AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281570 MtrunA17_Chr2g0295801 96.462 424 14 1 1 424 291 713 0.0 824
Msa0281570 MtrunA17_Chr1g0196911 26.269 335 229 6 82 409 698 1021 6.55e-24 105
Msa0281570 MtrunA17_Chr8g0390311 23.100 329 237 5 82 404 552 870 3.18e-21 97.1
Msa0281570 MtrunA17_Chr2g0291731 22.590 332 243 6 82 404 456 782 9.83e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281570 AT3G06880.5 51.697 383 179 4 52 430 453 833 1.34e-119 377
Msa0281570 AT3G06880.3 51.697 383 179 4 52 430 453 833 1.65e-119 377
Msa0281570 AT3G06880.1 51.697 383 179 4 52 430 453 833 1.72e-119 377
Msa0281570 AT3G06880.2 51.697 383 179 4 52 430 453 833 2.74e-119 377
Msa0281570 AT3G06880.4 51.697 383 179 4 52 430 453 833 3.42e-119 377

Find 96 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATCAGGTCATGCTTTA+TGG 0.194808 2_3:+17042602 Msa0281570:five_prime_UTR
TTCATTAAAGGATGTGATTT+TGG 0.214261 2_3:+17043796 Msa0281570:CDS
GTCCTATCCAATCTTTATTA+TGG 0.234183 2_3:+17042179 Msa0281570:five_prime_UTR
TATAGAAGATGTGAAGAAAA+AGG 0.248826 2_3:+17043916 Msa0281570:CDS
CAGAGAATTCAAAGAATTCT+TGG 0.259484 2_3:-17042148 None:intergenic
AACTAATTATGGTTCATTAA+AGG 0.283072 2_3:+17043784 Msa0281570:CDS
AGTTCATCAGGAACTAATTA+TGG 0.287185 2_3:+17043773 Msa0281570:CDS
AAGCTGTGCAGATTCTTCTA+AGG 0.322117 2_3:+17045339 Msa0281570:CDS
CAACAAACCAAGTAATGATT+TGG 0.324417 2_3:-17042329 None:intergenic
CATACAATCTCTACTAATAT+TGG 0.326616 2_3:-17044052 None:intergenic
ACTTATTCATATAAAGTATC+TGG 0.348733 2_3:+17045671 Msa0281570:three_prime_UTR
TCATCTTCATCAAGCATTGC+TGG 0.354572 2_3:-17042290 None:intergenic
AAACTCAAGCGCCGTGCATT+TGG 0.358216 2_3:-17044401 None:intergenic
TGGTTTCTCCGAAGCTTGTT+TGG 0.374157 2_3:+17042432 Msa0281570:five_prime_UTR
GAAGCATGAAAATAGAAGTT+TGG 0.375640 2_3:+17042493 Msa0281570:five_prime_UTR
AGGTTAAAAGATCTTTGTTC+CGG 0.382867 2_3:-17042239 None:intergenic
TCCAGTGTATTTATATCTAT+AGG 0.389457 2_3:-17044022 None:intergenic
TCCATTCTATCAAATCTTGC+TGG 0.393512 2_3:+17045404 Msa0281570:CDS
GTCTCTAAAAGGTGTAGAAA+TGG 0.396006 2_3:-17044364 None:intergenic
GAATAAGTATCAGAAAATAT+TGG 0.399714 2_3:-17045656 None:intergenic
TTCTAACAACAATAATTTCA+AGG 0.406782 2_3:+17043882 Msa0281570:CDS
GGAGTGTTTGGTGTATTATC+AGG 0.408403 2_3:+17042589 Msa0281570:five_prime_UTR
TGATAGACCTCAAATACATA+TGG 0.412630 2_3:+17042024 Msa0281570:five_prime_UTR
GAGAGTTTAATCAGTTCATC+AGG 0.417394 2_3:+17043761 Msa0281570:CDS
TTCAATTCCAAATCATTACT+TGG 0.421927 2_3:+17042322 Msa0281570:five_prime_UTR
CAAGATGCATATCAAACTTA+AGG 0.426397 2_3:+17042117 Msa0281570:five_prime_UTR
AGAAGATACACAGCTGGTAT+TGG 0.428215 2_3:-17043221 None:intergenic
GTCAATGCCATAATAAAGAT+TGG 0.433375 2_3:-17042186 None:intergenic
GGGTGCTAGTTTCAATCAAC+AGG 0.436268 2_3:+17042045 Msa0281570:five_prime_UTR
ATAGGTTAGCAGCTAAAATC+TGG 0.438837 2_3:-17044681 None:intergenic
CTAGCACCCATATGTATTTG+AGG 0.440296 2_3:-17042031 None:intergenic
ATCTTGCTGGCACATACTCT+TGG 0.442789 2_3:+17045417 Msa0281570:CDS
GCAGCTAAAATCTGGTGATC+AGG 0.446213 2_3:-17044673 None:intergenic
GGTGATCAGGTTGTAATTGA+TGG 0.448426 2_3:-17044660 None:intergenic
CTCAACTTCGAAAGAGGAAA+AGG 0.453305 2_3:+17043838 Msa0281570:CDS
AATTCATTCCAAACAAGCTT+CGG 0.453656 2_3:-17042440 None:intergenic
