AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021680 MtrunA17_Chr7g0238011 95.833 120 5 0 1 120 1 120 7.71e-81 233
Msa1021680 MtrunA17_Chr4g0005161 63.393 112 41 0 1 112 1 112 3.76e-48 150
Msa1021680 MtrunA17_Chr4g0071771 50.893 112 55 0 1 112 1 112 2.61e-33 112
Msa1021680 MtrunA17_Chr4g0071761 48.214 112 58 0 1 112 1 112 3.56e-31 107
Msa1021680 MtrunA17_Chr4g0005151 44.118 102 57 0 1 102 1 102 3.58e-29 102
Msa1021680 MtrunA17_Chr7g0243451 39.623 106 64 0 1 106 1 106 7.82e-28 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021680 AT5G01650.1 60.000 115 46 0 1 115 1 115 1.53e-46 146
Msa1021680 AT5G01650.4 61.682 107 41 0 1 107 1 107 1.10e-44 141
Msa1021680 AT5G01650.2 60.748 107 42 0 1 107 1 107 5.77e-44 140
Msa1021680 AT5G01650.3 60.748 107 42 0 1 107 1 107 5.77e-44 140
Msa1021680 AT5G57170.1 47.321 112 59 0 1 112 1 112 3.58e-29 102
Msa1021680 AT5G57170.2 49.020 102 52 0 1 102 1 102 8.08e-29 101
Msa1021680 AT3G51660.1 39.806 103 62 0 1 103 1 103 9.34e-24 88.6

Find 61 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTTCATACATATATTT+AGG 0.180060 7_1:-46596945 None:intergenic
CTCTAGGATAAAATTAAATT+TGG 0.186478 7_1:-46595300 None:intergenic
AAAAGTGTTCATACAGATTT+GGG 0.230111 7_1:-46595533 None:intergenic
AGAGTTGAGTTGAGAGAGTA+TGG 0.230816 7_1:-46595486 None:intergenic
CTTAGTTTGTTGTTCAAATC+TGG 0.254690 7_1:-46596337 None:intergenic
AGTTCTCAAATCACACTTTC+AGG 0.278519 7_1:-46596975 None:intergenic
TCAACAAACGTTAGCTTTGA+TGG 0.285904 7_1:+46595449 Msa1021680:CDS
GAAAAGTGTTCATACAGATT+TGG 0.288874 7_1:-46595534 None:intergenic
TTGTTTGAAAATTGCACTTT+AGG 0.289411 7_1:+46597029 Msa1021680:three_prime_UTR
AGCCACAATGATTTGTTTAG+TGG 0.330071 7_1:-46596830 None:intergenic
AATTAAAAGAAATGCATATT+AGG 0.336657 7_1:+46597000 Msa1021680:three_prime_UTR
CTTTACTTTCTCATGAGTTC+AGG 0.339663 7_1:+46596644 Msa1021680:three_prime_UTR
ACAAGTTTCTCGGAATCATT+TGG 0.359454 7_1:-46596594 None:intergenic
GTTATAATTGTGGACTGAAT+GGG 0.367727 7_1:+46596552 Msa1021680:CDS
GGATCAATACCAATATGTTT+TGG 0.376407 7_1:+46596259 Msa1021680:CDS
TCAGTTTCACCAAAACATAT+TGG 0.384156 7_1:-46596268 None:intergenic
GGTTATAATTGTGGACTGAA+TGG 0.389437 7_1:+46596551 Msa1021680:CDS
ATCCTAGAGAACTATATTCA+AGG 0.409144 7_1:+46595314 Msa1021680:five_prime_UTR
TATGGTGAATTTGTGGCTAT+TGG 0.409602 7_1:+46596304 Msa1021680:CDS
CAATCTATCCACAAGTTTCT+CGG 0.410916 7_1:-46596604 None:intergenic
TATGTGACGGTTTCATTAGA+AGG 0.443254 7_1:+46596238 Msa1021680:CDS
AGTTCTTCACACCATGTTGT+CGG 0.443341 7_1:+46596375 Msa1021680:CDS
AAAGCTAACGTTTGTTGAAA+GGG 0.447172 7_1:-46595444 None:intergenic
ACTGAGGAGCCAGCAGCATA+TGG 0.461454 7_1:+46596286 Msa1021680:CDS
CAAAGCTAACGTTTGTTGAA+AGG 0.463062 7_1:-46595445 None:intergenic
GACCTTGAATATAGTTCTCT+AGG 0.465623 7_1:-46595316 None:intergenic
GTCTTGTGTTCAAACCTCAT+AGG 0.472732 7_1:-46596782 None:intergenic
