Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700860 | XP_003629722.2 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700860 | sp|Q9Y3A4|RRP7A_HUMAN | 31.788 | 151 | 87 | 4 | 186 | 330 | 140 | 280 | 1.31e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700860 | G7LIM3 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045490 | Msa0700860 | 0.822005 | 2.985691e-53 | -8.615850e-47 |
| Msa0047160 | Msa0700860 | 0.824730 | 6.890966e-54 | -8.615850e-47 |
| Msa0094470 | Msa0700860 | 0.813396 | 2.614868e-51 | -8.615850e-47 |
| Msa0603320 | Msa0700860 | 0.805943 | 1.045642e-49 | -8.615850e-47 |
| Msa0615440 | Msa0700860 | 0.805982 | 1.026388e-49 | -8.615850e-47 |
| Msa0641140 | Msa0700860 | 0.814113 | 1.818028e-51 | -8.615850e-47 |
| Msa0656580 | Msa0700860 | 0.820850 | 5.515619e-53 | -8.615850e-47 |
| Msa0698490 | Msa0700860 | 0.803803 | 2.928243e-49 | -8.615850e-47 |
| Msa0698660 | Msa0700860 | 0.805099 | 1.572335e-49 | -8.615850e-47 |
| Msa0700860 | Msa0700920 | 0.993028 | 5.573477e-197 | -8.615850e-47 |
| Msa0700860 | Msa0796440 | 0.804783 | 1.830238e-49 | -8.615850e-47 |
| Msa0700860 | Msa0802410 | 0.803458 | 3.452503e-49 | -8.615850e-47 |
| Msa0700860 | Msa0830390 | 0.824759 | 6.782917e-54 | -8.615850e-47 |
| Msa0700860 | Msa0850710 | 0.807024 | 6.185008e-50 | -8.615850e-47 |
| Msa0700860 | Msa0859180 | 0.836894 | 7.159537e-57 | -8.615850e-47 |
| Msa0700860 | Msa0902760 | 0.806814 | 6.852285e-50 | -8.615850e-47 |
| Msa0700860 | Msa0944660 | 0.802105 | 6.569347e-49 | -8.615850e-47 |
| Msa0700860 | Msa1006840 | 0.819009 | 1.454097e-52 | -8.615850e-47 |
| Msa0700860 | Msa1025260 | 0.803195 | 3.915047e-49 | -8.615850e-47 |
| Msa0700860 | Msa1093330 | 0.806465 | 8.117706e-50 | -8.615850e-47 |
| Msa0700860 | Msa1093530 | 0.802948 | 4.402784e-49 | -8.615850e-47 |
| Msa0700860 | Msa1109350 | 0.800615 | 1.326037e-48 | -8.615850e-47 |
| Msa0700860 | Msa1133400 | 0.815472 | 9.086626e-52 | -8.615850e-47 |
| Msa0700860 | Msa1207270 | 0.807621 | 4.622290e-50 | -8.615850e-47 |
| Msa0700860 | Msa1218600 | 0.812438 | 4.239951e-51 | -8.615850e-47 |
| Msa0700860 | Msa1265630 | 0.824452 | 8.010647e-54 | -8.615850e-47 |
| Msa0700860 | Msa1355700 | 0.824179 | 9.286125e-54 | -8.615850e-47 |
| Msa0700860 | Msa1376200 | 0.827007 | 1.984154e-54 | -8.615850e-47 |
| Msa0700860 | Msa1381480 | 0.801006 | 1.103672e-48 | -8.615850e-47 |
| Msa0700860 | Msa1393430 | 0.804119 | 2.517018e-49 | -8.615850e-47 |
| Msa0700860 | Msa1394290 | 0.814130 | 1.801606e-51 | -8.615850e-47 |
| Msa0700860 | Msa1432700 | 0.801703 | 7.946460e-49 | -8.615850e-47 |
| Msa0700860 | Msa1457920 | 0.803436 | 3.489314e-49 | -8.615850e-47 |
| Msa0127310 | Msa0700860 | 0.800449 | 1.434079e-48 | -8.615850e-47 |
| Msa0127850 | Msa0700860 | 0.800099 | 1.689332e-48 | -8.615850e-47 |
| Msa0146770 | Msa0700860 | 0.814585 | 1.429118e-51 | -8.615850e-47 |
| Msa0177210 | Msa0700860 | 0.810044 | 1.401829e-50 | -8.615850e-47 |
| Msa0189300 | Msa0700860 | 0.808958 | 2.398438e-50 | -8.615850e-47 |
| Msa0227400 | Msa0700860 | 0.802531 | 5.367075e-49 | -8.615850e-47 |
| Msa0231660 | Msa0700860 | 0.806201 | 9.227809e-50 | -8.615850e-47 |
| Msa0467780 | Msa0700860 | 0.803434 | 3.492798e-49 | -8.615850e-47 |
| Msa0484840 | Msa0700860 | 0.815976 | 7.014035e-52 | -8.615850e-47 |
| Msa0514180 | Msa0700860 | 0.803604 | 3.220443e-49 | -8.615850e-47 |
| Msa0524590 | Msa0700860 | 0.801104 | 1.053791e-48 | -8.615850e-47 |
| Msa0554290 | Msa0700860 | 0.808639 | 2.805960e-50 | -8.615850e-47 |
| Msa0556790 | Msa0700860 | 0.804722 | 1.884798e-49 | -8.615850e-47 |
| Msa0558810 | Msa0700860 | 0.855731 | 5.180014e-62 | -8.615850e-47 |
| Msa0558840 | Msa0700860 | 0.822155 | 2.756151e-53 | -8.615850e-47 |
| Msa0600600 | Msa0700860 | 0.821013 | 5.059230e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700860 | MtrunA17_Chr8g0378681 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Msa0700860 | MtrunA17_Chr4g0025631 | 74.670 | 379 | 45 | 4 | 1 | 330 | 1 | 377 | 0.0 | 529 |
| Msa0700860 | MtrunA17_Chr1g0197131 | 81.955 | 133 | 24 | 0 | 198 | 330 | 1 | 133 | 8.71e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700860 | AT5G38720.3 | 65.101 | 149 | 51 | 1 | 183 | 330 | 165 | 313 | 8.62e-69 | 218 |
| Msa0700860 | AT5G38720.1 | 65.101 | 149 | 51 | 1 | 183 | 330 | 158 | 306 | 9.89e-69 | 217 |
| Msa0700860 | AT5G38720.2 | 65.101 | 149 | 51 | 1 | 183 | 330 | 177 | 325 | 5.09e-68 | 216 |
Find 67 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTATAATCTCCATTTC+AGG | 0.169996 | 4_4:+72027975 | None:intergenic |
| ATCAGAATCTCTACGCTTCT+TGG | 0.250763 | 4_4:+72027705 | None:intergenic |
| AAATCAACTTCTTCATCTTC+TGG | 0.256960 | 4_4:+72027882 | None:intergenic |
| AAAGTTAGTAAAGGAGAAAA+AGG | 0.308720 | 4_4:-72028420 | Msa0700860:CDS |
| AGCTGCTGCAGAAAATAAAT+TGG | 0.319112 | 4_4:-72025075 | Msa0700860:CDS |
| GCAATCAACATCATTTAATA+AGG | 0.321323 | 4_4:+72024319 | None:intergenic |
| GTTGATTTAGAAGAGCAAAA+TGG | 0.351385 | 4_4:-72027867 | Msa0700860:intron |
| TCCTGAAATGGAGATTATAA+AGG | 0.363253 | 4_4:-72027976 | Msa0700860:CDS |
| GACATTCATATTATTTCCTC+TGG | 0.367904 | 4_4:-72027477 | Msa0700860:CDS |
| GCGTTCCTTATGCCCATCAT+TGG | 0.384093 | 4_4:-72024123 | Msa0700860:three_prime_UTR |
| CCAACCCTGGTCTACTTTGA+TGG | 0.384521 | 4_4:+72026984 | None:intergenic |