ATGTGTCTAACTGAATCAAT+AGG 0.453825 2_3:-17044699 None:intergenic
AATCAATGAAGCAATTGTTA+AGG 0.454034 2_3:+17042547 Msa0281570:five_prime_UTR
AAGGAGGTACAAGGAGTGTT+TGG 0.460275 2_3:+17042577 Msa0281570:five_prime_UTR
GTGGAAGATAAATGTTGTCT+AGG 0.466499 2_3:-17041898 None:intergenic
TGATGAGAGAGATGCTGAGA+AGG 0.469174 2_3:-17041976 None:intergenic
ATCACATCTTGAGGATCCAT+TGG 0.473144 2_3:-17043431 None:intergenic
AGGTGTAGAAATGGAGCAAG+AGG 0.476498 2_3:-17044355 None:intergenic
TGCAATACAATCAAAACATC+CGG 0.481812 2_3:+17042220 Msa0281570:five_prime_UTR
TTTCCATTTGTTCAGATCAT+CGG 0.482821 2_3:+17044567 Msa0281570:intron
ACATGATACGAAACTTCAAC+TGG 0.486726 2_3:+17045507 Msa0281570:CDS
TAAAGCAACAACATCTTATG+TGG 0.497872 2_3:-17043513 None:intergenic
AAAGATTGGATAGGACTGAT+TGG 0.500339 2_3:-17042172 None:intergenic
GCATGGCTTCTGAGAAAGAC+AGG 0.504014 2_3:+17045461 Msa0281570:CDS
TCAGTTGTTAGGAAGCTTCA+AGG 0.508700 2_3:+17042368 Msa0281570:five_prime_UTR
TCATCTTCGAACTTTCTTCG+CGG 0.514629 2_3:-17043676 None:intergenic
AGTGATCTCAACTTCGAAAG+AGG 0.517243 2_3:+17043832 Msa0281570:CDS
CGATTTAAATTGCCGTGTCG+AGG 0.517568 2_3:+17043568 Msa0281570:CDS
TGCTTGCATGATCAAAGAGA+TGG 0.523620 2_3:-17043628 None:intergenic
GCCAGCAAGATTTGATAGAA+TGG 0.525369 2_3:-17045405 None:intergenic
TGCTTTATGGAGAGATTCCA+TGG 0.525779 2_3:+17042615 Msa0281570:five_prime_UTR
TGGTCAATCTGCTTGAATCA+AGG 0.526245 2_3:-17043487 None:intergenic
TCCTATAGATATAAATACAC+TGG 0.530362 2_3:+17044021 Msa0281570:CDS
GGAAGCTTCAAGGTGATGAA+TGG 0.531953 2_3:+17042378 Msa0281570:five_prime_UTR
CATTTCTAGTAACCAACAAA+AGG 0.539460 2_3:+17041942 Msa0281570:five_prime_UTR
CTGGTTGGATCAGAGTCTAC+AGG 0.540517 2_3:+17045526 Msa0281570:CDS
GTATTTATATCTATAGGAGA+TGG 0.541395 2_3:-17044016 None:intergenic
TTGCTTTATCGATCTCGAAA+CGG 0.542122 2_3:+17043528 Msa0281570:five_prime_UTR
GATAGACCTCAAATACATAT+GGG 0.547038 2_3:+17042025 Msa0281570:five_prime_UTR
ATTGATTCAGTTAGACACAT+TGG 0.549208 2_3:+17044702 Msa0281570:CDS
TGTTCTTGCATCACATCTTG+AGG 0.552144 2_3:-17043440 None:intergenic
TCACATCTTGAGGATCCATT+GGG 0.555382 2_3:-17043430 None:intergenic
TGAAGCAATTGTTAAGGAGA+AGG 0.556575 2_3:+17042553 Msa0281570:five_prime_UTR
GGAGAAGGCAAGGAGGTACA+AGG 0.559331 2_3:+17042568 Msa0281570:five_prime_UTR
GCTGGCACATACTCTTGGAC+AGG 0.559819 2_3:+17045422 Msa0281570:CDS
AGCTGTGCAGATTCTTCTAA+GGG 0.560935 2_3:+17045340 Msa0281570:CDS
GTATGGGAAGGTTCACCCAA+TGG 0.567986 2_3:+17043415 Msa0281570:intron
GATACGAAACTTCAACTGGT+TGG 0.582939 2_3:+17045511 Msa0281570:CDS
TGTTAGTTCTTTGAATTCTG+AGG 0.586035 2_3:+17042520 Msa0281570:five_prime_UTR
AAAAGACTTTCACAAAGATG+AGG 0.593822 2_3:-17042467 None:intergenic
AAATGTTCGTGCCAAATGCA+CGG 0.597360 2_3:+17044390 Msa0281570:CDS
CTACAGGTAAGCTTCAAAGA+AGG 0.598282 2_3:+17045542 Msa0281570:CDS
TGCCATAATAAAGATTGGAT+AGG 0.603150 2_3:-17042181 None:intergenic
AACAACATCTTATGTGGACC+TGG 0.603896 2_3:-17043507 None:intergenic
CGGCTATTAATCTGCTGCAG+AGG 0.610136 2_3:+17044587 Msa0281570:CDS
CAATTGTTAAGGAGAAGGCA+AGG 0.616510 2_3:+17042558 Msa0281570:five_prime_UTR
TGAAGTAGAAGATACACAGC+TGG 0.616780 2_3:-17043227 None:intergenic
AGTTCCCCTCGTGTTCTCAG+TGG 0.617224 2_3:+17044217 Msa0281570:CDS
GCAAGCAGAAATCATAGACT+CGG 0.620764 2_3:+17043644 Msa0281570:CDS