AATTTGTAGGGTTATAATTG+TGG 0.473862 7_1:+46596542 Msa1021680:intron
CTTAAAATTCTATGACATTG+AGG 0.475447 7_1:+46596417 Msa1021680:CDS
ATTATGTTTAAGCTTATGCT+AGG 0.479050 7_1:+46596698 Msa1021680:three_prime_UTR
TCATTGTACACCAAGGAAAC+CGG 0.485814 7_1:-46596757 None:intergenic
CCATGGAAGATTTACAAGTC+GGG 0.486226 7_1:-46596672 None:intergenic
CCAAGGAAACCGGAAAGAAA+AGG 0.489163 7_1:-46596747 None:intergenic
AATGATTTGTTTAGTGGTGA+GGG 0.499264 7_1:-46596824 None:intergenic
AGCAGCATATGGTGAATTTG+TGG 0.510208 7_1:+46596297 Msa1021680:CDS
CAATGATTTGTTTAGTGGTG+AGG 0.523970 7_1:-46596825 None:intergenic
TTATGTTTAAGCTTATGCTA+GGG 0.534518 7_1:+46596699 Msa1021680:three_prime_UTR
ACAAATTCACCATATGCTGC+TGG 0.542569 7_1:-46596295 None:intergenic
TTATAATTGTGGACTGAATG+GGG 0.546367 7_1:+46596553 Msa1021680:CDS
TAATAAAAGTTGTGTGGTGG+TGG 0.554767 7_1:+46595360 Msa1021680:five_prime_UTR
CAACATGGTGTGAAGAACTA+AGG 0.556695 7_1:-46596371 None:intergenic
ACCATGGAAGATTTACAAGT+CGG 0.557639 7_1:-46596673 None:intergenic
CCCGACTTGTAAATCTTCCA+TGG 0.569989 7_1:+46596672 Msa1021680:three_prime_UTR
AAATGATTCCGAGAAACTTG+TGG 0.574686 7_1:+46596596 Msa1021680:exon
TTTAAGTAGAAACGTGACTT+GGG 0.574926 7_1:-46596400 None:intergenic
GAAAGAAAAGGAACTGCACA+CGG 0.577234 7_1:-46596735 None:intergenic
TTTGGGGTAACACAAGATGT+TGG 0.578477 7_1:-46595516 None:intergenic
GGTGTACAATGAAGCCTATG+AGG 0.578739 7_1:+46596768 Msa1021680:three_prime_UTR
TATGTTTAAGCTTATGCTAG+GGG 0.605205 7_1:+46596700 Msa1021680:three_prime_UTR
TGACTTGGGCACCGACAACA+TGG 0.611246 7_1:-46596386 None:intergenic
AAAAGATAATAAAAGTTGTG+TGG 0.628884 7_1:+46595354 Msa1021680:five_prime_UTR
TATAATTGTGGACTGAATGG+GGG 0.631220 7_1:+46596554 Msa1021680:CDS
TTTGTTGAAAGGGTGAGACA+AGG 0.631716 7_1:-46595434 None:intergenic
TATTGATTTGCAGTATGTGA+CGG 0.638900 7_1:+46596225 Msa1021680:intron
AGCTTAAACATAATTCACCA+TGG 0.659893 7_1:-46596689 None:intergenic
CACCACTAAACAAATCATTG+TGG 0.682479 7_1:+46596828 Msa1021680:three_prime_UTR
AGATAATAAAAGTTGTGTGG+TGG 0.689825 7_1:+46595357 Msa1021680:five_prime_UTR
AAAGTGTTCATACAGATTTG+GGG 0.721663 7_1:-46595532 None:intergenic
ATAGGCTTCATTGTACACCA+AGG 0.729059 7_1:-46596764 None:intergenic
AGAAAAGGAACTGCACACGG+AGG 0.730390 7_1:-46596732 None:intergenic
GGGTTTATGTACTATATACG+AGG 0.738348 7_1:-46596804 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATTCATTAGTTTTA+TGG + chr7_1:46595598-46595617 Msa1021680:intron 10.0%
!!! TAAATTATTCATTAGTTTTA+TGG + chr7_1:46595598-46595617 Msa1021680:intron 10.0%
!! AATTAAAAGAAATGCATATT+AGG + chr7_1:46597000-46597019 Msa1021680:three_prime_UTR 15.0%
!! AATTAAAAGAAATGCATATT+AGG + chr7_1:46597000-46597019 Msa1021680:three_prime_UTR 15.0%
!!! CTCTAGGATAAAATTAAATT+TGG - chr7_1:46595303-46595322 None:intergenic 20.0%
!! AAAAGATAATAAAAGTTGTG+TGG + chr7_1:46595354-46595373 Msa1021680:five_prime_UTR 20.0%
