Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602800 | XP_003606588.1 | 96.262 | 428 | 16 | 0 | 1 | 428 | 46 | 473 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602800 | sp|Q9SIB2|KCS12_ARATH | 70.862 | 429 | 120 | 2 | 1 | 425 | 46 | 473 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa0602800 | 0.814510 | 1.485014e-51 | -8.615850e-47 |
| Msa0075310 | Msa0602800 | 0.811202 | 7.875448e-51 | -8.615850e-47 |
| Msa0602800 | Msa0619980 | 0.808778 | 2.619606e-50 | -8.615850e-47 |
| Msa0602800 | Msa0621770 | 0.802328 | 5.911870e-49 | -8.615850e-47 |
| Msa0602800 | Msa0640880 | 0.803423 | 3.510503e-49 | -8.615850e-47 |
| Msa0602800 | Msa0642650 | 0.809261 | 2.065129e-50 | -8.615850e-47 |
| Msa0602800 | Msa0652980 | 0.802570 | 5.269487e-49 | -8.615850e-47 |
| Msa0602800 | Msa0681890 | 0.812129 | 4.952410e-51 | -8.615850e-47 |
| Msa0602800 | Msa0706370 | 0.802702 | 4.948235e-49 | -8.615850e-47 |
| Msa0602800 | Msa0707780 | 0.806632 | 7.486510e-50 | -8.615850e-47 |
| Msa0602800 | Msa0722940 | 0.817276 | 3.586178e-52 | -8.615850e-47 |
| Msa0602800 | Msa0723150 | 0.816651 | 4.953988e-52 | -8.615850e-47 |
| Msa0602800 | Msa0730180 | 0.812936 | 3.298302e-51 | -8.615850e-47 |
| Msa0602800 | Msa0772020 | 0.809731 | 1.636551e-50 | -8.615850e-47 |
| Msa0602800 | Msa0803130 | 0.807195 | 5.692001e-50 | -8.615850e-47 |
| Msa0602800 | Msa0820670 | 0.800079 | 1.705004e-48 | -8.615850e-47 |
| Msa0602800 | Msa0822990 | 0.806618 | 7.538086e-50 | -8.615850e-47 |
| Msa0602800 | Msa0841490 | 0.804249 | 2.365382e-49 | -8.615850e-47 |
| Msa0602800 | Msa0850500 | 0.817528 | 3.147494e-52 | -8.615850e-47 |
| Msa0602800 | Msa0862100 | 0.824664 | 7.139127e-54 | -8.615850e-47 |
| Msa0602800 | Msa0890250 | 0.816252 | 6.085010e-52 | -8.615850e-47 |
| Msa0602800 | Msa0925160 | 0.805357 | 1.388034e-49 | -8.615850e-47 |
| Msa0602800 | Msa0930330 | 0.816588 | 5.117646e-52 | -8.615850e-47 |
| Msa0602800 | Msa0931610 | 0.820543 | 6.488222e-53 | -8.615850e-47 |
| Msa0602800 | Msa0951710 | 0.816868 | 4.428577e-52 | -8.615850e-47 |
| Msa0602800 | Msa1024140 | 0.812900 | 3.358974e-51 | -8.615850e-47 |
| Msa0602800 | Msa1033560 | 0.808154 | 3.561176e-50 | -8.615850e-47 |
| Msa0602800 | Msa1044340 | 0.811713 | 6.100604e-51 | -8.615850e-47 |
| Msa0602800 | Msa1055260 | 0.802525 | 5.383178e-49 | -8.615850e-47 |
| Msa0602800 | Msa1055280 | 0.809191 | 2.137161e-50 | -8.615850e-47 |
| Msa0602800 | Msa1095470 | 0.818419 | 1.980005e-52 | -8.615850e-47 |
| Msa0602800 | Msa1107970 | 0.816412 | 5.603686e-52 | -8.615850e-47 |
| Msa0602800 | Msa1112610 | 0.806463 | 8.126592e-50 | -8.615850e-47 |
| Msa0602800 | Msa1151960 | 0.802853 | 4.606045e-49 | -8.615850e-47 |
| Msa0602800 | Msa1159100 | 0.804440 | 2.158327e-49 | -8.615850e-47 |
| Msa0602800 | Msa1238480 | 0.809625 | 1.725279e-50 | -8.615850e-47 |
| Msa0602800 | Msa1281720 | 0.820839 | 5.547423e-53 | -8.615850e-47 |
| Msa0602800 | Msa1321000 | 0.836342 | 9.897872e-57 | -8.615850e-47 |
| Msa0602800 | Msa1354040 | 0.805435 | 1.336886e-49 | -8.615850e-47 |
| Msa0602800 | Msa1355400 | 0.827244 | 1.741519e-54 | -8.615850e-47 |
| Msa0602800 | Msa1420060 | 0.808897 | 2.470995e-50 | -8.615850e-47 |
| Msa0602800 | Msa1429830 | 0.827263 | 1.722685e-54 | -8.615850e-47 |
| Msa0602800 | Msa1435050 | 0.811083 | 8.359381e-51 | -8.615850e-47 |
| Msa0602800 | Msa1435670 | 0.820942 | 5.254323e-53 | -8.615850e-47 |
| Msa0602800 | Msa1439670 | 0.808374 | 3.196043e-50 | -8.615850e-47 |
| Msa0130570 | Msa0602800 | 0.802802 | 4.719699e-49 | -8.615850e-47 |
| Msa0139900 | Msa0602800 | 0.808463 | 3.059768e-50 | -8.615850e-47 |
| Msa0168100 | Msa0602800 | 0.803633 | 3.176293e-49 | -8.615850e-47 |
| Msa0183610 | Msa0602800 | 0.818403 | 1.996649e-52 | -8.615850e-47 |
| Msa0200970 | Msa0602800 | 0.815444 | 9.214656e-52 | -8.615850e-47 |
| Msa0227500 | Msa0602800 | 0.808711 | 2.707781e-50 | -8.615850e-47 |
| Msa0370600 | Msa0602800 | 0.819861 | 9.297328e-53 | -8.615850e-47 |
| Msa0382560 | Msa0602800 | 0.820849 | 5.518098e-53 | -8.615850e-47 |
| Msa0418200 | Msa0602800 | 0.831703 | 1.436592e-55 | -8.615850e-47 |
| Msa0257310 | Msa0602800 | 0.800140 | 1.657437e-48 | -8.615850e-47 |
| Msa0281570 | Msa0602800 | 0.802169 | 6.372991e-49 | -8.615850e-47 |