| AAGCCACCACTAATCGAAAA+AGG | 0.413000 | 4_4:-72027941 | Msa0700860:CDS |
| AAGAAAAGAACCTGCGACCT+TGG | 0.413836 | 4_4:+72024294 | None:intergenic |
| TCCACCTGCGTTTAGCGGCC+AGG | 0.422775 | 4_4:+72028706 | None:intergenic |
| GGAGATGATGACTGCTCAAA+TGG | 0.443319 | 4_4:-72027456 | Msa0700860:CDS |
| AAAAGAGAAGCTCAGAGAAA+TGG | 0.446445 | 4_4:-72025005 | Msa0700860:intron |
| AAAGAGAGAACAAAATCATC+AGG | 0.460936 | 4_4:-72027502 | Msa0700860:CDS |
| TCCTTTACTAACTTTCATCA+TGG | 0.465522 | 4_4:+72028428 | None:intergenic |
| CCTGAAATGGAGATTATAAA+GGG | 0.465886 | 4_4:-72027975 | Msa0700860:CDS |
| TGTTTCAGTGGATCCTGAAA+TGG | 0.466212 | 4_4:-72027988 | Msa0700860:intron |
| TCCATCCTCCTTCTGCAGCA+AGG | 0.468377 | 4_4:+72025174 | None:intergenic |
| AGGTTAACGCAATCCAATGA+TGG | 0.468471 | 4_4:+72024110 | None:intergenic |
| CATGTCAAGATGAACAATAA+TGG | 0.472762 | 4_4:-72028333 | Msa0700860:intron |
| AAGTGGGATTGCTGTGGGCT+CGG | 0.474663 | 4_4:-72025105 | Msa0700860:CDS |
| GAGTTTCCACCTGCGTTTAG+CGG | 0.483197 | 4_4:+72028701 | None:intergenic |
| GTAAATGAACAAAATTTGTC+AGG | 0.484474 | 4_4:+72024221 | None:intergenic |
| GCAATCCAATGATGGGCATA+AGG | 0.492331 | 4_4:+72024118 | None:intergenic |
| CCATCCTCCTTCTGCAGCAA+GGG | 0.496362 | 4_4:+72025175 | None:intergenic |
| TTGATTGCAGCCAAGGTCGC+AGG | 0.505768 | 4_4:-72024304 | Msa0700860:three_prime_UTR |
| CGCTGAAAGTGGGATTGCTG+TGG | 0.507910 | 4_4:-72025111 | Msa0700860:CDS |
| CTCAGATACCTTGAGAAATG+AGG | 0.517485 | 4_4:+72028656 | None:intergenic |
| GCCATGATGAAAGTTAGTAA+AGG | 0.525855 | 4_4:-72028429 | Msa0700860:CDS |
| AAAACTACTGACGCTGAAAG+TGG | 0.530432 | 4_4:-72025122 | Msa0700860:CDS |
| AATGATGTTGATTGCAGCCA+AGG | 0.532209 | 4_4:-72024311 | Msa0700860:three_prime_UTR |
| CCATCAAAGTAGACCAGGGT+TGG | 0.532437 | 4_4:-72026984 | Msa0700860:CDS |
| TGTTGCAAAACCTCCAACCC+TGG | 0.543861 | 4_4:+72026971 | None:intergenic |
| TTTCGCTCCCTCATTTCTCA+AGG | 0.544907 | 4_4:-72028664 | Msa0700860:intron |
| CCCTTGCTGCAGAAGGAGGA+TGG | 0.545811 | 4_4:-72025175 | Msa0700860:CDS |
| GGAACTGCAGAGCAAATTTG+AGG | 0.547063 | 4_4:-72024389 | Msa0700860:CDS |
| TCAAACCACAGAGTGGATCA+TGG | 0.547910 | 4_4:-72027011 | Msa0700860:intron |
| TCAAAGTAGACCAGGGTTGG+AGG | 0.548210 | 4_4:-72026981 | Msa0700860:CDS |
| AAAGAAGCCCTTGCTGCAGA+AGG | 0.553866 | 4_4:-72025182 | Msa0700860:CDS |
| GTTGATTTAGAAGTGCAAAA+CGG | 0.556656 | 4_4:-72028136 | Msa0700860:intron |
| TGCTGCAGAAGGAGGATGGA+CGG | 0.572937 | 4_4:-72025171 | Msa0700860:CDS |
| GAAGCCCTTGCTGCAGAAGG+AGG | 0.575071 | 4_4:-72025179 | Msa0700860:CDS |
| TGCGTTAACCTATGTTATTG+TGG | 0.579699 | 4_4:-72024098 | Msa0700860:three_prime_UTR |
| AAACTACTGACGCTGAAAGT+GGG | 0.579773 | 4_4:-72025121 | Msa0700860:CDS |
| GGTTAACGCAATCCAATGAT+GGG | 0.580909 | 4_4:+72024111 | None:intergenic |
| GCTGAAAGTGGGATTGCTGT+GGG | 0.581833 | 4_4:-72025110 | Msa0700860:CDS |
| GAATACCATCAAAGTAGACC+AGG | 0.581962 | 4_4:-72026989 | Msa0700860:CDS |
| TGATACATCCACAATAACAT+AGG | 0.582790 | 4_4:+72024090 | None:intergenic |
| TTGTGATTCTAAAGAAGAGA+AGG | 0.583202 | 4_4:-72027737 | Msa0700860:CDS |
| TCAGATACCTTGAGAAATGA+GGG | 0.584663 | 4_4:+72028657 | None:intergenic |
| ACCTGGCCGCTAAACGCAGG+TGG | 0.586936 | 4_4:-72028707 | Msa0700860:five_prime_UTR |
| CCATATATCAGATGGAGTAG+TGG | 0.593466 | 4_4:-72027764 | Msa0700860:intron |
| TCTAAAGAAGAGAAGGTCAA+AGG | 0.593515 | 4_4:-72027730 | Msa0700860:CDS |
| AGAACCTGGCCGCTAAACGC+AGG | 0.596545 | 4_4:-72028710 | Msa0700860:five_prime_UTR |
| GACGGTGGTTCAGCACCACA+AGG | 0.611340 | 4_4:-72025153 | Msa0700860:CDS |
| TGGTTCAGCACCACAAGGGT+AGG | 0.619462 | 4_4:-72025148 | Msa0700860:CDS |
| TAGAGATTCTGATATTGAAG+CGG | 0.633558 | 4_4:-72027695 | Msa0700860:CDS |
| TGCAACAGTTGAGAGCTGCT+AGG | 0.650823 | 4_4:-72024351 | Msa0700860:CDS |
| TGAGCAGTCATCATCTCCAG+AGG | 0.681253 | 4_4:+72027461 | None:intergenic |
| ACTGCAGAGCAAATTTGAGG+AGG | 0.684181 | 4_4:-72024386 | Msa0700860:CDS |
| AGAGTTTATATCTACTTACG+AGG | 0.689415 | 4_4:-72026939 | Msa0700860:CDS |
| TGCAGAAGGAGGATGGACGG+TGG | 0.709610 | 4_4:-72025168 | Msa0700860:CDS |
| AATACCATCAAAGTAGACCA+GGG | 0.721380 | 4_4:-72026988 | Msa0700860:CDS |
| ACGGTGGTTCAGCACCACAA+GGG | 0.735362 | 4_4:-72025152 | Msa0700860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTATTGTTATACA+TGG | - | chr4_4:72025629-72025648 | Msa0700860:intron | 10.0% |
| !! | TCAATTTATAATAAAATTCA+TGG | + | chr4_4:72025966-72025985 | None:intergenic | 10.0% |
| !!! | TTTTAGTTTAAGAAATATTA+GGG | - | chr4_4:72027971-72027990 | Msa0700860:CDS | 10.0% |
| !!! | AATGATTTTTTTTGTAATGT+CGG | - | chr4_4:72025372-72025391 | Msa0700860:intron | 15.0% |
| !! | TTAAATATACAATAGCATAT+GGG | + | chr4_4:72025613-72025632 | None:intergenic | 15.0% |
| !! | ATTAAATATACAATAGCATA+TGG | + | chr4_4:72025614-72025633 | None:intergenic | 15.0% |
| !!! | TAAAGGAAATTAATTTTGAA+AGG | + | chr4_4:72027177-72027196 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTAAGAAATATT+AGG | - | chr4_4:72027970-72027989 | Msa0700860:CDS | 15.0% |
| !!! | ACAAATATTTTTGACAAAAT+TGG | + | chr4_4:72028534-72028553 | None:intergenic | 15.0% |
| !!! | GATTTTTTCATTATATTCTT+TGG | - | chr4_4:72028705-72028724 | Msa0700860:five_prime_UTR | 15.0% |
| !! | TTAAGCAAATATACATGTTA+TGG | + | chr4_4:72024110-72024129 | None:intergenic | 20.0% |