TTGATTCAAGCAGATTGACC+AGG 0.623847 2_3:+17043489 Msa0281570:five_prime_UTR
CTGCAATAACTGCTCCACCA+TGG 0.624772 2_3:-17042632 None:intergenic
AGGAAATCTTATGCATACCA+AGG 0.635680 2_3:+17044428 Msa0281570:CDS
TCAAAGAGATGGAATTCTAG+TGG 0.647117 2_3:-17043617 None:intergenic
GAGAATCATATACAGCTGCA+TGG 0.660155 2_3:+17045444 Msa0281570:CDS
ATAAGTCCACTGAGAACACG+AGG 0.674908 2_3:-17044223 None:intergenic
CGATTAATAAATCCTCGACA+CGG 0.692393 2_3:-17043580 None:intergenic
ATCATCAATGATGCTGCATG+AGG 0.714753 2_3:-17044133 None:intergenic
AAGTCCACTGAGAACACGAG+GGG 0.726997 2_3:-17044221 None:intergenic
TAAGTCCACTGAGAACACGA+GGG 0.736103 2_3:-17044222 None:intergenic
TTGTTAAGGAGAAGGCAAGG+AGG 0.739913 2_3:+17042561 Msa0281570:five_prime_UTR
TTTATGGAGAGATTCCATGG+TGG 0.847791 2_3:+17042618 Msa0281570:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTAAAAATTTACATT+TGG + chr2_3:17045189-17045208 Msa0281570:intron 10.0%
!!! AGTATAATATTTTAATGAAA+GGG - chr2_3:17045240-17045259 None:intergenic 10.0%
!!! AAGTATAATATTTTAATGAA+AGG - chr2_3:17045241-17045260 None:intergenic 10.0%
!! TTAAAATATTATACTTGAAT+AGG + chr2_3:17045245-17045264 Msa0281570:intron 10.0%
!! ATAAGAAGAGATAATATTAT+TGG + chr2_3:17043087-17043106 Msa0281570:intron 15.0%
!!! TCAGAAAAATTTAAGTTTAT+AGG + chr2_3:17044738-17044757 Msa0281570:intron 15.0%
!! AACTAATTATGGTTCATTAA+AGG + chr2_3:17043784-17043803 Msa0281570:CDS 20.0%
!! TTCTAACAACAATAATTTCA+AGG + chr2_3:17043882-17043901 Msa0281570:CDS 20.0%
!!! TCTTTCATTTGTATTTTGTT+TGG + chr2_3:17044471-17044490 Msa0281570:intron 20.0%
!! TGCTCAAATTTCTAATAAAT+TGG - chr2_3:17044900-17044919 None:intergenic 20.0%
!!! TCCTTTTTTTTTGAAGTATT+GGG - chr2_3:17045612-17045631 None:intergenic 20.0%
!! GAATAAGTATCAGAAAATAT+TGG - chr2_3:17045659-17045678 None:intergenic 20.0%
!!! ACTTATTCATATAAAGTATC+TGG + chr2_3:17045671-17045690 Msa0281570:three_prime_UTR 20.0%
! TTCAATTCCAAATCATTACT+TGG + chr2_3:17042322-17042341 Msa0281570:five_prime_UTR 25.0%
!! ATTTTTATCTCTCAGTTGTT+AGG + chr2_3:17042357-17042376 Msa0281570:five_prime_UTR 25.0%
! AATCAATGAAGCAATTGTTA+AGG + chr2_3:17042547-17042566 Msa0281570:five_prime_UTR 25.0%
!!! TTTTGAAGTTCAATAGTTTG+AGG + chr2_3:17042710-17042729 Msa0281570:intron 25.0%
! AATAGTTTGAGGAATAAAGT+AGG + chr2_3:17042721-17042740 Msa0281570:intron 25.0%
! ATAGTTTGAGGAATAAAGTA+GGG + chr2_3:17042722-17042741 Msa0281570:intron 25.0%
! GAAATGTTAGTTATTATGCA+AGG + chr2_3:17042759-17042778 Msa0281570:intron 25.0%
! ATCACTTGGTTTATTATGAA+AGG + chr2_3:17042944-17042963 Msa0281570:intron 25.0%
! GAAAGGTTAATTAGCTAAAT+AGG + chr2_3:17042961-17042980 Msa0281570:intron 25.0%
! TTATTGCAAACAAACATGAA+TGG + chr2_3:17042997-17043016 Msa0281570:intron 25.0%
! AGATATGATTTCTTTAAGCT+AGG + chr2_3:17043123-17043142 Msa0281570:intron 25.0%
! ATATTTAAGGGAAACAAAAG+TGG - chr2_3:17043385-17043404 None:intergenic 25.0%
!!! GTTTCCCTTAAATATTTTTG+TGG + chr2_3:17043390-17043409 Msa0281570:intron 25.0%
! ACTGCCACAAAAATATTTAA+GGG - chr2_3:17043397-17043416 None:intergenic 25.0%
! TACTGCCACAAAAATATTTA+AGG - chr2_3:17043398-17043417 None:intergenic 25.0%
!!! TAAATATTTTTGTGGCAGTA+TGG + chr2_3:17043398-17043417 Msa0281570:intron 25.0%