| Msa0297920 | Msa0602800 | 0.815435 | 9.261097e-52 | -8.615850e-47 |
| Msa0301180 | Msa0602800 | 0.815442 | 9.226984e-52 | -8.615850e-47 |
| Msa0320540 | Msa0602800 | 0.808139 | 3.587151e-50 | -8.615850e-47 |
| Msa0331780 | Msa0602800 | 0.816605 | 5.074497e-52 | -8.615850e-47 |
| Msa0344070 | Msa0602800 | 0.808730 | 2.683055e-50 | -8.615850e-47 |
| Msa0345140 | Msa0602800 | 0.802812 | 4.696276e-49 | -8.615850e-47 |
| Msa0524050 | Msa0602800 | 0.800247 | 1.576408e-48 | -8.615850e-47 |
| Msa0524090 | Msa0602800 | 0.804012 | 2.650057e-49 | -8.615850e-47 |
| Msa0524120 | Msa0602800 | 0.820505 | 6.620458e-53 | -8.615850e-47 |
| Msa0525240 | Msa0602800 | 0.807191 | 5.701684e-50 | -8.615850e-47 |
| Msa0575250 | Msa0602800 | 0.803546 | 3.310969e-49 | -8.615850e-47 |
| Msa0576420 | Msa0602800 | 0.819357 | 1.212065e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602800 | MtrunA17_Chr4g0030591 | 96.262 | 428 | 16 | 0 | 1 | 428 | 46 | 473 | 0.0 | 850 |
| Msa0602800 | MtrunA17_Chr4g0030601 | 85.514 | 428 | 53 | 1 | 1 | 428 | 46 | 464 | 0.0 | 763 |
| Msa0602800 | MtrunA17_Chr4g0030581 | 87.150 | 428 | 54 | 1 | 1 | 428 | 46 | 472 | 0.0 | 761 |
| Msa0602800 | MtrunA17_Chr2g0327721 | 71.362 | 426 | 116 | 3 | 2 | 423 | 47 | 470 | 0.0 | 641 |
| Msa0602800 | MtrunA17_Chr1g0212951 | 55.819 | 421 | 178 | 1 | 2 | 414 | 48 | 468 | 0.0 | 513 |
| Msa0602800 | MtrunA17_Chr7g0276251 | 44.416 | 394 | 201 | 5 | 9 | 397 | 145 | 525 | 1.07e-113 | 343 |
| Msa0602800 | MtrunA17_Chr5g0423521 | 41.910 | 377 | 203 | 3 | 23 | 397 | 125 | 487 | 9.08e-107 | 324 |
| Msa0602800 | MtrunA17_Chr1g0188051 | 43.421 | 380 | 192 | 4 | 24 | 397 | 141 | 503 | 3.51e-106 | 323 |
| Msa0602800 | MtrunA17_Chr4g0035081 | 41.689 | 379 | 205 | 4 | 23 | 399 | 137 | 501 | 4.33e-106 | 323 |
| Msa0602800 | MtrunA17_Chr1g0209881 | 40.584 | 377 | 208 | 3 | 23 | 397 | 125 | 487 | 7.83e-105 | 319 |
| Msa0602800 | MtrunA17_Chr1g0166191 | 42.632 | 380 | 195 | 4 | 24 | 397 | 147 | 509 | 1.75e-103 | 317 |
| Msa0602800 | MtrunA17_Chr3g0136561 | 39.541 | 392 | 230 | 2 | 9 | 397 | 513 | 900 | 1.48e-102 | 325 |
| Msa0602800 | MtrunA17_Chr2g0306781 | 42.368 | 380 | 196 | 4 | 24 | 397 | 34 | 396 | 1.58e-102 | 310 |
| Msa0602800 | MtrunA17_Chr4g0063011 | 39.949 | 393 | 203 | 3 | 23 | 415 | 128 | 487 | 6.89e-102 | 312 |
| Msa0602800 | MtrunA17_Chr2g0277841 | 42.520 | 381 | 198 | 6 | 24 | 399 | 86 | 450 | 6.89e-97 | 298 |
| Msa0602800 | MtrunA17_Chr6g0480561 | 40.000 | 380 | 206 | 6 | 24 | 397 | 102 | 465 | 3.62e-95 | 293 |
| Msa0602800 | MtrunA17_Chr7g0276241 | 45.515 | 301 | 141 | 3 | 102 | 397 | 1 | 283 | 5.47e-95 | 287 |
| Msa0602800 | MtrunA17_Chr2g0295781 | 38.684 | 380 | 219 | 4 | 24 | 401 | 85 | 452 | 6.13e-90 | 280 |
| Msa0602800 | MtrunA17_Chr7g0250661 | 44.850 | 301 | 146 | 3 | 102 | 397 | 1 | 286 | 2.55e-88 | 270 |
| Msa0602800 | MtrunA17_Chr2g0282281 | 37.867 | 375 | 216 | 2 | 9 | 383 | 135 | 492 | 2.15e-86 | 272 |
| Msa0602800 | MtrunA17_Chr1g0204301 | 38.624 | 378 | 214 | 7 | 24 | 397 | 120 | 483 | 5.22e-84 | 265 |
| Msa0602800 | MtrunA17_Chr3g0115021 | 36.870 | 377 | 220 | 6 | 24 | 397 | 121 | 482 | 3.10e-78 | 250 |
| Msa0602800 | MtrunA17_Chr3g0115041 | 36.870 | 377 | 220 | 6 | 24 | 397 | 121 | 482 | 3.20e-78 | 250 |
| Msa0602800 | MtrunA17_Chr6g0469631 | 37.135 | 377 | 219 | 6 | 24 | 397 | 120 | 481 | 5.96e-75 | 242 |
| Msa0602800 | MtrunA17_Chr6g0461631 | 40.647 | 278 | 143 | 3 | 137 | 408 | 3 | 264 | 3.79e-65 | 209 |
| Msa0602800 | MtrunA17_Chr4g0026871 | 43.038 | 237 | 118 | 3 | 165 | 397 | 1 | 224 | 1.10e-59 | 194 |
| Msa0602800 | MtrunA17_Chr4g0026791 | 43.750 | 192 | 94 | 3 | 165 | 355 | 1 | 179 | 2.66e-41 | 144 |
| Msa0602800 | MtrunA17_Chr4g0026721 | 40.491 | 163 | 81 | 2 | 238 | 397 | 7 | 156 | 9.95e-37 | 132 |
| Msa0602800 | MtrunA17_Chr6g0461621 | 36.364 | 132 | 80 | 3 | 10 | 138 | 88 | 218 | 2.23e-19 | 86.7 |
| Msa0602800 | MtrunA17_Chr4g0026861 | 33.019 | 106 | 70 | 1 | 33 | 138 | 109 | 213 | 3.56e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602800 | AT2G28630.2 | 70.862 | 429 | 120 | 2 | 1 | 425 | 46 | 473 | 0.0 | 631 |
| Msa0602800 | AT2G28630.1 | 70.862 | 429 | 120 | 2 | 1 | 425 | 46 | 473 | 0.0 | 631 |
