergenic 15.0%
!!! TTTCTTTTCTTTAATTACTA+TGG - chr4_2:10997165-10997184 None:intergenic 15.0%
!!! AATAAATAGTTTTTTTGTCA+AGG + chr4_2:10997324-10997343 Msa0588600:intron 15.0%
!!! ATAAATAGTTTTTTTGTCAA+GGG + chr4_2:10997325-10997344 Msa0588600:intron 15.0%
!! GAACTGAAAAATATAAATAA+GGG - chr4_2:10997485-10997504 None:intergenic 15.0%
!! AGAACTGAAAAATATAAATA+AGG - chr4_2:10997486-10997505 None:intergenic 15.0%
!!! TTCTTTTTAAAAATGTAATC+TGG - chr4_2:10998212-10998231 None:intergenic 15.0%
!!! GATTACATTTTTAAAAAGAA+AGG + chr4_2:10998212-10998231 Msa0588600:intron 15.0%
!!! TTTTTTTCATGGGAAAAAAA+AGG - chr4_2:10996502-10996521 None:intergenic 20.0%
!! AGAAAAAATCAAAATCAGAA+TGG - chr4_2:10996549-10996568 None:intergenic 20.0%
!! TAAATAAGGGAAAAATATAG+TGG - chr4_2:10997472-10997491 None:intergenic 20.0%
!! TTGAATATGTTATTGATACA+GGG + chr4_2:10997768-10997787 Msa0588600:intron 20.0%
!! AAATGTATAAATTTGCAGTA+TGG - chr4_2:10998243-10998262 None:intergenic 20.0%
!! AGATTAATCAAATCAAGTTT+AGG - chr4_2:10998276-10998295 None:intergenic 20.0%
!! TAATCTTTCAAACTATTATC+AGG + chr4_2:10998290-10998309 Msa0588600:intron 20.0%
!! AATCTTTCAAACTATTATCA+GGG + chr4_2:10998291-10998310 Msa0588600:intron 20.0%
!!! TCTCTTTTTTAAGAAAGAGA+CGG + chr4_2:10995919-10995938 Msa0588600:intron 25.0%
! TTTGTTGATGTTTAAACAGT+GGG + chr4_2:10995972-10995991 Msa0588600:intron 25.0%
!!! AGAATTTTAACCGAACTTTA+AGG + chr4_2:10996126-10996145 Msa0588600:intron 25.0%
! AGAAAAAAGATGAGATAAAG+TGG - chr4_2:10996206-10996225 None:intergenic 25.0%
!! TTTTACATTAGGGTTTCTTT+GGG - chr4_2:10996339-10996358 None:intergenic 25.0%
!! TACTACACAGTTTTACATTA+GGG - chr4_2:10996349-10996368 None:intergenic 25.0%
!! TTACTACACAGTTTTACATT+AGG - chr4_2:10996350-10996369 None:intergenic 25.0%
! ATATTTGACCTTGAAATACT+CGG - chr4_2:10996395-10996414 None:intergenic 25.0%
!! TTCTGTGATATTTTGTGTAT+AGG + chr4_2:10996565-10996584 Msa0588600:intron 25.0%
!!! TTTCTCTAATTTTTGGAACA+GGG - chr4_2:10996819-10996838 None:intergenic 25.0%
! TGCAAAAACAAAAACAAAGT+CGG - chr4_2:10996885-10996904 None:intergenic 25.0%
!!! TTTGTTTTTGTTTTTGCAAG+AGG + chr4_2:10996887-10996906 Msa0588600:intron 25.0%
!!! TTGTTTTTGTTTTTGCAAGA+GGG + chr4_2:10996888-10996907 Msa0588600:intron 25.0%
!! AATTTCTTTTTCTGTTTCAG+TGG + chr4_2:10996962-10996981 Msa0588600:intron 25.0%
! AAAGTGATATAAATGCTTAC+CGG - chr4_2:10997020-10997039 None:intergenic 25.0%
! TTCTTTAATTACTATGGCTA+TGG - chr4_2:10997159-10997178 None:intergenic 25.0%
!! TTTTTCTCTCACTAGTTATT+TGG - chr4_2:10997406-10997425 None:intergenic 25.0%