| !! | ATAGTTTACCCTAAATTATA+AGG | - | chr4_4:72024133-72024152 | Msa0700860:three_prime_UTR | 20.0% |
| !!! | TAGTTAAATTGCAAATTTTG+AGG | - | chr4_4:72024178-72024197 | Msa0700860:three_prime_UTR | 20.0% |
| !!! | AGTTAAATTGCAAATTTTGA+GGG | - | chr4_4:72024179-72024198 | Msa0700860:three_prime_UTR | 20.0% |
| !!! | AAATGTGTTATGTTTTTGTA+CGG | - | chr4_4:72024677-72024696 | Msa0700860:intron | 20.0% |
| !! | TTTGCTTAAGTAGAAATATT+TGG | + | chr4_4:72025892-72025911 | None:intergenic | 20.0% |
| !!! | TTGTATAATTACTAGTTCTA+TGG | - | chr4_4:72026027-72026046 | Msa0700860:intron | 20.0% |
| !!! | CTTTTACATGTTATTTTTCA+AGG | + | chr4_4:72026053-72026072 | None:intergenic | 20.0% |
| !!! | AAAAGTTATTTTCCTTCATA+AGG | - | chr4_4:72026068-72026087 | Msa0700860:intron | 20.0% |
| !!! | AAAGTTATTTTCCTTCATAA+GGG | - | chr4_4:72026069-72026088 | Msa0700860:intron | 20.0% |
| !! | CTTATACAACTATAATAACT+TGG | + | chr4_4:72026121-72026140 | None:intergenic | 20.0% |
| !! | CAAGTTATTATAGTTGTATA+AGG | - | chr4_4:72026119-72026138 | Msa0700860:intron | 20.0% |
| !! | ATAATTCAGTTTGTATTTGT+AGG | - | chr4_4:72026260-72026279 | Msa0700860:intron | 20.0% |
| !! | TAATTCAGTTTGTATTTGTA+GGG | - | chr4_4:72026261-72026280 | Msa0700860:intron | 20.0% |
| !!! | TTTTTGATGTTGATGTTTTT+TGG | - | chr4_4:72026404-72026423 | Msa0700860:intron | 20.0% |
| !!! | GTATTTTATGAGTAAGAATA+GGG | - | chr4_4:72026525-72026544 | Msa0700860:intron | 20.0% |
| !! | TCATAACTGAATATTGAATA+AGG | + | chr4_4:72027452-72027471 | None:intergenic | 20.0% |
| !!! | TAAATTTAAACGAACAGTTT+TGG | - | chr4_4:72027851-72027870 | Msa0700860:intron | 20.0% |
| !!! | AACAGTTTTGGTTTAAATAA+TGG | - | chr4_4:72027863-72027882 | Msa0700860:intron | 20.0% |
| !!! | AATAATGGAAGATGTTAATT+AGG | - | chr4_4:72027878-72027897 | Msa0700860:CDS | 20.0% |
| !!! | ATAATGGAAGATGTTAATTA+GGG | - | chr4_4:72027879-72027898 | Msa0700860:CDS | 20.0% |
| !!! | AAATTATATGATTTTATGCG+AGG | - | chr4_4:72028177-72028196 | Msa0700860:CDS | 20.0% |
| !!! | TATTTTTGACAAAATTGGAA+TGG | + | chr4_4:72028529-72028548 | None:intergenic | 20.0% |
| !!! | AATTTGAGTTATATTTTGCT+GGG | - | chr4_4:72028576-72028595 | Msa0700860:intron | 20.0% |
| ! | TACCTACACCTTATAATTTA+GGG | + | chr4_4:72024144-72024163 | None:intergenic | 25.0% |
| !!! | AAATTTTGAGGGATCAAATT+GGG | - | chr4_4:72024190-72024209 | Msa0700860:three_prime_UTR | 25.0% |
| !!! | ATATGTATGTTTTGATTCAC+AGG | - | chr4_4:72024263-72024282 | Msa0700860:three_prime_UTR | 25.0% |
| ! | AAAGTTAGTAAAGGAGAAAA+AGG | - | chr4_4:72024305-72024324 | Msa0700860:three_prime_UTR | 25.0% |
| !!! | GAACTTTCTCTGAAATAAAT+TGG | - | chr4_4:72024456-72024475 | Msa0700860:intron | 25.0% |
| !! | AAATAAATTGGTTGTTTCAG+TGG | - | chr4_4:72024468-72024487 | Msa0700860:intron | 25.0% |
| ! | TATCTTGTACACAGTATATA+CGG | + | chr4_4:72024636-72024655 | None:intergenic | 25.0% |
| !!! | AATGTGTTATGTTTTTGTAC+GGG | - | chr4_4:72024678-72024697 | Msa0700860:intron | 25.0% |
| ! | GAACTTCAACTGAAATAAAT+TGG | - | chr4_4:72024713-72024732 | Msa0700860:intron | 25.0% |
| !! | AAATAAATTGGTTGTTTCAG+TGG | - | chr4_4:72024468-72024487 | Msa0700860:intron | 25.0% |
| !!! | AACAAGGACAAAATTTTAGT+TGG | - | chr4_4:72024810-72024829 | Msa0700860:intron | 25.0% |
| !!! | AGAAAGTGCTTTTTATTACA+AGG | + | chr4_4:72025064-72025083 | None:intergenic | 25.0% |
| ! | AAACAAAGATAACTTCTATG+AGG | + | chr4_4:72025143-72025162 | None:intergenic | 25.0% |
| !!! | AGAAGTTATCTTTGTTTTGT+AGG | - | chr4_4:72025146-72025165 | Msa0700860:CDS | 25.0% |
| ! | AGCTAAGAAAAAAAGAAGAA+AGG | - | chr4_4:72025181-72025200 | Msa0700860:CDS | 25.0% |
| ! | TAAGAAAAAAAGAAGAAAGG+AGG | - | chr4_4:72025184-72025203 | Msa0700860:CDS | 25.0% |
| !!! | TGCATTATTTAGTTTTTGAC+TGG | - | chr4_4:72025684-72025703 | Msa0700860:intron | 25.0% |
| !!! | GCATTATTTAGTTTTTGACT+GGG | - | chr4_4:72025685-72025704 | Msa0700860:intron | 25.0% |
| !!! | CATTATTTAGTTTTTGACTG+GGG | - | chr4_4:72025686-72025705 | Msa0700860:intron | 25.0% |
| !! | AAAGTTTTTCTGTTGCTAAT+GGG | - | chr4_4:72026196-72026215 | Msa0700860:intron | 25.0% |
| ! | GAGAGTAATTGATAGAAATA+TGG | - | chr4_4:72026503-72026522 | Msa0700860:intron | 25.0% |
| !! | GGTATTTTATGAGTAAGAAT+AGG | - | chr4_4:72026524-72026543 | Msa0700860:intron | 25.0% |
| ! | AGAATAATGCAAAATCATGA+AGG | - | chr4_4:72026569-72026588 | Msa0700860:intron | 25.0% |
| !! | AAATACAAGGAGAACATTTT+GGG | + | chr4_4:72026708-72026727 | None:intergenic | 25.0% |
| !! | TAATGTTTTCAGCAAATACA+AGG | + | chr4_4:72026721-72026740 | None:intergenic | 25.0% |
| !! | ATATTTGTGTGTTTTTCTCT+TGG | - | chr4_4:72026903-72026922 | Msa0700860:intron | 25.0% |
| ! | CAAAATTAATTTCCTTTAGC+AGG | - | chr4_4:72027179-72027198 | Msa0700860:intron | 25.0% |
| ! | TGGATACTGAATATTGAATA+TGG | + | chr4_4:72027314-72027333 | None:intergenic | 25.0% |
| ! | TTGAGATGAGAGATTATAAA+GGG | + | chr4_4:72027374-72027393 | None:intergenic | 25.0% |
| !! | TTTGAGATGAGAGATTATAA+AGG | + | chr4_4:72027375-72027394 | None:intergenic | 25.0% |
| !! | ATTAATAAGCCGTTTAGTTT+GGG | + | chr4_4:72027399-72027418 | None:intergenic | 25.0% |
| !!! | GTTTCCATGCAATTATTTTT+CGG | - | chr4_4:72027499-72027518 | Msa0700860:CDS | 25.0% |
| ! | TCATCTACGATATGAATATA+TGG | + | chr4_4:72027772-72027791 | None:intergenic | 25.0% |