| Msa0602800 | AT1G07720.2 | 69.302 | 430 | 127 | 3 | 1 | 425 | 89 | 518 | 0.0 | 619 |
| Msa0602800 | AT1G07720.1 | 69.302 | 430 | 127 | 3 | 1 | 425 | 46 | 475 | 0.0 | 619 |
| Msa0602800 | AT5G04530.1 | 55.288 | 416 | 174 | 4 | 2 | 414 | 49 | 455 | 2.70e-176 | 501 |
| Msa0602800 | AT1G01120.1 | 44.681 | 376 | 178 | 6 | 32 | 397 | 168 | 523 | 1.40e-113 | 343 |
| Msa0602800 | AT1G25450.1 | 42.971 | 377 | 199 | 3 | 23 | 397 | 121 | 483 | 6.52e-109 | 330 |
| Msa0602800 | AT2G16280.1 | 42.597 | 385 | 205 | 4 | 15 | 397 | 137 | 507 | 9.66e-108 | 328 |
| Msa0602800 | AT2G46720.1 | 42.037 | 383 | 197 | 4 | 23 | 397 | 97 | 462 | 1.08e-107 | 326 |
| Msa0602800 | AT4G34510.1 | 42.480 | 379 | 199 | 5 | 23 | 397 | 119 | 482 | 6.78e-106 | 322 |
| Msa0602800 | AT1G68530.1 | 41.379 | 377 | 205 | 3 | 23 | 397 | 126 | 488 | 3.36e-105 | 321 |
| Msa0602800 | AT1G19440.1 | 40.921 | 391 | 209 | 5 | 12 | 397 | 138 | 511 | 6.94e-105 | 320 |
| Msa0602800 | AT1G04220.1 | 40.302 | 397 | 212 | 5 | 13 | 397 | 129 | 512 | 3.77e-104 | 319 |
| Msa0602800 | AT5G43760.1 | 41.162 | 396 | 209 | 5 | 13 | 397 | 135 | 517 | 2.17e-103 | 317 |
| Msa0602800 | AT4G34250.1 | 42.257 | 381 | 198 | 5 | 24 | 399 | 123 | 486 | 2.33e-103 | 316 |
| Msa0602800 | AT2G26640.1 | 41.842 | 380 | 204 | 3 | 23 | 399 | 137 | 502 | 5.30e-103 | 315 |
| Msa0602800 | AT2G15090.1 | 40.576 | 382 | 203 | 5 | 24 | 399 | 115 | 478 | 2.60e-102 | 313 |
| Msa0602800 | AT3G10280.1 | 40.731 | 383 | 195 | 5 | 23 | 397 | 97 | 455 | 5.31e-101 | 308 |
| Msa0602800 | AT4G34520.1 | 41.425 | 379 | 201 | 5 | 24 | 397 | 125 | 487 | 2.24e-99 | 306 |
| Msa0602800 | AT2G26250.1 | 37.531 | 405 | 236 | 4 | 9 | 397 | 144 | 547 | 8.27e-96 | 298 |
| Msa0602800 | AT1G71160.1 | 39.481 | 385 | 211 | 6 | 15 | 397 | 81 | 445 | 6.36e-93 | 288 |
| Msa0602800 | AT5G49070.1 | 39.237 | 367 | 207 | 4 | 34 | 397 | 99 | 452 | 3.13e-89 | 278 |
| Msa0602800 | AT3G52160.2 | 34.637 | 358 | 187 | 3 | 27 | 383 | 16 | 327 | 4.21e-75 | 238 |
| Msa0602800 | AT3G52160.1 | 33.511 | 376 | 203 | 3 | 9 | 383 | 111 | 440 | 9.86e-74 | 238 |
| Msa0602800 | AT1G68530.2 | 39.648 | 227 | 136 | 1 | 23 | 249 | 126 | 351 | 8.62e-56 | 189 |
| Msa0602800 | AT5G49070.2 | 33.488 | 215 | 142 | 1 | 34 | 248 | 99 | 312 | 2.05e-34 | 130 |
Find 75 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTTACTGGCAAAATTT+TGG | 0.088941 | 4_2:-46827347 | None:intergenic |
| AATCAGAAGAACAGAAAATT+TGG | 0.148132 | 4_2:+46826634 | Msa0602800:CDS |
| AAGAGAACTTCTTAGGTTTC+TGG | 0.152049 | 4_2:+46827363 | Msa0602800:CDS |
| CGGCCTTCAATGACATTTCT+TGG | 0.159210 | 4_2:-46826725 | None:intergenic |
| TCAAATGCAATAGTTGCTTA+TGG | 0.231406 | 4_2:+46827713 | Msa0602800:CDS |
| AAGAAACAAGTTAGCACTTT+TGG | 0.238756 | 4_2:+46827024 | Msa0602800:CDS |
| GTATAATTGTTGCCTTAAAA+AGG | 0.254484 | 4_2:+46827231 | Msa0602800:CDS |
| TCATTGCCAGGATACCAATT+TGG | 0.281930 | 4_2:-46827067 | None:intergenic |
| GGCCTTCAATGACATTTCTT+GGG | 0.318949 | 4_2:-46826724 | None:intergenic |
| TACCTTCACTTAAGAAAATC+AGG | 0.326135 | 4_2:-46827874 | None:intergenic |
| TGCCAGTAAGAGAACTTCTT+AGG | 0.328413 | 4_2:+46827356 | Msa0602800:CDS |
| GACAACAAGAACATCGATTT+CGG | 0.346319 | 4_2:-46826846 | None:intergenic |
| AACCTAAGAAGTTCTCTTAC+TGG | 0.346793 | 4_2:-46827358 | None:intergenic |
| CAGAGTCTCTTAGTCCAAAT+TGG | 0.351890 | 4_2:+46827053 | Msa0602800:CDS |
| GTCGTTGATCAATCCTTTCA+TGG | 0.352995 | 4_2:+46827801 | Msa0602800:CDS |
| AGATCCCGTCGTTCAGTGTT+GGG | 0.365852 | 4_2:-46826757 | None:intergenic |
| CAAATGCAATAGTTGCTTAT+GGG | 0.367150 | 4_2:+46827714 | Msa0602800:CDS |
| CGATGTAGTGTCATTCTTGC+TGG | 0.370734 | 4_2:-46827580 | None:intergenic |
| AAAGCAGTGATTGATGGAAT+TGG | 0.371201 | 4_2:+46827523 | Msa0602800:CDS |
| AATCCTTTCATGGAGAAGTA+TGG | 0.384841 | 4_2:+46827811 | Msa0602800:CDS |
| GGTAGTTTGTGGTATGTGTT+GGG | 0.386936 | 4_2:+46827622 | Msa0602800:CDS |
| GTGGTATGTGTTGGGGTACA+TGG | 0.407931 | 4_2:+46827630 | Msa0602800:CDS |
| ATCAGAAGAACAGAAAATTT+GGG | 0.409146 | 4_2:+46826635 | Msa0602800:CDS |
| AGAATGACACTACATCGTTT+TGG | 0.409603 | 4_2:+46827586 | Msa0602800:CDS |
| TGAAATTGAAGTGTTTAGTC+AGG | 0.413898 | 4_2:+46827182 | Msa0602800:CDS |
| GGAGGAAAAGCAGTGATTGA+TGG | 0.414329 | 4_2:+46827517 | Msa0602800:CDS |