! AGCTAATTACTAACAACTTA+TGG - chr4_2:10997648-10997667 None:intergenic 25.0%
! CTTGAATATGTTATTGATAC+AGG + chr4_2:10997767-10997786 Msa0588600:intron 25.0%
!!! AAGTTGATTTGTTCAAGATT+TGG - chr4_2:10997804-10997823 None:intergenic 25.0%
! AAATCAACTTCAGATATCTT+GGG + chr4_2:10997814-10997833 Msa0588600:three_prime_UTR 25.0%
!! TTTTCAACTTTTGTACACAA+AGG - chr4_2:10997972-10997991 None:intergenic 25.0%
AGTGGAAGTAATCAAATCAA+TGG - chr4_2:10995698-10995717 None:intergenic 30.0%
! ATTCCTGATTTTCAATCACA+GGG + chr4_2:10995766-10995785 Msa0588600:CDS 30.0%
CAAAAAACAAGCAGAAACTT+AGG - chr4_2:10995952-10995971 None:intergenic 30.0%
! GTTTGTTGATGTTTAAACAG+TGG + chr4_2:10995971-10995990 Msa0588600:intron 30.0%
CCAAACATAACCTTAAAGTT+CGG - chr4_2:10996139-10996158 None:intergenic 30.0%
!! CGAACTTTAAGGTTATGTTT+GGG + chr4_2:10996137-10996156 Msa0588600:intron 30.0%
!! TATTTTGCTTCCACTGATTA+AGG + chr4_2:10996262-10996281 Msa0588600:intron 30.0%
! GTTTTACATTAGGGTTTCTT+TGG - chr4_2:10996340-10996359 None:intergenic 30.0%
CTCAATAGCTATATTGACAA+AGG - chr4_2:10996473-10996492 None:intergenic 30.0%
CTTTGTCAATATAGCTATTG+AGG + chr4_2:10996471-10996490 Msa0588600:intron 30.0%
ATCAAAATCAGAATGGAAGA+GGG - chr4_2:10996542-10996561 None:intergenic 30.0%
AATCAAAATCAGAATGGAAG+AGG - chr4_2:10996543-10996562 None:intergenic 30.0%
ATAGCCAAATAAATCTCACT+TGG + chr4_2:10996768-10996787 Msa0588600:intron 30.0%
TAGCCAAATAAATCTCACTT+GGG + chr4_2:10996769-10996788 Msa0588600:intron 30.0%
!!! TTCTCTAATTTTTGGAACAG+GGG - chr4_2:10996818-10996837 None:intergenic 30.0%
!!! GTTTCTCTAATTTTTGGAAC+AGG - chr4_2:10996820-10996839 None:intergenic 30.0%
!! GATGAATTGATGGATTGATT+TGG + chr4_2:10996915-10996934 Msa0588600:intron 30.0%
TTTCTCTCAAACCAATCAAA+GGG - chr4_2:10997220-10997239 None:intergenic 30.0%
ATTTCTCTCAAACCAATCAA+AGG - chr4_2:10997221-10997240 None:intergenic 30.0%
! AAGAGAGTGTAAAGAGATAA+AGG - chr4_2:10997378-10997397 None:intergenic 30.0%
CAAATCAACTTCAGATATCT+TGG + chr4_2:10997813-10997832 Msa0588600:three_prime_UTR 30.0%
!! TCACATTCTGGAGTAAAATT+CGG - chr4_2:10997856-10997875 None:intergenic 30.0%
!! TTTTAAGTGCAGATTATCAG+CGG + chr4_2:10997876-10997895 Msa0588600:intron 30.0%
ACTTGACTTCATTTAAGTCA+AGG - chr4_2:10998101-10998120 None:intergenic 30.0%
TGAAATCAGCTTATCCTTAA+TGG + chr4_2:10998135-10998154 Msa0588600:intron 30.0%
AAGAGGTTATCTTACCATTA+AGG - chr4_2:10998152-10998171 None:intergenic 30.0%
AATTAGCATGAGATCACATA+AGG - chr4_2:10998181-10998200 None:intergenic 30.0%
TATGTGATCTCATGCTAATT+AGG + chr4_2:10998181-10998200 Msa0588600:intron 30.0%