| ! | TAATGGAAGATGTTAATTAG+GGG | - | chr4_4:72027880-72027899 | Msa0700860:CDS | 25.0% |
| ! | TCATAGAAACCAAGATATTA+GGG | + | chr4_4:72028050-72028069 | None:intergenic | 25.0% |
| ! | ATCATAGAAACCAAGATATT+AGG | + | chr4_4:72028051-72028070 | None:intergenic | 25.0% |
| !! | TTTTGTGAATCTTAACTTAC+TGG | + | chr4_4:72028088-72028107 | None:intergenic | 25.0% |
| ! | GCAATCAACATCATTTAATA+AGG | + | chr4_4:72028409-72028428 | None:intergenic | 25.0% |
| ! | GTAAATGAACAAAATTTGTC+AGG | + | chr4_4:72028507-72028526 | None:intergenic | 25.0% |
| !!! | CAATTTGAGTTATATTTTGC+TGG | - | chr4_4:72028575-72028594 | Msa0700860:intron | 25.0% |
| !! | CATTATCATATCTTTTTCCT+CGG | - | chr4_4:72028656-72028675 | Msa0700860:intron | 25.0% |
| TACCCTAAATTATAAGGTGT+AGG | - | chr4_4:72024139-72024158 | Msa0700860:three_prime_UTR | 30.0% | |
| GTACCTACACCTTATAATTT+AGG | + | chr4_4:72024145-72024164 | None:intergenic | 30.0% | |
| !! | CAAATTTTGAGGGATCAAAT+TGG | - | chr4_4:72024189-72024208 | Msa0700860:three_prime_UTR | 30.0% |
| TCCTTTACTAACTTTCATCA+TGG | + | chr4_4:72024300-72024319 | None:intergenic | 30.0% | |
| ! | AATCTTTTTCTTCTTTTCCC+CGG | + | chr4_4:72024339-72024358 | None:intergenic | 30.0% |
| CATGTCAAGATGAACAATAA+TGG | - | chr4_4:72024392-72024411 | Msa0700860:CDS | 30.0% | |
| ! | TCATAGAATGCAGCTTTTAA+AGG | - | chr4_4:72024492-72024511 | Msa0700860:intron | 30.0% |
| ! | CATAGAATGCAGCTTTTAAA+GGG | - | chr4_4:72024493-72024512 | Msa0700860:intron | 30.0% |
| !!! | TTCTTTCTTTTTCGGCTAAT+AGG | + | chr4_4:72024535-72024554 | None:intergenic | 30.0% |
| ! | TGTCCTTGTTCTTTCTTTTT+CGG | + | chr4_4:72024543-72024562 | None:intergenic | 30.0% |
| ! | GTTGATTTAGAAGTGCAAAA+CGG | - | chr4_4:72024589-72024608 | Msa0700860:intron | 30.0% |
| TCCTGAAATGGAGATTATAA+AGG | - | chr4_4:72024749-72024768 | Msa0700860:intron | 30.0% | |
| CCTGAAATGGAGATTATAAA+GGG | - | chr4_4:72024750-72024769 | Msa0700860:intron | 30.0% | |
| GGAGATTATAAAGGGAAAAA+AGG | - | chr4_4:72024758-72024777 | Msa0700860:intron | 30.0% | |
| TAATCGAAAAAGGAAGAACA+AGG | - | chr4_4:72024794-72024813 | Msa0700860:intron | 30.0% | |
| AAATCAACTTCTTCATCTTC+TGG | + | chr4_4:72024846-72024865 | None:intergenic | 30.0% | |
| ! | GTTGATTTAGAAGAGCAAAA+TGG | - | chr4_4:72024858-72024877 | Msa0700860:intron | 30.0% |
| !! | AAATGGTAAGTTGATGGTTA+CGG | - | chr4_4:72024875-72024894 | Msa0700860:intron | 30.0% |
| TCTGATATATGGAGGAAAAA+AGG | + | chr4_4:72024953-72024972 | None:intergenic | 30.0% | |
| ! | TTTTTCCTCCATATATCAGA+TGG | - | chr4_4:72024953-72024972 | Msa0700860:intron | 30.0% |
| ! | TTGTGATTCTAAAGAAGAGA+AGG | - | chr4_4:72024988-72025007 | Msa0700860:intron | 30.0% |
| TAGAGATTCTGATATTGAAG+CGG | - | chr4_4:72025030-72025049 | Msa0700860:CDS | 30.0% | |
| GAAAATGAATGTATGGCTTT+AGG | + | chr4_4:72025121-72025140 | None:intergenic | 30.0% | |
| CTATGAGGAAAATGAATGTA+TGG | + | chr4_4:72025128-72025147 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTCTGATGATTT+TGG | + | chr4_4:72025212-72025231 | None:intergenic | 30.0% |
| AAAGAGAGAACAAAATCATC+AGG | - | chr4_4:72025223-72025242 | Msa0700860:intron | 30.0% | |
| GACATTCATATTATTTCCTC+TGG | - | chr4_4:72025248-72025267 | Msa0700860:intron | 30.0% | |
| AATTACTGTATGTATATGCG+TGG | + | chr4_4:72025441-72025460 | None:intergenic | 30.0% | |
| AGAGTTTATATCTACTTACG+AGG | - | chr4_4:72025786-72025805 | Msa0700860:intron | 30.0% | |
| ATCTACTTACGAGGAAAAAT+TGG | - | chr4_4:72025795-72025814 | Msa0700860:intron | 30.0% | |
| TCTTCCTTAAAGCAAAATAG+AGG | - | chr4_4:72025840-72025859 | Msa0700860:intron | 30.0% | |
| ! | TTATTTTCCTTCATAAGGGA+GGG | - | chr4_4:72026073-72026092 | Msa0700860:intron | 30.0% |
| TATAAGGTTTAACGATGCTT+TGG | - | chr4_4:72026135-72026154 | Msa0700860:intron | 30.0% | |
| ! | CAAAGTTTTTCTGTTGCTAA+TGG | - | chr4_4:72026195-72026214 | Msa0700860:intron | 30.0% |
| ! | AAGTTTTTCTGTTGCTAATG+GGG | - | chr4_4:72026197-72026216 | Msa0700860:intron | 30.0% |
| AACTTCTAATACTGTGTCTA+TGG | + | chr4_4:72026325-72026344 | None:intergenic | 30.0% | |
| TATTCAAATTATACGCATGC+AGG | + | chr4_4:72026366-72026385 | None:intergenic | 30.0% | |
| !!! | ATGTTGATGTTTTTTGGCTT+AGG | - | chr4_4:72026410-72026429 | Msa0700860:intron | 30.0% |
| GCATAAAAAGTGACTTTATC+TGG | - | chr4_4:72026435-72026454 | Msa0700860:intron | 30.0% | |
| ATCAATTACTCTCTTTCTTG+AGG | + | chr4_4:72026496-72026515 | None:intergenic | 30.0% | |
| TCAGGATTTCTGAATTAGTT+AGG | + | chr4_4:72026652-72026671 | None:intergenic | 30.0% | |
| ! | AATACAAGGAGAACATTTTG+GGG | + | chr4_4:72026707-72026726 | None:intergenic | 30.0% |
| ! | CAAATACAAGGAGAACATTT+TGG | + | chr4_4:72026709-72026728 | None:intergenic | 30.0% |
| !!! | AGCTAGCTAAATAGTTTTAG+AGG | - | chr4_4:72026840-72026859 | Msa0700860:intron | 30.0% |
| !!! | TAGCTAAATAGTTTTAGAGG+TGG | - | chr4_4:72026843-72026862 | Msa0700860:intron | 30.0% |
| !! | AGAAAGGTGTTAGAACTTTA+GGG | + | chr4_4:72027134-72027153 | None:intergenic | 30.0% |
| AGTTAGTAAGTCTGTTAGTT+TGG | + | chr4_4:72027262-72027281 | None:intergenic | 30.0% | |
| !! | ATTATAAAGGGCATTGTTGT+GGG | + | chr4_4:72027362-72027381 | None:intergenic | 30.0% |
| !! | TTAATAAGCCGTTTAGTTTG+GGG | + | chr4_4:72027398-72027417 | None:intergenic | 30.0% |
| GATTAATAAGCCGTTTAGTT+TGG | + | chr4_4:72027400-72027419 | None:intergenic | 30.0% | |