!! ACAAATATTAGTAACTAGAT+AGG + chr7_1:46595705-46595724 Msa1021680:intron 20.0%
!! TAAATTTAAAGACGAATCTT+TGG + chr7_1:46595743-46595762 Msa1021680:intron 20.0%
!! CTAACAAAAATGTTTCAATA+AGG - chr7_1:46595787-46595806 None:intergenic 20.0%
!!! TTTTAGTTATTTTTCCTTCA+TGG + chr7_1:46595897-46595916 Msa1021680:intron 20.0%
!! TAGTTATCGAATATTTAATC+CGG + chr7_1:46595983-46596002 Msa1021680:intron 20.0%
!!! CTTTAAAATGAGATAAAAAC+CGG - chr7_1:46596005-46596024 None:intergenic 20.0%
!! CAATTCAAAATAGTAAATGT+TGG - chr7_1:46596445-46596464 None:intergenic 20.0%
!!! TCATATGTTTGTTAATTTGT+AGG + chr7_1:46596529-46596548 Msa1021680:intron 20.0%
!!! CATATGTTTGTTAATTTGTA+GGG + chr7_1:46596530-46596549 Msa1021680:intron 20.0%
!! ACTACTTCATACATATATTT+AGG - chr7_1:46596948-46596967 None:intergenic 20.0%
!! TAGGATAAAATTAAATTTGG+CGG - chr7_1:46595300-46595319 None:intergenic 20.0%
!!! CTCTAGGATAAAATTAAATT+TGG - chr7_1:46595303-46595322 None:intergenic 20.0%
!! AAAAGATAATAAAAGTTGTG+TGG + chr7_1:46595354-46595373 Msa1021680:five_prime_UTR 20.0%
!! ACAAATATTAGTAACTAGAT+AGG + chr7_1:46595705-46595724 Msa1021680:intron 20.0%
!! TAAATTTAAAGACGAATCTT+TGG + chr7_1:46595743-46595762 Msa1021680:intron 20.0%
!! CTAACAAAAATGTTTCAATA+AGG - chr7_1:46595787-46595806 None:intergenic 20.0%
!!! TTTTAGTTATTTTTCCTTCA+TGG + chr7_1:46595897-46595916 Msa1021680:intron 20.0%
!! TAGTTATCGAATATTTAATC+CGG + chr7_1:46595983-46596002 Msa1021680:intron 20.0%
!!! CTTTAAAATGAGATAAAAAC+CGG - chr7_1:46596005-46596024 None:intergenic 20.0%
!! CAATTCAAAATAGTAAATGT+TGG - chr7_1:46596445-46596464 None:intergenic 20.0%
!!! TCATATGTTTGTTAATTTGT+AGG + chr7_1:46596529-46596548 Msa1021680:intron 20.0%
!!! CATATGTTTGTTAATTTGTA+GGG + chr7_1:46596530-46596549 Msa1021680:intron 20.0%
!! ACTACTTCATACATATATTT+AGG - chr7_1:46596948-46596967 None:intergenic 20.0%
!!! AAAAGTGTTCATACAGATTT+GGG - chr7_1:46595536-46595555 None:intergenic 25.0%
!!! GTTATAGTCTTGTGAAAATA+TGG + chr7_1:46595625-46595644 Msa1021680:intron 25.0%
! CAAATGAGTTAAAAGAACTA+TGG - chr7_1:46595932-46595951 None:intergenic 25.0%
! AGACCTAAAACAAAATACAA+GGG + chr7_1:46596058-46596077 Msa1021680:intron 25.0%
!!! AATCCCTTGTATTTTGTTTT+AGG - chr7_1:46596064-46596083 None:intergenic 25.0%
! CTTAAAATTCTATGACATTG+AGG + chr7_1:46596417-46596436 Msa1021680:CDS 25.0%
! AATTTGTAGGGTTATAATTG+TGG + chr7_1:46596542-46596561 Msa1021680:intron 25.0%
! ATTATGTTTAAGCTTATGCT+AGG + chr7_1:46596698-46596717 Msa1021680:three_prime_UTR 25.0%
! TTATGTTTAAGCTTATGCTA+GGG + chr7_1:46596699-46596718 Msa1021680:three_prime_UTR 25.0%
! TTGTTTGAAAATTGCACTTT+AGG + chr7_1:46597029-46597048 Msa1021680:three_prime_UTR 25.0%
!!! AAAAGTGTTCATACAGATTT+GGG - chr7_1:46595536-46595555 None:intergenic 25.0%
!!! GTTATAGTCTTGTGAAAATA+TGG + chr7_1:46595625-46595644 Msa1021680:intron 25.0%