!!! AAATATTTTTGTGGCAGTAT+GGG + chr2_3:17043399-17043418 Msa0281570:intron 25.0%
! CAAACATCATTAGAAAAATG+TGG + chr2_3:17043704-17043723 Msa0281570:CDS 25.0%
!! TTCATTAAAGGATGTGATTT+TGG + chr2_3:17043796-17043815 Msa0281570:CDS 25.0%
! TATAGAAGATGTGAAGAAAA+AGG + chr2_3:17043916-17043935 Msa0281570:CDS 25.0%
! ATAGAAGATGTGAAGAAAAA+GGG + chr2_3:17043917-17043936 Msa0281570:CDS 25.0%
! GTATTTATATCTATAGGAGA+TGG - chr2_3:17044019-17044038 None:intergenic 25.0%
! TCCTATAGATATAAATACAC+TGG + chr2_3:17044021-17044040 Msa0281570:CDS 25.0%
! TCCAGTGTATTTATATCTAT+AGG - chr2_3:17044025-17044044 None:intergenic 25.0%
! CATACAATCTCTACTAATAT+TGG - chr2_3:17044055-17044074 None:intergenic 25.0%
! TGCTAAAAATAACATGCATT+TGG + chr2_3:17044186-17044205 Msa0281570:CDS 25.0%
! CAAAATACAAATGAAAGAAC+TGG - chr2_3:17044469-17044488 None:intergenic 25.0%
! GAATGTAATTGAGTAGAATT+TGG + chr2_3:17044493-17044512 Msa0281570:intron 25.0%
!! TTCATGATTTTTGATATTGC+TGG + chr2_3:17044968-17044987 Msa0281570:intron 25.0%
!!! TTACAGAAGTTTTTTAGATG+CGG - chr2_3:17045076-17045095 None:intergenic 25.0%
!!! AATTTTTAAAAAACGGTTCG+AGG - chr2_3:17045183-17045202 None:intergenic 25.0%
!!! CCTTTTTTTTTGAAGTATTG+GGG - chr2_3:17045611-17045630 None:intergenic 25.0%
!!! CTCCTTTTTTTTTGAAGTAT+TGG - chr2_3:17045613-17045632 None:intergenic 25.0%
!!! ATGTTGATTTTTGAGCACTT+GGG - chr2_3:17041925-17041944 None:intergenic 30.0%
!!! AATGTTGATTTTTGAGCACT+TGG - chr2_3:17041926-17041945 None:intergenic 30.0%
!! CATTTCTAGTAACCAACAAA+AGG + chr2_3:17041942-17041961 Msa0281570:five_prime_UTR 30.0%
TGATAGACCTCAAATACATA+TGG + chr2_3:17042024-17042043 Msa0281570:five_prime_UTR 30.0%
GATAGACCTCAAATACATAT+GGG + chr2_3:17042025-17042044 Msa0281570:five_prime_UTR 30.0%
CAAGATGCATATCAAACTTA+AGG + chr2_3:17042117-17042136 Msa0281570:five_prime_UTR 30.0%
CAGAGAATTCAAAGAATTCT+TGG - chr2_3:17042151-17042170 None:intergenic 30.0%
GTCCTATCCAATCTTTATTA+TGG + chr2_3:17042179-17042198 Msa0281570:five_prime_UTR 30.0%
TGCCATAATAAAGATTGGAT+AGG - chr2_3:17042184-17042203 None:intergenic 30.0%
GTCAATGCCATAATAAAGAT+TGG - chr2_3:17042189-17042208 None:intergenic 30.0%
TGCAATACAATCAAAACATC+CGG + chr2_3:17042220-17042239 Msa0281570:five_prime_UTR 30.0%
AGGTTAAAAGATCTTTGTTC+CGG - chr2_3:17042242-17042261 None:intergenic 30.0%
! GCATTTCTTCTGACTTTTTA+AGG - chr2_3:17042262-17042281 None:intergenic 30.0%
CAACAAACCAAGTAATGATT+TGG - chr2_3:17042332-17042351 None:intergenic 30.0%
AATTCATTCCAAACAAGCTT+CGG - chr2_3:17042443-17042462 None:intergenic 30.0%
AAAAGACTTTCACAAAGATG+AGG - chr2_3:17042470-17042489 None:intergenic 30.0%
GAAGCATGAAAATAGAAGTT+TGG + chr2_3:17042493-17042512 Msa0281570:five_prime_UTR 30.0%
! TGTTAGTTCTTTGAATTCTG+AGG + chr2_3:17042520-17042539 Msa0281570:five_prime_UTR 30.0%
TATTATCAGGTCATGCTTTA+TGG + chr2_3:17042602-17042621 Msa0281570:five_prime_UTR 30.0%
CAATTAAGGTTGAATTGTTC+AGG - chr2_3:17042909-17042928 None:intergenic 30.0%
GATCTCGCAAATTTCAATTA+AGG - chr2_3:17042923-17042942 None:intergenic 30.0%
TAAAGCAACAACATCTTATG+TGG - chr2_3:17043516-17043535 None:intergenic 30.0%
AGTTCATCAGGAACTAATTA+TGG + chr2_3:17043773-17043792 Msa0281570:CDS 30.0%
ATGTGAAGAAAAAGGGTTTA+AGG + chr2_3:17043924-17043943 Msa0281570:CDS 30.0%