| AACACTTAAGTATCACAAAG+TGG | + | chr4_4:72027422-72027441 | None:intergenic | 30.0% | |
| CCAAAATAAGTAACAGATGT+GGG | + | chr4_4:72027480-72027499 | None:intergenic | 30.0% | |
| ACCAAAATAAGTAACAGATG+TGG | + | chr4_4:72027481-72027500 | None:intergenic | 30.0% | |
| TTGACCGAAAAATAATTGCA+TGG | + | chr4_4:72027506-72027525 | None:intergenic | 30.0% | |
| !! | AATTATTTTTCGGTCAATGC+AGG | - | chr4_4:72027509-72027528 | Msa0700860:CDS | 30.0% |
| !! | AACTCCTGTTTGTTTCTTTT+TGG | + | chr4_4:72027676-72027695 | None:intergenic | 30.0% |
| AAAAAGAAACAAACAGGAGT+TGG | - | chr4_4:72027675-72027694 | Msa0700860:intron | 30.0% | |
| AATGGAAGATGTTAATTAGG+GGG | - | chr4_4:72027881-72027900 | Msa0700860:CDS | 30.0% | |
| ! | CATGCTAATGCAAATTTTGA+TGG | + | chr4_4:72027917-72027936 | None:intergenic | 30.0% |
| ATGATCGTTATCTTGTTGAT+TGG | - | chr4_4:72028144-72028163 | Msa0700860:CDS | 30.0% | |
| TGATACATCCACAATAACAT+AGG | + | chr4_4:72028638-72028657 | None:intergenic | 30.0% | |
| TCAGATACCTTGAGAAATGA+GGG | + | chr4_4:72024071-72024090 | None:intergenic | 35.0% | |
| TATAAGGTGTAGGTACTACT+AGG | - | chr4_4:72024149-72024168 | Msa0700860:three_prime_UTR | 35.0% | |
| GCCATGATGAAAGTTAGTAA+AGG | - | chr4_4:72024296-72024315 | Msa0700860:three_prime_UTR | 35.0% | |
| ! | GTAAAGGAGAAAAAGGCATA+CGG | - | chr4_4:72024312-72024331 | Msa0700860:three_prime_UTR | 35.0% |
| TAGCCGAAAAAGAAAGAACA+AGG | - | chr4_4:72024537-72024556 | Msa0700860:intron | 35.0% | |
| CCCTTTATAATCTCCATTTC+AGG | + | chr4_4:72024753-72024772 | None:intergenic | 35.0% | |
| !!! | GTTCTTCCTTTTTCGATTAG+TGG | + | chr4_4:72024793-72024812 | None:intergenic | 35.0% |
| ! | AGAGCAAAATGGTAAGTTGA+TGG | - | chr4_4:72024869-72024888 | Msa0700860:intron | 35.0% |
| TCTAAAGAAGAGAAGGTCAA+AGG | - | chr4_4:72024995-72025014 | Msa0700860:intron | 35.0% | |
| AATACCATCAAAGTAGACCA+GGG | - | chr4_4:72025737-72025756 | Msa0700860:intron | 35.0% | |
| TTACGAGGAAAAATTGGAAG+AGG | - | chr4_4:72025801-72025820 | Msa0700860:intron | 35.0% | |
| ! | CCAACCTCTATTTTGCTTTA+AGG | + | chr4_4:72025847-72025866 | None:intergenic | 35.0% |
| CCTTAAAGCAAAATAGAGGT+TGG | - | chr4_4:72025844-72025863 | Msa0700860:intron | 35.0% | |
| AGGGTTATCTGACTATAATC+AGG | + | chr4_4:72025921-72025940 | None:intergenic | 35.0% | |
| ! | TCAGATAACCCTTTTATCAG+TGG | - | chr4_4:72025929-72025948 | Msa0700860:intron | 35.0% |
| ! | CAGATAACCCTTTTATCAGT+GGG | - | chr4_4:72025930-72025949 | Msa0700860:intron | 35.0% |
| ! | AGATAACCCTTTTATCAGTG+GGG | - | chr4_4:72025931-72025950 | Msa0700860:intron | 35.0% |
| CATTATCCCCACTGATAAAA+GGG | + | chr4_4:72025940-72025959 | None:intergenic | 35.0% | |
| TCATTATCCCCACTGATAAA+AGG | + | chr4_4:72025941-72025960 | None:intergenic | 35.0% | |
| !! | GTTATTTTCCTTCATAAGGG+AGG | - | chr4_4:72026072-72026091 | Msa0700860:intron | 35.0% |
| !! | TTGGTGCTAAATATGCTGTT+AGG | - | chr4_4:72026228-72026247 | Msa0700860:intron | 35.0% |
| CTAAATATGCTGTTAGGATG+TGG | - | chr4_4:72026234-72026253 | Msa0700860:intron | 35.0% | |
| ! | TCAACATCAAAAAGCACGTA+AGG | + | chr4_4:72026397-72026416 | None:intergenic | 35.0% |
| CATTATTCTTCTGCAATCAG+GGG | + | chr4_4:72026558-72026577 | None:intergenic | 35.0% | |
| GCATTATTCTTCTGCAATCA+GGG | + | chr4_4:72026559-72026578 | None:intergenic | 35.0% | |
| TGCATTATTCTTCTGCAATC+AGG | + | chr4_4:72026560-72026579 | None:intergenic | 35.0% | |
| TGAGATAGTTGGAAGAAACA+TGG | + | chr4_4:72026619-72026638 | None:intergenic | 35.0% | |
| ACTATTGTTAGATGTCCATC+AGG | + | chr4_4:72026683-72026702 | None:intergenic | 35.0% | |
| ! | ATACAAGGAGAACATTTTGG+GGG | + | chr4_4:72026706-72026725 | None:intergenic | 35.0% |
| GGTAATCATGTATCACAGAT+TGG | + | chr4_4:72026757-72026776 | None:intergenic | 35.0% | |
| ATACAGATGAGAGCCAATAA+TGG | - | chr4_4:72026780-72026799 | Msa0700860:intron | 35.0% | |
| ! | ATTTCTTTAGAGACATCCAC+GGG | + | chr4_4:72026879-72026898 | None:intergenic | 35.0% |
| ! | GATTTCTTTAGAGACATCCA+CGG | + | chr4_4:72026880-72026899 | None:intergenic | 35.0% |
| GAGTGAACTCATAGATAACT+TGG | - | chr4_4:72026964-72026983 | Msa0700860:CDS | 35.0% | |
| ! | GCTCATTAAAGTACCCATTT+CGG | + | chr4_4:72027035-72027054 | None:intergenic | 35.0% |
| AGCCATGGAACAAACAAAAA+GGG | - | chr4_4:72027052-72027071 | Msa0700860:intron | 35.0% | |
| !! | TTCCCTTTTTGTTTGTTCCA+TGG | + | chr4_4:72027057-72027076 | None:intergenic | 35.0% |
| GTATGCAAAATGAAGCTTGA+AGG | + | chr4_4:72027104-72027123 | None:intergenic | 35.0% | |
| !! | GAGAAAGGTGTTAGAACTTT+AGG | + | chr4_4:72027135-72027154 | None:intergenic | 35.0% |
| ACCTTTCTCTTCCTTAAGTT+GGG | - | chr4_4:72027146-72027165 | Msa0700860:intron | 35.0% | |
| GTGAGATGAGAGATTATGAA+GGG | + | chr4_4:72027236-72027255 | None:intergenic | 35.0% | |
| TGTGAGATGAGAGATTATGA+AGG | + | chr4_4:72027237-72027256 | None:intergenic | 35.0% | |
| TCAATATTCAGTATCCAAGC+AGG | - | chr4_4:72027317-72027336 | Msa0700860:intron | 35.0% | |
| !! | GATTATAAAGGGCATTGTTG+TGG | + | chr4_4:72027363-72027382 | None:intergenic | 35.0% |
| ATCTCAAACCCCAAACTAAA+CGG | - | chr4_4:72027387-72027406 | Msa0700860:intron | 35.0% | |
| !! | CCCACATCTGTTACTTATTT+TGG | - | chr4_4:72027477-72027496 | Msa0700860:CDS | 35.0% |
| AGCTGCTGCAGAAAATAAAT+TGG | - | chr4_4:72027650-72027669 | Msa0700860:intron | 35.0% | |