! CAAATGAGTTAAAAGAACTA+TGG - chr7_1:46595932-46595951 None:intergenic 25.0%
! AGACCTAAAACAAAATACAA+GGG + chr7_1:46596058-46596077 Msa1021680:intron 25.0%
!!! AATCCCTTGTATTTTGTTTT+AGG - chr7_1:46596064-46596083 None:intergenic 25.0%
! CTTAAAATTCTATGACATTG+AGG + chr7_1:46596417-46596436 Msa1021680:CDS 25.0%
! AATTTGTAGGGTTATAATTG+TGG + chr7_1:46596542-46596561 Msa1021680:intron 25.0%
! ATTATGTTTAAGCTTATGCT+AGG + chr7_1:46596698-46596717 Msa1021680:three_prime_UTR 25.0%
! TTATGTTTAAGCTTATGCTA+GGG + chr7_1:46596699-46596718 Msa1021680:three_prime_UTR 25.0%
! TTGTTTGAAAATTGCACTTT+AGG + chr7_1:46597029-46597048 Msa1021680:three_prime_UTR 25.0%
ATCCTAGAGAACTATATTCA+AGG + chr7_1:46595314-46595333 Msa1021680:five_prime_UTR 30.0%
AGATAATAAAAGTTGTGTGG+TGG + chr7_1:46595357-46595376 Msa1021680:five_prime_UTR 30.0%
! AAAGCTAACGTTTGTTGAAA+GGG - chr7_1:46595447-46595466 None:intergenic 30.0%
! AAAGTGTTCATACAGATTTG+GGG - chr7_1:46595535-46595554 None:intergenic 30.0%
!! GAAAAGTGTTCATACAGATT+TGG - chr7_1:46595537-46595556 None:intergenic 30.0%
ATACATTCATGCAAATAGAG+AGG - chr7_1:46595575-46595594 None:intergenic 30.0%
CTTAACCTTCCAATTCTTTA+AGG - chr7_1:46595862-46595881 None:intergenic 30.0%
TATGGTTCAAATTTCCATGA+AGG - chr7_1:46595914-46595933 None:intergenic 30.0%
!!! TCTCATTTTAAAGTAATCCC+TGG + chr7_1:46596012-46596031 Msa1021680:intron 30.0%
TTTAGGTCTCTTAATCTGTT+GGG - chr7_1:46596047-46596066 None:intergenic 30.0%
!! TTTTAGGTCTCTTAATCTGT+TGG - chr7_1:46596048-46596067 None:intergenic 30.0%
GAGACCTAAAACAAAATACA+AGG + chr7_1:46596057-46596076 Msa1021680:intron 30.0%
!! TATTGATTTGCAGTATGTGA+CGG + chr7_1:46596225-46596244 Msa1021680:intron 30.0%
! GGATCAATACCAATATGTTT+TGG + chr7_1:46596259-46596278 Msa1021680:CDS 30.0%
TCAGTTTCACCAAAACATAT+TGG - chr7_1:46596271-46596290 None:intergenic 30.0%
!!! AATATGTTTTGGTGAAACTG+AGG + chr7_1:46596270-46596289 Msa1021680:CDS 30.0%
!! CTTAGTTTGTTGTTCAAATC+TGG - chr7_1:46596340-46596359 None:intergenic 30.0%
TTTAAGTAGAAACGTGACTT+GGG - chr7_1:46596403-46596422 None:intergenic 30.0%
!! TTTTAAGTAGAAACGTGACT+TGG - chr7_1:46596404-46596423 None:intergenic 30.0%
TCAAGAATAGTAAATGAGAG+TGG - chr7_1:46596490-46596509 None:intergenic 30.0%
! GTTATAATTGTGGACTGAAT+GGG + chr7_1:46596552-46596571 Msa1021680:CDS 30.0%
! TTATAATTGTGGACTGAATG+GGG + chr7_1:46596553-46596572 Msa1021680:CDS 30.0%
AGCTTAAACATAATTCACCA+TGG - chr7_1:46596692-46596711 None:intergenic 30.0%
TATGTTTAAGCTTATGCTAG+GGG + chr7_1:46596700-46596719 Msa1021680:three_prime_UTR 30.0%
!! AATGATTTGTTTAGTGGTGA+GGG - chr7_1:46596827-46596846 None:intergenic 30.0%
ATCCTAGAGAACTATATTCA+AGG + chr7_1:46595314-46595333 Msa1021680:five_prime_UTR 30.0%
AGATAATAAAAGTTGTGTGG+TGG + chr7_1:46595357-46595376 Msa1021680:five_prime_UTR 30.0%
! AAAGCTAACGTTTGTTGAAA+GGG - chr7_1:46595447-46595466 None:intergenic 30.0%