! GAACATTTTCTGTCTCTAAA+AGG - chr2_3:17044378-17044397 None:intergenic 30.0%
TTTCCATTTGTTCAGATCAT+CGG + chr2_3:17044567-17044586 Msa0281570:intron 30.0%
ATGTGTCTAACTGAATCAAT+AGG - chr2_3:17044702-17044721 None:intergenic 30.0%
! ATTGATTCAGTTAGACACAT+TGG + chr2_3:17044702-17044721 Msa0281570:CDS 30.0%
TTATCATGAAGAAAGTCCTA+GGG + chr2_3:17044771-17044790 Msa0281570:intron 30.0%
GTAGTTAACAGAATGCAAAT+GGG - chr2_3:17044814-17044833 None:intergenic 30.0%
TGTAGTTAACAGAATGCAAA+TGG - chr2_3:17044815-17044834 None:intergenic 30.0%
!! GAGGTTAATAATTTGCTAAG+AGG + chr2_3:17044836-17044855 Msa0281570:intron 30.0%
AAGTCACTAAATGATACGTT+TGG + chr2_3:17044922-17044941 Msa0281570:intron 30.0%
! TTTGATATTGCTGGCTAATA+TGG + chr2_3:17044977-17044996 Msa0281570:intron 30.0%
! TGTAACGATTTTCTGTTTTG+CGG + chr2_3:17045091-17045110 Msa0281570:intron 30.0%
! TGAACAAGCTTTTATCAGTT+GGG - chr2_3:17045313-17045332 None:intergenic 30.0%
!!! CGTATCATGTTTTGATGATA+GGG - chr2_3:17045497-17045516 None:intergenic 30.0%
!!! TCGTATCATGTTTTGATGAT+AGG - chr2_3:17045498-17045517 None:intergenic 30.0%
CCCCAATACTTCAAAAAAAA+AGG + chr2_3:17045608-17045627 Msa0281570:three_prime_UTR 30.0%
GTGGAAGATAAATGTTGTCT+AGG - chr2_3:17041901-17041920 None:intergenic 35.0%
!!! GAGAAAAGTTAGCCTTTTGT+TGG - chr2_3:17041957-17041976 None:intergenic 35.0%
AAAGATTGGATAGGACTGAT+TGG - chr2_3:17042175-17042194 None:intergenic 35.0%
! GCATTTTCTTCAAGCTGTTT+TGG + chr2_3:17042412-17042431 Msa0281570:five_prime_UTR 35.0%
TGAAGCAATTGTTAAGGAGA+AGG + chr2_3:17042553-17042572 Msa0281570:five_prime_UTR 35.0%
! TTGTTGTTGTCTTAATCCTC+CGG + chr2_3:17042789-17042808 Msa0281570:intron 35.0%
!!! TTCCTGTCAAGTTTTGAACT+CGG + chr2_3:17042879-17042898 Msa0281570:intron 35.0%
AATTTGCGAGATCAATCACT+TGG + chr2_3:17042930-17042949 Msa0281570:intron 35.0%
AGTAACTTACTGATATCGAC+AGG + chr2_3:17043191-17043210 Msa0281570:intron 35.0%
GTAACTTACTGATATCGACA+GGG + chr2_3:17043192-17043211 Msa0281570:intron 35.0%
TTGCTTTATCGATCTCGAAA+CGG + chr2_3:17043528-17043547 Msa0281570:five_prime_UTR 35.0%
CGATTAATAAATCCTCGACA+CGG - chr2_3:17043583-17043602 None:intergenic 35.0%
TCAAAGAGATGGAATTCTAG+TGG - chr2_3:17043620-17043639 None:intergenic 35.0%
GAGAGTTTAATCAGTTCATC+AGG + chr2_3:17043761-17043780 Msa0281570:CDS 35.0%
! CTGCATGCATTTTATGAGAA+TGG - chr2_3:17044296-17044315 None:intergenic 35.0%
! GTCTCTAAAAGGTGTAGAAA+TGG - chr2_3:17044367-17044386 None:intergenic 35.0%
AGGAAATCTTATGCATACCA+AGG + chr2_3:17044428-17044447 Msa0281570:CDS 35.0%
GGTTACATAGTTACATACCT+TGG - chr2_3:17044448-17044467 None:intergenic 35.0%
CTACTAGCTAAAGACATATG+TGG - chr2_3:17044520-17044539 None:intergenic 35.0%
CACATATGTCTTTAGCTAGT+AGG + chr2_3:17044518-17044537 Msa0281570:intron 35.0%
ATAGGTTAGCAGCTAAAATC+TGG - chr2_3:17044684-17044703 None:intergenic 35.0%
CTTATCATGAAGAAAGTCCT+AGG + chr2_3:17044770-17044789 Msa0281570:intron 35.0%
AAGTCCTAGGGAACAAATAT+TGG + chr2_3:17044783-17044802 Msa0281570:intron 35.0%
TGATCCAATATTTGTTCCCT+AGG - chr2_3:17044790-17044809 None:intergenic 35.0%
GCAACAATGACATTCATCAA+AGG + chr2_3:17044858-17044877 Msa0281570:intron 35.0%
ACAATGACATTCATCAAAGG+AGG + chr2_3:17044861-17044880 Msa0281570:intron 35.0%
CATCAAAGGAGGATATCTTA+CGG + chr2_3:17044872-17044891 Msa0281570:intron 35.0%