| TTGGCCAAAAAGAAACAAAC+AGG | - | chr4_4:72027669-72027688 | Msa0700860:intron | 35.0% | |
| !!! | GAGCTTCTCTTTTTTGAAAG+CGG | + | chr4_4:72027713-72027732 | None:intergenic | 35.0% |
| AAAAGAGAAGCTCAGAGAAA+TGG | - | chr4_4:72027720-72027739 | Msa0700860:CDS | 35.0% | |
| ATGGAAGATGTTAATTAGGG+GGG | - | chr4_4:72027882-72027901 | Msa0700860:CDS | 35.0% | |
| TAGGGTTATTGCATATAAGC+AGG | - | chr4_4:72027989-72028008 | Msa0700860:intron | 35.0% | |
| GAGAAACATCACAGAAGATA+AGG | + | chr4_4:72028023-72028042 | None:intergenic | 35.0% | |
| TTCTCACTTCCCTAATATCT+TGG | - | chr4_4:72028038-72028057 | Msa0700860:intron | 35.0% | |
| ATCTTAACTTACTGGCAGAA+GGG | + | chr4_4:72028080-72028099 | None:intergenic | 35.0% | |
| AATCTTAACTTACTGGCAGA+AGG | + | chr4_4:72028081-72028100 | None:intergenic | 35.0% | |
| TGCGTTAACCTATGTTATTG+TGG | - | chr4_4:72028627-72028646 | Msa0700860:intron | 35.0% | |
| ACATGACAAAAAGATAACCG+AGG | + | chr4_4:72028676-72028695 | None:intergenic | 35.0% | |
| CTCAGATACCTTGAGAAATG+AGG | + | chr4_4:72024072-72024091 | None:intergenic | 40.0% | |
| AGAAAGTTCAACAATGTGCG+AGG | + | chr4_4:72024445-72024464 | None:intergenic | 40.0% | |
| TTGTACACAGTATATACGGC+AGG | + | chr4_4:72024632-72024651 | None:intergenic | 40.0% | |
| TGTTTCAGTGGATCCTGAAA+TGG | - | chr4_4:72024737-72024756 | Msa0700860:intron | 40.0% | |
| AAGCCACCACTAATCGAAAA+AGG | - | chr4_4:72024784-72024803 | Msa0700860:intron | 40.0% | |
| !!! | CTTCCTTTTTCGATTAGTGG+TGG | + | chr4_4:72024790-72024809 | None:intergenic | 40.0% |
| CTACTCCATCTGATATATGG+AGG | + | chr4_4:72024961-72024980 | None:intergenic | 40.0% | |
| CCACTACTCCATCTGATATA+TGG | + | chr4_4:72024964-72024983 | None:intergenic | 40.0% | |
| CCATATATCAGATGGAGTAG+TGG | - | chr4_4:72024961-72024980 | Msa0700860:intron | 40.0% | |
| ATCAGAATCTCTACGCTTCT+TGG | + | chr4_4:72025023-72025042 | None:intergenic | 40.0% | |
| GCGTGGCAACTATTGTAAAT+TGG | + | chr4_4:72025424-72025443 | None:intergenic | 40.0% | |
| ATGTCTACATGCTCACTGAT+AGG | + | chr4_4:72025541-72025560 | None:intergenic | 40.0% | |
| ! | TCTTTCAACCTGTTGACTAC+TGG | - | chr4_4:72025576-72025595 | Msa0700860:intron | 40.0% |
| GAATACCATCAAAGTAGACC+AGG | - | chr4_4:72025736-72025755 | Msa0700860:intron | 40.0% | |
| TGCTAATGGGGTATGTTAGT+TGG | - | chr4_4:72026209-72026228 | Msa0700860:intron | 40.0% | |
| AATATGCTGTTAGGATGTGG+AGG | - | chr4_4:72026237-72026256 | Msa0700860:intron | 40.0% | |
| TGGAAGAAACATGGCATGTT+GGG | + | chr4_4:72026610-72026629 | None:intergenic | 40.0% | |
| TTGGAAGAAACATGGCATGT+TGG | + | chr4_4:72026611-72026630 | None:intergenic | 40.0% | |
| GTTAGTTGAGCTGAGATAGT+TGG | + | chr4_4:72026630-72026649 | None:intergenic | 40.0% | |
| CTGAAAACATTATTCCGCCA+AGG | - | chr4_4:72026729-72026748 | Msa0700860:intron | 40.0% | |
| TGTATCACAGATTGGAACCT+TGG | + | chr4_4:72026749-72026768 | None:intergenic | 40.0% | |
| ! | ATTGGCTCTCATCTGTATCT+TGG | + | chr4_4:72026778-72026797 | None:intergenic | 40.0% |
| TTGACCATGACATCCGAAAT+GGG | - | chr4_4:72027019-72027038 | Msa0700860:intron | 40.0% | |
| ATGGGTACTTTAATGAGCCA+TGG | - | chr4_4:72027037-72027056 | Msa0700860:intron | 40.0% | |
| GAGCCATGGAACAAACAAAA+AGG | - | chr4_4:72027051-72027070 | Msa0700860:intron | 40.0% | |
| AGGAGGAATAGGTCTGTATT+GGG | + | chr4_4:72027084-72027103 | None:intergenic | 40.0% | |
| AAGGAGGAATAGGTCTGTAT+TGG | + | chr4_4:72027085-72027104 | None:intergenic | 40.0% | |
| ATGAAGCTTGAAGGAGGAAT+AGG | + | chr4_4:72027095-72027114 | None:intergenic | 40.0% | |
| TGCAAAATGAAGCTTGAAGG+AGG | + | chr4_4:72027101-72027120 | None:intergenic | 40.0% | |
| CACCTTTCTCTTCCTTAAGT+TGG | - | chr4_4:72027145-72027164 | Msa0700860:intron | 40.0% | |
| ATTTCCTTTAGCAGGACGAA+TGG | - | chr4_4:72027187-72027206 | Msa0700860:intron | 40.0% | |
| !! | ATTATGAAGGGCATTGTCGT+GGG | + | chr4_4:72027224-72027243 | None:intergenic | 40.0% |
| ! | TAGTTTTCTTCCTACCCTTG+TGG | + | chr4_4:72027590-72027609 | None:intergenic | 40.0% |
| AAAACTACTGACGCTGAAAG+TGG | - | chr4_4:72027603-72027622 | Msa0700860:intron | 40.0% | |
| AAACTACTGACGCTGAAAGT+GGG | - | chr4_4:72027604-72027623 | Msa0700860:intron | 40.0% | |
| AAGATGTTAATTAGGGGGGT+TGG | - | chr4_4:72027886-72027905 | Msa0700860:CDS | 40.0% | |
| AGATGTTAATTAGGGGGGTT+GGG | - | chr4_4:72027887-72027906 | Msa0700860:CDS | 40.0% | |
| ! | TGATTTAAGACAGCGTCTAG+GGG | + | chr4_4:72028241-72028260 | None:intergenic | 40.0% |
| ! | CTGATTTAAGACAGCGTCTA+GGG | + | chr4_4:72028242-72028261 | None:intergenic | 40.0% |
| ! | TGTTTTGCTTGCAGAGCTAA+TGG | - | chr4_4:72028315-72028334 | Msa0700860:intron | 40.0% |
| ! | AATGATGTTGATTGCAGCCA+AGG | - | chr4_4:72028414-72028433 | Msa0700860:CDS | 40.0% |
| ! | TGAGTTATATTTTGCTGGGC+TGG | - | chr4_4:72028580-72028599 | Msa0700860:intron | 40.0% |
| GGTTAACGCAATCCAATGAT+GGG | + | chr4_4:72028617-72028636 | None:intergenic | 40.0% | |
| AGGTTAACGCAATCCAATGA+TGG | + | chr4_4:72028618-72028637 | None:intergenic | 40.0% | |
| TTTCGCTCCCTCATTTCTCA+AGG | - | chr4_4:72024061-72024080 | Msa0700860:three_prime_UTR | 45.0% | |
| AGGTGTAGGTACTACTAGGT+TGG | - | chr4_4:72024153-72024172 | Msa0700860:three_prime_UTR | 45.0% | |
| GGTGTAGGTACTACTAGGTT+GGG | - | chr4_4:72024154-72024173 | Msa0700860:three_prime_UTR | 45.0% | |
| GTGTAGGTACTACTAGGTTG+GGG | - | chr4_4:72024155-72024174 | Msa0700860:three_prime_UTR | 45.0% | |