! AAAGTGTTCATACAGATTTG+GGG - chr7_1:46595535-46595554 None:intergenic 30.0%
!! GAAAAGTGTTCATACAGATT+TGG - chr7_1:46595537-46595556 None:intergenic 30.0%
ATACATTCATGCAAATAGAG+AGG - chr7_1:46595575-46595594 None:intergenic 30.0%
CTTAACCTTCCAATTCTTTA+AGG - chr7_1:46595862-46595881 None:intergenic 30.0%
TATGGTTCAAATTTCCATGA+AGG - chr7_1:46595914-46595933 None:intergenic 30.0%
!!! TCTCATTTTAAAGTAATCCC+TGG + chr7_1:46596012-46596031 Msa1021680:intron 30.0%
TTTAGGTCTCTTAATCTGTT+GGG - chr7_1:46596047-46596066 None:intergenic 30.0%
!! TTTTAGGTCTCTTAATCTGT+TGG - chr7_1:46596048-46596067 None:intergenic 30.0%
GAGACCTAAAACAAAATACA+AGG + chr7_1:46596057-46596076 Msa1021680:intron 30.0%
!! TATTGATTTGCAGTATGTGA+CGG + chr7_1:46596225-46596244 Msa1021680:intron 30.0%
! GGATCAATACCAATATGTTT+TGG + chr7_1:46596259-46596278 Msa1021680:CDS 30.0%
TCAGTTTCACCAAAACATAT+TGG - chr7_1:46596271-46596290 None:intergenic 30.0%
!!! AATATGTTTTGGTGAAACTG+AGG + chr7_1:46596270-46596289 Msa1021680:CDS 30.0%
!! CTTAGTTTGTTGTTCAAATC+TGG - chr7_1:46596340-46596359 None:intergenic 30.0%
TTTAAGTAGAAACGTGACTT+GGG - chr7_1:46596403-46596422 None:intergenic 30.0%
!! TTTTAAGTAGAAACGTGACT+TGG - chr7_1:46596404-46596423 None:intergenic 30.0%
TCAAGAATAGTAAATGAGAG+TGG - chr7_1:46596490-46596509 None:intergenic 30.0%
! GTTATAATTGTGGACTGAAT+GGG + chr7_1:46596552-46596571 Msa1021680:CDS 30.0%
! TTATAATTGTGGACTGAATG+GGG + chr7_1:46596553-46596572 Msa1021680:CDS 30.0%
AGCTTAAACATAATTCACCA+TGG - chr7_1:46596692-46596711 None:intergenic 30.0%
TATGTTTAAGCTTATGCTAG+GGG + chr7_1:46596700-46596719 Msa1021680:three_prime_UTR 30.0%
!! AATGATTTGTTTAGTGGTGA+GGG - chr7_1:46596827-46596846 None:intergenic 30.0%
GACCTTGAATATAGTTCTCT+AGG - chr7_1:46595319-46595338 None:intergenic 35.0%
TAATAAAAGTTGTGTGGTGG+TGG + chr7_1:46595360-46595379 Msa1021680:five_prime_UTR 35.0%
! TCTTTTTGATCTCACTCACA+TGG - chr7_1:46595392-46595411 None:intergenic 35.0%
! CAAAGCTAACGTTTGTTGAA+AGG - chr7_1:46595448-46595467 None:intergenic 35.0%
!! TCAACAAACGTTAGCTTTGA+TGG + chr7_1:46595449-46595468 Msa1021680:CDS 35.0%
ATGCTAAGCTAGAATTCAAG+TGG - chr7_1:46595830-46595849 None:intergenic 35.0%
GATTCCCTTCCTTAAAGAAT+TGG + chr7_1:46595850-46595869 Msa1021680:intron 35.0%
! CCTTCCAATTCTTTAAGGAA+GGG - chr7_1:46595857-46595876 None:intergenic 35.0%
! ACCTTCCAATTCTTTAAGGA+AGG - chr7_1:46595858-46595877 None:intergenic 35.0%
!!! ATTTTAAAGTAATCCCTGGC+AGG + chr7_1:46596016-46596035 Msa1021680:intron 35.0%
!!! TTTTAAAGTAATCCCTGGCA+GGG + chr7_1:46596017-46596036 Msa1021680:intron 35.0%
TATGTGACGGTTTCATTAGA+AGG + chr7_1:46596238-46596257 Msa1021680:CDS 35.0%
TATGGTGAATTTGTGGCTAT+TGG + chr7_1:46596304-46596323 Msa1021680:CDS 35.0%
! GGTTATAATTGTGGACTGAA+TGG + chr7_1:46596551-46596570 Msa1021680:CDS 35.0%
! TATAATTGTGGACTGAATGG+GGG + chr7_1:46596554-46596573 Msa1021680:CDS 35.0%