! CTGAACAAGCTTTTATCAGT+TGG - chr2_3:17045314-17045333 None:intergenic 35.0%
TCCATTCTATCAAATCTTGC+TGG + chr2_3:17045404-17045423 Msa0281570:CDS 35.0%
ACATGATACGAAACTTCAAC+TGG + chr2_3:17045507-17045526 Msa0281570:CDS 35.0%
CTAGCACCCATATGTATTTG+AGG - chr2_3:17042034-17042053 None:intergenic 40.0%
! TCATCTTCATCAAGCATTGC+TGG - chr2_3:17042293-17042312 None:intergenic 40.0%
TCAGTTGTTAGGAAGCTTCA+AGG + chr2_3:17042368-17042387 Msa0281570:five_prime_UTR 40.0%
CAATTGTTAAGGAGAAGGCA+AGG + chr2_3:17042558-17042577 Msa0281570:five_prime_UTR 40.0%
!! GGAGTGTTTGGTGTATTATC+AGG + chr2_3:17042589-17042608 Msa0281570:five_prime_UTR 40.0%
TGCTTTATGGAGAGATTCCA+TGG + chr2_3:17042615-17042634 Msa0281570:five_prime_UTR 40.0%
TTTATGGAGAGATTCCATGG+TGG + chr2_3:17042618-17042637 Msa0281570:five_prime_UTR 40.0%
ACCAGTCATCAATTACCTCT+CGG - chr2_3:17042850-17042869 None:intergenic 40.0%
AACCGAGTTCAAAACTTGAC+AGG - chr2_3:17042884-17042903 None:intergenic 40.0%
AGAAGATACACAGCTGGTAT+TGG - chr2_3:17043224-17043243 None:intergenic 40.0%
TGAAGTAGAAGATACACAGC+TGG - chr2_3:17043230-17043249 None:intergenic 40.0%
! ATTTTTGTGGCAGTATGGGA+AGG + chr2_3:17043403-17043422 Msa0281570:intron 40.0%
TCACATCTTGAGGATCCATT+GGG - chr2_3:17043433-17043452 None:intergenic 40.0%
ATCACATCTTGAGGATCCAT+TGG - chr2_3:17043434-17043453 None:intergenic 40.0%
TGTTCTTGCATCACATCTTG+AGG - chr2_3:17043443-17043462 None:intergenic 40.0%
TGGTCAATCTGCTTGAATCA+AGG - chr2_3:17043490-17043509 None:intergenic 40.0%
TTGATTCAAGCAGATTGACC+AGG + chr2_3:17043489-17043508 Msa0281570:five_prime_UTR 40.0%
AACAACATCTTATGTGGACC+TGG - chr2_3:17043510-17043529 None:intergenic 40.0%
TGCTTGCATGATCAAAGAGA+TGG - chr2_3:17043631-17043650 None:intergenic 40.0%
GCAAGCAGAAATCATAGACT+CGG + chr2_3:17043644-17043663 Msa0281570:CDS 40.0%
! AACTTTCTTCGCGGTTTTTC+TGG - chr2_3:17043670-17043689 None:intergenic 40.0%
TCATCTTCGAACTTTCTTCG+CGG - chr2_3:17043679-17043698 None:intergenic 40.0%
AGTGATCTCAACTTCGAAAG+AGG + chr2_3:17043832-17043851 Msa0281570:CDS 40.0%
CTCAACTTCGAAAGAGGAAA+AGG + chr2_3:17043838-17043857 Msa0281570:CDS 40.0%
ATCATCAATGATGCTGCATG+AGG - chr2_3:17044136-17044155 None:intergenic 40.0%
AAATGTTCGTGCCAAATGCA+CGG + chr2_3:17044390-17044409 Msa0281570:CDS 40.0%
TAGCCGATGATCTGAACAAA+TGG - chr2_3:17044573-17044592 None:intergenic 40.0%
! GGTGATCAGGTTGTAATTGA+TGG - chr2_3:17044663-17044682 None:intergenic 40.0%
TGCATTCTGTTAACTACACG+AGG + chr2_3:17044817-17044836 Msa0281570:intron 40.0%
ACTAAATGATACGTTTGGCC+AGG + chr2_3:17044927-17044946 Msa0281570:intron 40.0%
CTAAATGATACGTTTGGCCA+GGG + chr2_3:17044928-17044947 Msa0281570:intron 40.0%
ACAATCACGATTTAAGTCCC+TGG - chr2_3:17044948-17044967 None:intergenic 40.0%
AAGCTGTGCAGATTCTTCTA+AGG + chr2_3:17045339-17045358 Msa0281570:CDS 40.0%
AGCTGTGCAGATTCTTCTAA+GGG + chr2_3:17045340-17045359 Msa0281570:CDS 40.0%
GCCAGCAAGATTTGATAGAA+TGG - chr2_3:17045408-17045427 None:intergenic 40.0%
GAGAATCATATACAGCTGCA+TGG + chr2_3:17045444-17045463 Msa0281570:CDS 40.0%
!!! CATGTTTTGATGATAGGGAG+AGG - chr2_3:17045492-17045511 None:intergenic 40.0%
GATACGAAACTTCAACTGGT+TGG + chr2_3:17045511-17045530 Msa0281570:CDS 40.0%
CTACAGGTAAGCTTCAAAGA+AGG + chr2_3:17045542-17045561 Msa0281570:CDS 40.0%