!! TGCTCATTTTTGAACTTCAG+TGG + chr4_2:10995666-10995685 Msa0588600:five_prime_UTR 35.0%
TCAGGAATCAGGAACATTTA+GGG - chr4_2:10995754-10995773 None:intergenic 35.0%
ATCAGGAATCAGGAACATTT+AGG - chr4_2:10995755-10995774 None:intergenic 35.0%
GTGATTGAAAATCAGGAATC+AGG - chr4_2:10995765-10995784 None:intergenic 35.0%
! GATTCCTGATTTTCAATCAC+AGG + chr4_2:10995765-10995784 Msa0588600:CDS 35.0%
!! TAACGTTCCATTTGTTGTGA+AGG + chr4_2:10995797-10995816 Msa0588600:CDS 35.0%
TAAAAAAGAGACGAGAACGA+CGG - chr4_2:10995910-10995929 None:intergenic 35.0%
GGCATCAACAAATTTGATAG+CGG + chr4_2:10996056-10996075 Msa0588600:three_prime_UTR 35.0%
! TCACCAATCTTGCACTATTT+TGG + chr4_2:10996085-10996104 Msa0588600:intron 35.0%
GTTCCAAAATAGTGCAAGAT+TGG - chr4_2:10996091-10996110 None:intergenic 35.0%
!! CCGAACTTTAAGGTTATGTT+TGG + chr4_2:10996136-10996155 Msa0588600:intron 35.0%
! TTAAGGTTATGTTTGGGACA+TGG + chr4_2:10996143-10996162 Msa0588600:intron 35.0%
! TAAGGTTATGTTTGGGACAT+GGG + chr4_2:10996144-10996163 Msa0588600:intron 35.0%
! TTTGGGACATGGGTTTATAA+GGG + chr4_2:10996154-10996173 Msa0588600:intron 35.0%
GAAACTAAAAGAGAAGGGTA+TGG - chr4_2:10996308-10996327 None:intergenic 35.0%
AAACTGTGTAGTAACATTCC+CGG + chr4_2:10996356-10996375 Msa0588600:intron 35.0%
ACTTTGAACCGAGTATTTCA+AGG + chr4_2:10996384-10996403 Msa0588600:intron 35.0%
AGAATGAATGTCACCAATGT+CGG - chr4_2:10996448-10996467 None:intergenic 35.0%
GATAACTGGCAATTTGTCAA+TGG - chr4_2:10996591-10996610 None:intergenic 35.0%
! CATTGGAATACTTTTCTCAG+TGG + chr4_2:10996628-10996647 Msa0588600:three_prime_UTR 35.0%
ATGTGTATACTCATGTCATG+AGG + chr4_2:10996669-10996688 Msa0588600:intron 35.0%
CTTGAATAAGAGATAGCGAT+AGG - chr4_2:10996992-10997011 None:intergenic 35.0%
GTGATTTCATAATTGAAGCG+AGG + chr4_2:10997094-10997113 Msa0588600:intron 35.0%
GGATCAATCAAGTGAGAAAT+AGG - chr4_2:10997188-10997207 None:intergenic 35.0%
AGTACCAAACTTCTTCTCAT+TGG + chr4_2:10997274-10997293 Msa0588600:intron 35.0%
! CTCACACTCTTTTCAACATT+TGG + chr4_2:10997504-10997523 Msa0588600:intron 35.0%
! ACACTCTTTTCAACATTTGG+AGG + chr4_2:10997507-10997526 Msa0588600:intron 35.0%
TCACTGTAAATCTCATTCTG+AGG - chr4_2:10997672-10997691 None:intergenic 35.0%
!!! GTGATTTTAAGTTCACTCAC+TGG + chr4_2:10997688-10997707 Msa0588600:intron 35.0%
CTGCACTTAAAATCACATTC+TGG - chr4_2:10997868-10997887 None:intergenic 35.0%
CTTGCACTGTAATTTGACAT+AGG - chr4_2:10997915-10997934 None:intergenic 35.0%
TGTACACAAAGGTAACACAA+TGG - chr4_2:10997961-10997980 None:intergenic 35.0%