| GCCATTGTAAGTTGCGGCAT+TGG | 0.420437 | 4_2:+46826686 | Msa0602800:CDS |
| ACACTTCTGCTGGTAGTTTG+TGG | 0.431099 | 4_2:+46827611 | Msa0602800:CDS |
| TGTTGGAGATGCAAATGTTT+GGG | 0.448918 | 4_2:+46827750 | Msa0602800:CDS |
| CTTAGTCCAAATTGGTATCC+TGG | 0.469589 | 4_2:+46827061 | Msa0602800:CDS |
| GCCCCAAGAAATGTCATTGA+AGG | 0.479831 | 4_2:+46826722 | Msa0602800:CDS |
| ATGTTGGAGATGCAAATGTT+TGG | 0.481221 | 4_2:+46827749 | Msa0602800:CDS |
| ACAATTATACGAGTCATCTC+TGG | 0.483305 | 4_2:-46827218 | None:intergenic |
| TGGTAGTTTGTGGTATGTGT+TGG | 0.487783 | 4_2:+46827621 | Msa0602800:CDS |
| GTGTACAATATCACTGGAAT+GGG | 0.488754 | 4_2:+46826947 | Msa0602800:CDS |
| AGTGTACAATATCACTGGAA+TGG | 0.492125 | 4_2:+46826946 | Msa0602800:CDS |
| GAGATCCCGTCGTTCAGTGT+TGG | 0.492490 | 4_2:-46826758 | None:intergenic |
| TTTATGATAAGCTTTGGTGC+TGG | 0.494845 | 4_2:+46827688 | Msa0602800:CDS |
| AAGCTCTTGTTGCTACCAAT+GGG | 0.506575 | 4_2:-46827297 | None:intergenic |
| AAAGCTCTTGTTGCTACCAA+TGG | 0.508160 | 4_2:-46827298 | None:intergenic |
| AAGAACATCGATTTCGGAAG+GGG | 0.511755 | 4_2:-46826840 | None:intergenic |
| ATCATTGATCTATCATTGCC+AGG | 0.516044 | 4_2:-46827079 | None:intergenic |
| AAAATCAGGAAGTTCAAAGT+TGG | 0.518001 | 4_2:-46827860 | None:intergenic |
| GCCTTCAATGACATTTCTTG+GGG | 0.524862 | 4_2:-46826723 | None:intergenic |
| AGTTCTAAGTCTTCTAGTGG+TGG | 0.525949 | 4_2:+46827427 | Msa0602800:CDS |
| TCAGTGTTGGGGATGCTTCG+CGG | 0.526193 | 4_2:-46826745 | None:intergenic |
| GTAAAAGTGTACAATATCAC+TGG | 0.527763 | 4_2:+46826941 | Msa0602800:CDS |
| CAAAAGAATGGCACAACCAC+CGG | 0.537261 | 4_2:-46827125 | None:intergenic |
| CATCCCCAACACTGAACGAC+GGG | 0.538304 | 4_2:+46826753 | Msa0602800:CDS |
| GGGAAATAGCTGATCTTGCA+AGG | 0.546650 | 4_2:-46826820 | None:intergenic |
| CAACCATACTTCTCCATGAA+AGG | 0.546958 | 4_2:-46827814 | None:intergenic |
| GCCAATGCCGCAACTTACAA+TGG | 0.550333 | 4_2:-46826687 | None:intergenic |
| CCAACACAAGATAGAATGCT+AGG | 0.550403 | 4_2:+46826590 | None:intergenic |
| TCTAAGTCTTCTAGTGGTGG+AGG | 0.552416 | 4_2:+46827430 | Msa0602800:CDS |
| TCTAGTTCTAAGTCTTCTAG+TGG | 0.554027 | 4_2:+46827424 | Msa0602800:CDS |
| AAAGGATTGATCAACGACTC+TGG | 0.554712 | 4_2:-46827796 | None:intergenic |
| CTCAAAGCCATTGTAAGTTG+CGG | 0.555108 | 4_2:+46826680 | Msa0602800:CDS |
| GAAGACGAGCATGGTACGGT+TGG | 0.556957 | 4_2:+46827253 | Msa0602800:CDS |
| TGGGAAGTGATGAAAGATGT+TGG | 0.557628 | 4_2:+46827733 | Msa0602800:CDS |
| TTTATCGAAAACTCTCCCAT+TGG | 0.564592 | 4_2:+46827282 | Msa0602800:CDS |
| GATCCCGTCGTTCAGTGTTG+GGG | 0.581474 | 4_2:-46826756 | None:intergenic |
| GAACGACGGGATCTCAGAGA+TGG | 0.585890 | 4_2:+46826766 | Msa0602800:CDS |
| CTTTCATGGAGAAGTATGGT+TGG | 0.599046 | 4_2:+46827815 | Msa0602800:CDS |
| ACAAGAACATCGATTTCGGA+AGG | 0.601193 | 4_2:-46826842 | None:intergenic |
| AAAGGAAGACGAGCATGGTA+CGG | 0.603680 | 4_2:+46827249 | Msa0602800:CDS |
| CAAGAACATCGATTTCGGAA+GGG | 0.615853 | 4_2:-46826841 | None:intergenic |
| AGACGACAGTGAGGGAACAG+AGG | 0.621132 | 4_2:-46826885 | None:intergenic |
| GTAGTTTGTGGTATGTGTTG+GGG | 0.639729 | 4_2:+46827623 | Msa0602800:CDS |
| CAACACAAGATAGAATGCTA+GGG | 0.644647 | 4_2:+46826591 | None:intergenic |
| TGTTTAGTCAGGACGCATCA+CGG | 0.653313 | 4_2:+46827193 | Msa0602800:CDS |
| TGGTTGGCTCAATGAAGTTG+AGG | 0.662172 | 4_2:+46827831 | Msa0602800:CDS |
| GGATTGATCAACGACTCTGG+TGG | 0.663465 | 4_2:-46827793 | None:intergenic |
| ATGATAAGAGACGACAGTGA+GGG | 0.664471 | 4_2:-46826893 | None:intergenic |
| AATGATAAGAGACGACAGTG+AGG | 0.676318 | 4_2:-46826894 | None:intergenic |
| GCATCCCCAACACTGAACGA+CGG | 0.688356 | 4_2:+46826752 | Msa0602800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATATACTTTTGTTCTTTA+AGG | - | chr4_2:46827164-46827183 | None:intergenic | 20.0% |
| !!! | CAATATACTTTTGTTCTTTA+AGG | - | chr4_2:46827164-46827183 | None:intergenic | 20.0% |
| ! | AATCAGAAGAACAGAAAATT+TGG | + | chr4_2:46826634-46826653 | Msa0602800:CDS | 25.0% |
| ! | ATCAGAAGAACAGAAAATTT+GGG | + | chr4_2:46826635-46826654 | Msa0602800:CDS | 25.0% |
| !!! | TCTTTTGTTTGTCAAAAGAA+TGG | - | chr4_2:46827140-46827159 | None:intergenic | 25.0% |
| ! | GTATAATTGTTGCCTTAAAA+AGG | + | chr4_2:46827231-46827250 | Msa0602800:CDS | 25.0% |