ACAAGTTTCTCGGAATCATT+TGG - chr7_1:46596597-46596616 None:intergenic 35.0%
AAATGATTCCGAGAAACTTG+TGG + chr7_1:46596596-46596615 Msa1021680:exon 35.0%
CAATCTATCCACAAGTTTCT+CGG - chr7_1:46596607-46596626 None:intergenic 35.0%
CTTTACTTTCTCATGAGTTC+AGG + chr7_1:46596644-46596663 Msa1021680:three_prime_UTR 35.0%
ACCATGGAAGATTTACAAGT+CGG - chr7_1:46596676-46596695 None:intergenic 35.0%
GGGTTTATGTACTATATACG+AGG - chr7_1:46596807-46596826 None:intergenic 35.0%
!! CAATGATTTGTTTAGTGGTG+AGG - chr7_1:46596828-46596847 None:intergenic 35.0%
CACCACTAAACAAATCATTG+TGG + chr7_1:46596828-46596847 Msa1021680:three_prime_UTR 35.0%
!! AGCCACAATGATTTGTTTAG+TGG - chr7_1:46596833-46596852 None:intergenic 35.0%
AGTTCTCAAATCACACTTTC+AGG - chr7_1:46596978-46596997 None:intergenic 35.0%
GACCTTGAATATAGTTCTCT+AGG - chr7_1:46595319-46595338 None:intergenic 35.0%
TAATAAAAGTTGTGTGGTGG+TGG + chr7_1:46595360-46595379 Msa1021680:five_prime_UTR 35.0%
! TCTTTTTGATCTCACTCACA+TGG - chr7_1:46595392-46595411 None:intergenic 35.0%
! CAAAGCTAACGTTTGTTGAA+AGG - chr7_1:46595448-46595467 None:intergenic 35.0%
!! TCAACAAACGTTAGCTTTGA+TGG + chr7_1:46595449-46595468 Msa1021680:CDS 35.0%
ATGCTAAGCTAGAATTCAAG+TGG - chr7_1:46595830-46595849 None:intergenic 35.0%
GATTCCCTTCCTTAAAGAAT+TGG + chr7_1:46595850-46595869 Msa1021680:intron 35.0%
! CCTTCCAATTCTTTAAGGAA+GGG - chr7_1:46595857-46595876 None:intergenic 35.0%
! ACCTTCCAATTCTTTAAGGA+AGG - chr7_1:46595858-46595877 None:intergenic 35.0%
!!! ATTTTAAAGTAATCCCTGGC+AGG + chr7_1:46596016-46596035 Msa1021680:intron 35.0%
!!! TTTTAAAGTAATCCCTGGCA+GGG + chr7_1:46596017-46596036 Msa1021680:intron 35.0%
TATGTGACGGTTTCATTAGA+AGG + chr7_1:46596238-46596257 Msa1021680:CDS 35.0%
TATGGTGAATTTGTGGCTAT+TGG + chr7_1:46596304-46596323 Msa1021680:CDS 35.0%
! GGTTATAATTGTGGACTGAA+TGG + chr7_1:46596551-46596570 Msa1021680:CDS 35.0%
! TATAATTGTGGACTGAATGG+GGG + chr7_1:46596554-46596573 Msa1021680:CDS 35.0%
ACAAGTTTCTCGGAATCATT+TGG - chr7_1:46596597-46596616 None:intergenic 35.0%
AAATGATTCCGAGAAACTTG+TGG + chr7_1:46596596-46596615 Msa1021680:exon 35.0%
CAATCTATCCACAAGTTTCT+CGG - chr7_1:46596607-46596626 None:intergenic 35.0%
CTTTACTTTCTCATGAGTTC+AGG + chr7_1:46596644-46596663 Msa1021680:three_prime_UTR 35.0%
ACCATGGAAGATTTACAAGT+CGG - chr7_1:46596676-46596695 None:intergenic 35.0%
GGGTTTATGTACTATATACG+AGG - chr7_1:46596807-46596826 None:intergenic 35.0%
!! CAATGATTTGTTTAGTGGTG+AGG - chr7_1:46596828-46596847 None:intergenic 35.0%
CACCACTAAACAAATCATTG+TGG + chr7_1:46596828-46596847 Msa1021680:three_prime_UTR 35.0%
!! AGCCACAATGATTTGTTTAG+TGG - chr7_1:46596833-46596852 None:intergenic 35.0%
AGTTCTCAAATCACACTTTC+AGG - chr7_1:46596978-46596997 None:intergenic 35.0%
TTTGTTGAAAGGGTGAGACA+AGG - chr7_1:46595437-46595456 None:intergenic 40.0%