TCATTTAAGTCAAGGTTCAG+AGG - chr4_2:10998093-10998112 None:intergenic 35.0%
ATCACATAAGGTCACATAAG+AGG - chr4_2:10998169-10998188 None:intergenic 35.0%
ATTATCAGGGTCAACAAAGT+TGG + chr4_2:10998304-10998323 Msa0588600:intron 35.0%
TAAGACACATCAGCAGAAAG+TGG - chr4_2:10995716-10995735 None:intergenic 40.0%
TCTCCCTGTGATTGAAAATC+AGG - chr4_2:10995772-10995791 None:intergenic 40.0%
AAAAAAGAGACGAGAACGAC+GGG - chr4_2:10995909-10995928 None:intergenic 40.0%
TAAACAGTGGGATAAACCTG+AGG + chr4_2:10995984-10996003 Msa0588600:intron 40.0%
CCAAACCAAATAGTCCTAAC+CGG - chr4_2:10996011-10996030 None:intergenic 40.0%
! CGGTTAGGACTATTTGGTTT+GGG + chr4_2:10996009-10996028 Msa0588600:three_prime_UTR 40.0%
! GTTTGGGACATGGGTTTATA+AGG + chr4_2:10996153-10996172 Msa0588600:intron 40.0%
TTGGGACATGGGTTTATAAG+GGG + chr4_2:10996155-10996174 Msa0588600:intron 40.0%
TATCCAGGATCCTTAATCAG+TGG - chr4_2:10996275-10996294 None:intergenic 40.0%
TGGGGGAAACTAAAAGAGAA+GGG - chr4_2:10996313-10996332 None:intergenic 40.0%
TTGGGGGAAACTAAAAGAGA+AGG - chr4_2:10996314-10996333 None:intergenic 40.0%
! TTAGGGTTTCTTTGGGAGTT+GGG - chr4_2:10996332-10996351 None:intergenic 40.0%
! ATTAGGGTTTCTTTGGGAGT+TGG - chr4_2:10996333-10996352 None:intergenic 40.0%
ACTCGGTTCAAAGTTAACAC+CGG - chr4_2:10996378-10996397 None:intergenic 40.0%
! TTCTCGAGAGTTTTCTAGGT+TGG - chr4_2:10996425-10996444 None:intergenic 40.0%
CAATGAGTTCCAACGAAATC+GGG - chr4_2:10996613-10996632 None:intergenic 40.0%
CCAATGAGTTCCAACGAAAT+CGG - chr4_2:10996614-10996633 None:intergenic 40.0%
GCTCCCAAGTGAGATTTATT+TGG - chr4_2:10996775-10996794 None:intergenic 40.0%
AGAGGGACTTGATGAATTGA+TGG + chr4_2:10996905-10996924 Msa0588600:intron 40.0%
ATCTCTTATTCAAGCCTGAC+CGG + chr4_2:10996998-10997017 Msa0588600:three_prime_UTR 40.0%
GATATAAATGCTTACCGGTC+AGG - chr4_2:10997015-10997034 None:intergenic 40.0%
GTAGCTAACATCAGACAAAC+TGG - chr4_2:10997051-10997070 None:intergenic 40.0%
CCAATCAAAGGGTCATTAAC+AGG - chr4_2:10997209-10997228 None:intergenic 40.0%
CCTGTTAATGACCCTTTGAT+TGG + chr4_2:10997206-10997225 Msa0588600:intron 40.0%
GCAACCAATGAGAAGAAGTT+TGG - chr4_2:10997281-10997300 None:intergenic 40.0%
!! CTGGTTTGGAATCGATTATG+AGG - chr4_2:10997533-10997552 None:intergenic 40.0%
ACTGTTTCCAAACCAACCTA+GGG - chr4_2:10997563-10997582 None:intergenic 40.0%
AACTGTTTCCAAACCAACCT+AGG - chr4_2:10997564-10997583 None:intergenic 40.0%
! TGGTTTGGAAACAGTTGCAT+TGG + chr4_2:10997568-10997587 Msa0588600:intron 40.0%
TGGAAACAGTTGCATTGGAA+TGG + chr4_2:10997573-10997592 Msa0588600:intron 40.0%