| !! | AGCTTTTGTTGAGAATTTAA+GGG | + | chr4_2:46827315-46827334 | Msa0602800:CDS | 25.0% |
| !!! | ACACCAGTTTTAAAATTCAA+CGG | - | chr4_2:46827475-46827494 | None:intergenic | 25.0% |
| ! | AATCAGAAGAACAGAAAATT+TGG | + | chr4_2:46826634-46826653 | Msa0602800:CDS | 25.0% |
| ! | ATCAGAAGAACAGAAAATTT+GGG | + | chr4_2:46826635-46826654 | Msa0602800:CDS | 25.0% |
| !!! | TCTTTTGTTTGTCAAAAGAA+TGG | - | chr4_2:46827140-46827159 | None:intergenic | 25.0% |
| ! | GTATAATTGTTGCCTTAAAA+AGG | + | chr4_2:46827231-46827250 | Msa0602800:CDS | 25.0% |
| !! | AGCTTTTGTTGAGAATTTAA+GGG | + | chr4_2:46827315-46827334 | Msa0602800:CDS | 25.0% |
| !!! | ACACCAGTTTTAAAATTCAA+CGG | - | chr4_2:46827475-46827494 | None:intergenic | 25.0% |
| ! | GTAAAAGTGTACAATATCAC+TGG | + | chr4_2:46826941-46826960 | Msa0602800:CDS | 30.0% |
| ! | AAGAAACAAGTTAGCACTTT+TGG | + | chr4_2:46827024-46827043 | Msa0602800:CDS | 30.0% |
| ! | TGAAATTGAAGTGTTTAGTC+AGG | + | chr4_2:46827182-46827201 | Msa0602800:CDS | 30.0% |
| ! | GAGCTTTTGTTGAGAATTTA+AGG | + | chr4_2:46827314-46827333 | Msa0602800:CDS | 30.0% |
| ! | TCTCTTACTGGCAAAATTTT+GGG | - | chr4_2:46827349-46827368 | None:intergenic | 30.0% |
| ! | TTCTCTTACTGGCAAAATTT+TGG | - | chr4_2:46827350-46827369 | None:intergenic | 30.0% |
| !!! | TCACCGTTGAATTTTAAAAC+TGG | + | chr4_2:46827469-46827488 | Msa0602800:CDS | 30.0% |
| GCAAAAAAGAGGCTTAAAAA+AGG | + | chr4_2:46827655-46827674 | Msa0602800:CDS | 30.0% | |
| ! | AGGGTTTTTATGATAAGCTT+TGG | + | chr4_2:46827682-46827701 | Msa0602800:CDS | 30.0% |
| TCAAATGCAATAGTTGCTTA+TGG | + | chr4_2:46827713-46827732 | Msa0602800:CDS | 30.0% | |
| CAAATGCAATAGTTGCTTAT+GGG | + | chr4_2:46827714-46827733 | Msa0602800:CDS | 30.0% | |
| AAAATCAGGAAGTTCAAAGT+TGG | - | chr4_2:46827863-46827882 | None:intergenic | 30.0% | |
| ! | GTAAAAGTGTACAATATCAC+TGG | + | chr4_2:46826941-46826960 | Msa0602800:CDS | 30.0% |
| ! | AAGAAACAAGTTAGCACTTT+TGG | + | chr4_2:46827024-46827043 | Msa0602800:CDS | 30.0% |
| ! | TGAAATTGAAGTGTTTAGTC+AGG | + | chr4_2:46827182-46827201 | Msa0602800:CDS | 30.0% |
| ! | GAGCTTTTGTTGAGAATTTA+AGG | + | chr4_2:46827314-46827333 | Msa0602800:CDS | 30.0% |
| ! | TCTCTTACTGGCAAAATTTT+GGG | - | chr4_2:46827349-46827368 | None:intergenic | 30.0% |
| ! | TTCTCTTACTGGCAAAATTT+TGG | - | chr4_2:46827350-46827369 | None:intergenic | 30.0% |
| !!! | TCACCGTTGAATTTTAAAAC+TGG | + | chr4_2:46827469-46827488 | Msa0602800:CDS | 30.0% |
| GCAAAAAAGAGGCTTAAAAA+AGG | + | chr4_2:46827655-46827674 | Msa0602800:CDS | 30.0% | |
| ! | AGGGTTTTTATGATAAGCTT+TGG | + | chr4_2:46827682-46827701 | Msa0602800:CDS | 30.0% |
| TCAAATGCAATAGTTGCTTA+TGG | + | chr4_2:46827713-46827732 | Msa0602800:CDS | 30.0% | |
| CAAATGCAATAGTTGCTTAT+GGG | + | chr4_2:46827714-46827733 | Msa0602800:CDS | 30.0% | |
| AAAATCAGGAAGTTCAAAGT+TGG | - | chr4_2:46827863-46827882 | None:intergenic | 30.0% | |
| !! | GACAACAAGAACATCGATTT+CGG | - | chr4_2:46826849-46826868 | None:intergenic | 35.0% |
| AGTGTACAATATCACTGGAA+TGG | + | chr4_2:46826946-46826965 | Msa0602800:CDS | 35.0% | |
| GTGTACAATATCACTGGAAT+GGG | + | chr4_2:46826947-46826966 | Msa0602800:CDS | 35.0% | |
| ATCATTGATCTATCATTGCC+AGG | - | chr4_2:46827082-46827101 | None:intergenic | 35.0% | |
| ACAATTATACGAGTCATCTC+TGG | - | chr4_2:46827221-46827240 | None:intergenic | 35.0% | |
| TTTATCGAAAACTCTCCCAT+TGG | + | chr4_2:46827282-46827301 | Msa0602800:CDS | 35.0% | |
| AACCTAAGAAGTTCTCTTAC+TGG | - | chr4_2:46827361-46827380 | None:intergenic | 35.0% | |
| AAGAGAACTTCTTAGGTTTC+TGG | + | chr4_2:46827363-46827382 | Msa0602800:CDS | 35.0% | |
| !! | TCTAGTTCTAAGTCTTCTAG+TGG | + | chr4_2:46827424-46827443 | Msa0602800:CDS | 35.0% |
| AAAGCAGTGATTGATGGAAT+TGG | + | chr4_2:46827523-46827542 | Msa0602800:CDS | 35.0% | |
| ! | AGAATGACACTACATCGTTT+TGG | + | chr4_2:46827586-46827605 | Msa0602800:CDS | 35.0% |
| AGAGGCTTAAAAAAGGTGAT+AGG | + | chr4_2:46827662-46827681 | Msa0602800:CDS | 35.0% | |
| GAGGCTTAAAAAAGGTGATA+GGG | + | chr4_2:46827663-46827682 | Msa0602800:CDS | 35.0% | |
| ! | TTTATGATAAGCTTTGGTGC+TGG | + | chr4_2:46827688-46827707 | Msa0602800:CDS | 35.0% |
| ATGTTGGAGATGCAAATGTT+TGG | + | chr4_2:46827749-46827768 | Msa0602800:CDS | 35.0% | |
| TGTTGGAGATGCAAATGTTT+GGG | + | chr4_2:46827750-46827769 | Msa0602800:CDS | 35.0% | |