| GAGGGATCAAATTGGGAGTT+AGG | - | chr4_4:72024197-72024216 | Msa0700860:three_prime_UTR | 45.0% | |
| !! | GTAAGTTGATGGTTACGGTG+TGG | - | chr4_4:72024880-72024899 | Msa0700860:intron | 45.0% |
| GGAGATGATGACTGCTCAAA+TGG | - | chr4_4:72025269-72025288 | Msa0700860:intron | 45.0% | |
| ATGCTCACTGATAGGCAGTA+GGG | + | chr4_4:72025533-72025552 | None:intergenic | 45.0% | |
| ! | ACCTGTTGACTACTGGAATG+TGG | - | chr4_4:72025583-72025602 | Msa0700860:intron | 45.0% |
| ACCACATTCCAGTAGTCAAC+AGG | + | chr4_4:72025587-72025606 | None:intergenic | 45.0% | |
| GGAATACTCAAACCACAGAG+TGG | - | chr4_4:72025707-72025726 | Msa0700860:intron | 45.0% | |
| TCAAACCACAGAGTGGATCA+TGG | - | chr4_4:72025714-72025733 | Msa0700860:intron | 45.0% | |
| GTATTCCATGATCCACTCTG+TGG | + | chr4_4:72025722-72025741 | None:intergenic | 45.0% | |
| AGCATCAAGTGCTAAGCACA+TGG | + | chr4_4:72026163-72026182 | None:intergenic | 45.0% | |
| GAAACATGGCATGTTGGGTA+AGG | + | chr4_4:72026605-72026624 | None:intergenic | 45.0% | |
| TAGATGTCCATCAGGACTGT+TGG | + | chr4_4:72026675-72026694 | None:intergenic | 45.0% | |
| ATCACAGATTGGAACCTTGG+CGG | + | chr4_4:72026746-72026765 | None:intergenic | 45.0% | |
| TTGTGAGCAATGAAGGTCTG+TGG | + | chr4_4:72026816-72026835 | None:intergenic | 45.0% | |
| GCTATCGTTGTGAGCAATGA+AGG | + | chr4_4:72026823-72026842 | None:intergenic | 45.0% | |
| CATTTCGGATGTCATGGTCA+AGG | + | chr4_4:72027020-72027039 | None:intergenic | 45.0% | |
| CTTGACCATGACATCCGAAA+TGG | - | chr4_4:72027018-72027037 | Msa0700860:intron | 45.0% | |
| AGTACCCATTTCGGATGTCA+TGG | + | chr4_4:72027026-72027045 | None:intergenic | 45.0% | |
| GCCCAACTTAAGGAAGAGAA+AGG | + | chr4_4:72027150-72027169 | None:intergenic | 45.0% | |
| GAAAGGTGAAGCCCAACTTA+AGG | + | chr4_4:72027160-72027179 | None:intergenic | 45.0% | |
| !! | GATTATGAAGGGCATTGTCG+TGG | + | chr4_4:72027225-72027244 | None:intergenic | 45.0% |
| !! | CATTGTTGTGGGAGAGTACT+AGG | + | chr4_4:72027351-72027370 | None:intergenic | 45.0% |
| GATGTTAATTAGGGGGGTTG+GGG | - | chr4_4:72027888-72027907 | Msa0700860:CDS | 45.0% | |
| ATGTTAATTAGGGGGGTTGG+GGG | - | chr4_4:72027889-72027908 | Msa0700860:CDS | 45.0% | |
| CGAGGCTCATTCATGCTTTA+CGG | - | chr4_4:72028195-72028214 | Msa0700860:CDS | 45.0% | |
| ! | GCTGATTTAAGACAGCGTCT+AGG | + | chr4_4:72028243-72028262 | None:intergenic | 45.0% |
| GGAACTGCAGAGCAAATTTG+AGG | - | chr4_4:72028336-72028355 | Msa0700860:CDS | 45.0% | |
| ACTGCAGAGCAAATTTGAGG+AGG | - | chr4_4:72028339-72028358 | Msa0700860:CDS | 45.0% | |
| AAGAAAAGAACCTGCGACCT+TGG | + | chr4_4:72028434-72028453 | None:intergenic | 45.0% | |
| ! | AAGGTCGCAGGTTCTTTTCT+TGG | - | chr4_4:72028433-72028452 | Msa0700860:exon | 45.0% |
| ! | AGGTCGCAGGTTCTTTTCTT+GGG | - | chr4_4:72028434-72028453 | Msa0700860:exon | 45.0% |
| !! | GCAATCCAATGATGGGCATA+AGG | + | chr4_4:72028610-72028629 | None:intergenic | 45.0% |
| !!! | ATAAAATCATATAATTTTTA+AGG | + | chr4_4:72028174-72028193 | None:intergenic | 5.0% |
| GAGTTTCCACCTGCGTTTAG+CGG | + | chr4_4:72024027-72024046 | None:intergenic | 50.0% | |
| ! | GGAGAAAAAGGCATACGGAC+CGG | - | chr4_4:72024317-72024336 | Msa0700860:exon | 50.0% |
| ! | GAGAAAAAGGCATACGGACC+GGG | - | chr4_4:72024318-72024337 | Msa0700860:exon | 50.0% |
| ! | AGAAAAAGGCATACGGACCG+GGG | - | chr4_4:72024319-72024338 | Msa0700860:exon | 50.0% |
| TGAGCAGTCATCATCTCCAG+AGG | + | chr4_4:72025267-72025286 | None:intergenic | 50.0% | |
| AGTAGGGTGGATGTTGGCAA+AGG | + | chr4_4:72025517-72025536 | None:intergenic | 50.0% | |
| ATAGGCAGTAGGGTGGATGT+TGG | + | chr4_4:72025523-72025542 | None:intergenic | 50.0% | |
| CATGCTCACTGATAGGCAGT+AGG | + | chr4_4:72025534-72025553 | None:intergenic | 50.0% | |
| CCAACCCTGGTCTACTTTGA+TGG | + | chr4_4:72025744-72025763 | None:intergenic | 50.0% | |
| CCATCAAAGTAGACCAGGGT+TGG | - | chr4_4:72025741-72025760 | Msa0700860:intron | 50.0% | |
| TCAAAGTAGACCAGGGTTGG+AGG | - | chr4_4:72025744-72025763 | Msa0700860:intron | 50.0% | |
| TGTTGCAAAACCTCCAACCC+TGG | + | chr4_4:72025757-72025776 | None:intergenic | 50.0% | |
| TCCTTCATAAGGGAGGGCTA+AGG | - | chr4_4:72026079-72026098 | Msa0700860:intron | 50.0% | |
| CCTTCATAAGGGAGGGCTAA+GGG | - | chr4_4:72026080-72026099 | Msa0700860:intron | 50.0% | |
| ACATGGCATGTTGGGTAAGG+AGG | + | chr4_4:72026602-72026621 | None:intergenic | 50.0% | |
| ATCCTGACCAACAGTCCTGA+TGG | - | chr4_4:72026665-72026684 | Msa0700860:intron | 50.0% | |
| TGAGAGCCAATAATGGCCTC+TGG | - | chr4_4:72026787-72026806 | Msa0700860:intron | 50.0% | |
| GAGAGCCAATAATGGCCTCT+GGG | - | chr4_4:72026788-72026807 | Msa0700860:intron | 50.0% | |
| AGAGCCAATAATGGCCTCTG+GGG | - | chr4_4:72026789-72026808 | Msa0700860:intron | 50.0% | |
| ! | AGGTGGCTTCTATTTTCCCG+TGG | - | chr4_4:72026860-72026879 | Msa0700860:intron | 50.0% |
| GTGGCACATGTTTCAGCAAG+AGG | - | chr4_4:72026939-72026958 | Msa0700860:CDS | 50.0% | |
| TAGGCCATTCGTCCTGCTAA+AGG | + | chr4_4:72027194-72027213 | None:intergenic | 50.0% | |
| !! | CATTGTCGTGGGAGAGTACT+AGG | + | chr4_4:72027213-72027232 | None:intergenic | 50.0% |
| ACTAGGTCTTTCGTCCTGCT+TGG | + | chr4_4:72027334-72027353 | None:intergenic | 50.0% | |
| AAAGAAGCCCTTGCTGCAGA+AGG | - | chr4_4:72027543-72027562 | Msa0700860:CDS | 50.0% | |