!! GATTTTTGAGCACTTGGGTG+TGG - chr2_3:17041920-17041939 None:intergenic 45.0%
TGATGAGAGAGATGCTGAGA+AGG - chr2_3:17041979-17041998 None:intergenic 45.0%
! GGGTGCTAGTTTCAATCAAC+AGG + chr2_3:17042045-17042064 Msa0281570:five_prime_UTR 45.0%
GGAAGCTTCAAGGTGATGAA+TGG + chr2_3:17042378-17042397 Msa0281570:five_prime_UTR 45.0%
! TGGTTTCTCCGAAGCTTGTT+TGG + chr2_3:17042432-17042451 Msa0281570:five_prime_UTR 45.0%
TTGTTAAGGAGAAGGCAAGG+AGG + chr2_3:17042561-17042580 Msa0281570:five_prime_UTR 45.0%
!! AAGGAGGTACAAGGAGTGTT+TGG + chr2_3:17042577-17042596 Msa0281570:five_prime_UTR 45.0%
TGTCTTAATCCTCCGGTTCT+AGG + chr2_3:17042796-17042815 Msa0281570:intron 45.0%
GTCTTAATCCTCCGGTTCTA+GGG + chr2_3:17042797-17042816 Msa0281570:intron 45.0%
! TCTTAATCCTCCGGTTCTAG+GGG + chr2_3:17042798-17042817 Msa0281570:intron 45.0%
GGTTGAACTCTCGATTACCA+GGG - chr2_3:17042829-17042848 None:intergenic 45.0%
TAATCGAGAGTTCAACCGAG+AGG + chr2_3:17042832-17042851 Msa0281570:intron 45.0%
! ACCGAGAGGTAATTGATGAC+TGG + chr2_3:17042846-17042865 Msa0281570:intron 45.0%
CGATTTAAATTGCCGTGTCG+AGG + chr2_3:17043568-17043587 Msa0281570:CDS 45.0%
TAAGTCCACTGAGAACACGA+GGG - chr2_3:17044225-17044244 None:intergenic 45.0%
ATAAGTCCACTGAGAACACG+AGG - chr2_3:17044226-17044245 None:intergenic 45.0%
AGGTGTAGAAATGGAGCAAG+AGG - chr2_3:17044358-17044377 None:intergenic 45.0%
GCAGCTAAAATCTGGTGATC+AGG - chr2_3:17044676-17044695 None:intergenic 45.0%
GCAATTGTGGCATGACACTA+AGG - chr2_3:17045044-17045063 None:intergenic 45.0%
CGTGTAGACAGCCTTAATCT+TGG + chr2_3:17045157-17045176 Msa0281570:intron 45.0%
ATCTTGCTGGCACATACTCT+TGG + chr2_3:17045417-17045436 Msa0281570:CDS 45.0%
!!! AAATGTAAATTTTTAAAAAA+CGG - chr2_3:17045190-17045209 None:intergenic 5.0%
CTGCAATAACTGCTCCACCA+TGG - chr2_3:17042635-17042654 None:intergenic 50.0%
CGGTTGAACTCTCGATTACC+AGG - chr2_3:17042830-17042849 None:intergenic 50.0%
GTATGGGAAGGTTCACCCAA+TGG + chr2_3:17043415-17043434 Msa0281570:intron 50.0%
AAGTCCACTGAGAACACGAG+GGG - chr2_3:17044224-17044243 None:intergenic 50.0%
! AAACTCAAGCGCCGTGCATT+TGG - chr2_3:17044404-17044423 None:intergenic 50.0%
!!! CACGGCGCTTGAGTTTTTTC+AGG + chr2_3:17044408-17044427 Msa0281570:CDS 50.0%
CGGCTATTAATCTGCTGCAG+AGG + chr2_3:17044587-17044606 Msa0281570:CDS 50.0%
ACGGTTCGAGGCCAAGATTA+AGG - chr2_3:17045171-17045190 None:intergenic 50.0%
! GCATGGCTTCTGAGAAAGAC+AGG + chr2_3:17045461-17045480 Msa0281570:CDS 50.0%
CTGGTTGGATCAGAGTCTAC+AGG + chr2_3:17045526-17045545 Msa0281570:CDS 50.0%
! GGAGAAGGCAAGGAGGTACA+AGG + chr2_3:17042568-17042587 Msa0281570:five_prime_UTR 55.0%
!! AATCCTCCGGTTCTAGGGGA+CGG + chr2_3:17042802-17042821 Msa0281570:intron 55.0%
AGTTCCCCTCGTGTTCTCAG+TGG + chr2_3:17044217-17044236 Msa0281570:CDS 55.0%
GCGGTCTGTGACAGCAATTG+TGG - chr2_3:17045057-17045076 None:intergenic 55.0%
GCTGGCACATACTCTTGGAC+AGG + chr2_3:17045422-17045441 Msa0281570:CDS 55.0%
CAGGGTCCGTCCCCTAGAAC+CGG - chr2_3:17042811-17042830 None:intergenic 65.0%
GGTCCGTCCCCTAGAACCGG+AGG - chr2_3:17042808-17042827 None:intergenic 70.0%
!! CGGTTCTAGGGGACGGACCC+TGG + chr2_3:17042809-17042828 Msa0281570:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17041873 17045726 17041873 ID=Msa0281570;Name=Msa0281570