| AATCCTTTCATGGAGAAGTA+TGG | + | chr4_2:46827811-46827830 | Msa0602800:CDS | 35.0% | |
| !! | GACAACAAGAACATCGATTT+CGG | - | chr4_2:46826849-46826868 | None:intergenic | 35.0% |
| AGTGTACAATATCACTGGAA+TGG | + | chr4_2:46826946-46826965 | Msa0602800:CDS | 35.0% | |
| GTGTACAATATCACTGGAAT+GGG | + | chr4_2:46826947-46826966 | Msa0602800:CDS | 35.0% | |
| ATCATTGATCTATCATTGCC+AGG | - | chr4_2:46827082-46827101 | None:intergenic | 35.0% | |
| ACAATTATACGAGTCATCTC+TGG | - | chr4_2:46827221-46827240 | None:intergenic | 35.0% | |
| TTTATCGAAAACTCTCCCAT+TGG | + | chr4_2:46827282-46827301 | Msa0602800:CDS | 35.0% | |
| AACCTAAGAAGTTCTCTTAC+TGG | - | chr4_2:46827361-46827380 | None:intergenic | 35.0% | |
| AAGAGAACTTCTTAGGTTTC+TGG | + | chr4_2:46827363-46827382 | Msa0602800:CDS | 35.0% | |
| !! | TCTAGTTCTAAGTCTTCTAG+TGG | + | chr4_2:46827424-46827443 | Msa0602800:CDS | 35.0% |
| AAAGCAGTGATTGATGGAAT+TGG | + | chr4_2:46827523-46827542 | Msa0602800:CDS | 35.0% | |
| ! | AGAATGACACTACATCGTTT+TGG | + | chr4_2:46827586-46827605 | Msa0602800:CDS | 35.0% |
| AGAGGCTTAAAAAAGGTGAT+AGG | + | chr4_2:46827662-46827681 | Msa0602800:CDS | 35.0% | |
| GAGGCTTAAAAAAGGTGATA+GGG | + | chr4_2:46827663-46827682 | Msa0602800:CDS | 35.0% | |
| ! | TTTATGATAAGCTTTGGTGC+TGG | + | chr4_2:46827688-46827707 | Msa0602800:CDS | 35.0% |
| ATGTTGGAGATGCAAATGTT+TGG | + | chr4_2:46827749-46827768 | Msa0602800:CDS | 35.0% | |
| TGTTGGAGATGCAAATGTTT+GGG | + | chr4_2:46827750-46827769 | Msa0602800:CDS | 35.0% | |
| AATCCTTTCATGGAGAAGTA+TGG | + | chr4_2:46827811-46827830 | Msa0602800:CDS | 35.0% | |
| CTCAAAGCCATTGTAAGTTG+CGG | + | chr4_2:46826680-46826699 | Msa0602800:CDS | 40.0% | |
| GCCTTCAATGACATTTCTTG+GGG | - | chr4_2:46826726-46826745 | None:intergenic | 40.0% | |
| GGCCTTCAATGACATTTCTT+GGG | - | chr4_2:46826727-46826746 | None:intergenic | 40.0% | |
| !! | AAGAACATCGATTTCGGAAG+GGG | - | chr4_2:46826843-46826862 | None:intergenic | 40.0% |
| !! | CAAGAACATCGATTTCGGAA+GGG | - | chr4_2:46826844-46826863 | None:intergenic | 40.0% |
| !! | ACAAGAACATCGATTTCGGA+AGG | - | chr4_2:46826845-46826864 | None:intergenic | 40.0% |
| ATGATAAGAGACGACAGTGA+GGG | - | chr4_2:46826896-46826915 | None:intergenic | 40.0% | |
| AATGATAAGAGACGACAGTG+AGG | - | chr4_2:46826897-46826916 | None:intergenic | 40.0% | |
| CAGAGTCTCTTAGTCCAAAT+TGG | + | chr4_2:46827053-46827072 | Msa0602800:CDS | 40.0% | |
| CTTAGTCCAAATTGGTATCC+TGG | + | chr4_2:46827061-46827080 | Msa0602800:CDS | 40.0% | |
| TCATTGCCAGGATACCAATT+TGG | - | chr4_2:46827070-46827089 | None:intergenic | 40.0% | |
| ! | CATGCTCGTCTTCCTTTTTA+AGG | - | chr4_2:46827246-46827265 | None:intergenic | 40.0% |
| CTTAAAAAGGAAGACGAGCA+TGG | + | chr4_2:46827244-46827263 | Msa0602800:CDS | 40.0% | |
| AAGCTCTTGTTGCTACCAAT+GGG | - | chr4_2:46827300-46827319 | None:intergenic | 40.0% | |
| AAAGCTCTTGTTGCTACCAA+TGG | - | chr4_2:46827301-46827320 | None:intergenic | 40.0% | |
| TGCCAGTAAGAGAACTTCTT+AGG | + | chr4_2:46827356-46827375 | Msa0602800:CDS | 40.0% | |
| !! | AGTTCTAAGTCTTCTAGTGG+TGG | + | chr4_2:46827427-46827446 | Msa0602800:CDS | 40.0% |
| !! | GATCATTTTTGCCTCCATAC+AGG | + | chr4_2:46827496-46827515 | Msa0602800:CDS | 40.0% |
| ! | TGGTAGTTTGTGGTATGTGT+TGG | + | chr4_2:46827621-46827640 | Msa0602800:CDS | 40.0% |
| ! | GGTAGTTTGTGGTATGTGTT+GGG | + | chr4_2:46827622-46827641 | Msa0602800:CDS | 40.0% |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | + | chr4_2:46827623-46827642 | Msa0602800:CDS | 40.0% |
| GGTACATGGAAGCAAAAAAG+AGG | + | chr4_2:46827644-46827663 | Msa0602800:CDS | 40.0% | |
| TGGGAAGTGATGAAAGATGT+TGG | + | chr4_2:46827733-46827752 | Msa0602800:CDS | 40.0% | |
| AAAGGATTGATCAACGACTC+TGG | - | chr4_2:46827799-46827818 | None:intergenic | 40.0% | |
| GTCGTTGATCAATCCTTTCA+TGG | + | chr4_2:46827801-46827820 | Msa0602800:CDS | 40.0% | |
| CAACCATACTTCTCCATGAA+AGG | - | chr4_2:46827817-46827836 | None:intergenic | 40.0% | |
| ! | CTTTCATGGAGAAGTATGGT+TGG | + | chr4_2:46827815-46827834 | Msa0602800:CDS | 40.0% |
| CTCAAAGCCATTGTAAGTTG+CGG | + | chr4_2:46826680-46826699 | Msa0602800:CDS | 40.0% | |
| GCCTTCAATGACATTTCTTG+GGG | - | chr4_2:46826726-46826745 | None:intergenic | 40.0% | |