!! AGAGTTGAGTTGAGAGAGTA+TGG - chr7_1:46595489-46595508 None:intergenic 40.0%
! TTTGGGGTAACACAAGATGT+TGG - chr7_1:46595519-46595538 None:intergenic 40.0%
CCCTTCCTTAAAGAATTGGA+AGG + chr7_1:46595854-46595873 Msa1021680:intron 40.0%
ACAAATTCACCATATGCTGC+TGG - chr7_1:46596298-46596317 None:intergenic 40.0%
AGCAGCATATGGTGAATTTG+TGG + chr7_1:46596297-46596316 Msa1021680:CDS 40.0%
CAACATGGTGTGAAGAACTA+AGG - chr7_1:46596374-46596393 None:intergenic 40.0%
AGTTCTTCACACCATGTTGT+CGG + chr7_1:46596375-46596394 Msa1021680:CDS 40.0%
CCATGGAAGATTTACAAGTC+GGG - chr7_1:46596675-46596694 None:intergenic 40.0%
GAAAGAAAAGGAACTGCACA+CGG - chr7_1:46596738-46596757 None:intergenic 40.0%
! TGTGCAGTTCCTTTTCTTTC+CGG + chr7_1:46596738-46596757 Msa1021680:three_prime_UTR 40.0%
TCATTGTACACCAAGGAAAC+CGG - chr7_1:46596760-46596779 None:intergenic 40.0%
ATAGGCTTCATTGTACACCA+AGG - chr7_1:46596767-46596786 None:intergenic 40.0%
GTCTTGTGTTCAAACCTCAT+AGG - chr7_1:46596785-46596804 None:intergenic 40.0%
TTTGTTGAAAGGGTGAGACA+AGG - chr7_1:46595437-46595456 None:intergenic 40.0%
!! AGAGTTGAGTTGAGAGAGTA+TGG - chr7_1:46595489-46595508 None:intergenic 40.0%
! TTTGGGGTAACACAAGATGT+TGG - chr7_1:46595519-46595538 None:intergenic 40.0%
CCCTTCCTTAAAGAATTGGA+AGG + chr7_1:46595854-46595873 Msa1021680:intron 40.0%
ACAAATTCACCATATGCTGC+TGG - chr7_1:46596298-46596317 None:intergenic 40.0%
AGCAGCATATGGTGAATTTG+TGG + chr7_1:46596297-46596316 Msa1021680:CDS 40.0%
CAACATGGTGTGAAGAACTA+AGG - chr7_1:46596374-46596393 None:intergenic 40.0%
AGTTCTTCACACCATGTTGT+CGG + chr7_1:46596375-46596394 Msa1021680:CDS 40.0%
CCATGGAAGATTTACAAGTC+GGG - chr7_1:46596675-46596694 None:intergenic 40.0%
GAAAGAAAAGGAACTGCACA+CGG - chr7_1:46596738-46596757 None:intergenic 40.0%
! TGTGCAGTTCCTTTTCTTTC+CGG + chr7_1:46596738-46596757 Msa1021680:three_prime_UTR 40.0%
TCATTGTACACCAAGGAAAC+CGG - chr7_1:46596760-46596779 None:intergenic 40.0%
ATAGGCTTCATTGTACACCA+AGG - chr7_1:46596767-46596786 None:intergenic 40.0%
GTCTTGTGTTCAAACCTCAT+AGG - chr7_1:46596785-46596804 None:intergenic 40.0%
AGAGAGGCTTAAGAGAGAGA+AGG - chr7_1:46595559-46595578 None:intergenic 45.0%
! CCCGACTTGTAAATCTTCCA+TGG + chr7_1:46596672-46596691 Msa1021680:three_prime_UTR 45.0%
CCAAGGAAACCGGAAAGAAA+AGG - chr7_1:46596750-46596769 None:intergenic 45.0%
! CCTTTTCTTTCCGGTTTCCT+TGG + chr7_1:46596747-46596766 Msa1021680:three_prime_UTR 45.0%
GGTGTACAATGAAGCCTATG+AGG + chr7_1:46596768-46596787 Msa1021680:three_prime_UTR 45.0%
AGAGAGGCTTAAGAGAGAGA+AGG - chr7_1:46595559-46595578 None:intergenic 45.0%
! CCCGACTTGTAAATCTTCCA+TGG + chr7_1:46596672-46596691 Msa1021680:three_prime_UTR 45.0%
CCAAGGAAACCGGAAAGAAA+AGG - chr7_1:46596750-46596769 None:intergenic 45.0%
! CCTTTTCTTTCCGGTTTCCT+TGG + chr7_1:46596747-46596766 Msa1021680:three_prime_UTR 45.0%
GGTGTACAATGAAGCCTATG+AGG + chr7_1:46596768-46596787 Msa1021680:three_prime_UTR 45.0%