! AGTTGATTCATGCCTCACAA+GGG + chr4_2:10998341-10998360 Msa0588600:three_prime_UTR 40.0%
CAAAAAAATTCTCACGCCTG+CGG - chr4_2:10998384-10998403 None:intergenic 40.0%
CCAGAAGCCTTCACAACAAA+TGG - chr4_2:10995807-10995826 None:intergenic 45.0%
!! CCATTTGTTGTGAAGGCTTC+TGG + chr4_2:10995804-10995823 Msa0588600:exon 45.0%
CCGGTTAGGACTATTTGGTT+TGG + chr4_2:10996008-10996027 Msa0588600:three_prime_UTR 45.0%
AAGGGGAAGAGAAGAGCTTA+TGG + chr4_2:10996172-10996191 Msa0588600:intron 45.0%
! CTTCCACTGATTAAGGATCC+TGG + chr4_2:10996269-10996288 Msa0588600:intron 45.0%
TATGGAGTAGTGGTGTATCC+AGG - chr4_2:10996290-10996309 None:intergenic 45.0%
! AAGAGAAGGGTATGGAGTAG+TGG - chr4_2:10996300-10996319 None:intergenic 45.0%
! TAGGGTTTCTTTGGGAGTTG+GGG - chr4_2:10996331-10996350 None:intergenic 45.0%
CTCGGTTCAAAGTTAACACC+GGG - chr4_2:10996377-10996396 None:intergenic 45.0%
! TCGGTTCTCGAGAGTTTTCT+AGG - chr4_2:10996429-10996448 None:intergenic 45.0%
AAACTCTCGAGAACCGACAT+TGG + chr4_2:10996432-10996451 Msa0588600:intron 45.0%
TCCAACGAAATCGGGATAAC+TGG - chr4_2:10996605-10996624 None:intergenic 45.0%
CCGATTTCGTTGGAACTCAT+TGG + chr4_2:10996611-10996630 Msa0588600:three_prime_UTR 45.0%
! CTTCTCATTGGTTGCAAGAG+AGG + chr4_2:10997286-10997305 Msa0588600:intron 45.0%
!! AAGATTCCCCTAGGTTGGTT+TGG + chr4_2:10997553-10997572 Msa0588600:intron 45.0%
CTGTTTCCAAACCAACCTAG+GGG - chr4_2:10997562-10997581 None:intergenic 45.0%
AATTCGGCAGCACATCTTAC+TGG - chr4_2:10997840-10997859 None:intergenic 45.0%
! GAGTTGATTCATGCCTCACA+AGG + chr4_2:10998340-10998359 Msa0588600:three_prime_UTR 45.0%
! GTTGATTCATGCCTCACAAG+GGG + chr4_2:10998342-10998361 Msa0588600:three_prime_UTR 45.0%
TTGATTCATGCCTCACAAGG+GGG + chr4_2:10998343-10998362 Msa0588600:three_prime_UTR 45.0%
!! GTGGATTGAACTTTTTCCGC+AGG + chr4_2:10998365-10998384 Msa0588600:three_prime_UTR 45.0%
!!! CGCAGGCGTGAGAATTTTTT+TGG + chr4_2:10998382-10998401 Msa0588600:three_prime_UTR 45.0%
AGTGGGATAAACCTGAGGAC+CGG + chr4_2:10995989-10996008 Msa0588600:intron 50.0%
GATAAACCTGAGGACCGGTT+AGG + chr4_2:10995994-10996013 Msa0588600:three_prime_UTR 50.0%
AATAGTCCTAACCGGTCCTC+AGG - chr4_2:10996003-10996022 None:intergenic 50.0%
GAGGACCGGTTAGGACTATT+TGG + chr4_2:10996003-10996022 Msa0588600:three_prime_UTR 50.0%
TTGCAGCTGTAGTAGCGCTT+TGG + chr4_2:10996034-10996053 Msa0588600:three_prime_UTR 50.0%
TGCAGCTGTAGTAGCGCTTT+GGG + chr4_2:10996035-10996054 Msa0588600:three_prime_UTR 50.0%
! AGGGTTTCTTTGGGAGTTGG+GGG - chr4_2:10996330-10996349 None:intergenic 50.0%
GCCAGTTATCCCGATTTCGT+TGG + chr4_2:10996601-10996620 Msa0588600:three_prime_UTR 50.0%