| GGCCTTCAATGACATTTCTT+GGG | - | chr4_2:46826727-46826746 | None:intergenic | 40.0% | |
| !! | AAGAACATCGATTTCGGAAG+GGG | - | chr4_2:46826843-46826862 | None:intergenic | 40.0% |
| !! | CAAGAACATCGATTTCGGAA+GGG | - | chr4_2:46826844-46826863 | None:intergenic | 40.0% |
| !! | ACAAGAACATCGATTTCGGA+AGG | - | chr4_2:46826845-46826864 | None:intergenic | 40.0% |
| ATGATAAGAGACGACAGTGA+GGG | - | chr4_2:46826896-46826915 | None:intergenic | 40.0% | |
| AATGATAAGAGACGACAGTG+AGG | - | chr4_2:46826897-46826916 | None:intergenic | 40.0% | |
| CAGAGTCTCTTAGTCCAAAT+TGG | + | chr4_2:46827053-46827072 | Msa0602800:CDS | 40.0% | |
| CTTAGTCCAAATTGGTATCC+TGG | + | chr4_2:46827061-46827080 | Msa0602800:CDS | 40.0% | |
| TCATTGCCAGGATACCAATT+TGG | - | chr4_2:46827070-46827089 | None:intergenic | 40.0% | |
| ! | CATGCTCGTCTTCCTTTTTA+AGG | - | chr4_2:46827246-46827265 | None:intergenic | 40.0% |
| CTTAAAAAGGAAGACGAGCA+TGG | + | chr4_2:46827244-46827263 | Msa0602800:CDS | 40.0% | |
| AAGCTCTTGTTGCTACCAAT+GGG | - | chr4_2:46827300-46827319 | None:intergenic | 40.0% | |
| AAAGCTCTTGTTGCTACCAA+TGG | - | chr4_2:46827301-46827320 | None:intergenic | 40.0% | |
| TGCCAGTAAGAGAACTTCTT+AGG | + | chr4_2:46827356-46827375 | Msa0602800:CDS | 40.0% | |
| !! | AGTTCTAAGTCTTCTAGTGG+TGG | + | chr4_2:46827427-46827446 | Msa0602800:CDS | 40.0% |
| !! | GATCATTTTTGCCTCCATAC+AGG | + | chr4_2:46827496-46827515 | Msa0602800:CDS | 40.0% |
| ! | TGGTAGTTTGTGGTATGTGT+TGG | + | chr4_2:46827621-46827640 | Msa0602800:CDS | 40.0% |
| ! | GGTAGTTTGTGGTATGTGTT+GGG | + | chr4_2:46827622-46827641 | Msa0602800:CDS | 40.0% |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | + | chr4_2:46827623-46827642 | Msa0602800:CDS | 40.0% |
| GGTACATGGAAGCAAAAAAG+AGG | + | chr4_2:46827644-46827663 | Msa0602800:CDS | 40.0% | |
| TGGGAAGTGATGAAAGATGT+TGG | + | chr4_2:46827733-46827752 | Msa0602800:CDS | 40.0% | |
| AAAGGATTGATCAACGACTC+TGG | - | chr4_2:46827799-46827818 | None:intergenic | 40.0% | |
| GTCGTTGATCAATCCTTTCA+TGG | + | chr4_2:46827801-46827820 | Msa0602800:CDS | 40.0% | |
| CAACCATACTTCTCCATGAA+AGG | - | chr4_2:46827817-46827836 | None:intergenic | 40.0% | |
| ! | CTTTCATGGAGAAGTATGGT+TGG | + | chr4_2:46827815-46827834 | Msa0602800:CDS | 40.0% |
| ! | ATGCTAGGGACTGAGTTTTG+TGG | + | chr4_2:46826605-46826624 | Msa0602800:CDS | 45.0% |
| GCCCCAAGAAATGTCATTGA+AGG | + | chr4_2:46826722-46826741 | Msa0602800:CDS | 45.0% | |
| CGGCCTTCAATGACATTTCT+TGG | - | chr4_2:46826728-46826747 | None:intergenic | 45.0% | |
| GGGAAATAGCTGATCTTGCA+AGG | - | chr4_2:46826823-46826842 | None:intergenic | 45.0% | |
| !! | GCCAATTGTCTTTTTCGCAC+CGG | + | chr4_2:46827106-46827125 | Msa0602800:CDS | 45.0% |
| ACCGGTGCGAAAAAGACAAT+TGG | - | chr4_2:46827110-46827129 | None:intergenic | 45.0% | |
| !! | AATTGTCTTTTTCGCACCGG+TGG | + | chr4_2:46827109-46827128 | Msa0602800:CDS | 45.0% |
| CAAAAGAATGGCACAACCAC+CGG | - | chr4_2:46827128-46827147 | None:intergenic | 45.0% | |
| TGTTTAGTCAGGACGCATCA+CGG | + | chr4_2:46827193-46827212 | Msa0602800:CDS | 45.0% | |
| AAAGGAAGACGAGCATGGTA+CGG | + | chr4_2:46827249-46827268 | Msa0602800:CDS | 45.0% | |
| TCTAAGTCTTCTAGTGGTGG+AGG | + | chr4_2:46827430-46827449 | Msa0602800:CDS | 45.0% | |
| ! | CATTTTTGCCTCCATACAGG+AGG | + | chr4_2:46827499-46827518 | Msa0602800:CDS | 45.0% |
| !! | TCACTGCTTTTCCTCCTGTA+TGG | - | chr4_2:46827513-46827532 | None:intergenic | 45.0% |
| GGAGGAAAAGCAGTGATTGA+TGG | + | chr4_2:46827517-46827536 | Msa0602800:CDS | 45.0% | |
| ! | CGATGTAGTGTCATTCTTGC+TGG | - | chr4_2:46827583-46827602 | None:intergenic | 45.0% |
| !! | CGTTTTGGTAACACTTCTGC+TGG | + | chr4_2:46827601-46827620 | Msa0602800:CDS | 45.0% |
| ACACTTCTGCTGGTAGTTTG+TGG | + | chr4_2:46827611-46827630 | Msa0602800:CDS | 45.0% | |
| ! | TGGTTGGCTCAATGAAGTTG+AGG | + | chr4_2:46827831-46827850 | Msa0602800:CDS | 45.0% |
| ! | ATGCTAGGGACTGAGTTTTG+TGG | + | chr4_2:46826605-46826624 | Msa0602800:CDS | 45.0% |
| GCCCCAAGAAATGTCATTGA+AGG | + | chr4_2:46826722-46826741 | Msa0602800:CDS | 45.0% | |
| CGGCCTTCAATGACATTTCT+TGG | - | chr4_2:46826728-46826747 | None:intergenic | 45.0% | |
| GGGAAATAGCTGATCTTGCA+AGG | - | chr4_2:46826823-46826842 | None:intergenic | 45.0% | |