| GCTGAAAGTGGGATTGCTGT+GGG | - | chr4_4:72027615-72027634 | Msa0700860:intron | 50.0% | |
| TCTAGGGGTGAGGGAAAATG+GGG | + | chr4_4:72028226-72028245 | None:intergenic | 50.0% | |
| GTCTAGGGGTGAGGGAAAAT+GGG | + | chr4_4:72028227-72028246 | None:intergenic | 50.0% | |
| TGCAACAGTTGAGAGCTGCT+AGG | - | chr4_4:72028374-72028393 | Msa0700860:CDS | 50.0% | |
| ! | GGTCGCAGGTTCTTTTCTTG+GGG | - | chr4_4:72028435-72028454 | Msa0700860:exon | 50.0% |
| ! | GTCGCAGGTTCTTTTCTTGG+GGG | - | chr4_4:72028436-72028455 | Msa0700860:exon | 50.0% |
| ! | AGGTTCTTTTCTTGGGGGAG+CGG | - | chr4_4:72028441-72028460 | Msa0700860:exon | 50.0% |
| GCGTTCCTTATGCCCATCAT+TGG | - | chr4_4:72028602-72028621 | Msa0700860:intron | 50.0% | |
| CTCACTGATAGGCAGTAGGG+TGG | + | chr4_4:72025530-72025549 | None:intergenic | 55.0% | |
| CCCTTAGCCCTCCCTTATGA+AGG | + | chr4_4:72026083-72026102 | None:intergenic | 55.0% | |
| GTCCATCAGGACTGTTGGTC+AGG | + | chr4_4:72026670-72026689 | None:intergenic | 55.0% | |
| TGGACCCCAGAGGCCATTAT+TGG | + | chr4_4:72026796-72026815 | None:intergenic | 55.0% | |
| TCTTGGTCATTGCTGCAGCG+TGG | - | chr4_4:72026920-72026939 | Msa0700860:intron | 55.0% | |
| CCATCCTCCTTCTGCAGCAA+GGG | + | chr4_4:72027553-72027572 | None:intergenic | 55.0% | |
| TCCATCCTCCTTCTGCAGCA+AGG | + | chr4_4:72027554-72027573 | None:intergenic | 55.0% | |
| TGCTGCAGAAGGAGGATGGA+CGG | - | chr4_4:72027554-72027573 | Msa0700860:CDS | 55.0% | |
| ACGGTGGTTCAGCACCACAA+GGG | - | chr4_4:72027573-72027592 | Msa0700860:intron | 55.0% | |
| TGGTTCAGCACCACAAGGGT+AGG | - | chr4_4:72027577-72027596 | Msa0700860:intron | 55.0% | |
| CGCTGAAAGTGGGATTGCTG+TGG | - | chr4_4:72027614-72027633 | Msa0700860:intron | 55.0% | |
| AAGTGGGATTGCTGTGGGCT+CGG | - | chr4_4:72027620-72027639 | Msa0700860:intron | 55.0% | |
| CGTCTAGGGGTGAGGGAAAA+TGG | + | chr4_4:72028228-72028247 | None:intergenic | 55.0% | |
| AAGACAGCGTCTAGGGGTGA+GGG | + | chr4_4:72028235-72028254 | None:intergenic | 55.0% | |
| TAAGACAGCGTCTAGGGGTG+AGG | + | chr4_4:72028236-72028255 | None:intergenic | 55.0% | |
| TTGATTGCAGCCAAGGTCGC+AGG | - | chr4_4:72028421-72028440 | Msa0700860:CDS | 55.0% | |
| AGAACCTGGCCGCTAAACGC+AGG | - | chr4_4:72024015-72024034 | Msa0700860:three_prime_UTR | 60.0% | |
| TGAAGGTCTGTGGACCCCAG+AGG | + | chr4_4:72026806-72026825 | None:intergenic | 60.0% | |
| GAAGCCCTTGCTGCAGAAGG+AGG | - | chr4_4:72027546-72027565 | Msa0700860:CDS | 60.0% | |
| CCCTTGCTGCAGAAGGAGGA+TGG | - | chr4_4:72027550-72027569 | Msa0700860:CDS | 60.0% | |
| TGCAGAAGGAGGATGGACGG+TGG | - | chr4_4:72027557-72027576 | Msa0700860:CDS | 60.0% | |
| GACGGTGGTTCAGCACCACA+AGG | - | chr4_4:72027572-72027591 | Msa0700860:intron | 60.0% | |
| ACCTGGCCGCTAAACGCAGG+TGG | - | chr4_4:72024018-72024037 | Msa0700860:three_prime_UTR | 65.0% | |
| TCCACCTGCGTTTAGCGGCC+AGG | + | chr4_4:72024022-72024041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72024014 | 72028733 | 72024014 | ID=Msa0700860;Name=Msa0700860 |
| chr4_4 | mRNA | 72024014 | 72028733 | 72024014 | ID=Msa0700860-mRNA-1;Parent=Msa0700860;Name=Msa0700860-mRNA-1;_AED=0.39;_eAED=0.39;_QI=83|1|1|1|0.87|0.77|9|319|330 |
| chr4_4 | exon | 72024014 | 72024418 | 72024014 | ID=Msa0700860-mRNA-1:exon:21997;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72025006 | 72025216 | 72025006 | ID=Msa0700860-mRNA-1:exon:21996;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72026925 | 72027022 | 72026925 | ID=Msa0700860-mRNA-1:exon:21995;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72027448 | 72027579 | 72027448 | ID=Msa0700860-mRNA-1:exon:21994;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72027683 | 72027775 | 72027683 | ID=Msa0700860-mRNA-1:exon:21993;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72027868 | 72028002 | 72027868 | ID=Msa0700860-mRNA-1:exon:21992;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72028137 | 72028259 | 72028137 | ID=Msa0700860-mRNA-1:exon:21991;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72028334 | 72028462 | 72028334 | ID=Msa0700860-mRNA-1:exon:21990;Parent=Msa0700860-mRNA-1 |
| chr4_4 | exon | 72028665 | 72028733 | 72028665 | ID=Msa0700860-mRNA-1:exon:21989;Parent=Msa0700860-mRNA-1 |
| chr4_4 | five_prime_UTR | 72028665 | 72028733 | 72028665 | ID=Msa0700860-mRNA-1:five_prime_utr;Parent=Msa0700860-mRNA-1 |
| chr4_4 | five_prime_UTR | 72028449 | 72028462 | 72028449 | ID=Msa0700860-mRNA-1:five_prime_utr;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72028334 | 72028448 | 72028334 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72028137 | 72028259 | 72028137 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72027868 | 72028002 | 72027868 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72027683 | 72027775 | 72027683 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72027448 | 72027579 | 72027448 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72026925 | 72027022 | 72026925 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72025006 | 72025216 | 72025006 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | CDS | 72024333 | 72024418 | 72024333 | ID=Msa0700860-mRNA-1:cds;Parent=Msa0700860-mRNA-1 |
| chr4_4 | three_prime_UTR | 72024014 | 72024332 | 72024014 | ID=Msa0700860-mRNA-1:three_prime_utr;Parent=Msa0700860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