chr2_3 mRNA 17041873 17045726 17041873 ID=Msa0281570-mRNA-1;Parent=Msa0281570;Name=Msa0281570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1020|1|1|1|0.75|0.6|5|140|436
chr2_3 exon 17041873 17042675 17041873 ID=Msa0281570-mRNA-1:exon:7008;Parent=Msa0281570-mRNA-1
chr2_3 exon 17043213 17043285 17043213 ID=Msa0281570-mRNA-1:exon:7009;Parent=Msa0281570-mRNA-1
chr2_3 exon 17043416 17044449 17043416 ID=Msa0281570-mRNA-1:exon:7010;Parent=Msa0281570-mRNA-1
chr2_3 exon 17044582 17044723 17044582 ID=Msa0281570-mRNA-1:exon:7011;Parent=Msa0281570-mRNA-1
chr2_3 exon 17045308 17045726 17045308 ID=Msa0281570-mRNA-1:exon:7012;Parent=Msa0281570-mRNA-1
chr2_3 five_prime_UTR 17041873 17042675 17041873 ID=Msa0281570-mRNA-1:five_prime_utr;Parent=Msa0281570-mRNA-1
chr2_3 five_prime_UTR 17043213 17043285 17043213 ID=Msa0281570-mRNA-1:five_prime_utr;Parent=Msa0281570-mRNA-1
chr2_3 five_prime_UTR 17043416 17043559 17043416 ID=Msa0281570-mRNA-1:five_prime_utr;Parent=Msa0281570-mRNA-1
chr2_3 CDS 17043560 17044449 17043560 ID=Msa0281570-mRNA-1:cds;Parent=Msa0281570-mRNA-1
chr2_3 CDS 17044582 17044723 17044582 ID=Msa0281570-mRNA-1:cds;Parent=Msa0281570-mRNA-1
chr2_3 CDS 17045308 17045586 17045308 ID=Msa0281570-mRNA-1:cds;Parent=Msa0281570-mRNA-1
chr2_3 three_prime_UTR 17045587 17045726 17045587 ID=Msa0281570-mRNA-1:three_prime_utr;Parent=Msa0281570-mRNA-1
Gene Sequence

>Msa0281570

ATGAGTATCGATTTAAATTGCCGTGTCGAGGATTTATTAATCGAAGAAGCATTGCAGCCACTAGAATTCCATCTCTTTGATCATGCAAGCAGAAATCATAGACTCGGCCAGAAAAACCGCGAAGAAAGTTCGAAGATGAAATTGCAAACATCATTAGAAAAATGTGGTGAAGAGTATATTGTAGACACTGCATCGATTTTCGAGAGTTTAATCAGTTCATCAGGAACTAATTATGGTTCATTAAAGGATGTGATTTTGGATGAACTTCTAATAGTGATCTCAACTTCGAAAGAGGAAAAGGAACTAAGAACATCAGTATCAATTCTAACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTGAAGAAAAAGGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGCAATTCTAATCTATTTAATAAATCCATCTCCTATAGATATAAATACACTGGAAATTTTGCCAATATTAGTAGAGATTGTATGCACTTCATCAAAAAGTTGTTACAAGAGTAATAAGCAAGAAGAATCACTTCTTATGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTTGTAACTTCATTTGACTATGCTAAAAATAACATGCATTTGGAAGTAATCAGTTCCCCTCGTGTTCTCAGTGGACTTATAGAAGTTGCAAGAAATCATAATCTTGAAGAGTTTTTGTCTTTGACTACCATTCTCATAAAATGCATGCAGTTTGATTCACAGTGTAGAAAGTATGTGTCACAGTTCACTCCTCTTGCTCCATTTCTACACCTTTTAGAGACAGAAAATGTTCGTGCCAAATGCACGGCGCTTGAGTTTTTTCAGGAAATCTTATGCATACCAAGATCATCGGCTATTAATCTGCTGCAGAGGATAAAAAAAGAAAGCAGAATCAATATTATGCAGATACTAATGCATTGTGTCCATCAATTACAACCTGATCACCAGATTTTAGCTGCTAACCTATTGATTCAGTTAGACACATTGAACCCAACTGATAAAAGCTTGTTCAGAGAAGAAGCTGTGCAGATTCTTCTAAGGGAATTGACATCTGAAGAAAGCTCAGAACATATATTATCTTCATCCATTCTATCAAATCTTGCTGGCACATACTCTTGGACAGGAGAATCATATACAGCTGCATGGCTTCTGAGAAAGACAGGCTTGACCTCTCCCTATCATCAAAACATGATACGAAACTTCAACTGGTTGGATCAGAGTCTACAGGTAAGCTTCAAAGAAGGATTATTATATGTCAACAAGTAA

Protein sequence

>Msa0281570

MSIDLNCRVEDLLIEEALQPLEFHLFDHASRNHRLGQKNREESSKMKLQTSLEKCGEEYIVDTASIFESLISSSGTNYGSLKDVILDELLIVISTSKEEKELRTSVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDINTLEILPILVEIVCTSSKSCYKSNKQEESLLMTPHAASLMIIEELVTSFDYAKNNMHLEVISSPRVLSGLIEVARNHNLEEFLSLTTILIKCMQFDSQCRKYVSQFTPLAPFLHLLETENVRAKCTALEFFQEILCIPRSSAINLLQRIKKESRINIMQILMHCVHQLQPDHQILAANLLIQLDTLNPTDKSLFREEAVQILLRELTSEESSEHILSSSILSNLAGTYSWTGESYTAAWLLRKTGLTSPYHQNMIRNFNWLDQSLQVSFKEGLLYVNK*