! CCTAGGGGAATCTTCTGGTT+TGG - chr4_2:10997547-10997566 None:intergenic 50.0%
CCAAACCAGAAGATTCCCCT+AGG + chr4_2:10997544-10997563 Msa0588600:intron 50.0%
ACCAGAAGATTCCCCTAGGT+TGG + chr4_2:10997548-10997567 Msa0588600:intron 50.0%
ACCAACCTAGGGGAATCTTC+TGG - chr4_2:10997552-10997571 None:intergenic 50.0%
TCGTTCCATTTGCGCTTCGC+AGG + chr4_2:10997604-10997623 Msa0588600:intron 55.0%
CACAACCTGCGAAGCGCAAA+TGG - chr4_2:10997612-10997631 None:intergenic 55.0%
ATTCATGCCTCACAAGGGGG+TGG + chr4_2:10998346-10998365 Msa0588600:three_prime_UTR 55.0%
GTTCAATCCACCCCCTTGTG+AGG - chr4_2:10998356-10998375 None:intergenic 55.0%
ACGAGAACGACGGGAGTGGT+AGG - chr4_2:10995900-10995919 None:intergenic 60.0%
AGAGACGAGAACGACGGGAG+TGG - chr4_2:10995904-10995923 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10995666 10998408 10995666 ID=Msa0588600;Name=Msa0588600
chr4_2 mRNA 10995666 10998408 10995666 ID=Msa0588600-mRNA-1;Parent=Msa0588600;Name=Msa0588600-mRNA-1;_AED=0.30;_eAED=0.30;_QI=91|0.8|0.66|0.83|1|1|6|401|19
chr4_2 exon 10995666 10995881 10995666 ID=Msa0588600-mRNA-1:exon:3167;Parent=Msa0588600-mRNA-1
chr4_2 exon 10995991 10996077 10995991 ID=Msa0588600-mRNA-1:exon:3168;Parent=Msa0588600-mRNA-1
chr4_2 exon 10996587 10996649 10996587 ID=Msa0588600-mRNA-1:exon:3169;Parent=Msa0588600-mRNA-1
chr4_2 exon 10996982 10997019 10996982 ID=Msa0588600-mRNA-1:exon:3170;Parent=Msa0588600-mRNA-1
chr4_2 exon 10997789 10997839 10997789 ID=Msa0588600-mRNA-1:exon:3171;Parent=Msa0588600-mRNA-1
chr4_2 exon 10998312 10998408 10998312 ID=Msa0588600-mRNA-1:exon:3172;Parent=Msa0588600-mRNA-1
chr4_2 five_prime_UTR 10995666 10995756 10995666 ID=Msa0588600-mRNA-1:five_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 CDS 10995757 10995816 10995757 ID=Msa0588600-mRNA-1:cds;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10995817 10995881 10995817 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10995991 10996077 10995991 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10996587 10996649 10996587 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10996982 10997019 10996982 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10997789 10997839 10997789 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
chr4_2 three_prime_UTR 10998312 10998408 10998312 ID=Msa0588600-mRNA-1:three_prime_utr;Parent=Msa0588600-mRNA-1
Gene Sequence

>Msa0588600

ATGTTCCTGATTCCTGATTTTCAATCACAGGGAGACAGAGTAACGTTCCATTTGTTGTGA

Protein sequence

>Msa0588600

MFLIPDFQSQGDRVTFHLL*