GGTCTCTTAATCTGTTGGGC+TGG - chr7_1:46596043-46596062 None:intergenic 50.0%
AGAAAAGGAACTGCACACGG+AGG - chr7_1:46596735-46596754 None:intergenic 50.0%
GGTCTCTTAATCTGTTGGGC+TGG - chr7_1:46596043-46596062 None:intergenic 50.0%
AGAAAAGGAACTGCACACGG+AGG - chr7_1:46596735-46596754 None:intergenic 50.0%
ACTGAGGAGCCAGCAGCATA+TGG + chr7_1:46596286-46596305 Msa1021680:CDS 55.0%
!! TGACTTGGGCACCGACAACA+TGG - chr7_1:46596389-46596408 None:intergenic 55.0%
TGGACTGAATGGGGGTCTCA+TGG + chr7_1:46596562-46596581 Msa1021680:CDS 55.0%
ACTGAATGGGGGTCTCATGG+TGG + chr7_1:46596565-46596584 Msa1021680:CDS 55.0%
ACTGAGGAGCCAGCAGCATA+TGG + chr7_1:46596286-46596305 Msa1021680:CDS 55.0%
!! TGACTTGGGCACCGACAACA+TGG - chr7_1:46596389-46596408 None:intergenic 55.0%
TGGACTGAATGGGGGTCTCA+TGG + chr7_1:46596562-46596581 Msa1021680:CDS 55.0%
ACTGAATGGGGGTCTCATGG+TGG + chr7_1:46596565-46596584 Msa1021680:CDS 55.0%
!! CTGTTGGGCTGGCCCTGCCA+GGG - chr7_1:46596032-46596051 None:intergenic 70.0%
!! TCTGTTGGGCTGGCCCTGCC+AGG - chr7_1:46596033-46596052 None:intergenic 70.0%
!! CTGTTGGGCTGGCCCTGCCA+GGG - chr7_1:46596032-46596051 None:intergenic 70.0%
!! TCTGTTGGGCTGGCCCTGCC+AGG - chr7_1:46596033-46596052 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 46595299 46597066 46595299 ID=Msa1021680;Name=Msa1021680
chr7_1 mRNA 46595299 46597066 46595299 ID=Msa1021680-mRNA-1;Parent=Msa1021680;Name=Msa1021680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|3|465|120
chr7_1 exon 46595299 46595541 46595299 ID=Msa1021680-mRNA-1:exon:9178;Parent=Msa1021680-mRNA-1
chr7_1 exon 46596238 46596438 46596238 ID=Msa1021680-mRNA-1:exon:9179;Parent=Msa1021680-mRNA-1
chr7_1 exon 46596551 46597066 46596551 ID=Msa1021680-mRNA-1:exon:9180;Parent=Msa1021680-mRNA-1
chr7_1 five_prime_UTR 46595299 46595430 46595299 ID=Msa1021680-mRNA-1:five_prime_utr;Parent=Msa1021680-mRNA-1
chr7_1 CDS 46595431 46595541 46595431 ID=Msa1021680-mRNA-1:cds;Parent=Msa1021680-mRNA-1
chr7_1 CDS 46596238 46596438 46596238 ID=Msa1021680-mRNA-1:cds;Parent=Msa1021680-mRNA-1
chr7_1 CDS 46596551 46596601 46596551 ID=Msa1021680-mRNA-1:cds;Parent=Msa1021680-mRNA-1
chr7_1 three_prime_UTR 46596602 46597066 46596602 ID=Msa1021680-mRNA-1:three_prime_utr;Parent=Msa1021680-mRNA-1
Gene Sequence

>Msa1021680

ATGCCTTGTCTCACCCTTTCAACAAACGTTAGCTTTGATGGTGTAGATGTATCTTCCATACTCTCTCAACTCAACTCTACAATTGCCAACATCTTGTGTTACCCCAAATCTTATGTGACGGTTTCATTAGAAGGATCAATACCAATATGTTTTGGTGAAACTGAGGAGCCAGCAGCATATGGTGAATTTGTGGCTATTGGTATTCTCAATCCAGATTTGAACAACAAACTAAGTGCTGAAATTGCCTTAGTTCTTCACACCATGTTGTCGGTGCCCAAGTCACGTTTCTACTTAAAATTCTATGACATTGAGGGTTATAATTGTGGACTGAATGGGGGTCTCATGGTGGTTGAATCCAAATGA

Protein sequence

>Msa1021680

MPCLTLSTNVSFDGVDVSSILSQLNSTIANILCYPKSYVTVSLEGSIPICFGETEEPAAYGEFVAIGILNPDLNNKLSAEIALVLHTMLSVPKSRFYLKFYDIEGYNCGLNGGLMVVESK*