| !! | GCCAATTGTCTTTTTCGCAC+CGG | + | chr4_2:46827106-46827125 | Msa0602800:CDS | 45.0% |
| ACCGGTGCGAAAAAGACAAT+TGG | - | chr4_2:46827110-46827129 | None:intergenic | 45.0% | |
| !! | AATTGTCTTTTTCGCACCGG+TGG | + | chr4_2:46827109-46827128 | Msa0602800:CDS | 45.0% |
| CAAAAGAATGGCACAACCAC+CGG | - | chr4_2:46827128-46827147 | None:intergenic | 45.0% | |
| TGTTTAGTCAGGACGCATCA+CGG | + | chr4_2:46827193-46827212 | Msa0602800:CDS | 45.0% | |
| AAAGGAAGACGAGCATGGTA+CGG | + | chr4_2:46827249-46827268 | Msa0602800:CDS | 45.0% | |
| TCTAAGTCTTCTAGTGGTGG+AGG | + | chr4_2:46827430-46827449 | Msa0602800:CDS | 45.0% | |
| ! | CATTTTTGCCTCCATACAGG+AGG | + | chr4_2:46827499-46827518 | Msa0602800:CDS | 45.0% |
| !! | TCACTGCTTTTCCTCCTGTA+TGG | - | chr4_2:46827513-46827532 | None:intergenic | 45.0% |
| GGAGGAAAAGCAGTGATTGA+TGG | + | chr4_2:46827517-46827536 | Msa0602800:CDS | 45.0% | |
| ! | CGATGTAGTGTCATTCTTGC+TGG | - | chr4_2:46827583-46827602 | None:intergenic | 45.0% |
| !! | CGTTTTGGTAACACTTCTGC+TGG | + | chr4_2:46827601-46827620 | Msa0602800:CDS | 45.0% |
| ACACTTCTGCTGGTAGTTTG+TGG | + | chr4_2:46827611-46827630 | Msa0602800:CDS | 45.0% | |
| ! | TGGTTGGCTCAATGAAGTTG+AGG | + | chr4_2:46827831-46827850 | Msa0602800:CDS | 45.0% |
| GCCATTGTAAGTTGCGGCAT+TGG | + | chr4_2:46826686-46826705 | Msa0602800:CDS | 50.0% | |
| GCCAATGCCGCAACTTACAA+TGG | - | chr4_2:46826690-46826709 | None:intergenic | 50.0% | |
| AGATCCCGTCGTTCAGTGTT+GGG | - | chr4_2:46826760-46826779 | None:intergenic | 50.0% | |
| !! | CTGCTTTTCCTCCTGTATGG+AGG | - | chr4_2:46827510-46827529 | None:intergenic | 50.0% |
| GTGGTATGTGTTGGGGTACA+TGG | + | chr4_2:46827630-46827649 | Msa0602800:CDS | 50.0% | |
| GGATTGATCAACGACTCTGG+TGG | - | chr4_2:46827796-46827815 | None:intergenic | 50.0% | |
| GCCATTGTAAGTTGCGGCAT+TGG | + | chr4_2:46826686-46826705 | Msa0602800:CDS | 50.0% | |
| GCCAATGCCGCAACTTACAA+TGG | - | chr4_2:46826690-46826709 | None:intergenic | 50.0% | |
| AGATCCCGTCGTTCAGTGTT+GGG | - | chr4_2:46826760-46826779 | None:intergenic | 50.0% | |
| !! | CTGCTTTTCCTCCTGTATGG+AGG | - | chr4_2:46827510-46827529 | None:intergenic | 50.0% |
| GTGGTATGTGTTGGGGTACA+TGG | + | chr4_2:46827630-46827649 | Msa0602800:CDS | 50.0% | |
| GGATTGATCAACGACTCTGG+TGG | - | chr4_2:46827796-46827815 | None:intergenic | 50.0% | |
| ! | TCAGTGTTGGGGATGCTTCG+CGG | - | chr4_2:46826748-46826767 | None:intergenic | 55.0% |
| GCATCCCCAACACTGAACGA+CGG | + | chr4_2:46826752-46826771 | Msa0602800:CDS | 55.0% | |
| CATCCCCAACACTGAACGAC+GGG | + | chr4_2:46826753-46826772 | Msa0602800:CDS | 55.0% | |
| GATCCCGTCGTTCAGTGTTG+GGG | - | chr4_2:46826759-46826778 | None:intergenic | 55.0% | |
| GAGATCCCGTCGTTCAGTGT+TGG | - | chr4_2:46826761-46826780 | None:intergenic | 55.0% | |
| GAACGACGGGATCTCAGAGA+TGG | + | chr4_2:46826766-46826785 | Msa0602800:CDS | 55.0% | |
| AGACGACAGTGAGGGAACAG+AGG | - | chr4_2:46826888-46826907 | None:intergenic | 55.0% | |
| GAAGACGAGCATGGTACGGT+TGG | + | chr4_2:46827253-46827272 | Msa0602800:CDS | 55.0% | |
| ! | TCAGTGTTGGGGATGCTTCG+CGG | - | chr4_2:46826748-46826767 | None:intergenic | 55.0% |
| GCATCCCCAACACTGAACGA+CGG | + | chr4_2:46826752-46826771 | Msa0602800:CDS | 55.0% | |
| CATCCCCAACACTGAACGAC+GGG | + | chr4_2:46826753-46826772 | Msa0602800:CDS | 55.0% | |
| GATCCCGTCGTTCAGTGTTG+GGG | - | chr4_2:46826759-46826778 | None:intergenic | 55.0% | |
| GAGATCCCGTCGTTCAGTGT+TGG | - | chr4_2:46826761-46826780 | None:intergenic | 55.0% | |
| GAACGACGGGATCTCAGAGA+TGG | + | chr4_2:46826766-46826785 | Msa0602800:CDS | 55.0% | |
| AGACGACAGTGAGGGAACAG+AGG | - | chr4_2:46826888-46826907 | None:intergenic | 55.0% | |
| GAAGACGAGCATGGTACGGT+TGG | + | chr4_2:46827253-46827272 | Msa0602800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 46826605 | 46827891 | 46826605 | ID=Msa0602800;Name=Msa0602800 |
| chr4_2 | mRNA | 46826605 | 46827891 | 46826605 | ID=Msa0602800-mRNA-1;Parent=Msa0602800;Name=Msa0602800-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|428 |
| chr4_2 | exon | 46826605 | 46827891 | 46826605 | ID=Msa0602800-mRNA-1:exon:10681;Parent=Msa0602800-mRNA-1 |
| chr4_2 | CDS | 46826605 | 46827891 | 46826605 | ID=Msa0602800-mRNA-1:cds;Parent=Msa0602800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
